BLASTP 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1056973191-027730-19786

Query= At1g15790 [1-145]
         (145 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,459,938 sequences; 468,778,868 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs



Results of PSI-Blast iteration 2

Skip to the first new sequence

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|22329593|ref|NP_173031.2|  expressed protein [Arabidopsis thal...   258   1e-68 

 gi|15218294|ref|NP_173030.1|  expressed protein [Arabidopsis thal...   195   8e-50 

 gi|25511635|pir||B86292  F7H2.12 protein - Arabidopsis thaliana >...   180   2e-45 

 gi|24461860|gb|AAN62347.1|AF506028_14  CTV.20 [Poncirus trifoliata]    166   5e-41 

 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]    163   5e-40 

 gi|28071313|dbj|BAC56002.1|  P0705A05.20 [Oryza sativa (japonica ...   159   6e-39 

 gi|27260984|dbj|BAC45101.1|  OJ1705_C03.23 [Oryza sativa (japonic...    59   9e-09 

 gi|7493813|pir||T18235  transcription activator GAL11 homolog - y...    46   1e-04 

 gi|15226772|ref|NP_178842.1|  hypothetical protein [Arabidopsis t...    41   0.002 


Sequences with E-value WORSE than threshold


 gi|24581615|ref|NP_523471.2|  ABC transporter expressed in trache...    38   0.032 

 gi|21430566|gb|AAM50961.1|  RE01860p [Drosophila melanogaster]          38   0.032 

 gi|28926419|gb|EAA35394.1|  hypothetical protein [Neurospora crassa]    36   0.094 


Alignments








>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
           [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score =  258 bits (659), Expect = 1e-68
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60
           MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ
Sbjct: 1   MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60

Query: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS 120
           TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS
Sbjct: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDS 120

Query: 121 RQKNINALLDTLKKIVPHSGKEGID 145
           RQKNINALLDTLKKIVPHSGKEGID
Sbjct: 121 RQKNINALLDTLKKIVPHSGKEGID 145




 Score = 94.3 bits (233), Expect = 3e-19
 Identities = 34/71 (47%), Positives = 47/71 (66%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           TGDWRTQ P  SR + +N +++T  K +P    EG +EL +IAV  EE +FN+A NQ +Y
Sbjct: 109 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 168

Query: 64  LRQICMKMLNM 74
           L +I +KM  M
Sbjct: 169 LGKISLKMRTM 179



>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  195 bits (496), Expect = 8e-50
 Identities = 69/115 (60%), Positives = 79/115 (68%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQT+Y
Sbjct: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDY 78

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQ 118
           LR+I MKML METKSQNAAGSS+A           S+P N+  +  G   T Q Q
Sbjct: 79  LRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPTNQGQLLPGSLSTNQSQ 133




 Score = 90.0 bits (222), Expect = 5e-18
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+
Sbjct: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN 55



>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  180 bits (458), Expect = 2e-45
 Identities = 69/146 (47%), Positives = 79/146 (54%), Gaps = 31/146 (21%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ--- 60
           TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQ   
Sbjct: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQRFV 78

Query: 61  ----------------------------TEYLRQICMKMLNMETKSQNAAGSSSADDNTP 92
                                       T+YLR+I MKML METKSQNAAGSS+A     
Sbjct: 79  RQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTMETKSQNAAGSSAAIPAAN 138

Query: 93  PLVPEPSVPNNEPAVNTGDWRTQQPQ 118
                 S+P N+  +  G   T Q Q
Sbjct: 139 NGTSIDSIPTNQGQLLPGSLSTNQSQ 164




 Score = 90.8 bits (224), Expect = 3e-18
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+
Sbjct: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN 55



>gi|24461860|gb|AAN62347.1|AF506028_14   CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score =  166 bits (421), Expect = 5e-41
 Identities = 52/105 (49%), Positives = 71/105 (67%), Gaps = 7/105 (6%)

Query: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
           DWR      SR RIVNKIM+T  + LPF  PEG NEL++IA RFEEK+F +A++Q++YLR
Sbjct: 16  DWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYLR 75

Query: 66  QICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTG 110
           +I +KML+ME++SQNA+GS     N PP       P  +  ++T 
Sbjct: 76  KISLKMLSMESRSQNASGS-----NEPPHPGIK--PLTKEGLDTS 113




 Score = 83.9 bits (206), Expect = 4e-16
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 107 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           ++  DWR     DSRQ+ +N ++DTLK+ +P SG EG++
Sbjct: 12  LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLN 50



>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  163 bits (412), Expect = 5e-40
 Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 6/125 (4%)

Query: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63
           TGDWRTQ    SR RIVNKIM+T  + LPF   +G NEL+KIA RFEEK++  AS+Q++Y
Sbjct: 34  TGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDY 93

Query: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPN------NEPAVNTGDWRTQQP 117
           LR+I +KML+ME+KSQNA  +S   +N       P   +      N+           Q 
Sbjct: 94  LRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPGSMQNQVHNQGQSLPIPLSANQS 153

Query: 118 QDSRQ 122
           Q  +Q
Sbjct: 154 QVRQQ 158




 Score = 89.3 bits (220), Expect = 9e-18
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID 145
           P+ P  E  ++TGDWRTQ   DSRQ+ +N ++DTLK+ +P SG++G++
Sbjct: 23  PTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLN 70



>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  159 bits (403), Expect = 6e-39
 Identities = 51/93 (54%), Positives = 68/93 (73%)

Query: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64
           GDWR+Q  S +R+RIVNKIM+T  K LP   PEG NEL+KIAVRFEEK++  A++Q++YL
Sbjct: 35  GDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYL 94

Query: 65  RQICMKMLNMETKSQNAAGSSSADDNTPPLVPE 97
           R+I +KML+METK+Q   G++    N  P   E
Sbjct: 95  RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSE 127




 Score = 62.7 bits (151), Expect = 8e-10
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 80  NAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHS 139
           N   +  AD      + +P+ P   PA+  GDWR+Q   ++R + +N ++DTLKK +P S
Sbjct: 8   NWRPTQGADPAASGGI-DPNAPA--PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVS 64

Query: 140 GKEGID 145
             EG++
Sbjct: 65  VPEGLN 70



>gi|27260984|dbj|BAC45101.1|   OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score = 59.2 bits (142), Expect = 9e-09
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65
          DWRT+     R R+   I+ +   +L         +L+K+A R EE+++  A +  +YLR
Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71

Query: 66 QICM 69
          +I +
Sbjct: 72 RISL 75



>gi|7493813|pir||T18235   transcription activator GAL11 homolog - yeast (Candida albicans)
 gi|3859719|emb|CAA21993.1|   possible regulatory protein [Candida albicans]
          Length = 1145

 Score = 45.7 bits (107), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 7   WRTQFPSASRSRIVNKIMETQLKQLPFIRPE-GTNELRKIAVRFEEKLFNNASNQTEYLR 65
           WR  +    R ++V  I+ T   +L    P      L K+A  FE+ ++  ++++ +YLR
Sbjct: 23  WRAMYSGEERQKVVQIIINTLT-ELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLR 81

Query: 66  QICMKMLNMETKSQNAAGS 84
            I MK+  +  + Q  A +
Sbjct: 82  AIKMKVHQLRVQKQQIAAN 100



>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score = 41.5 bits (96), Expect = 0.002
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQT 61
          DWR+Q     R ++++KI+E   ++         N+   IA +FEE  ++ A+++T
Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDKT 76



>gi|24581615|ref|NP_523471.2|   ABC transporter expressed in trachea CG2969-PA [Drosophila
           melanogaster]
 gi|24581617|ref|NP_722971.1|   ABC transporter expressed in trachea CG2969-PB [Drosophila
           melanogaster]
 gi|7295722|gb|AAF51027.1|   CG2969-PA [Drosophila melanogaster]
 gi|22945222|gb|AAN10342.1|   CG2969-PB [Drosophila melanogaster]
          Length = 832

 Score = 37.6 bits (86), Expect = 0.032
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 76  TKSQNAAGSSSADDNTPPLVP---EPSVPNNEPA-VNTGDWRTQQPQDSRQKNINALLDT 131
           + ++NA    + +D  PPL     EPS+P ++PA +      TQQ Q+S    +N   + 
Sbjct: 443 SGAENAMAILTLEDEKPPLEDRQLEPSIPVDDPAELKPPKLETQQSQNSDCSVVNMPTNA 502

Query: 132 LKKIVPHSGKEG 143
           +      S  +G
Sbjct: 503 VDDSCSFSSSKG 514



>gi|21430566|gb|AAM50961.1|   RE01860p [Drosophila melanogaster]
          Length = 832

 Score = 37.6 bits (86), Expect = 0.032
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 76  TKSQNAAGSSSADDNTPPLVP---EPSVPNNEPA-VNTGDWRTQQPQDSRQKNINALLDT 131
           + ++NA    + +D  PPL     EPS+P ++PA +      TQQ Q+S    +N   + 
Sbjct: 443 SGAENAMAILTLEDEKPPLEDRQLEPSIPVDDPAELKPPKLETQQSQNSDCSVVNMPTNA 502

Query: 132 LKKIVPHSGKEG 143
           +      S  +G
Sbjct: 503 VDDSCSFSSSKG 514



>gi|28926419|gb|EAA35394.1|   hypothetical protein [Neurospora crassa]
          Length = 1562

 Score = 36.1 bits (82), Expect = 0.094
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 72  LNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVN--TGDWRTQQPQDSRQKNINALL 129
           ++ME+++  A  S +   +   + P PS   ++P      G+  ++Q  D++    +   
Sbjct: 271 MSMESRTSRARRSLNVVRDEVEMTPVPSPLPHQPNEMDFPGEGSSRQV-DNKYALQDIKG 329

Query: 130 DTLKKIVPHSGK 141
           D + + +P SGK
Sbjct: 330 DLVNRNLPISGK 341






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jun 26, 2003  1:47 AM
  Number of letters in database: 468,778,868
  Number of sequences in database:  1,459,938
  
Lambda     K      H
   0.318    0.149    0.410 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,377,808
Number of Sequences: 1459938
Number of extensions: 5273911
Number of successful extensions: 21283
Number of sequences better than  1.0: 26
Number of HSP's better than  1.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 21206
Number of HSP's gapped (non-prelim): 85
length of query: 145
length of database: 468,778,868
effective HSP length: 121
effective length of query: 24
effective length of database: 292,126,370
effective search space: 7011032880
effective search space used: 7011032880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)