BLASTP 2.2.6 [Apr-09-2003]

RID: 1063991325-24675-562132.BLASTQ3

Query= NP_173030
         (117 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,524,159 sequences; 490,690,828 total letters



Results of PSI-Blast iteration 4

Skip to the first new sequence

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
Related Structures
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|15218294|ref|NP_173030.1|  expressed protein [Arabidopsis thal...   193   6e-49 

 gi|25511635|pir||B86292  F7H2.12 protein - Arabidopsis thaliana >...   178   2e-44 

 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]    170   4e-42 

 gi|28071313|dbj|BAC56002.1|  P0705A05.20 [Oryza sativa (japonica ...   160   4e-39 

 gi|24461860|gb|AAN62347.1|AF506028_14  CTV.20 [Poncirus trifoliata]    152   9e-37 

 gi|22329593|ref|NP_173031.2|  expressed protein [Arabidopsis thal...   152   1e-36 

 gi|7493813|pir||T18235  transcription activator GAL11 homolog - y...   114   4e-25 

 gi|27260984|dbj|BAC45101.1|  OJ1705_C03.23 [Oryza sativa (japonic...   106   6e-23 

 gi|15226772|ref|NP_178842.1|  hypothetical protein [Arabidopsis t...   100   4e-21 

 gi|7511830|pir||T13828  CREB-binding protein homolog - fruit fly ...    99   2e-20 

 gi|24640865|ref|NP_524642.2|  nejire CG15319-PB [Drosophila melan...    97   3e-20 

 gi|31204369|ref|XP_311133.1|  ENSANGP00000004748 [Anopheles gambi...    75   2e-13 

 gi|2133462|pir||S60123  hypothetical protein R10E11.1 - Caenorhab...    75   3e-13 

 gi|17552708|ref|NP_499161.1|  CBP/p300 homolog (cbp-1) [Caenorhab...    74   3e-13 

 gi|17552710|ref|NP_499160.1|  CBP/p300 homolog (cbp-1) [Caenorhab...    74   3e-13 

 gi|21307831|gb|AAL54859.1|  CREB-binding protein [Aplysia califor...    73   1e-12 

 gi|4758056|ref|NP_004371.1|  CREB binding protein [Homo sapiens] ...    72   2e-12 

 gi|4321116|gb|AAC51331.2|  CREB-binding protein [Homo sapiens]          72   2e-12 

 gi|631119|pir||S39162  transcription coactivator CREB-binding pro...    71   3e-12 

 gi|737920|prf||1923401A  protein CBP                                    70   7e-12 

 gi|4139873|pdb|1KDX|A  Chain A, Kix Domain Of Mouse Cbp (Creb Bin...    70   8e-12 

 gi|1345703|sp|P45481|CBP_MOUSE  CREB-binding protein >gi|481698|p...    69   2e-11 

 gi|27666550|ref|XP_235770.1|  similar to E1A-associated protein p...    69   2e-11 

 gi|19547885|gb|AAL87531.1|  CREB-binding protein [Mus musculus] >...    69   2e-11 

 gi|31753089|gb|AAH53889.1|  Unknown (protein for IMAGE:6151364) [...    68   3e-11 

 gi|2996629|gb|AAC08447.1|  CBP [Homo sapiens]                           68   3e-11 

 gi|4557557|ref|NP_001420.1|  E1A binding protein p300; E1A-bindin...    68   3e-11 

 gi|547239|gb|AAB31182.1|  p300=transcription coactivator {N-termi...    67   4e-11 

 gi|27663074|ref|XP_235502.1|  similar to E1A-associated protein p...    67   6e-11 

 gi|28486616|ref|XP_283295.1|  similar to E1A-associated protein p...    66   1e-10 

 gi|27881767|gb|AAH44677.1|  Similar to CREB binding protein (Rubi...    64   3e-10 

 gi|17554044|ref|NP_499201.1|  CREB-binding protein like family me...    63   9e-10 

 gi|482238|pir||S41033  hypothetical protein K03H1.10 - Caenorhabd...    63   9e-10 

 gi|27260985|dbj|BAC45102.1|  OJ1705_C03.24 [Oryza sativa (japonic...    60   6e-09 

 gi|17567279|ref|NP_509376.1|  CREB-binding protein like (XI780) [...    42   0.002 

 gi|19074594|ref|NP_586100.1|  MADS domain [Encephalitozoon cunicu...    41   0.004 


Sequences with E-value WORSE than threshold


 gi|32489490|emb|CAE03805.1|  OSJNBa0027H09.5 [Oryza sativa (japon...    40   0.007 

 gi|27260988|dbj|BAC45105.1|  OJ1705_C03.27 [Oryza sativa (japonic...    37   0.046 

 gi|25396635|pir||E89403  protein C06H5.4 [imported] - Caenorhabdi...    35   0.22  

 gi|17559186|ref|NP_507512.1|  predicted CDS, putative cytoplasmic...    35   0.23  

 gi|15230656|ref|NP_187904.1|  CREB-binding protein -related [Arab...    35   0.24  

 gi|34540349|ref|NP_904828.1|  conserved hypothetical protein [Por...    34   0.64  


Alignments








>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  193 bits (491), Expect = 6e-49
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
           AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117



>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  178 bits (452), Expect = 2e-44
 Identities = 117/148 (79%), Positives = 117/148 (79%), Gaps = 31/148 (20%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AARFEEKIFSGALNQ-------------------------------TDYLRKISMKMLTM 89
           AARFEEKIFSGALNQ                               TDYLRKISMKMLTM
Sbjct: 61  AARFEEKIFSGALNQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120

Query: 90  ETKSQNAAGSSAAIPAANNGTSIDSIPT 117
           ETKSQNAAGSSAAIPAANNGTSIDSIPT
Sbjct: 121 ETKSQNAAGSSAAIPAANNGTSIDSIPT 148



>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  170 bits (431), Expect = 4e-42
 Identities = 74/111 (66%), Positives = 94/111 (84%), Gaps = 2/111 (1%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MD NNWRP+ P GE  +DTGDWRTQL PDSRQ+IVNKIM+TLK+HLPFSG +G+NEL++I
Sbjct: 16  MDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKI 75

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111
           A RFEEKI++ A +Q+DYLRKIS+KML+ME+KSQNA  +S  + + N G+S
Sbjct: 76  AGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNS--LQSNNPGSS 124



>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  160 bits (406), Expect = 4e-39
 Identities = 64/120 (53%), Positives = 83/120 (69%), Gaps = 12/120 (10%)

Query: 5   NWRPSL-----------PNGE-PAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPE 52
           NWRP+            PN   PA+  GDWR+QL  ++R +IVNKIM+TLKKHLP S PE
Sbjct: 8   NWRPTQGADPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPE 67

Query: 53  GINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSI 112
           G+NEL++IA RFEEKI++ A +Q+DYLRKIS+KML+METK+Q   G++  I   N   S 
Sbjct: 68  GLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSE 127



>gi|24461860|gb|AAN62347.1|AF506028_14   CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score =  152 bits (386), Expect = 9e-37
 Identities = 62/92 (67%), Positives = 77/92 (83%)

Query: 9   SLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKI 68
           S   G   +D  DWR  L  DSRQ+IVNKIM+TLK+HLPFSGPEG+NEL+RIA RFEEKI
Sbjct: 4   SRQKGVAMLDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKI 63

Query: 69  FSGALNQTDYLRKISMKMLTMETKSQNAAGSS 100
           F+ A +Q+DYLRKIS+KML+ME++SQNA+GS+
Sbjct: 64  FTSATSQSDYLRKISLKMLSMESRSQNASGSN 95



>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
           [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score =  152 bits (384), Expect = 1e-36
 Identities = 64/101 (63%), Positives = 72/101 (71%)

Query: 16  AMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQ 75
              TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQ
Sbjct: 1   MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60

Query: 76  TDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIP 116
           T+YLR+I MKML METKSQNAAGSS+A           S+P
Sbjct: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVP 101



 Score = 97.8 bits (243), Expect = 3e-20
 Identities = 53/82 (64%), Positives = 65/82 (79%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEK 67
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA   EE 
Sbjct: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEEL 157

Query: 68  IFSGALNQTDYLRKISMKMLTM 89
           IF+ A+NQ DYL KIS+KM TM
Sbjct: 158 IFNSAINQEDYLGKISLKMRTM 179



>gi|7493813|pir||T18235   transcription activator GAL11 homolog - yeast (Candida albicans)
 gi|3859719|emb|CAA21993.1|   possible regulatory protein [Candida albicans]
          Length = 1145

 Score =  114 bits (285), Expect = 4e-25
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 10  LPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPE-GINELRRIAARFEEKI 68
              G  +     WR     + RQK+V  I+ TL + L  S P   +  L ++A  FE+ +
Sbjct: 11  QQMGGGSNPNASWRAMYSGEERQKVVQIIINTLTE-LHGSNPNFNVQRLSKMAQDFEKLV 69

Query: 69  FSGALNQTDYLRKISMKMLTMETKSQNAAGS 99
           +  + ++ DYLR I MK+  +  + Q  A +
Sbjct: 70  YERSASKEDYLRAIKMKVHQLRVQKQQIAAN 100



>gi|27260984|dbj|BAC45101.1|   OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score =  106 bits (266), Expect = 6e-23
 Identities = 24/64 (37%), Positives = 42/64 (65%)

Query: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80
          DWRT+L  D R ++   I+ +L+  L  +    + +L+++AAR EE+I+  A++  DYLR
Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71

Query: 81 KISM 84
          +IS+
Sbjct: 72 RISL 75



>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score =  100 bits (251), Expect = 4e-21
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 3  NNNWRPSLPNG--EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
          N NW+P+   G  + A +  DWR+Q  P+ RQK+++KI+E  K+         IN+   I
Sbjct: 4  NTNWKPNEQGGNRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---I 60

Query: 61 AARFEEKIFSGALNQT 76
          A++FEE  +S A ++T
Sbjct: 61 ASKFEENFYSIATDKT 76



>gi|7511830|pir||T13828   CREB-binding protein homolog - fruit fly (Drosophila melanogaster)
 gi|1916930|gb|AAB53050.1|   CREB-binding protein homolog [Drosophila melanogaster]
          Length = 3190

 Score = 98.6 bits (245), Expect = 2e-20
 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 13   GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEK 67
            G P  +  DWR  +  D R  +V+K+++ +    P S P  + +     L   A + E+ 
Sbjct: 934  GPPGDNEKDWRESVTADLRNHLVHKLVQAI---FPTSDPTTMQDKRMHNLVSYAEKVEKD 990

Query: 68   IFSGALNQTDYLRKISMKMLTME 90
            ++  A ++++Y   ++ K+  ++
Sbjct: 991  MYEMAKSRSEYYHLLAEKIYKIQ 1013



>gi|24640865|ref|NP_524642.2|   nejire CG15319-PB [Drosophila melanogaster]
 gi|22833041|gb|AAF46516.2|   CG15319-PB [Drosophila melanogaster]
          Length = 3276

 Score = 97.5 bits (242), Expect = 3e-20
 Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 13   GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEK 67
            G P  +  DWR  +  D R  +V+K+++ +    P S P  + +     L   A + E+ 
Sbjct: 934  GPPGDNEKDWRESVTADLRNHLVHKLVQAI---FPTSDPTTMQDKRMHNLVSYAEKVEKD 990

Query: 68   IFSGALNQTDYLRKISMKMLTME 90
            ++  A ++++Y   ++ K+  ++
Sbjct: 991  MYEMAKSRSEYYHLLAEKIYKIQ 1013



>gi|31204369|ref|XP_311133.1|   ENSANGP00000004748 [Anopheles gambiae]
 gi|30178093|gb|EAA06516.2|   ENSANGP00000004748 [Anopheles gambiae str. PEST]
          Length = 2572

 Score = 75.1 bits (184), Expect = 2e-13
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 13  GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEK 67
             P   T DW   + PD R  +V+K+++ +    P   P  + +     L   A + E  
Sbjct: 736 AVPVQGTKDWHHSVTPDLRNHLVHKLVQAI---FPSPDPSAMFDKRMYNLVAYAKKVEGD 792

Query: 68  IFSGALNQTDYLRKISMKMLTME 90
           ++  A ++++Y   ++ K+  ++
Sbjct: 793 MYEMANSRSEYYHLLAEKIYKIQ 815



>gi|2133462|pir||S60123   hypothetical protein R10E11.1 - Caenorhabditis elegans
          Length = 2027

 Score = 74.7 bits (183), Expect = 3e-13
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN-----ELRRIAA 62
           P+LP  +    T +W  Q+  D R  +V K+++ +    P    E +N     +L   A 
Sbjct: 584 PNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLVKAI---FPEPNQEAMNDNRLKDLIAYAR 640

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQN------AAGSSAAIPAANNGTSI 112
           + E+++F  A ++ +Y   ++ K+  ++ + Q         G++A    A   ++ 
Sbjct: 641 KVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNSRLNQGAAAHDQYAIPPSNE 696



>gi|17552708|ref|NP_499161.1|   CBP/p300 homolog (cbp-1) [Caenorhabditis elegans]
 gi|14530537|emb|CAA82353.2|   C. elegans CBP-1 protein (corresponding sequence R10E11.1a)
           [Caenorhabditis elegans]
          Length = 2045

 Score = 74.3 bits (182), Expect = 3e-13
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN-----ELRRIAA 62
           P+LP  +    T +W  Q+  D R  +V K+++ +    P    E +N     +L   A 
Sbjct: 573 PNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLVKAI---FPEPNQEAMNDNRLKDLIAYAR 629

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQN------AAGSSAAIPAANNGTSI 112
           + E+++F  A ++ +Y   ++ K+  ++ + Q         G++A    A   ++ 
Sbjct: 630 KVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNSRLNQGAAAHDQYAIPPSNE 685



>gi|17552710|ref|NP_499160.1|   CBP/p300 homolog (cbp-1) [Caenorhabditis elegans]
 gi|20455476|sp|P34545|CBP1_CAEEL   Protein cbp-1
 gi|25299632|pir||G88564   protein R10E11.1 [imported] - Caenorhabditis elegans
 gi|17645979|emb|CAD18875.1|   C. elegans CBP-1 protein (corresponding sequence R10E11.1b)
           [Caenorhabditis elegans]
          Length = 2056

 Score = 74.3 bits (182), Expect = 3e-13
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN-----ELRRIAA 62
           P+LP  +    T +W  Q+  D R  +V K+++ +    P    E +N     +L   A 
Sbjct: 584 PNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLVKAI---FPEPNQEAMNDNRLKDLIAYAR 640

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQN------AAGSSAAIPAANNGTSI 112
           + E+++F  A ++ +Y   ++ K+  ++ + Q         G++A    A   ++ 
Sbjct: 641 KVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNSRLNQGAAAHDQYAIPPSNE 696



>gi|21307831|gb|AAL54859.1|   CREB-binding protein [Aplysia californica]
          Length = 2245

 Score = 72.8 bits (178), Expect = 1e-12
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAA 62
           P +    P     DW  Q+  D R  +V+K+++ +    P      + +     L   A 
Sbjct: 491 PDIVKSIPVSSRKDWHAQVTQDLRNHLVHKLVQAI---FPTPDQATLRDSRMKNLVAYAR 547

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANN 108
           + E  ++  A N+  Y   ++ K+  ++ + +        +  A N
Sbjct: 548 KVEGDMYESANNRGQYYHLLAEKIYKIQKELEEKRIQRMKVQNAPN 593



>gi|4758056|ref|NP_004371.1|   CREB binding protein [Homo sapiens]
 gi|3023440|sp|Q92793|CBP_HUMAN   CREB-binding protein
 gi|2443859|gb|AAC51770.1|   CREB-binding protein
          Length = 2442

 Score = 71.6 bits (175), Expect = 2e-12
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 20/113 (17%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 589 RKGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645

Query: 74  NQTDYLRKISMKMLTMETK----------SQNAAGSSAAIPAANNGTSIDSIP 116
           ++ +Y   ++ K+  ++ +           Q   G+  A+PA   G     IP
Sbjct: 646 SRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPA--PGAQPPVIP 696



>gi|4321116|gb|AAC51331.2|   CREB-binding protein [Homo sapiens]
          Length = 2442

 Score = 71.6 bits (175), Expect = 2e-12
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 20/113 (17%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 589 RKGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645

Query: 74  NQTDYLRKISMKMLTMETK----------SQNAAGSSAAIPAANNGTSIDSIP 116
           ++ +Y   ++ K+  ++ +           Q   G+  A+PA   G     IP
Sbjct: 646 SRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPA--PGAQPPVIP 696



>gi|631119|pir||S39162   transcription coactivator CREB-binding protein - human
          Length = 2440

 Score = 71.3 bits (174), Expect = 3e-12
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 20/113 (17%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 589 RKGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645

Query: 74  NQTDYLRKISMKMLTMETK----------SQNAAGSSAAIPAANNGTSIDSIP 116
           ++ +Y   ++ K+  ++ +           Q   G+  A+PA   G     IP
Sbjct: 646 SRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPA--PGAQPPVIP 696



>gi|737920|prf||1923401A   protein CBP
          Length = 2441

 Score = 70.1 bits (171), Expect = 7e-12
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 20/113 (17%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W  ++  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 588 RKGWHERVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 644

Query: 74  NQTDYLRKISMKMLTMETK----------SQNAAGSSAAIPAANNGTSIDSIP 116
           ++ +Y   ++ K+  ++ +           Q   G+  A+PA+  G     IP
Sbjct: 645 SRDEYYHLLAEKIYKIQKELEEKRRTRLHKQGILGNQPALPAS--GAQPPVIP 695



>gi|4139873|pdb|1KDX|A   Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protein) In
          Complex With Phosphorylated Kinase Inducible Domain
          (Pkid) Of Rat Creb (Cyclic Amp Response Element Binding
          Protein), Nmr 17 Structures
          Length = 81

 Score = 69.7 bits (170), Expect = 8e-12
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 19 TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
             W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 3  RKGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 59

Query: 74 NQTDYLRKISMKMLTME 90
          ++ +Y   ++ K+  ++
Sbjct: 60 SRDEYYHLLAEKIYKIQ 76



>gi|1345703|sp|P45481|CBP_MOUSE   CREB-binding protein
 gi|481698|pir||S39161   CREB-binding protein - mouse
 gi|435855|gb|AAB28651.1|   CREB-binding protein; CBP [Mus sp.]
          Length = 2441

 Score = 68.6 bits (167), Expect = 2e-11
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 20/113 (17%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 588 RKGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 644

Query: 74  NQTDYLRKISMKMLTMETK----------SQNAAGSSAAIPAANNGTSIDSIP 116
           ++ +Y   ++ K+  ++ +           Q   G+  A+PA+  G     IP
Sbjct: 645 SRDEYYHLLAEKIYKIQKELEEKRRTRLHKQGILGNQPALPAS--GAQPPVIP 695



>gi|27666550|ref|XP_235770.1|   similar to E1A-associated protein p300 [Rattus norvegicus]
          Length = 1605

 Score = 68.6 bits (167), Expect = 2e-11
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 197 RKQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESAN 253

Query: 74  NQTDYLRKISMKMLTM----ETKSQNAAGSSAAIPAANNGTSID 113
           N+ +Y   ++ K+  +    E K +        +P+A     + 
Sbjct: 254 NRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPSAPGMVPVP 297



>gi|19547885|gb|AAL87531.1|   CREB-binding protein [Mus musculus]
 gi|19547887|gb|AAL87532.1|   CREB-binding protein [Mus musculus]
          Length = 2429

 Score = 68.6 bits (167), Expect = 2e-11
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 20/113 (17%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 582 RKGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 638

Query: 74  NQTDYLRKISMKMLTMETK----------SQNAAGSSAAIPAANNGTSIDSIP 116
           ++ +Y   ++ K+  ++ +           Q   G+  A+PA+  G     IP
Sbjct: 639 SRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPAS--GAQPPVIP 689



>gi|31753089|gb|AAH53889.1|   Unknown (protein for IMAGE:6151364) [Homo sapiens]
          Length = 1553

 Score = 68.2 bits (166), Expect = 3e-11
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 19/114 (16%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 568 RKQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESAN 624

Query: 74  NQTDYLRKISMKMLTME----------TKSQNAAGSSA-AIPAANNGTSIDSIP 116
           N+ +Y   ++ K+  ++           + QN   ++A  +P + N       P
Sbjct: 625 NRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAGMVPVSMNPGPNMGQP 678



>gi|2996629|gb|AAC08447.1|   CBP [Homo sapiens]
          Length = 555

 Score = 68.2 bits (166), Expect = 3e-11
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 20/113 (17%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 323 RKGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 379

Query: 74  NQTDYLRKISMKMLTMETK----------SQNAAGSSAAIPAANNGTSIDSIP 116
           ++ +Y   ++ K+  ++ +           Q   G+  A+PA   G     IP
Sbjct: 380 SRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPA--PGAQPPVIP 430



>gi|4557557|ref|NP_001420.1|   E1A binding protein p300; E1A-binding protein, 300kD [Homo sapiens]
 gi|3024341|sp|Q09472|P300_HUMAN   E1A-associated protein p300
 gi|627657|pir||A54277   transcription adaptor protein p300 - human
 gi|495301|gb|AAA18639.1|   p300 protein
          Length = 2414

 Score = 67.8 bits (165), Expect = 3e-11
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 19/114 (16%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 568 RKQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESAN 624

Query: 74  NQTDYLRKISMKMLTME----------TKSQNAAGSSA-AIPAANNGTSIDSIP 116
           N+ +Y   ++ K+  ++           + QN   ++A  +P + N       P
Sbjct: 625 NRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAGMVPVSMNPGPNMGQP 678



>gi|547239|gb|AAB31182.1|   p300=transcription coactivator {N-terminal} [mice, Peptide Partial,
           688 aa]
          Length = 688

 Score = 67.4 bits (164), Expect = 4e-11
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 569 RKQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESAN 625

Query: 74  NQTDYLRKISMKMLTM----ETKSQNAAGSSAAIPAANNGTSID 113
           N+ +Y   ++ K+  +    E K +        +P A     + 
Sbjct: 626 NRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAPGMGPVP 669



>gi|27663074|ref|XP_235502.1|   similar to E1A-associated protein p300 [Rattus norvegicus]
          Length = 2156

 Score = 67.0 bits (163), Expect = 6e-11
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 197 RKQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESAN 253

Query: 74  NQTDYLRKISMKMLTM----ETKSQNAAGSSAAIPAANNGTSID 113
           N+ +Y   ++ K+  +    E K +        +P+A     + 
Sbjct: 254 NRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPSAPGMVPVP 297



>gi|28486616|ref|XP_283295.1|   similar to E1A-associated protein p300 [Mus musculus]
 gi|29244384|ref|NP_808489.1|   hypothetical protein A730011L11 [Mus musculus]
 gi|26335221|dbj|BAC31311.1|   unnamed protein product [Mus musculus]
          Length = 714

 Score = 66.3 bits (161), Expect = 1e-10
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 569 RKQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESAN 625

Query: 74  NQTDYLRKISMKMLTM----ETKSQNAAGSSAAIPAANNGTSID 113
           N+ +Y   ++ K+  +    E K +        +P A     + 
Sbjct: 626 NRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAPGMGPVP 669



>gi|27881767|gb|AAH44677.1|   Similar to CREB binding protein (Rubinstein-Taybi syndrome)
           [Xenopus laevis]
          Length = 1047

 Score = 64.3 bits (156), Expect = 3e-10
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 21/114 (18%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEKIFSGAL 73
              W   +  D R  +V+K+++ +    P   P  + +     L   A + E  ++  A 
Sbjct: 578 RKAWHEHVTQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESAN 634

Query: 74  NQTDYLRKISMKMLTME----------TKSQNAAGSSAAIPAANNGTSIDSIPT 117
           ++ +Y   ++ K+  ++           + Q    S A + A     +  +  T
Sbjct: 635 SRDEYYHFLAEKIYKIQKELEEKRRSRLQKQGIMSSQAPLQA---PGAQPTALT 685



>gi|17554044|ref|NP_499201.1|   CREB-binding protein like family member (36.7 kD) (3L15)
           [Caenorhabditis elegans]
 gi|25395947|pir||D88569   protein K03H1.10 [imported] - Caenorhabditis elegans
 gi|3877003|emb|CAA82940.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
 gi|3878179|emb|CAA82665.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
          Length = 322

 Score = 63.2 bits (153), Expect = 9e-10
 Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEK 67
           P++P     + T +W  Q+  D R  IV K+++ +           + +L   A + E++
Sbjct: 160 PNVP-----VRTKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYARKVEKE 214

Query: 68  IFSGALNQTDYLRKISMKMLTMETKSQ 94
           +F  A+++ +Y   ++ K+  ++ + Q
Sbjct: 215 VFETAIDRKNYYHLLAEKIYEIQKELQ 241



>gi|482238|pir||S41033   hypothetical protein K03H1.10 - Caenorhabditis elegans  (fragment)
          Length = 316

 Score = 63.2 bits (153), Expect = 9e-10
 Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEK 67
           P++P     + T +W  Q+  D R  IV K+++ +           + +L   A + E++
Sbjct: 154 PNVP-----VRTKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYARKVEKE 208

Query: 68  IFSGALNQTDYLRKISMKMLTMETKSQ 94
           +F  A+++ +Y   ++ K+  ++ + Q
Sbjct: 209 VFETAIDRKNYYHLLAEKIYEIQKELQ 235



>gi|27260985|dbj|BAC45102.1|   OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)]
          Length = 87

 Score = 60.5 bits (146), Expect = 6e-09
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 39 METLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQ 75
          M  L+  L  +    + +L+++AAR EE+I+  A++ 
Sbjct: 39 MPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75



>gi|17567279|ref|NP_509376.1|   CREB-binding protein like (XI780) [Caenorhabditis elegans]
 gi|7499689|pir||T16139   hypothetical protein F22F1.3 - Caenorhabditis elegans
 gi|1118044|gb|AAA83283.1|   Hypothetical protein F22F1.3 [Caenorhabditis elegans]
          Length = 295

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 24  TQLPPDSRQKIVNKIM-ETLKKHLPFSGPEG---INELRRIAARFEEKIFSGALNQTDYL 79
           + L    RQ ++ KI+ E + +  P S  +    + EL+  A   E+K F     + +Y 
Sbjct: 64  STLERGLRQYMITKIVREAVPR--PNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYY 121

Query: 80  RKISMKMLTMETKSQNAAGSSAAIPAAN-NGTSI 112
            +++  +L+M+   Q+    S   P +N   +  
Sbjct: 122 AELARIILSMQKHLQSRPKGSYEDPYSNIPPSHE 155



>gi|19074594|ref|NP_586100.1|   MADS domain [Encephalitozoon cuniculi]
 gi|19069236|emb|CAD25704.1|   MADS domain [Encephalitozoon cuniculi]
          Length = 776

 Score = 40.8 bits (95), Expect = 0.004
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 25 QLPPDSRQKIVNKIMETLKKH--LPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKI 82
           L  + R++++ K+   LK+    P   P  I E    A R E++I+  + ++ +YLR +
Sbjct: 1  MLSQEERKQMILKLFVALKESNIFPGYTPVQIKEA---AIRAEQRIYEESGSKEEYLRGM 57

Query: 83 SMKMLTME 90
            +   +E
Sbjct: 58 DERFQRIE 65



>gi|32489490|emb|CAE03805.1|   OSJNBa0027H09.5 [Oryza sativa (japonica cultivar-group)]
          Length = 1392

 Score = 40.1 bits (93), Expect = 0.007
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 15  PAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALN 74
            ++    W        R+ I+N +++               E++  A R E+   +   N
Sbjct: 12  SSVSAAHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNKTTN 71

Query: 75  QTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSI 112
           + DYLR I+ +++ ME K +     S ++ A    ++ 
Sbjct: 72  KEDYLRCIAQRIMNMEMKVRR----SQSLQAGTTPSTQ 105



>gi|27260988|dbj|BAC45105.1|   OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)]
          Length = 194

 Score = 37.4 bits (86), Expect = 0.046
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 17 MDTGDWRTQLPPDSRQKIVNKIMET 41
           +  DWRT+L  D R ++ + I++ 
Sbjct: 8  DEGVDWRTRLGQDIRDRVTHDILQA 32



>gi|25396635|pir||E89403   protein C06H5.4 [imported] - Caenorhabditis elegans
          Length = 337

 Score = 35.1 bits (80), Expect = 0.22
 Identities = 19/70 (27%), Positives = 30/70 (42%)

Query: 21  DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80
           DW+  +  + R K V KI+ T         P  I+EL   +   E   +S A N+  Y  
Sbjct: 177 DWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRYLYDG 236

Query: 81  KISMKMLTME 90
            I   + +M+
Sbjct: 237 GIESMIQSMQ 246



>gi|17559186|ref|NP_507512.1|   predicted CDS, putative cytoplasmic protein (5S403) [Caenorhabditis
           elegans]
 gi|7498278|pir||T20398   hypothetical protein E01B7.2 - Caenorhabditis elegans
 gi|5824421|emb|CAB54214.1|   Hypothetical protein E01B7.2 [Caenorhabditis elegans]
          Length = 230

 Score = 35.1 bits (80), Expect = 0.23
 Identities = 19/70 (27%), Positives = 30/70 (42%)

Query: 21  DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80
           DW+  +  + R K V KI+ T         P  I+EL   +   E   +S A N+  Y  
Sbjct: 56  DWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRYLYDG 115

Query: 81  KISMKMLTME 90
            I   + +M+
Sbjct: 116 GIESMIQSMQ 125



>gi|15230656|ref|NP_187904.1|   CREB-binding protein -related [Arabidopsis thaliana]
 gi|15795129|dbj|BAB02507.1|   CREB-binding protein-like [Arabidopsis thaliana]
          Length = 1670

 Score = 35.1 bits (80), Expect = 0.24
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 30  SRQKIVNKIMETLKKHLPF-SGPEGINELRRIAARFEEKIFSGALNQTDYLR------KI 82
            RQ+++N+    L++  P  +      +L  +A R E  ++  A ++ DYL       ++
Sbjct: 43  LRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYLDFRSFDVRV 102

Query: 83  SMKMLTMETKSQNAAGSSAAIPAANNGTS 111
              +  + ++ +    SS +      G S
Sbjct: 103 ESTLKQLLSQRRANPSSSVSTMVQTPGVS 131



>gi|34540349|ref|NP_904828.1|   conserved hypothetical protein [Porphyromonas gingivalis W83]
 gi|34396661|gb|AAQ65727.1|   conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 206

 Score = 33.5 bits (76), Expect = 0.64
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 33  KIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETK 92
           + +NK +    +    +    +  +++ A  F+ ++ + A    D  R    K+L M+ +
Sbjct: 63  RDMNKQLAAEAEQNQRTLATKMTAMQKAAEDFQRRLRTNAFTSEDAARVEQEKILKMQEE 122

Query: 93  SQ-------NAAGSSAAIPA 105
            Q        A  +  A   
Sbjct: 123 GQRLELSMTQALANKQAEAN 142






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Sep 15, 2003 10:23 PM
  Number of letters in database: 490,690,828
  Number of sequences in database:  1,524,159
  
Lambda     K      H
   0.311    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0468    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,937,738
Number of Sequences: 1524159
Number of extensions: 489974
Number of successful extensions: 1124
Number of sequences better than  1.0: 2
Number of HSP's better than  1.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 2
length of query: 117
length of database: 490,690,828
effective HSP length: 93
effective length of query: 24
effective length of database: 348,944,041
effective search space: 8374656984
effective search space used: 8374656984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.3 bits)