BLASTP 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1059580546-07766-17869

Query= 
         (96 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,479,768 sequences; 476,959,297 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs



Results of PSI-Blast iteration 1

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]    175   1e-43 

 gi|25511635|pir||B86292  F7H2.12 protein - Arabidopsis thaliana >...   172   1e-42 

 gi|15218294|ref|NP_173030.1|  expressed protein [Arabidopsis thal...   172   1e-42 

 gi|15226772|ref|NP_178842.1|  hypothetical protein [Arabidopsis t...   171   2e-42 

 gi|10092262|gb|AAG12675.1|AC027033_10  hypothetical protein; 5804...   170   4e-42 

 gi|32489490|emb|CAE03805.1|  OSJNBa0027H09.5 [Oryza sativa (japon...   148   2e-35 

 gi|28071313|dbj|BAC56002.1|  P0705A05.20 [Oryza sativa (japonica ...   144   2e-34 


Sequences with E-value WORSE than threshold


 gi|21956190|gb|AAM83255.1|AF378334_1  ARC105 [Xenopus laevis]           38   0.045 

 gi|28374176|gb|AAH46263.1|  Similar to PC2 (positive cofactor 2, ...    34   0.67  

 gi|7506661|pir||T16726  hypothetical protein R12B2.5 - Caenorhabd...    33   1.6   

 gi|25148756|ref|NP_741152.1|  putative protein (3G918) [Caenorhab...    33   1.6   

 gi|25148761|ref|NP_741151.1|  putative protein (3G918) [Caenorhab...    33   1.6   

 gi|29612457|gb|AAH49891.1|  Pcqap protein [Mus musculus]                31   6.0   

 gi|20891927|ref|XP_147188.1|  positive cofactor 2, multiprotein c...    31   6.1   

 gi|20177999|sp|Q924H2|PCAP_MOUSE  Positive cofactor 2 glutamine/Q...    30   6.4   

 gi|32451779|gb|AAH54779.1|  Unknown (protein for MGC:65648) [Mus ...    30   6.4   

 gi|28279616|gb|AAH45472.1|  Similar to PC2 (positive cofactor 2, ...    30   7.4   

 gi|21312134|ref|NP_056973.2|  positive cofactor 2, glutamine/Q-ri...    30   9.3   

 gi|14276857|gb|AAK58423.1|AF328769_1  PC2-glutamine-rich-associat...    30   9.3   

 gi|23270751|gb|AAH17110.1|  Unknown (protein for MGC:16010) [Homo...    30   9.8   


Alignments








>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  175 bits (444), Expect = 1e-43
 Identities = 71/96 (73%), Positives = 80/96 (83%)

Query: 1    IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 60
            IQPLRLLVP +YPN SP LLDK PVE SKE EDLS KA +RF+I LRSLSQPMSL +IA+
Sbjct: 1310 IQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIAR 1369

Query: 61   TWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS 96
            TWD CAR VI EYAQQ GGG+FSSKYGTWE  ++A+
Sbjct: 1370 TWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA 1405



>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  172 bits (436), Expect = 1e-42
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1    IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 60
            IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK
Sbjct: 1271 IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 1330

Query: 61   TWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS 96
            TWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS
Sbjct: 1331 TWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS 1366



>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  172 bits (436), Expect = 1e-42
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1    IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 60
            IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK
Sbjct: 1240 IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 1299

Query: 61   TWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS 96
            TWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS
Sbjct: 1300 TWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS 1335



>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score =  171 bits (434), Expect = 2e-42
 Identities = 49/97 (50%), Positives = 69/97 (71%), Gaps = 1/97 (1%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDKLPVETS-KENEDLSSKAMARFNILLRSLSQPMSLKDIA 59
           IQPLRLL P  YP  SP +L+++  +TS  + EDLS++  +RF++ ++  S+P   K IA
Sbjct: 839 IQPLRLLFPMDYPYSSPIVLEEISFDTSVHKYEDLSARTRSRFSLSMKEFSEPGFSKGIA 898

Query: 60  KTWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS 96
           +TW+ CARA + EYA++ GGGTFSSKYG WE  + AS
Sbjct: 899 QTWNDCARATMVEYAERHGGGTFSSKYGAWETVLRAS 935



>gi|10092262|gb|AAG12675.1|AC027033_10   hypothetical protein; 58049-55604 [Arabidopsis thaliana]
          Length = 634

 Score =  170 bits (432), Expect = 4e-42
 Identities = 53/97 (54%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDKLPVETS-KENEDLSSKAMARFNILLRSLSQPMSLKDIA 59
           IQPLRLLVP  YP  SP +LD++  +TS  + EDLS++  +RF++ +R +S+P SLK+IA
Sbjct: 538 IQPLRLLVPLDYPYSSPMVLDEISFDTSVHKYEDLSARTRSRFSLSMREISEPGSLKEIA 597

Query: 60  KTWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS 96
           +TW  C RA + EYA++ GGGTFSSKYG WE  + AS
Sbjct: 598 QTWTDCVRATMVEYAERHGGGTFSSKYGAWETVLRAS 634



>gi|32489490|emb|CAE03805.1|   OSJNBa0027H09.5 [Oryza sativa (japonica cultivar-group)]
          Length = 1392

 Score =  148 bits (373), Expect = 2e-35
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 60
           + P++LLVP  YP  SP L+D    +  +   D+S      F   +  L +P S++ +A 
Sbjct: 891 VMPVKLLVPADYPKSSPILVDN--DDEQRRLSDISYAVAVAFGCAVDELPEPRSIEAMAM 948

Query: 61  TWDACARAVICEYAQQFGGGTFSSKYGTW 89
            WD C R  + E A + GGGTFSS++  W
Sbjct: 949 AWDGCVRRAVTEVAHRHGGGTFSSRHNQW 977



>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  144 bits (365), Expect = 2e-34
 Identities = 61/95 (64%), Positives = 75/95 (78%), Gaps = 1/95 (1%)

Query: 1    IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 60
            I PLR+LVP SYP  SP LLDK P E  + ++DLS+KA ++F+ILLR L++PMSL++IA+
Sbjct: 1266 ILPLRVLVPASYPKCSPVLLDKFPDE-QRNSDDLSTKARSKFSILLRGLAEPMSLREIAR 1324

Query: 61   TWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAA 95
            TWDACAR VI EYAQQ GGG+FSS YG WE  V A
Sbjct: 1325 TWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA 1359



>gi|21956190|gb|AAM83255.1|AF378334_1   ARC105 [Xenopus laevis]
          Length = 754

 Score = 37.5 bits (86), Expect = 0.045
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 60
           + PL+L VP  YP+ SP  +D      +        + M      L  L    SL  +  
Sbjct: 684 VPPLQLSVPADYPDQSPLWMDNPRDYEANPFLQSVYRYMTS---KLLQLPDKHSLTALLN 740

Query: 61  TWDACARAV 69
           TW    R  
Sbjct: 741 TWAQSIRQA 749



>gi|28374176|gb|AAH46263.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Xenopus laevis]
          Length = 846

 Score = 33.7 bits (76), Expect = 0.67
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 60
           + PL+L VP  YP+ SP  +D      +        + M      L  L    SL  +  
Sbjct: 776 VPPLQLSVPAEYPDQSPLWMDNPRQYEANPFLQSVYRYMTS---KLLQLPDKHSLTALLN 832

Query: 61  TWDACARAV 69
           TW    R  
Sbjct: 833 TWAQSIRQA 841



>gi|7506661|pir||T16726   hypothetical protein R12B2.5 - Caenorhabditis elegans
          Length = 760

 Score = 32.5 bits (73), Expect = 1.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 3   PLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPM--SLKDIAK 60
           PLRL+VP +YP G+ ++   +    +   +DL +    R       LS+P   S+ D   
Sbjct: 674 PLRLVVPTTYPAGNVTVDRAVIDLDAYLYDDLQNSVYER-------LSRPGLSSITDYLN 726

Query: 61  TWDACARAVICEYAQQFGGG 80
            W+      + +Y  Q  GG
Sbjct: 727 AWEE----QVNQYQNQTSGG 742



>gi|25148756|ref|NP_741152.1|   putative protein (3G918) [Caenorhabditis elegans]
 gi|21363104|sp|Q21955|YNL5_CAEEL   Hypothetical protein R12B2.5 in chromosome III
 gi|17976542|gb|AAA50743.3|   Hypothetical protein R12B2.5a [Caenorhabditis elegans]
          Length = 780

 Score = 32.5 bits (73), Expect = 1.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 3   PLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPM--SLKDIAK 60
           PLRL+VP +YP G+ ++   +    +   +DL +    R       LS+P   S+ D   
Sbjct: 694 PLRLVVPTTYPAGNVTVDRAVIDLDAYLYDDLQNSVYER-------LSRPGLSSITDYLN 746

Query: 61  TWDACARAVICEYAQQFGGG 80
            W+      + +Y  Q  GG
Sbjct: 747 AWEE----QVNQYQNQTSGG 762



>gi|25148761|ref|NP_741151.1|   putative protein (3G918) [Caenorhabditis elegans]
 gi|21450526|gb|AAM54164.1|U00066_6   Hypothetical protein R12B2.5b [Caenorhabditis elegans]
          Length = 777

 Score = 32.5 bits (73), Expect = 1.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 3   PLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPM--SLKDIAK 60
           PLRL+VP +YP G+ ++   +    +   +DL +    R       LS+P   S+ D   
Sbjct: 691 PLRLVVPTTYPAGNVTVDRAVIDLDAYLYDDLQNSVYER-------LSRPGLSSITDYLN 743

Query: 61  TWDACARAVICEYAQQFGGG 80
            W+      + +Y  Q  GG
Sbjct: 744 AWEE----QVNQYQNQTSGG 759



>gi|29612457|gb|AAH49891.1|   Pcqap protein [Mus musculus]
          Length = 651

 Score = 30.6 bits (68), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDK 22
           + PL L VP  YP  SP  +D+
Sbjct: 581 VPPLELSVPADYPAQSPMWIDR 602



>gi|20891927|ref|XP_147188.1|   positive cofactor 2, multiprotein complex,
           glutamine/Q-rich-associated protein [Mus musculus]
          Length = 763

 Score = 30.6 bits (68), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDK 22
           + PL L VP  YP  SP  +D+
Sbjct: 693 VPPLELSVPADYPAQSPMWIDR 714



>gi|20177999|sp|Q924H2|PCAP_MOUSE   Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score = 30.2 bits (67), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDK 22
           + PL L VP  YP  SP  +D+
Sbjct: 722 VPPLELSVPADYPAQSPMWIDR 743



>gi|32451779|gb|AAH54779.1|   Unknown (protein for MGC:65648) [Mus musculus]
          Length = 749

 Score = 30.2 bits (67), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDK 22
           + PL L VP  YP  SP  +D+
Sbjct: 679 VPPLELSVPADYPAQSPMWIDR 700



>gi|28279616|gb|AAH45472.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Danio rerio]
          Length = 809

 Score = 30.2 bits (67), Expect = 7.4
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAK 60
           + PL+L +P  YP+ SP   D        E               L  L    S+  +  
Sbjct: 740 VPPLQLSIPADYPDQSPHWED---DGQQYEANPFLRTVHKNMTSKLLQLPDKHSVTALLN 796

Query: 61  TWDACARAV 69
           TW    R  
Sbjct: 797 TWAQSVRQA 805



>gi|21312134|ref|NP_056973.2|   positive cofactor 2, glutamine/Q-rich-associated protein; TPA
           inducible protein; TPA inducible gene-1;
           PC2-glutamine-rich-associated protein; trinucleotide
           repeat containing 7 [Homo sapiens]
 gi|15559260|gb|AAH13985.1|AAH13985   PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Homo sapiens]
          Length = 748

 Score = 29.8 bits (66), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDK 22
           + PL L VP  YP  SP  +D+
Sbjct: 678 VPPLELSVPADYPAQSPLWIDR 699



>gi|14276857|gb|AAK58423.1|AF328769_1   PC2-glutamine-rich-associated protein [Homo sapiens]
          Length = 746

 Score = 29.8 bits (66), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDK 22
           + PL L VP  YP  SP  +D+
Sbjct: 676 VPPLELSVPADYPAQSPLWIDR 697



>gi|23270751|gb|AAH17110.1|   Unknown (protein for MGC:16010) [Homo sapiens]
          Length = 653

 Score = 29.8 bits (66), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 1   IQPLRLLVPCSYPNGSPSLLDK 22
           + PL L VP  YP  SP  +D+
Sbjct: 583 VPPLELSVPADYPAQSPLWIDR 604






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jul 29, 2003  1:34 PM
  Number of letters in database: 476,959,297
  Number of sequences in database:  1,479,768
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,222,047
Number of Sequences: 1479768
Number of extensions: 2849028
Number of successful extensions: 5245
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 31
length of query: 96
length of database: 476,959,297
effective HSP length: 72
effective length of query: 24
effective length of database: 370,416,001
effective search space: 8889984024
effective search space used: 8889984024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)