BLASTP 2.2.6 [Apr-09-2003]

RID: 1063991200-23361-1237933.BLASTQ3

Query= NP_173030
         (117 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,524,159 sequences; 490,690,828 total letters



Results of PSI-Blast iteration 1

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|15218294|ref|NP_173030.1|  expressed protein [Arabidopsis thal...   221   2e-57 

 gi|25511635|pir||B86292  F7H2.12 protein - Arabidopsis thaliana >...   207   4e-53 

 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]    143   6e-34 

 gi|24461860|gb|AAN62347.1|AF506028_14  CTV.20 [Poncirus trifoliata]    131   3e-30 

 gi|22329593|ref|NP_173031.2|  expressed protein [Arabidopsis thal...   117   5e-26 

 gi|28071313|dbj|BAC56002.1|  P0705A05.20 [Oryza sativa (japonica ...   115   1e-25 

 gi|27260984|dbj|BAC45101.1|  OJ1705_C03.23 [Oryza sativa (japonic...    52   1e-06 

 gi|15226772|ref|NP_178842.1|  hypothetical protein [Arabidopsis t...    47   7e-05 


Sequences with E-value WORSE than threshold


 gi|7493813|pir||T18235  transcription activator GAL11 homolog - y...    39   0.013 

 gi|28899674|ref|NP_799279.1|  hypothetical protein [Vibrio paraha...    35   0.24  

 gi|17554044|ref|NP_499201.1|  CREB-binding protein like family me...    33   0.66  

 gi|482238|pir||S41033  hypothetical protein K03H1.10 - Caenorhabd...    33   0.67  


Alignments








>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  221 bits (564), Expect = 2e-57
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
           AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117



>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  207 bits (526), Expect = 4e-53
 Identities = 117/148 (79%), Positives = 117/148 (79%), Gaps = 31/148 (20%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AARFEEKIFSGALNQ-------------------------------TDYLRKISMKMLTM 89
           AARFEEKIFSGALNQ                               TDYLRKISMKMLTM
Sbjct: 61  AARFEEKIFSGALNQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120

Query: 90  ETKSQNAAGSSAAIPAANNGTSIDSIPT 117
           ETKSQNAAGSSAAIPAANNGTSIDSIPT
Sbjct: 121 ETKSQNAAGSSAAIPAANNGTSIDSIPT 148



>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  143 bits (360), Expect = 6e-34
 Identities = 74/111 (66%), Positives = 94/111 (84%), Gaps = 2/111 (1%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MD NNWRP+ P GE  +DTGDWRTQL PDSRQ+IVNKIM+TLK+HLPFSG +G+NEL++I
Sbjct: 16  MDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKI 75

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111
           A RFEEKI++ A +Q+DYLRKIS+KML+ME+KSQNA  +S  + + N G+S
Sbjct: 76  AGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNS--LQSNNPGSS 124



>gi|24461860|gb|AAN62347.1|AF506028_14   CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score =  131 bits (329), Expect = 3e-30
 Identities = 62/92 (67%), Positives = 77/92 (83%)

Query: 9   SLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKI 68
           S   G   +D  DWR  L  DSRQ+IVNKIM+TLK+HLPFSGPEG+NEL+RIA RFEEKI
Sbjct: 4   SRQKGVAMLDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKI 63

Query: 69  FSGALNQTDYLRKISMKMLTMETKSQNAAGSS 100
           F+ A +Q+DYLRKIS+KML+ME++SQNA+GS+
Sbjct: 64  FTSATSQSDYLRKISLKMLSMESRSQNASGSN 95



>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
           [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score =  117 bits (292), Expect = 5e-26
 Identities = 62/84 (73%), Positives = 69/84 (82%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDY 78
           TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQT+Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 79  LRKISMKMLTMETKSQNAAGSSAA 102
           LR+I MKML METKSQNAAGSS+A
Sbjct: 64  LRQICMKMLNMETKSQNAAGSSSA 87




 Score =  102 bits (254), Expect = 1e-21
 Identities = 53/82 (64%), Positives = 65/82 (79%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEK 67
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA   EE 
Sbjct: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEEL 157

Query: 68  IFSGALNQTDYLRKISMKMLTM 89
           IF+ A+NQ DYL KIS+KM TM
Sbjct: 158 IFNSAINQEDYLGKISLKMRTM 179



>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  115 bits (288), Expect = 1e-25
 Identities = 63/115 (54%), Positives = 82/115 (71%), Gaps = 12/115 (10%)

Query: 5   NWRPSL-----------PNG-EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPE 52
           NWRP+            PN   PA+  GDWR+QL  ++R +IVNKIM+TLKKHLP S PE
Sbjct: 8   NWRPTQGADPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPE 67

Query: 53  GINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAAN 107
           G+NEL++IA RFEEKI++ A +Q+DYLRKIS+KML+METK+Q   G++  I   N
Sbjct: 68  GLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQN 122



>gi|27260984|dbj|BAC45101.1|   OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 24/64 (37%), Positives = 42/64 (65%)

Query: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80
          DWRT+L  D R ++   I+ +L+  L  +    + +L+++AAR EE+I+  A++  DYLR
Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71

Query: 81 KISM 84
          +IS+
Sbjct: 72 RISL 75



>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 3  NNNWRPSLPNG--EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
          N NW+P+   G  + A +  DWR+Q  P+ RQK+++KI+E  K+         IN+   I
Sbjct: 4  NTNWKPNEQGGNRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---I 60

Query: 61 AARFEEKIFSGALNQT 76
          A++FEE  +S A ++T
Sbjct: 61 ASKFEENFYSIATDKT 76



>gi|7493813|pir||T18235   transcription activator GAL11 homolog - yeast (Candida albicans)
 gi|3859719|emb|CAA21993.1|   possible regulatory protein [Candida albicans]
          Length = 1145

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 22  WRTQLPPDSRQKIVNKIMETLKKHLPFSGPE-GINELRRIAARFEEKIFSGALNQTDYLR 80
           WR     + RQK+V  I+ TL + L  S P   +  L ++A  FE+ ++  + ++ DYLR
Sbjct: 23  WRAMYSGEERQKVVQIIINTLTE-LHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLR 81

Query: 81  KISMKMLTMETKSQNAAGS 99
            I MK+  +  + Q  A +
Sbjct: 82  AIKMKVHQLRVQKQQIAAN 100



>gi|28899674|ref|NP_799279.1|   hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807926|dbj|BAC61163.1|   hypothetical protein [Vibrio parahaemolyticus]
          Length = 500

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 4   NNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAAR 63
           N W  S+ +  P +    W+     D    +V+ I++ L++HLP    + I  L+  A R
Sbjct: 74  NRWIDSIKDAHPVVYIDAWKQDYSDDPMLTVVSSIIDALEEHLPAGNKKAI-ALKNKATR 132

Query: 64  F 64
           F
Sbjct: 133 F 133



>gi|17554044|ref|NP_499201.1|   CREB-binding protein like family member (36.7 kD) (3L15)
           [Caenorhabditis elegans]
 gi|25395947|pir||D88569   protein K03H1.10 [imported] - Caenorhabditis elegans
 gi|3877003|emb|CAA82940.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
 gi|3878179|emb|CAA82665.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
          Length = 322

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 9   SLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELR-----RIAAR 63
           +LP     + T +W  Q+  D R  IV K+++ +        PE +N++R       A +
Sbjct: 156 NLPPPNVPVRTKEWHRQVTNDLRNHIVGKLVKAI-----CPAPEMMNDIRLKDLNAYARK 210

Query: 64  FEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGS 99
            E+++F  A+++ +Y   ++ K+  ++ + Q    S
Sbjct: 211 VEKEVFETAIDRKNYYHLLAEKIYEIQKELQEKKNS 246



>gi|482238|pir||S41033   hypothetical protein K03H1.10 - Caenorhabditis elegans  (fragment)
          Length = 316

 Score = 33.5 bits (75), Expect = 0.67
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 9   SLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELR-----RIAAR 63
           +LP     + T +W  Q+  D R  IV K+++ +        PE +N++R       A +
Sbjct: 150 NLPPPNVPVRTKEWHRQVTNDLRNHIVGKLVKAI-----CPAPEMMNDIRLKDLNAYARK 204

Query: 64  FEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGS 99
            E+++F  A+++ +Y   ++ K+  ++ + Q    S
Sbjct: 205 VEKEVFETAIDRKNYYHLLAEKIYEIQKELQEKKNS 240






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Sep 15, 2003 10:23 PM
  Number of letters in database: 490,690,828
  Number of sequences in database:  1,524,159
  
Lambda     K      H
   0.311    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,535,345
Number of Sequences: 1524159
Number of extensions: 416977
Number of successful extensions: 822
Number of sequences better than  1.0: 0
Number of HSP's better than  1.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 0
length of query: 117
length of database: 490,690,828
effective HSP length: 93
effective length of query: 24
effective length of database: 348,944,041
effective search space: 8374656984
effective search space used: 8374656984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 74 (33.1 bits)