BLASTP 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1056973237-028385-26959

Query= At1g15790 [1-145]
         (145 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,459,938 sequences; 468,778,868 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs



Results of PSI-Blast iteration 3

Skip to the first new sequence

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|22329593|ref|NP_173031.2|  expressed protein [Arabidopsis thal...   235   1e-61 

 gi|15218294|ref|NP_173030.1|  expressed protein [Arabidopsis thal...   182   9e-46 

 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]    175   1e-43 

 gi|25511635|pir||B86292  F7H2.12 protein - Arabidopsis thaliana >...   167   3e-41 

 gi|24461860|gb|AAN62347.1|AF506028_14  CTV.20 [Poncirus trifoliata]    158   2e-38 

 gi|28071313|dbj|BAC56002.1|  P0705A05.20 [Oryza sativa (japonica ...   151   1e-36 

 gi|27260984|dbj|BAC45101.1|  OJ1705_C03.23 [Oryza sativa (japonic...   107   3e-23 

 gi|7493813|pir||T18235  transcription activator GAL11 homolog - y...   105   1e-22 

 gi|15226772|ref|NP_178842.1|  hypothetical protein [Arabidopsis t...    79   1e-14 

 gi|27260985|dbj|BAC45102.1|  OJ1705_C03.24 [Oryza sativa (japonic...    55   3e-07 

 gi|21243753|ref|NP_643335.1|  transcriptional regulator [Xanthomo...    43   6e-04 

 gi|2133462|pir||S60123  hypothetical protein R10E11.1 - Caenorhab...    42   0.002 

 gi|7511830|pir||T13828  CREB-binding protein homolog - fruit fly ...    42   0.002 

 gi|17552708|ref|NP_499161.1|  CBP/p300 homolog CBP-1 (cbp-1) [Cae...    42   0.002 

 gi|17552710|ref|NP_499160.1|  CBP/p300 homolog CBP-1 (cbp-1) [Cae...    42   0.002 

 gi|24640865|ref|NP_524642.2|  nejire CG15319-PB [Drosophila melan...    41   0.002 


Sequences with E-value WORSE than threshold


 gi|31753089|gb|AAH53889.1|  Unknown (protein for IMAGE:6151364) [...    40   0.006 

 gi|4557557|ref|NP_001420.1|  E1A binding protein p300; E1A-bindin...    40   0.009 

 gi|482238|pir||S41033  hypothetical protein K03H1.10 - Caenorhabd...    39   0.015 

 gi|17554044|ref|NP_499201.1|  TAZ zinc finger and KIX domain cont...    39   0.017 

 gi|19074594|ref|NP_586100.1|  MADS domain [Encephalitozoon cunicu...    39   0.017 

 gi|22999605|ref|ZP_00043576.1|  hypothetical protein [Magnetococc...    38   0.021 

 gi|21307831|gb|AAL54859.1|  CREB-binding protein [Aplysia califor...    37   0.051 

 gi|9629599|ref|NP_044842.1|  unknown [murid herpesvirus 4] >gi|18...    37   0.055 

 gi|27260988|dbj|BAC45105.1|  OJ1705_C03.27 [Oryza sativa (japonic...    36   0.12  

 gi|15610187|ref|NP_217566.1|  hypothetical protein Rv3050c [Mycob...    35   0.15  

 gi|6323948|ref|NP_014019.1|  Hypothetical ORF; Ymr291wp [Saccharo...    35   0.16  

 gi|15219327|ref|NP_173115.1|  expressed protein [Arabidopsis thal...    35   0.26  

 gi|28279616|gb|AAH45472.1|  Similar to PC2 (positive cofactor 2, ...    34   0.35  

 gi|7487910|pir||T01055  hypothetical protein YUP8H12R.38 - Arabid...    34   0.46  

 gi|18412221|ref|NP_565197.1|  p300/CBP acetyltransferase-related ...    34   0.56  


Alignments








>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
           [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score =  235 bits (599), Expect = 1e-61
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60
           MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ
Sbjct: 1   MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60

Query: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS 120
           TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS
Sbjct: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS 120

Query: 121 RQKNINALLDTLKKIVPHSGKEGID 145
           RQKNINALLDTLKKIVPHSGKEGID
Sbjct: 121 RQKNINALLDTLKKIVPHSGKEGID 145




 Score = 89.6 bits (221), Expect = 8e-18
 Identities = 34/71 (47%), Positives = 47/71 (66%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           TGDWRTQ P  SR + +N +++T  K +P    EG +EL +IAV  EE +FN+A NQ +Y
Sbjct: 109 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 168

Query: 64  LRQICMKMLNM 74
           L +I +KM  M
Sbjct: 169 LGKISLKMRTM 179



>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  182 bits (462), Expect = 9e-46
 Identities = 69/115 (60%), Positives = 79/115 (68%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQT+Y
Sbjct: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDY 78

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQ 118
           LR+I MKML METKSQNAAGSS+A           S+P N+  +  G   T Q Q
Sbjct: 79  LRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPTNQGQLLPGSLSTNQSQ 133




 Score = 83.0 bits (204), Expect = 7e-16
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+
Sbjct: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN 55



>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  175 bits (443), Expect = 1e-43
 Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 6/125 (4%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           TGDWRTQ    SR RIVNKIM+T  + LPF   +G NEL+KIA RFEEK++  AS+Q++Y
Sbjct: 34  TGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDY 93

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPN------NEPAVNTGDWRTQQP 117
           LR+I +KML+ME+KSQNA  +S   +N       P   +      N+           Q 
Sbjct: 94  LRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPGSMQNQVHNQGQSLPIPLSANQS 153

Query: 118 QDSRQ 122
           Q  +Q
Sbjct: 154 QVRQQ 158




 Score = 78.0 bits (191), Expect = 3e-14
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           P+ P  E  ++TGDWRTQ   DSRQ+ +N ++DTLK+ +P SG++G++
Sbjct: 23  PTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLN 70



>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  167 bits (422), Expect = 3e-41
 Identities = 69/146 (47%), Positives = 79/146 (54%), Gaps = 31/146 (21%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ--- 60
           TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQ   
Sbjct: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQRFV 78

Query: 61  ----------------------------TEYLRQICMKMLNMETKSQNAAGSSSADDNTP 92
                                       T+YLR+I MKML METKSQNAAGSS+A     
Sbjct: 79  RQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTMETKSQNAAGSSAAIPAAN 138

Query: 93  PLVPEPSVPNNEPAVNTGDWRTQQPQ 118
                 S+P N+  +  G   T Q Q
Sbjct: 139 NGTSIDSIPTNQGQLLPGSLSTNQSQ 164




 Score = 83.4 bits (205), Expect = 5e-16
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+
Sbjct: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN 55



>gi|24461860|gb|AAN62347.1|AF506028_14   CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score =  158 bits (399), Expect = 2e-38
 Identities = 52/105 (49%), Positives = 71/105 (67%), Gaps = 7/105 (6%)

Query: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
           DWR      SR RIVNKIM+T  + LPF  PEG NEL++IA RFEEK+F +A++Q++YLR
Sbjct: 16  DWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYLR 75

Query: 66  QICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTG 110
           +I +KML+ME++SQNA+GS     N PP       P  +  ++T 
Sbjct: 76  KISLKMLSMESRSQNASGS-----NEPPHPGIK--PLTKEGLDTS 113




 Score = 81.9 bits (201), Expect = 2e-15
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 107 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           ++  DWR     DSRQ+ +N ++DTLK+ +P SG EG++
Sbjct: 12  LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLN 50



>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  151 bits (383), Expect = 1e-36
 Identities = 51/93 (54%), Positives = 68/93 (73%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64
           GDWR+Q  S +R+RIVNKIM+T  K LP   PEG NEL+KIAVRFEEK++  A++Q++YL
Sbjct: 35  GDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYL 94

Query: 65  RQICMKMLNMETKSQNAAGSSSADDNTPPLVPE 97
           R+I +KML+METK+Q   G++    N  P   E
Sbjct: 95  RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSE 127




 Score = 75.7 bits (185), Expect = 1e-13
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 85  SSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGI 144
           +   D       +P+ P   PA+  GDWR+Q   ++R + +N ++DTLKK +P S  EG+
Sbjct: 12  TQGADPAASGGIDPNAPA--PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGL 69

Query: 145 D 145
           +
Sbjct: 70  N 70



>gi|27260984|dbj|BAC45101.1|   OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score =  107 bits (268), Expect = 3e-23
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
          DWRT+     R R+   I+ +   +L         +L+K+A R EE+++  A +  +YLR
Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71

Query: 66 QICM 69
          +I +
Sbjct: 72 RISL 75



>gi|7493813|pir||T18235   transcription activator GAL11 homolog - yeast (Candida albicans)
 gi|3859719|emb|CAA21993.1|   possible regulatory protein [Candida albicans]
          Length = 1145

 Score =  105 bits (262), Expect = 1e-22
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 7   WRTQFPSASRSRIVNKIMETQLKQLPFIRPE-GTNELRKIAVRFEEKLFNNASNQTEYLR 65
           WR  +    R ++V  I+ T   +L    P      L K+A  FE+ ++  ++++ +YLR
Sbjct: 23  WRAMYSGEERQKVVQIIINTLT-ELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLR 81

Query: 66  QICMKMLNMETKSQNAAGSSSADDNT 91
            I MK+  +  + Q  A +     N 
Sbjct: 82  AIKMKVHQLRVQKQQIAANQGGQINP 107



>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score = 78.8 bits (193), Expect = 1e-14
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQT 61
          DWR+Q     R ++++KI+E   ++         N+   IA +FEE  ++ A+++T
Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDKT 76



>gi|27260985|dbj|BAC45102.1|   OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)]
          Length = 87

 Score = 54.5 bits (130), Expect = 3e-07
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 24 METQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60
          M     +L         +L+K+A R EE+++  A + 
Sbjct: 39 MPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75



>gi|21243753|ref|NP_643335.1|   transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109340|gb|AAM37871.1|   transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 534

 Score = 43.4 bits (101), Expect = 6e-04
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 11/131 (8%)

Query: 10  QFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLRQICM 69
           +        +   +M+       +  PE   EL ++ +R             + +++   
Sbjct: 319 RHGLDHGQVVTEVLMDALT---HYSWPENLQELERVVLRLAVMTAGRPIGSAD-IQRHAP 374

Query: 70  KMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSRQKNINALL 129
           ++L    K       ++       L  EP+ P         DW    P    Q+    L 
Sbjct: 375 RLLEGRVKGAQHDACATMSQ-PADLPAEPTPPGT-----PVDWIDGLPHRPGQRLAT-LH 427

Query: 130 DTLKKIVPHSG 140
           D L++ + H G
Sbjct: 428 DALRRALVHLG 438



>gi|2133462|pir||S60123   hypothetical protein R10E11.1 - Caenorhabditis elegans
          Length = 2027

 Score = 42.2 bits (98), Expect = 0.002
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 2   DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTN-----ELRKIAVRFEEKLFNN 56
           D T +W  Q     R+ +V K++       P    E  N     +L   A + E+++F +
Sbjct: 593 DCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFES 649

Query: 57  ASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNE 104
           A+++ EY   +  K+  ++ K      +S  +            P+NE
Sbjct: 650 ANDREEYYHLLAEKIYKIQ-KELQEKKNSRLNQGAAAHDQYAIPPSNE 696



>gi|7511830|pir||T13828   CREB-binding protein homolog - fruit fly (Drosophila melanogaster)
 gi|1916930|gb|AAB53050.1|   CREB-binding protein homolog [Drosophila melanogaster]
          Length = 3190

 Score = 41.8 bits (97), Expect = 0.002
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 2    DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNN 56
            D   DWR    +  R+ +V+K+++      P   P    +     L   A + E+ ++  
Sbjct: 938  DNEKDWRESVTADLRNHLVHKLVQAI---FPTSDPTTMQDKRMHNLVSYAEKVEKDMYEM 994

Query: 57   ASNQTEYLRQICMKMLNME 75
            A +++EY   +  K+  ++
Sbjct: 995  AKSRSEYYHLLAEKIYKIQ 1013



>gi|17552708|ref|NP_499161.1|   CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans]
 gi|14530537|emb|CAA82353.2|   C. elegans CBP-1 protein (corresponding sequence R10E11.1a)
           [Caenorhabditis elegans]
          Length = 2045

 Score = 41.8 bits (97), Expect = 0.002
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 2   DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTN-----ELRKIAVRFEEKLFNN 56
           D T +W  Q     R+ +V K++       P    E  N     +L   A + E+++F +
Sbjct: 582 DCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFES 638

Query: 57  ASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNE 104
           A+++ EY   +  K+  ++ K      +S  +            P+NE
Sbjct: 639 ANDREEYYHLLAEKIYKIQ-KELQEKKNSRLNQGAAAHDQYAIPPSNE 685



>gi|17552710|ref|NP_499160.1|   CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans]
 gi|20455476|sp|P34545|CBP1_CAEEL   Protein cbp-1
 gi|25299632|pir||G88564   protein R10E11.1 [imported] - Caenorhabditis elegans
 gi|17645979|emb|CAD18875.1|   C. elegans CBP-1 protein (corresponding sequence R10E11.1b)
           [Caenorhabditis elegans]
          Length = 2056

 Score = 41.8 bits (97), Expect = 0.002
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 2   DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTN-----ELRKIAVRFEEKLFNN 56
           D T +W  Q     R+ +V K++       P    E  N     +L   A + E+++F +
Sbjct: 593 DCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFES 649

Query: 57  ASNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNE 104
           A+++ EY   +  K+  ++ K      +S  +            P+NE
Sbjct: 650 ANDREEYYHLLAEKIYKIQ-KELQEKKNSRLNQGAAAHDQYAIPPSNE 696



>gi|24640865|ref|NP_524642.2|   nejire CG15319-PB [Drosophila melanogaster]
 gi|22833041|gb|AAF46516.2|   CG15319-PB [Drosophila melanogaster]
          Length = 3276

 Score = 41.4 bits (96), Expect = 0.002
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 2    DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNN 56
            D   DWR    +  R+ +V+K+++      P   P    +     L   A + E+ ++  
Sbjct: 938  DNEKDWRESVTADLRNHLVHKLVQAI---FPTSDPTTMQDKRMHNLVSYAEKVEKDMYEM 994

Query: 57   ASNQTEYLRQICMKMLNME 75
            A +++EY   +  K+  ++
Sbjct: 995  AKSRSEYYHLLAEKIYKIQ 1013



>gi|31753089|gb|AAH53889.1|   Unknown (protein for IMAGE:6151364) [Homo sapiens]
          Length = 1553

 Score = 39.9 bits (92), Expect = 0.006
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 34/160 (21%)

Query: 3   TTG---DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLF 54
           TTG    W        R+ +V+K+++      P   P    +     L   A + E  ++
Sbjct: 564 TTGIRKQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMY 620

Query: 55  NNASNQTEYLRQICMKMLNM----------ETKSQNAAGSSS----ADDNTPPLVPEPSV 100
            +A+N+ EY   +  K+  +            + QN   +++       N  P + +P  
Sbjct: 621 ESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAGMVPVSMNPGPNMGQPQP 680

Query: 101 PNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSG 140
                           P   R    N ++    +I P SG
Sbjct: 681 GMTSNGPLP------DPSMIRGSVPNQMM---PRITPQSG 711



>gi|4557557|ref|NP_001420.1|   E1A binding protein p300; E1A-binding protein, 300kD [Homo sapiens]
 gi|3024341|sp|Q09472|P300_HUMAN   E1A-associated protein p300
 gi|627657|pir||A54277   transcription adaptor protein p300 - human
 gi|495301|gb|AAA18639.1|   p300 protein
          Length = 2414

 Score = 39.5 bits (91), Expect = 0.009
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 34/160 (21%)

Query: 3   TTG---DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLF 54
           TTG    W        R+ +V+K+++      P   P    +     L   A + E  ++
Sbjct: 564 TTGIRKQWHEDITQDLRNHLVHKLVQAI---FPTPDPAALKDRRMENLVAYARKVEGDMY 620

Query: 55  NNASNQTEYLRQICMKMLNM----------ETKSQNAAGSSS----ADDNTPPLVPEPSV 100
            +A+N+ EY   +  K+  +            + QN   +++       N  P + +P  
Sbjct: 621 ESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAGMVPVSMNPGPNMGQPQP 680

Query: 101 PNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSG 140
                           P   R    N ++    +I P SG
Sbjct: 681 GMTSNGPLP------DPSMIRGSVPNQMM---PRITPQSG 711



>gi|482238|pir||S41033   hypothetical protein K03H1.10 - Caenorhabditis elegans  (fragment)
          Length = 316

 Score = 38.7 bits (89), Expect = 0.015
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           T +W  Q  +  R+ IV K+++        +      +L   A + E+++F  A ++  Y
Sbjct: 160 TKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDRKNY 219

Query: 64  LRQICMKMLNMETKSQNAAGSSS-ADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQD--S 120
              +  K+  ++ + Q    S         PL     +  +E        RT Q  +   
Sbjct: 220 YHLLAEKIYEIQKELQEKKNSRLNQGAAQSPLDEFARMRIDEGG---HQLRTNQETETNR 276

Query: 121 RQKNINALLD 130
           + ++   L+D
Sbjct: 277 QNQSQQPLMD 286



>gi|17554044|ref|NP_499201.1|   TAZ zinc finger and KIX domain containing protein family member
           (36.7 kD) [Caenorhabditis elegans]
 gi|25395947|pir||D88569   protein K03H1.10 [imported] - Caenorhabditis elegans
 gi|3877003|emb|CAA82940.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
 gi|3878179|emb|CAA82665.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
          Length = 322

 Score = 38.7 bits (89), Expect = 0.017
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           T +W  Q  +  R+ IV K+++        +      +L   A + E+++F  A ++  Y
Sbjct: 166 TKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDRKNY 225

Query: 64  LRQICMKMLNMETKSQNAAGSSS-ADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQD--S 120
              +  K+  ++ + Q    S         PL     +  +E        RT Q  +   
Sbjct: 226 YHLLAEKIYEIQKELQEKKNSRLNQGAAQSPLDEFARMRIDEGG---HQLRTNQETETNR 282

Query: 121 RQKNINALLD 130
           + ++   L+D
Sbjct: 283 QNQSQQPLMD 292



>gi|19074594|ref|NP_586100.1|   MADS domain [Encephalitozoon cuniculi]
 gi|19069236|emb|CAD25704.1|   MADS domain [Encephalitozoon cuniculi]
          Length = 776

 Score = 38.7 bits (89), Expect = 0.017
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 10 QFPSASRSRIVNKIMETQLKQ--LPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
                R +++ K+     +    P   P    E    A+R E++++  + ++ EYLR
Sbjct: 1  MLSQEERKQMILKLFVALKESNIFPGYTPVQIKEA---AIRAEQRIYEESGSKEEYLR 55



>gi|22999605|ref|ZP_00043576.1|   hypothetical protein [Magnetococcus sp. MC-1]
          Length = 682

 Score = 38.4 bits (88), Expect = 0.021
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 67  ICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSRQKNIN 126
           I  + L    ++ NA   +    N      E     N+P+ N  D R  Q    R +   
Sbjct: 275 IAYRALLKSVRNTNAKAGTVVVMNPN--NGEILALVNQPSYNPNDLRHSQDHQRRNR--- 329

Query: 127 ALLDT 131
           A++DT
Sbjct: 330 AIMDT 334



>gi|21307831|gb|AAL54859.1|   CREB-binding protein [Aplysia californica]
          Length = 2245

 Score = 36.8 bits (84), Expect = 0.051
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNE-----LRKIAVRFEEKLFNNASNQ 60
           DW  Q     R+ +V+K+++      P        +     L   A + E  ++ +A+N+
Sbjct: 504 DWHAQVTQDLRNHLVHKLVQAI---FPTPDQATLRDSRMKNLVAYARKVEGDMYESANNR 560

Query: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNT 109
            +Y   +  K+  ++ + +          N P       VP  +  ++ 
Sbjct: 561 GQYYHLLAEKIYKIQKELEEKRIQRMKVQNAPNA----QVPGMQGQIHP 605



>gi|9629599|ref|NP_044842.1|   unknown [murid herpesvirus 4]
 gi|1888433|emb|CAA72393.1|   ORF2 [Murid herpesvirus 4]
 gi|2317969|gb|AAB66427.1|   unknown [murid herpesvirus 4]
 gi|6625569|gb|AAF19270.1|AF105037_2   M2 [murid herpesvirus 4]
          Length = 199

 Score = 36.8 bits (84), Expect = 0.055
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 16/104 (15%)

Query: 8   RTQFPSASRSRIVNKIMETQL-----KQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTE 62
           RT+FP   R R  NK+  T       +  P   PE  N     A   EE ++  A+++  
Sbjct: 81  RTRFPKTIR-RGFNKLRSTLKSPWKPRPSPVPSPEEVNP----AGSPEENIYETANSEPV 135

Query: 63  YLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPE-PSVPNNEP 105
           Y++ I  + L M       +GS+ + +N  P     P +PN  P
Sbjct: 136 YIQPISTRSLMMLD-----SGSTDSPENLGPPTRPLPKLPNQHP 174



>gi|27260988|dbj|BAC45105.1|   OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)]
          Length = 194

 Score = 35.7 bits (81), Expect = 0.12
 Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 7/31 (22%)

Query: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRP 36
          DWRT+     R R+ + I       L    P
Sbjct: 12 DWRTRLGQDIRDRVTHDI-------LQASTP 35



>gi|15610187|ref|NP_217566.1|   hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv]
 gi|15842616|ref|NP_337653.1|   transcriptional regulator, TetR family [Mycobacterium
          tuberculosis CDC1551]
 gi|31794228|ref|NP_856721.1|   PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
          ASNC-FAMILY) [Mycobacterium bovis subsp. bovis
          AF2122/97]
 gi|7477469|pir||E70861   hypothetical protein Rv3050c - Mycobacterium tuberculosis
          (strain H37RV)
 gi|2791648|emb|CAA16135.1|   hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv]
 gi|13882931|gb|AAK47467.1|   transcriptional regulator, TetR family [Mycobacterium
          tuberculosis CDC1551]
 gi|31619823|emb|CAD96763.1|   PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
          ASNC-FAMILY) [Mycobacterium bovis subsp. bovis
          AF2122/97]
          Length = 246

 Score = 35.3 bits (80), Expect = 0.15
 Identities = 13/70 (18%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRPE-GTNELRKIAVRFEEKLFNNASNQTEYL 64
          D R++     R ++ N+I++   + +  + PE    ++ + A   + K++ + +++++ L
Sbjct: 18 DARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYRHFTDKSDLL 77

Query: 65 RQICMKMLNM 74
            I M++ +M
Sbjct: 78 EAIGMRLRDM 87



>gi|6323948|ref|NP_014019.1|   Hypothetical ORF; Ymr291wp [Saccharomyces cerevisiae]
 gi|2499620|sp|Q03533|KM8S_YEAST   Probable serine/threonine-protein kinase YMR291W
 gi|626854|pir||S47452   probable serine/threonine-specific protein kinase (EC 2.7.1.-)
           YMR291w - yeast (Saccharomyces cerevisiae)
 gi|530348|emb|CAA56800.1|   serine/threonine kinase [Saccharomyces cerevisiae]
          Length = 586

 Score = 35.3 bits (80), Expect = 0.16
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 64  LRQIC--MKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSR 121
           +R++     M  + + S++   ++ A  N      E S   +       D    +  +SR
Sbjct: 375 IRRVSSTASMHTLRSPSKSRKTTTLAYLNMDGGSSETSTAFSSKMDLP-DLYVDRTINSR 433

Query: 122 QKNINALLDTLKKIV 136
           ++++N + DTLKK +
Sbjct: 434 ERSLNRIRDTLKKTL 448



>gi|15219327|ref|NP_173115.1|   expressed protein [Arabidopsis thaliana]
          Length = 1706

 Score = 34.5 bits (78), Expect = 0.26
 Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 45  IAVRFEEKLFNNASNQTEYLRQICM--KMLNMETKSQNAAGSSSADDNTPPLVPEPSVPN 102
           +A R EE LF  A  + +Y+ +  +  ++ ++    Q    +    +++      P+   
Sbjct: 104 VARRLEEGLFKMAVTKEDYMNRSTLESRITSLIKGRQINNYNQRHANSSSVGTMIPTPGL 163

Query: 103 NEPAVNT 109
           ++ A N 
Sbjct: 164 SQTAGNP 170



>gi|28279616|gb|AAH45472.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Danio rerio]
          Length = 809

 Score = 34.1 bits (77), Expect = 0.35
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 1   MDTTG---DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNA 57
           MD  G   DWR+    A R ++V +I E   K              K +   E  +F  A
Sbjct: 1   MDVPGPDSDWRS---PAFRQKVVAQIEEAMRKAGTGHT--------KSSTEMESHVFTKA 49

Query: 58  SNQTEYLRQICMKMLNMETKSQNAAGSSSADDN-TPPLVPEPSV 100
             + EYL  +   +++     + A G     +         P V
Sbjct: 50  KTREEYLSMVARLIIHFRDIHKKAQGGPDPINALQNLPGGVPGV 93



>gi|7487910|pir||T01055   hypothetical protein YUP8H12R.38 - Arabidopsis thaliana
 gi|3152587|gb|AAC17068.1|   Similar to CREB-binding protein homolog gb|U88570 from D.
           melanogaster and contains similarity to
           callus-associated protein gb|U01961 from Nicotiana
           tabacum.  EST gb|W43427 comes from this gene.
           [Arabidopsis thaliana]
          Length = 1516

 Score = 33.7 bits (76), Expect = 0.46
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 15  SRSRIVNKIMETQLKQLPFIRPEGTN-ELRKIAVRFEEKLFNNASNQTEYLRQICM--KM 71
            R  +  +I     ++ P    E +  +   +A R EE LF  A+ + +Y+    +  ++
Sbjct: 51  LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDYVNPSTLEPRL 110

Query: 72  LNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNT 109
            ++    Q    +    +++      P+        N 
Sbjct: 111 ASLIKGRQLNNYNQRHANSSSVGTMIPTPGLQHSGGNP 148



>gi|18412221|ref|NP_565197.1|   p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
 gi|12597461|gb|AAG60059.1|   p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
          Length = 1654

 Score = 33.7 bits (76), Expect = 0.56
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 15  SRSRIVNKIMETQLKQLPFIRPEGTN-ELRKIAVRFEEKLFNNASNQTEYLRQICM--KM 71
            R  +  +I     ++ P    E +  +   +A R EE LF  A+ + +Y+    +  ++
Sbjct: 51  LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDYVNPSTLEPRL 110

Query: 72  LNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNT 109
            ++    Q    +    +++      P+        N 
Sbjct: 111 ASLIKGRQLNNYNQRHANSSSVGTMIPTPGLQHSGGNP 148






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jun 26, 2003  1:47 AM
  Number of letters in database: 468,778,868
  Number of sequences in database:  1,459,938
  
Lambda     K      H
   0.318    0.156    0.424 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,777,715
Number of Sequences: 1459938
Number of extensions: 5770587
Number of successful extensions: 30960
Number of sequences better than  1.0: 53
Number of HSP's better than  1.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 30840
Number of HSP's gapped (non-prelim): 134
length of query: 145
length of database: 468,778,868
effective HSP length: 121
effective length of query: 24
effective length of database: 292,126,370
effective search space: 7011032880
effective search space used: 7011032880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)