BLASTP 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1056973276-028629-8072

Query= At1g15790 [1-145]
         (145 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,459,938 sequences; 468,778,868 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs



Results of PSI-Blast iteration 4

Skip to the first new sequence

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
Related Structures
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|22329593|ref|NP_173031.2|  expressed protein [Arabidopsis thal...   217   2e-56 

 gi|15218294|ref|NP_173030.1|  expressed protein [Arabidopsis thal...   167   3e-41 

 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]    161   1e-39 

 gi|21243753|ref|NP_643335.1|  transcriptional regulator [Xanthomo...   161   2e-39 

 gi|25511635|pir||B86292  F7H2.12 protein - Arabidopsis thaliana >...   151   1e-36 

 gi|24461860|gb|AAN62347.1|AF506028_14  CTV.20 [Poncirus trifoliata]    143   4e-34 

 gi|28071313|dbj|BAC56002.1|  P0705A05.20 [Oryza sativa (japonica ...   139   5e-33 

 gi|2133462|pir||S60123  hypothetical protein R10E11.1 - Caenorhab...   131   2e-30 

 gi|17552708|ref|NP_499161.1|  CBP/p300 homolog CBP-1 (cbp-1) [Cae...   131   3e-30 

 gi|17552710|ref|NP_499160.1|  CBP/p300 homolog CBP-1 (cbp-1) [Cae...   130   3e-30 

 gi|7493813|pir||T18235  transcription activator GAL11 homolog - y...   106   8e-23 

 gi|27260984|dbj|BAC45101.1|  OJ1705_C03.23 [Oryza sativa (japonic...   101   2e-21 

 gi|7511830|pir||T13828  CREB-binding protein homolog - fruit fly ...    98   2e-20 

 gi|24640865|ref|NP_524642.2|  nejire CG15319-PB [Drosophila melan...    97   4e-20 

 gi|482238|pir||S41033  hypothetical protein K03H1.10 - Caenorhabd...    90   4e-18 

 gi|17554044|ref|NP_499201.1|  TAZ zinc finger and KIX domain cont...    90   5e-18 

 gi|21307831|gb|AAL54859.1|  CREB-binding protein [Aplysia califor...    88   3e-17 

 gi|31204369|ref|XP_311133.1|  ENSANGP00000004748 [Anopheles gambi...    86   8e-17 

 gi|31753089|gb|AAH53889.1|  Unknown (protein for IMAGE:6151364) [...    85   2e-16 

 gi|4557557|ref|NP_001420.1|  E1A binding protein p300; E1A-bindin...    84   4e-16 

 gi|27666550|ref|XP_235770.1|  similar to E1A-associated protein p...    83   8e-16 

 gi|4758056|ref|NP_004371.1|  CREB binding protein [Homo sapiens] ...    82   2e-15 

 gi|4321116|gb|AAC51331.2|  CREB-binding protein [Homo sapiens]          82   2e-15 

 gi|547239|gb|AAB31182.1|  p300=transcription coactivator {N-termi...    81   3e-15 

 gi|27663074|ref|XP_235502.1|  similar to E1A-associated protein p...    81   3e-15 

 gi|631119|pir||S39162  transcription coactivator CREB-binding pro...    81   4e-15 

 gi|28486616|ref|XP_283295.1|  similar to E1A-associated protein p...    79   8e-15 

 gi|737920|prf||1923401A  protein CBP                                    79   1e-14 

 gi|2996629|gb|AAC08447.1|  CBP [Homo sapiens]                           79   1e-14 

 gi|19547885|gb|AAL87531.1|  CREB-binding protein [Mus musculus] >...    79   1e-14 

 gi|27881767|gb|AAH44677.1|  Similar to CREB binding protein (Rubi...    78   2e-14 

 gi|1345703|sp|P45481|CBP_MOUSE  CREB-binding protein >gi|481698|p...    77   4e-14 

 gi|15226772|ref|NP_178842.1|  hypothetical protein [Arabidopsis t...    75   2e-13 

 gi|4139873|pdb|1KDX|A  Chain A, Kix Domain Of Mouse Cbp (Creb Bin...    74   3e-13 

 gi|27260985|dbj|BAC45102.1|  OJ1705_C03.24 [Oryza sativa (japonic...    56   8e-08 

 gi|17508323|ref|NP_493339.1|  KIX domain containing protein famil...    43   0.001 

 gi|23127315|ref|ZP_00109188.1|  hypothetical protein [Nostoc punc...    41   0.003 


Sequences with E-value WORSE than threshold


 gi|24375159|ref|NP_719202.1|  sigma-54 dependent transcriptional ...    40   0.007 

 gi|19074594|ref|NP_586100.1|  MADS domain [Encephalitozoon cunicu...    39   0.016 

 gi|27260988|dbj|BAC45105.1|  OJ1705_C03.27 [Oryza sativa (japonic...    38   0.025 

 gi|7487910|pir||T01055  hypothetical protein YUP8H12R.38 - Arabid...    38   0.026 

 gi|17549180|ref|NP_522520.1|  PROBABLE SIGMA-54 INTERACTING TRANS...    38   0.028 

 gi|18412221|ref|NP_565197.1|  p300/CBP acetyltransferase-related ...    38   0.034 

 gi|17567279|ref|NP_509376.1|  KIX domain containing protein famil...    38   0.038 

 gi|17559186|ref|NP_507512.1|  Predicted CDS, putative cytoplasmic...    38   0.038 

 gi|25396635|pir||E89403  protein C06H5.4 [imported] - Caenorhabdi...    37   0.049 

 gi|15219327|ref|NP_173115.1|  expressed protein [Arabidopsis thal...    36   0.082 

 gi|22999605|ref|ZP_00043576.1|  hypothetical protein [Magnetococc...    36   0.085 

 gi|25148761|ref|NP_741151.1|  Putative nuclear protein, nematode ...    34   0.50  

 gi|17552402|ref|NP_497144.1|  TAZ zinc finger family member [Caen...    34   0.54  


Alignments








>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
           [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score =  217 bits (554), Expect = 2e-56
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60
           MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ
Sbjct: 1   MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60

Query: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS 120
           TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS
Sbjct: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS 120

Query: 121 RQKNINALLDTLKKIVPHSGKEGID 145
           RQKNINALLDTLKKIVPHSGKEGID
Sbjct: 121 RQKNINALLDTLKKIVPHSGKEGID 145




 Score = 87.6 bits (216), Expect = 3e-17
 Identities = 34/72 (47%), Positives = 47/72 (65%)

Query: 3   TTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTE 62
            TGDWRTQ P  SR + +N +++T  K +P    EG +EL +IAV  EE +FN+A NQ +
Sbjct: 108 NTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQED 167

Query: 63  YLRQICMKMLNM 74
           YL +I +KM  M
Sbjct: 168 YLGKISLKMRTM 179



>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  167 bits (423), Expect = 3e-41
 Identities = 69/118 (58%), Positives = 80/118 (67%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQT+Y
Sbjct: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDY 78

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSR 121
           LR+I MKML METKSQNAAGSS+A           S+P N+  +  G   T Q Q  +
Sbjct: 79  LRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPTNQGQLLPGSLSTNQSQAPQ 136




 Score = 80.3 bits (197), Expect = 5e-15
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+
Sbjct: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN 55



>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  161 bits (409), Expect = 1e-39
 Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 6/135 (4%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           TGDWRTQ    SR RIVNKIM+T  + LPF   +G NEL+KIA RFEEK++  AS+Q++Y
Sbjct: 34  TGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDY 93

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPN------NEPAVNTGDWRTQQP 117
           LR+I +KML+ME+KSQNA  +S   +N       P   +      N+           Q 
Sbjct: 94  LRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPGSMQNQVHNQGQSLPIPLSANQS 153

Query: 118 QDSRQKNINALLDTL 132
           Q  +Q     + + +
Sbjct: 154 QVRQQLLSQNIQNNM 168




 Score = 78.3 bits (192), Expect = 2e-14
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           P+ P  E  ++TGDWRTQ   DSRQ+ +N ++DTLK+ +P SG++G++
Sbjct: 23  PTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLN 70



>gi|21243753|ref|NP_643335.1|   transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109340|gb|AAM37871.1|   transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 534

 Score =  161 bits (407), Expect = 2e-39
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 11/131 (8%)

Query: 10  QFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQICM 69
           +        +   +M+       +  PE   EL ++ +R             + +++   
Sbjct: 319 RHGLDHGQVVTEVLMDALT---HYSWPENLQELERVVLRLAVMTAGRPIGSAD-IQRHAP 374

Query: 70  KMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSRQKNINALL 129
           ++L    K       ++       L  EP+ P         DW    P    Q+    L 
Sbjct: 375 RLLEGRVKGAQHDACATMSQ-PADLPAEPTPPGT-----PVDWIDGLPHRPGQRLAT-LH 427

Query: 130 DTLKKIVPHSG 140
           D L++ + H G
Sbjct: 428 DALRRALVHLG 438



>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  151 bits (383), Expect = 1e-36
 Identities = 69/149 (46%), Positives = 80/149 (53%), Gaps = 31/149 (20%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ--- 60
           TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQ   
Sbjct: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQRFV 78

Query: 61  ----------------------------TEYLRQICMKMLNMETKSQNAAGSSSADDNTP 92
                                       T+YLR+I MKML METKSQNAAGSS+A     
Sbjct: 79  RQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTMETKSQNAAGSSAAIPAAN 138

Query: 93  PLVPEPSVPNNEPAVNTGDWRTQQPQDSR 121
                 S+P N+  +  G   T Q Q  +
Sbjct: 139 NGTSIDSIPTNQGQLLPGSLSTNQSQAPQ 167




 Score = 80.7 bits (198), Expect = 4e-15
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+
Sbjct: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN 55



>gi|24461860|gb|AAN62347.1|AF506028_14   CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score =  143 bits (361), Expect = 4e-34
 Identities = 52/105 (49%), Positives = 71/105 (67%), Gaps = 7/105 (6%)

Query: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
           DWR      SR RIVNKIM+T  + LPF  PEG NEL++IA RFEEK+F +A++Q++YLR
Sbjct: 16  DWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYLR 75

Query: 66  QICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTG 110
           +I +KML+ME++SQNA+GS     N PP       P  +  ++T 
Sbjct: 76  KISLKMLSMESRSQNASGS-----NEPPHPGIK--PLTKEGLDTS 113




 Score = 81.0 bits (199), Expect = 2e-15
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 107 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           ++  DWR     DSRQ+ +N ++DTLK+ +P SG EG++
Sbjct: 12  LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLN 50



>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  139 bits (352), Expect = 5e-33
 Identities = 51/93 (54%), Positives = 68/93 (73%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64
           GDWR+Q  S +R+RIVNKIM+T  K LP   PEG NEL+KIAVRFEEK++  A++Q++YL
Sbjct: 35  GDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYL 94

Query: 65  RQICMKMLNMETKSQNAAGSSSADDNTPPLVPE 97
           R+I +KML+METK+Q   G++    N  P   E
Sbjct: 95  RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSE 127




 Score = 71.8 bits (175), Expect = 2e-12
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 11/70 (15%)

Query: 76  TKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKI 135
           T+  + A S   D N P            PA+  GDWR+Q   ++R + +N ++DTLKK 
Sbjct: 12  TQGADPAASGGIDPNAPA-----------PALAGGDWRSQLQSEARNRIVNKIMDTLKKH 60

Query: 136 VPHSGKEGID 145
           +P S  EG++
Sbjct: 61  LPVSVPEGLN 70



>gi|2133462|pir||S60123   hypothetical protein R10E11.1 - Caenorhabditis elegans
          Length = 2027

 Score =  131 bits (329), Expect = 2e-30
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 2   DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTN-----ELRKIAVRFEEKLFNN 56
           D T +W  Q     R+ +V K++       P    E  N     +L   A + E+++F +
Sbjct: 593 DCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFES 649

Query: 57  ASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNE 104
           A+++ EY   +  K+  ++ K      +S  +            P+NE
Sbjct: 650 ANDREEYYHLLAEKIYKIQ-KELQEKKNSRLNQGAAAHDQYAIPPSNE 696



>gi|17552708|ref|NP_499161.1|   CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans]
 gi|14530537|emb|CAA82353.2|   C. elegans CBP-1 protein (corresponding sequence R10E11.1a)
           [Caenorhabditis elegans]
          Length = 2045

 Score =  131 bits (329), Expect = 3e-30
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 2   DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTN-----ELRKIAVRFEEKLFNN 56
           D T +W  Q     R+ +V K++       P    E  N     +L   A + E+++F +
Sbjct: 582 DCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFES 638

Query: 57  ASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNE 104
           A+++ EY   +  K+  ++ K      +S  +            P+NE
Sbjct: 639 ANDREEYYHLLAEKIYKIQ-KELQEKKNSRLNQGAAAHDQYAIPPSNE 685



>gi|17552710|ref|NP_499160.1|   CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans]
 gi|20455476|sp|P34545|CBP1_CAEEL   Protein cbp-1
 gi|25299632|pir||G88564   protein R10E11.1 [imported] - Caenorhabditis elegans
 gi|17645979|emb|CAD18875.1|   C. elegans CBP-1 protein (corresponding sequence R10E11.1b)
           [Caenorhabditis elegans]
          Length = 2056

 Score =  130 bits (328), Expect = 3e-30
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 2   DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTN-----ELRKIAVRFEEKLFNN 56
           D T +W  Q     R+ +V K++       P    E  N     +L   A + E+++F +
Sbjct: 593 DCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFES 649

Query: 57  ASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNE 104
           A+++ EY   +  K+  ++ K      +S  +            P+NE
Sbjct: 650 ANDREEYYHLLAEKIYKIQ-KELQEKKNSRLNQGAAAHDQYAIPPSNE 696



>gi|7493813|pir||T18235   transcription activator GAL11 homolog - yeast (Candida albicans)
 gi|3859719|emb|CAA21993.1|   possible regulatory protein [Candida albicans]
          Length = 1145

 Score =  106 bits (264), Expect = 8e-23
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 7   WRTQFPSASRSRIVNKIMETQLKQLPFIRPE-GTNELRKIAVRFEEKLFNNASNQTEYLR 65
           WR  +    R ++V  I+ T   +L    P      L K+A  FE+ ++  ++++ +YLR
Sbjct: 23  WRAMYSGEERQKVVQIIINTLT-ELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLR 81

Query: 66  QICMKMLNMETKSQNAAGSSSADDNT 91
            I MK+  +  + Q  A +     N 
Sbjct: 82  AIKMKVHQLRVQKQQIAANQGGQINP 107



>gi|27260984|dbj|BAC45101.1|   OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score =  101 bits (253), Expect = 2e-21
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
          DWRT+     R R+   I+ +   +L         +L+K+A R EE+++  A +  +YLR
Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71

Query: 66 QICM 69
          +I +
Sbjct: 72 RISL 75



>gi|7511830|pir||T13828   CREB-binding protein homolog - fruit fly (Drosophila melanogaster)
 gi|1916930|gb|AAB53050.1|   CREB-binding protein homolog [Drosophila melanogaster]
          Length = 3190

 Score = 98.4 bits (244), Expect = 2e-20
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 2    DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNN 56
            D   DWR    +  R+ +V+K+++      P   P    +     L   A + E+ ++  
Sbjct: 938  DNEKDWRESVTADLRNHLVHKLVQAI---FPTSDPTTMQDKRMHNLVSYAEKVEKDMYEM 994

Query: 57   ASNQTEYLRQICMKMLNMETKSQNAA 82
            A +++EY   +  K+  ++ K     
Sbjct: 995  AKSRSEYYHLLAEKIYKIQ-KELEEK 1019



>gi|24640865|ref|NP_524642.2|   nejire CG15319-PB [Drosophila melanogaster]
 gi|22833041|gb|AAF46516.2|   CG15319-PB [Drosophila melanogaster]
          Length = 3276

 Score = 97.2 bits (241), Expect = 4e-20
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 2    DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNN 56
            D   DWR    +  R+ +V+K+++      P   P    +     L   A + E+ ++  
Sbjct: 938  DNEKDWRESVTADLRNHLVHKLVQAI---FPTSDPTTMQDKRMHNLVSYAEKVEKDMYEM 994

Query: 57   ASNQTEYLRQICMKMLNMETKSQNAA 82
            A +++EY   +  K+  ++ K     
Sbjct: 995  AKSRSEYYHLLAEKIYKIQ-KELEEK 1019



>gi|482238|pir||S41033   hypothetical protein K03H1.10 - Caenorhabditis elegans  (fragment)
          Length = 316

 Score = 90.3 bits (223), Expect = 4e-18
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           T +W  Q  +  R+ IV K+++        +      +L   A + E+++F  A ++  Y
Sbjct: 160 TKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDRKNY 219

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLV 95
              +  K+  ++ K      +S  +       
Sbjct: 220 YHLLAEKIYEIQ-KELQEKKNSRLNQGAAQSP 250



>gi|17554044|ref|NP_499201.1|   TAZ zinc finger and KIX domain containing protein family member
           (36.7 kD) [Caenorhabditis elegans]
 gi|25395947|pir||D88569   protein K03H1.10 [imported] - Caenorhabditis elegans
 gi|3877003|emb|CAA82940.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
 gi|3878179|emb|CAA82665.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
          Length = 322

 Score = 90.3 bits (223), Expect = 5e-18
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           T +W  Q  +  R+ IV K+++        +      +L   A + E+++F  A ++  Y
Sbjct: 166 TKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDRKNY 225

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLV 95
              +  K+  ++ K      +S  +       
Sbjct: 226 YHLLAEKIYEIQ-KELQEKKNSRLNQGAAQSP 256



>gi|21307831|gb|AAL54859.1|   CREB-binding protein [Aplysia californica]
          Length = 2245

 Score = 87.6 bits (216), Expect = 3e-17
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
            DW  Q     R+ +V+K+++      P        +     L   A + E  ++ +A+N
Sbjct: 503 KDWHAQVTQDLRNHLVHKLVQAI---FPTPDQATLRDSRMKNLVAYARKVEGDMYESANN 559

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSAD-DNTPPLVPEPSVPNNEPAVNT 109
           + +Y   +  K+  ++ K             N P       VP  +  ++ 
Sbjct: 560 RGQYYHLLAEKIYKIQ-KELEEKRIQRMKVQNAPN----AQVPGMQGQIHP 605



>gi|31204369|ref|XP_311133.1|   ENSANGP00000004748 [Anopheles gambiae]
 gi|30178093|gb|EAA06516.2|   ENSANGP00000004748 [Anopheles gambiae str. PEST]
          Length = 2572

 Score = 86.0 bits (212), Expect = 8e-17
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNAS 58
           T DW        R+ +V+K+++      P   P    +     L   A + E  ++  A+
Sbjct: 742 TKDWHHSVTPDLRNHLVHKLVQAI---FPSPDPSAMFDKRMYNLVAYAKKVEGDMYEMAN 798

Query: 59  NQTEYLRQICMKMLNMETKSQNAA 82
           +++EY   +  K+  ++ K     
Sbjct: 799 SRSEYYHLLAEKIYKIQ-KELEEK 821



>gi|31753089|gb|AAH53889.1|   Unknown (protein for IMAGE:6151364) [Homo sapiens]
          Length = 1553

 Score = 85.3 bits (210), Expect = 2e-16
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 24/141 (17%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        R+ +V+K+++      P   P    +     L   A + E  ++ +A+N
Sbjct: 569 KQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESANN 625

Query: 60  QTEYLRQICMKMLNM----------ETKSQNAAGSS------SADDNTPPLVPEPSVPNN 103
           + EY   +  K+  +            + QN   ++      S +       P+P + +N
Sbjct: 626 RAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAGMVPVSMNPGPNMGQPQPGMTSN 685

Query: 104 EPAVNTGDWRTQQPQDSRQKN 124
            P  +    R   P     + 
Sbjct: 686 GPLPDPSMIRGSVPNQMMPRI 706



>gi|4557557|ref|NP_001420.1|   E1A binding protein p300; E1A-binding protein, 300kD [Homo sapiens]
 gi|3024341|sp|Q09472|P300_HUMAN   E1A-associated protein p300
 gi|627657|pir||A54277   transcription adaptor protein p300 - human
 gi|495301|gb|AAA18639.1|   p300 protein
          Length = 2414

 Score = 83.7 bits (206), Expect = 4e-16
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 24/141 (17%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        R+ +V+K+++      P   P    +     L   A + E  ++ +A+N
Sbjct: 569 KQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESANN 625

Query: 60  QTEYLRQICMKMLNM----------ETKSQNAAGSS------SADDNTPPLVPEPSVPNN 103
           + EY   +  K+  +            + QN   ++      S +       P+P + +N
Sbjct: 626 RAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAGMVPVSMNPGPNMGQPQPGMTSN 685

Query: 104 EPAVNTGDWRTQQPQDSRQKN 124
            P  +    R   P     + 
Sbjct: 686 GPLPDPSMIRGSVPNQMMPRI 706



>gi|27666550|ref|XP_235770.1|   similar to E1A-associated protein p300 [Rattus norvegicus]
          Length = 1605

 Score = 83.0 bits (204), Expect = 8e-16
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 12/109 (11%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        R+ +V+K+++      P   P    +     L   A + E  ++ +A+N
Sbjct: 198 KQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESANN 254

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSAD-DN--TPPLVPEPSVPNNEP 105
           + EY   +  K+  ++ K       +     N         P   N  P
Sbjct: 255 RAEYYHLLAEKIYKIQ-KELEEKRRTRLQKQNMLPSAPGMVPVPMNTAP 302



>gi|4758056|ref|NP_004371.1|   CREB binding protein [Homo sapiens]
 gi|3023440|sp|Q92793|CBP_HUMAN   CREB-binding protein
 gi|2443859|gb|AAC51770.1|   CREB-binding protein
          Length = 2442

 Score = 81.8 bits (201), Expect = 2e-15
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 18/119 (15%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        RS +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 590 KGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 646

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSADDN---------TPPLVPEPSVPNNEPAVNT 109
           + EY   +  K+  ++ K       S                P    P +P  +P    
Sbjct: 647 RDEYYHLLAEKIYKIQ-KELEEKRRSRLHKQGILGNQPALPAPGAQPPVIPQAQPVRPP 704



>gi|4321116|gb|AAC51331.2|   CREB-binding protein [Homo sapiens]
          Length = 2442

 Score = 81.8 bits (201), Expect = 2e-15
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 18/119 (15%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        RS +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 590 KGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 646

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSADDN---------TPPLVPEPSVPNNEPAVNT 109
           + EY   +  K+  ++ K       S                P    P +P  +P    
Sbjct: 647 RDEYYHLLAEKIYKIQ-KELEEKRRSRLHKQGILGNQPALPAPGAQPPVIPQAQPVRPP 704



>gi|547239|gb|AAB31182.1|   p300=transcription coactivator {N-terminal} [mice, Peptide Partial,
           688 aa]
          Length = 688

 Score = 81.0 bits (199), Expect = 3e-15
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        R+ +V+K+++      P   P    +     L   A + E  ++ +A+N
Sbjct: 570 KQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESANN 626

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSAD-----DNTPPLVPEP-SVPNNEPAVNTG 110
           + EY   +  K+  ++ K       +         N P + P P +  +N     TG
Sbjct: 627 RAEYYHLLAEKIYKIQ-KELEEKRRTRLQKQNMLPNAPGMGPVPMNTGSNMGQQPTG 682



>gi|27663074|ref|XP_235502.1|   similar to E1A-associated protein p300 [Rattus norvegicus]
          Length = 2156

 Score = 81.0 bits (199), Expect = 3e-15
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 12/109 (11%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        R+ +V+K+++      P   P    +     L   A + E  ++ +A+N
Sbjct: 198 KQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESANN 254

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSAD-DN--TPPLVPEPSVPNNEP 105
           + EY   +  K+  ++ K       +     N         P   N  P
Sbjct: 255 RAEYYHLLAEKIYKIQ-KELEEKRRTRLQKQNMLPSAPGMVPVPMNTAP 302



>gi|631119|pir||S39162   transcription coactivator CREB-binding protein - human
          Length = 2440

 Score = 80.7 bits (198), Expect = 4e-15
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        RS +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 590 KGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 646

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSV-PNNEPAVNT 109
           + EY   +  K+  ++ K       S                P  +P V  
Sbjct: 647 RDEYYHLLAEKIYKIQ-KELEEKRRSRLHKQGILGNQPALPAPGAQPPVIP 696



>gi|28486616|ref|XP_283295.1|   similar to E1A-associated protein p300 [Mus musculus]
 gi|29244384|ref|NP_808489.1|   hypothetical protein A730011L11 [Mus musculus]
 gi|26335221|dbj|BAC31311.1|   unnamed protein product [Mus musculus]
          Length = 714

 Score = 79.5 bits (195), Expect = 8e-15
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        R+ +V+K+++      P   P    +     L   A + E  ++ +A+N
Sbjct: 570 KQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESANN 626

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSAD-----DNTPPLVPEP-SVPNNEPAVNTG 110
           + EY   +  K+  ++ K       +         N P + P P +  +N     TG
Sbjct: 627 RAEYYHLLAEKIYKIQ-KELEEKRRTRLQKQNMLPNAPGMGPVPMNTGSNMGQQPTG 682



>gi|737920|prf||1923401A   protein CBP
          Length = 2441

 Score = 79.1 bits (194), Expect = 1e-14
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 21/134 (15%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W  +     RS +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 589 KGWHERVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 645

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSADD-----NTPPLV----PEPSVP---NNEPAV 107
           + EY   +  K+  ++ K       +         N P L       P +P   +  P  
Sbjct: 646 RDEYYHLLAEKIYKIQ-KELEEKRRTRLHKQGILGNQPALPASGAQPPVIPPAQSVRPPN 704

Query: 108 NTGDWRTQQPQDSR 121
                   + Q S+
Sbjct: 705 GPLPLPVNRMQVSQ 718



>gi|2996629|gb|AAC08447.1|   CBP [Homo sapiens]
          Length = 555

 Score = 79.1 bits (194), Expect = 1e-14
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 18/119 (15%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        RS +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 324 KGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 380

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSADDN---------TPPLVPEPSVPNNEPAVNT 109
           + EY   +  K+  ++ K       S                P    P +P  +P    
Sbjct: 381 RDEYYHLLAEKIYKIQ-KELEEKRRSRLHKQGILGNQPALPAPGAQPPVIPQAQPVRPP 438



>gi|19547885|gb|AAL87531.1|   CREB-binding protein [Mus musculus]
 gi|19547887|gb|AAL87532.1|   CREB-binding protein [Mus musculus]
          Length = 2429

 Score = 78.7 bits (193), Expect = 1e-14
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 21/134 (15%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        RS +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 583 KGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 639

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSADD-----NTPPLV----PEPSVP---NNEPAV 107
           + EY   +  K+  ++ K       S         N P L       P +P   +  P  
Sbjct: 640 RDEYYHLLAEKIYKIQ-KELEEKRRSRLHKQGILGNQPALPASGAQPPVIPPAQSVRPPN 698

Query: 108 NTGDWRTQQPQDSR 121
                   + Q S+
Sbjct: 699 GPLPLPVNRMQVSQ 712



>gi|27881767|gb|AAH44677.1|   Similar to CREB binding protein (Rubinstein-Taybi syndrome)
           [Xenopus laevis]
          Length = 1047

 Score = 78.3 bits (192), Expect = 2e-14
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        R+ +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 579 KAWHEHVTQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMYESANS 635

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSAD-DNTPPLVPEPSVPNNEPAVNT 109
           + EY   +  K+  ++ K       S                P  +P   T
Sbjct: 636 RDEYYHFLAEKIYKIQ-KELEEKRRSRLQKQGIMSSQAPLQAPGAQPTALT 685



>gi|1345703|sp|P45481|CBP_MOUSE   CREB-binding protein
 gi|481698|pir||S39161   CREB-binding protein - mouse
 gi|435855|gb|AAB28651.1|   CREB-binding protein; CBP [Mus sp.]
          Length = 2441

 Score = 77.2 bits (189), Expect = 4e-14
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 21/134 (15%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
             W        RS +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 589 KGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 645

Query: 60  QTEYLRQICMKMLNMETKSQNAAGSSSADD-----NTPPLV----PEPSVP---NNEPAV 107
           + EY   +  K+  ++ K       +         N P L       P +P   +  P  
Sbjct: 646 RDEYYHLLAEKIYKIQ-KELEEKRRTRLHKQGILGNQPALPASGAQPPVIPPAQSVRPPN 704

Query: 108 NTGDWRTQQPQDSR 121
                   + Q S+
Sbjct: 705 GPLPLPVNRMQVSQ 718



>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score = 75.3 bits (184), Expect = 2e-13
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQT 61
          DWR+Q     R ++++KI+E   ++         N+   IA +FEE  ++ A+++T
Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDKT 76



>gi|4139873|pdb|1KDX|A   Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protein) In
          Complex With Phosphorylated Kinase Inducible Domain
          (Pkid) Of Rat Creb (Cyclic Amp Response Element Binding
          Protein), Nmr 17 Structures
          Length = 81

 Score = 74.5 bits (182), Expect = 3e-13
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASN 59
            W        RS +V+K+++      P   P    +     L   A + E  ++ +A++
Sbjct: 4  KGWHEHVTQDLRSHLVHKLVQAI---FPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 60

Query: 60 QTEYLRQICMKMLNME 75
          + EY   +  K+  ++
Sbjct: 61 RDEYYHLLAEKIYKIQ 76



>gi|27260985|dbj|BAC45102.1|   OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)]
          Length = 87

 Score = 56.4 bits (135), Expect = 8e-08
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 24 METQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60
          M     +L         +L+K+A R EE+++  A + 
Sbjct: 39 MPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75



>gi|17508323|ref|NP_493339.1|   KIX domain containing protein family member (80.3 kD)
           [Caenorhabditis elegans]
 gi|7505888|pir||T23651   hypothetical protein M01E5.6 - Caenorhabditis elegans
 gi|3878635|emb|CAB07643.1|   Hypothetical protein M01E5.6 [Caenorhabditis elegans]
 gi|3879438|emb|CAB03290.1|   Hypothetical protein M01E5.6 [Caenorhabditis elegans]
          Length = 702

 Score = 42.5 bits (99), Expect = 0.001
 Identities = 15/97 (15%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 2   DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTN-----ELRKIAVRFEEKLFNN 56
           +T+ +W        R+ +V K+++    ++     E  N     +L   A + E ++   
Sbjct: 597 NTSKEW---IVEDIRNHMVGKLLKAFWPRIQ--NVEEMNGELFKKLIANARKCETEILEA 651

Query: 57  ASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPP 93
           ++++ EY R + + +  +  K+      ++  ++  P
Sbjct: 652 SNDRDEYYRLMQLTVDQILKKTLKKDQRATEHNHQQP 688



>gi|23127315|ref|ZP_00109188.1|   hypothetical protein [Nostoc punctiforme]
          Length = 469

 Score = 41.4 bits (96), Expect = 0.003
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 34  IRPEGTNELRK-IAVRFEEKLFNNASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTP 92
                   + + I +   +++F  A +Q+E LR    +   +           +A +   
Sbjct: 176 TWQYTLKAITRTIVLSLPQEVFERAIDQSEALRTHVEQ-FRVRLSQPQTPQGEAAIELAA 234

Query: 93  PLVPEPSVPNN 103
               E  +P  
Sbjct: 235 NHPQEAELPGT 245



>gi|24375159|ref|NP_719202.1|   sigma-54 dependent transcriptional regulator/sensory box protein
           [Shewanella oneidensis MR-1]
 gi|24349936|gb|AAN56646.1|AE015801_4   sigma-54 dependent transcriptional regulator/sensory box protein
           [Shewanella oneidensis MR-1]
          Length = 488

 Score = 39.8 bits (92), Expect = 0.007
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 9   TQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQIC 68
                    +I     +   K + +  P    EL+ I  R          +QT+ L    
Sbjct: 364 HTLNRKLGKKIRGVSQKGLKKLMTYSWPGNVRELQNILER------EAILSQTDILHIHA 417

Query: 69  MKMLNMETKSQNAAGSSSADDNTPPL 94
           M   +++T++  A+   +  +     
Sbjct: 418 MPTHHLQTQTA-ASPLQTLAEAEAQH 442



>gi|19074594|ref|NP_586100.1|   MADS domain [Encephalitozoon cuniculi]
 gi|19069236|emb|CAD25704.1|   MADS domain [Encephalitozoon cuniculi]
          Length = 776

 Score = 38.7 bits (89), Expect = 0.016
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 10 QFPSASRSRIVNKIMETQLK--QLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQI 67
                R +++ K+     +    P   P    E    A+R E++++  + ++ EYLR +
Sbjct: 1  MLSQEERKQMILKLFVALKESNIFPGYTPVQIKE---AAIRAEQRIYEESGSKEEYLRGM 57

Query: 68 CMKMLNME 75
            +   +E
Sbjct: 58 DERFQRIE 65



>gi|27260988|dbj|BAC45105.1|   OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)]
          Length = 194

 Score = 37.9 bits (87), Expect = 0.025
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 1  MDTTGDWRTQFPSASRSRIVNKIMET 26
          +D   DWRT+     R R+ + I++ 
Sbjct: 7  IDEGVDWRTRLGQDIRDRVTHDILQA 32



>gi|7487910|pir||T01055   hypothetical protein YUP8H12R.38 - Arabidopsis thaliana
 gi|3152587|gb|AAC17068.1|   Similar to CREB-binding protein homolog gb|U88570 from D.
           melanogaster and contains similarity to
           callus-associated protein gb|U01961 from Nicotiana
           tabacum.  EST gb|W43427 comes from this gene.
           [Arabidopsis thaliana]
          Length = 1516

 Score = 37.9 bits (87), Expect = 0.026
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 15  SRSRIVNKIMETQLKQLPFIRPEGTN-ELRKIAVRFEEKLFNNASNQTEYLR--QICMKM 71
            R  +  +I     ++ P    E +  +   +A R EE LF  A+ + +Y+    +  ++
Sbjct: 51  LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDYVNPSTLEPRL 110

Query: 72  LNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNT 109
            ++    Q    +    +++      P+        N 
Sbjct: 111 ASLIKGRQLNNYNQRHANSSSVGTMIPTPGLQHSGGNP 148



>gi|17549180|ref|NP_522520.1|   PROBABLE SIGMA-54 INTERACTING TRANSCRIPTION REGULATOR PROTEIN
           [Ralstonia solanacearum]
 gi|17431432|emb|CAD18110.1|   PROBABLE SIGMA-54 INTERACTING TRANSCRIPTION REGULATOR PROTEIN
           [Ralstonia solanacearum]
          Length = 510

 Score = 37.9 bits (87), Expect = 0.028
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 33  FIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTP 92
           +  P    EL  +  R   K+ +  +++ +        ++ +ET   +    + A  +  
Sbjct: 396 YPWPGNVRELEHVVSRAALKMLSRGASRDD--------IVTLETGLLDLDAQAVAPPSPA 447

Query: 93  PLVPEPSV 100
            L PE S 
Sbjct: 448 GLPPEASP 455



>gi|18412221|ref|NP_565197.1|   p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
 gi|12597461|gb|AAG60059.1|   p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
          Length = 1654

 Score = 37.5 bits (86), Expect = 0.034
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 15  SRSRIVNKIMETQLKQLPFIRPEGTN-ELRKIAVRFEEKLFNNASNQTEYLR--QICMKM 71
            R  +  +I     ++ P    E +  +   +A R EE LF  A+ + +Y+    +  ++
Sbjct: 51  LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDYVNPSTLEPRL 110

Query: 72  LNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNT 109
            ++    Q    +    +++      P+        N 
Sbjct: 111 ASLIKGRQLNNYNQRHANSSSVGTMIPTPGLQHSGGNP 148



>gi|17567279|ref|NP_509376.1|   KIX domain containing protein family member [Caenorhabditis
           elegans]
 gi|7499689|pir||T16139   hypothetical protein F22F1.3 - Caenorhabditis elegans
 gi|1118044|gb|AAA83283.1|   Hypothetical protein F22F1.3 [Caenorhabditis elegans]
          Length = 295

 Score = 37.5 bits (86), Expect = 0.038
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 15  SRSRIVNKIMETQLKQLPFIRPEG-----TNELRKIAVRFEEKLFNNASNQTEYLRQICM 69
            R  ++ KI+    + +P    +        EL++ A   E+K F     + EY  ++  
Sbjct: 70  LRQYMITKIV---REAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELAR 126

Query: 70  KMLNMETKSQNAAGSSSADDNTPPLVP 96
            +L+M+   Q+    S  D  +     
Sbjct: 127 IILSMQKHLQSRPKGSYEDPYSNIPPS 153



>gi|17559186|ref|NP_507512.1|   Predicted CDS, putative cytoplasmic protein, nematode specific
           [Caenorhabditis elegans]
 gi|7498278|pir||T20398   hypothetical protein E01B7.2 - Caenorhabditis elegans
 gi|5824421|emb|CAB54214.1|   Hypothetical protein E01B7.2 [Caenorhabditis elegans]
          Length = 230

 Score = 37.5 bits (86), Expect = 0.038
 Identities = 16/70 (22%), Positives = 27/70 (38%)

Query: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
           DW+       R + V KI+ T         P   +EL   +   E   ++ A N+  Y  
Sbjct: 56  DWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRYLYDG 115

Query: 66  QICMKMLNME 75
            I   + +M+
Sbjct: 116 GIESMIQSMQ 125



>gi|25396635|pir||E89403   protein C06H5.4 [imported] - Caenorhabditis elegans
          Length = 337

 Score = 37.1 bits (85), Expect = 0.049
 Identities = 16/70 (22%), Positives = 27/70 (38%)

Query: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
           DW+       R + V KI+ T         P   +EL   +   E   ++ A N+  Y  
Sbjct: 177 DWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRYLYDG 236

Query: 66  QICMKMLNME 75
            I   + +M+
Sbjct: 237 GIESMIQSMQ 246



>gi|15219327|ref|NP_173115.1|   expressed protein [Arabidopsis thaliana]
          Length = 1706

 Score = 36.4 bits (83), Expect = 0.082
 Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 45  IAVRFEEKLFNNASNQTEYLRQICM--KMLNMETKSQNAAGSSSADDNTPPLVPEPSVPN 102
           +A R EE LF  A  + +Y+ +  +  ++ ++    Q    +    +++      P+   
Sbjct: 104 VARRLEEGLFKMAVTKEDYMNRSTLESRITSLIKGRQINNYNQRHANSSSVGTMIPTPGL 163

Query: 103 NEPAVNT 109
           ++ A N 
Sbjct: 164 SQTAGNP 170



>gi|22999605|ref|ZP_00043576.1|   hypothetical protein [Magnetococcus sp. MC-1]
          Length = 682

 Score = 36.4 bits (83), Expect = 0.085
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSRQK 123
           ++ I  + L    ++ NA   +    N         V  N+P+ N  D R  Q    R +
Sbjct: 272 IQYIAYRALLKSVRNTNAKAGTVVVMNPNNGEILALV--NQPSYNPNDLRHSQDHQRRNR 329

Query: 124 NINALLDT 131
              A++DT
Sbjct: 330 ---AIMDT 334



>gi|25148761|ref|NP_741151.1|   Putative nuclear protein, nematode specific [Caenorhabditis
           elegans]
 gi|21450526|gb|AAM54164.1|U00066_6   Hypothetical protein R12B2.5b [Caenorhabditis elegans]
          Length = 777

 Score = 33.7 bits (76), Expect = 0.50
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLK------QLPFIRPEGTNELRKIAVRFEEKLFNNA 57
             DW +      R  ++ ++     +       LP             A + EE +F   
Sbjct: 3   EEDWPS---PKFREHVIQRLEPELARNRQNAPNLPVPGD---------ARQVEEYVFAKC 50

Query: 58  SNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQP 117
            ++ EY+R I   +  +   S++AA  S    +     P  +  N       G +R   P
Sbjct: 51  MSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAGNTPAGGTPG-YRAPVP 109

Query: 118 QDSR 121
            D +
Sbjct: 110 PDPQ 113



>gi|17552402|ref|NP_497144.1|   TAZ zinc finger family member [Caenorhabditis elegans]
 gi|7496697|pir||T33579   hypothetical protein C29F9.6 - Caenorhabditis elegans
 gi|3790688|gb|AAC68748.1|   Hypothetical protein C29F9.6 [Caenorhabditis elegans]
          Length = 228

 Score = 33.7 bits (76), Expect = 0.54
 Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 3   TTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTE 62
           T+  W ++ P   R  ++ +I +  +       P    ++++ A   E ++F  A ++ E
Sbjct: 116 TSQPWHSEVPKTDREAVIERISKHIMLHPQRFEP--IWKIKEDARAAELQIFEAAGSRDE 173

Query: 63  YLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPS 99
           Y R +  +    + K+    G  +  +       +P 
Sbjct: 174 YYRMVEERAPREQDKAPEGPGQEAQKEEKGAGEEDPD 210






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jun 26, 2003  1:47 AM
  Number of letters in database: 468,778,868
  Number of sequences in database:  1,459,938
  
Lambda     K      H
   0.317    0.160    0.420 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,452,241
Number of Sequences: 1459938
Number of extensions: 5840734
Number of successful extensions: 35374
Number of sequences better than  1.0: 90
Number of HSP's better than  1.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 35122
Number of HSP's gapped (non-prelim): 214
length of query: 145
length of database: 468,778,868
effective HSP length: 121
effective length of query: 24
effective length of database: 292,126,370
effective search space: 7011032880
effective search space used: 7011032880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)