BLASTP 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1057255545-023009-9805

Query= PCAP_HUMAN
         (128 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,463,011 sequences; 469,658,079 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs



Results of PSI-Blast iteration 4

Skip to the first new sequence

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|21312134|ref|NP_056973.2|  positive cofactor 2, glutamine/Q-ri...   201   1e-51 

 gi|14276857|gb|AAK58423.1|AF328769_1  PC2-glutamine-rich-associat...   201   1e-51 

 gi|27734440|sp|Q96RN5|PCAP_HUMAN  Positive cofactor 2 glutamine/Q...   200   4e-51 

 gi|21748618|dbj|BAC03446.1|  FLJ00386 protein [Homo sapiens]           200   4e-51 

 gi|20177999|sp|Q924H2|PCAP_MOUSE  Positive cofactor 2 glutamine/Q...   188   1e-47 

 gi|15809028|ref|NP_291087.1|  positive cofactor 2, glutamine/Q-ri...   183   3e-46 

 gi|28374176|gb|AAH46263.1|  Similar to PC2 (positive cofactor 2, ...   164   3e-40 

 gi|28279616|gb|AAH45472.1|  Similar to PC2 (positive cofactor 2, ...   153   5e-37 

 gi|21956190|gb|AAM83255.1|AF378334_1  ARC105 [Xenopus laevis]          149   8e-36 

 gi|3037135|gb|AAC12944.1|  TPA inducible protein [Homo sapiens]        148   1e-35 

 gi|20891927|ref|XP_147188.1|  positive cofactor 2, multiprotein c...   142   1e-33 

 gi|25148756|ref|NP_741152.1|  Putative nuclear protein, nematode ...   133   4e-31 

 gi|25148761|ref|NP_741151.1|  Putative nuclear protein, nematode ...   130   4e-30 

 gi|19920468|ref|NP_608528.1|  CG4184-PA [Drosophila melanogaster]...   113   5e-25 

 gi|7506661|pir||T16726  hypothetical protein R12B2.5 - Caenorhabd...   106   8e-23 

 gi|17567279|ref|NP_509376.1|  KIX domain containing protein famil...    96   7e-20 

 gi|631119|pir||S39162  transcription coactivator CREB-binding pro...    41   0.003 

 gi|4758056|ref|NP_004371.1|  CREB binding protein [Homo sapiens] ...    41   0.003 

 gi|4321116|gb|AAC51331.2|  CREB-binding protein [Homo sapiens]          41   0.003 


Sequences with E-value WORSE than threshold


 gi|2996629|gb|AAC08447.1|  CBP [Homo sapiens]                           39   0.020 

 gi|1345703|sp|P45481|CBP_MOUSE  CREB-binding protein >gi|481698|p...    38   0.021 

 gi|737920|prf||1923401A  protein CBP                                    38   0.021 

 gi|19547885|gb|AAL87531.1|  CREB-binding protein [Mus musculus] >...    38   0.025 

 gi|482238|pir||S41033  hypothetical protein K03H1.10 - Caenorhabd...    38   0.037 

 gi|17554044|ref|NP_499201.1|  TAZ zinc finger and KIX domain cont...    38   0.044 

 gi|22329593|ref|NP_173031.2|  expressed protein [Arabidopsis thal...    37   0.051 

 gi|18044907|gb|AAH20162.1|  RIKEN cDNA 6720467C03 [Mus musculus]        37   0.062 

 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]     37   0.062 

 gi|12859857|dbj|BAB31798.1|  unnamed protein product [Mus musculus]     36   0.083 

 gi|31980897|ref|NP_080834.2|  RIKEN cDNA 6720467C03 [Mus musculus...    36   0.10  

 gi|26347249|dbj|BAC37273.1|  unnamed protein product [Mus musculus]     36   0.10  

 gi|15642209|ref|NP_231842.1|  ferric vibriobactin receptor [Vibri...    36   0.14  

 gi|17508483|ref|NP_493598.1|  UNCoordinated locomotion UNC-122, O...    35   0.27  

 gi|17552402|ref|NP_497144.1|  TAZ zinc finger family member [Caen...    34   0.40  

 gi|28972564|dbj|BAC65698.1|  mKIAA1002 protein [Mus musculus]           33   0.86  

 gi|17939907|emb|CAD19511.1|  UL36 protein [Pseudorabies virus]          33   0.92  


Alignments








>gi|21312134|ref|NP_056973.2|   positive cofactor 2, glutamine/Q-rich-associated protein; TPA
           inducible protein; TPA inducible gene-1;
           PC2-glutamine-rich-associated protein; trinucleotide
           repeat containing 7 [Homo sapiens]
 gi|15559260|gb|AAH13985.1|AAH13985   PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Homo sapiens]
          Length = 748

 Score =  201 bits (513), Expect = 1e-51
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|14276857|gb|AAK58423.1|AF328769_1   PC2-glutamine-rich-associated protein [Homo sapiens]
          Length = 746

 Score =  201 bits (513), Expect = 1e-51
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|27734440|sp|Q96RN5|PCAP_HUMAN   Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (TPA-inducible
           gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa
           component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score =  200 bits (509), Expect = 4e-51
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|21748618|dbj|BAC03446.1|   FLJ00386 protein [Homo sapiens]
          Length = 811

 Score =  200 bits (508), Expect = 4e-51
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 24  MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 83

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 84  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 143

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 144 QPMSLSGQ 151



>gi|20177999|sp|Q924H2|PCAP_MOUSE   Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score =  188 bits (479), Expect = 1e-47
 Identities = 120/128 (93%), Positives = 121/128 (94%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV GQETDWRS AFR KLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMG 120

Query: 121 QPMSLSGQ 128
           QP+ LSGQ
Sbjct: 121 QPLPLSGQ 128



>gi|15809028|ref|NP_291087.1|   positive cofactor 2, glutamine/Q-rich-associated protein [Mus
           musculus]
 gi|14276859|gb|AAK58424.1|AF328770_1   PC2-glutamine-rich-associated protein [Mus musculus]
          Length = 667

 Score =  183 bits (466), Expect = 3e-46
 Identities = 120/128 (93%), Positives = 121/128 (94%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV GQETDWRS AFR KLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMG 120

Query: 121 QPMSLSGQ 128
           QP+ LSGQ
Sbjct: 121 QPLPLSGQ 128



>gi|28374176|gb|AAH46263.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Xenopus laevis]
          Length = 846

 Score =  164 bits (415), Expect = 3e-40
 Identities = 77/112 (68%), Positives = 90/112 (80%)

Query: 17  QKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQA 76
           QKLVSQI++AMRKAGVAH+KSSK+MESHVFLKAKTR+EYLSLVARLIIHFRDI NKK+Q 
Sbjct: 1   QKLVSQIDEAMRKAGVAHTKSSKEMESHVFLKAKTREEYLSLVARLIIHFRDIFNKKNQT 60

Query: 77  SVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           + SDPMNALQ+LTG    G  G+GM  R  G  +G MG +  + Q M+L GQ
Sbjct: 61  AASDPMNALQNLTGNAVVGGQGMGMGVRPQGAQMGAMGGMTQIAQQMNLPGQ 112



>gi|28279616|gb|AAH45472.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Danio rerio]
          Length = 809

 Score =  153 bits (387), Expect = 5e-37
 Identities = 69/108 (63%), Positives = 82/108 (75%), Gaps = 7/108 (6%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV G ++DWRS AFRQK+V+QIE+AMRKAG  H+KSS +MESHVF KAKTR+EYLS+VA
Sbjct: 1   MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQ 108
           RLIIHFRDIH KK+Q    DP+NALQ+L      G     + PR PG 
Sbjct: 61  RLIIHFRDIH-KKAQGG-PDPINALQNL-----PGGVPGVIGPRPPGA 101



>gi|21956190|gb|AAM83255.1|AF378334_1   ARC105 [Xenopus laevis]
          Length = 754

 Score =  149 bits (376), Expect = 8e-36
 Identities = 71/102 (69%), Positives = 80/102 (78%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAH+KSSKDMESHVFLKAKTR+EYLSLVARLIIHFRDI NKKSQA+ +DPMNALQ
Sbjct: 1   MRKAGVAHTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           +LTG    G  G+GM  R  G  +G M  +  M Q M+L GQ
Sbjct: 61  NLTGTAVVGGQGMGMGVRPQGAQMGAMSGMAQMAQQMNLPGQ 102



>gi|3037135|gb|AAC12944.1|   TPA inducible protein [Homo sapiens]
          Length = 579

 Score =  148 bits (375), Expect = 1e-35
 Identities = 101/102 (99%), Positives = 101/102 (99%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ
Sbjct: 1   MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           SLTGGPAAGAAGIGMPPRGPGQSLGGMGS GAMGQPMSLSGQ
Sbjct: 61  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSFGAMGQPMSLSGQ 102



>gi|20891927|ref|XP_147188.1|   positive cofactor 2, multiprotein complex,
           glutamine/Q-rich-associated protein [Mus musculus]
          Length = 763

 Score =  142 bits (358), Expect = 1e-33
 Identities = 97/102 (95%), Positives = 98/102 (96%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ
Sbjct: 1   MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           SLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMGQP+ LSGQ
Sbjct: 61  SLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMGQPLPLSGQ 102



>gi|25148756|ref|NP_741152.1|   Putative nuclear protein, nematode specific [Caenorhabditis
           elegans]
 gi|21363104|sp|Q21955|YNL5_CAEEL   Hypothetical protein R12B2.5 in chromosome III
 gi|17976542|gb|AAA50743.3|   Hypothetical protein R12B2.5a [Caenorhabditis elegans]
          Length = 780

 Score =  133 bits (336), Expect = 4e-31
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 17/117 (14%)

Query: 7   ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
           E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3   EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQ---------SLTGGPAAGAAGIGMPPRGPGQS 109
           +I     I+     A+V   +   Q         +L G   AG       P  P   
Sbjct: 63  VI---NAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116



>gi|25148761|ref|NP_741151.1|   Putative nuclear protein, nematode specific [Caenorhabditis
           elegans]
 gi|21450526|gb|AAM54164.1|U00066_6   Hypothetical protein R12B2.5b [Caenorhabditis elegans]
          Length = 777

 Score =  130 bits (328), Expect = 4e-30
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 7   ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
           E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3   EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQ------SLTGGPAAGAAGIGMPPRGPGQS 109
           +I     I+     A+V   +   Q      +  G   AG       P  P   
Sbjct: 63  VI---NAINCNSKSAAVPSVLQPSQFHSPPCTTAGNTPAGGTPGYRAPVPPDPQ 113



>gi|19920468|ref|NP_608528.1|   CG4184-PA [Drosophila melanogaster]
 gi|5052530|gb|AAD38595.1|AF145620_1   BcDNA.GH03922 [Drosophila melanogaster]
 gi|7296198|gb|AAF51490.1|   CG4184-PA [Drosophila melanogaster]
          Length = 749

 Score =  113 bits (284), Expect = 5e-25
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 21/102 (20%)

Query: 8   TDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFR 67
            DW+S  FRQ ++S+I D +       +K++  ME+H+F K++T+DEYL LVA+L +H++
Sbjct: 3   EDWQSQKFRQNVISKIHDLLPPNAQDQTKNAGVMENHIFRKSRTKDEYLGLVAKLFMHYK 62

Query: 68  DIHNKK---------------------SQASVSDPMNALQSL 88
           D+  K                       Q  + DP+NALQ+L
Sbjct: 63  DMSRKSQQQQQQQQQQGGPPPNAEMGGGQNMMQDPLNALQNL 104



>gi|7506661|pir||T16726   hypothetical protein R12B2.5 - Caenorhabditis elegans
          Length = 760

 Score =  106 bits (264), Expect = 8e-23
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 7  ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
          E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3  EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62 LIIHFRDIHNKKSQASVSDPMNALQ 86
          +I     I+     A+V   +   Q
Sbjct: 63 VI---NAINCNSKSAAVPSVLQPSQ 84



>gi|17567279|ref|NP_509376.1|   KIX domain containing protein family member [Caenorhabditis
           elegans]
 gi|7499689|pir||T16139   hypothetical protein F22F1.3 - Caenorhabditis elegans
 gi|1118044|gb|AAA83283.1|   Hypothetical protein F22F1.3 [Caenorhabditis elegans]
          Length = 295

 Score = 96.5 bits (239), Expect = 7e-20
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 16  RQKLVSQI-EDAMRKAGVAHSKSSKD---------MESHVFLKAKTRDEYLSLVARLIIH 65
           RQ ++++I  +A+ +        ++          ME   F K +T+DEY + +AR+I+ 
Sbjct: 71  RQYMITKIVREAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELARIILS 130

Query: 66  FRDIHNKKSQASVSDP 81
            +     + + S  DP
Sbjct: 131 MQKHLQSRPKGSYEDP 146



>gi|631119|pir||S39162   transcription coactivator CREB-binding protein - human
          Length = 2440

 Score = 41.0 bits (95), Expect = 0.003
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 12  STAFRQKLVSQIEDAM-RKAGVAHSKS---------SKDMESHVFLKAKTRDEYLSLVAR 61
           +   R  LV ++  A+      A  K          +K +E  ++  A +RDEY  L+A 
Sbjct: 597 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 656

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQS 109
            I   +    +K ++ +       Q + G   A  A    PP  P   
Sbjct: 657 KIYKIQKELEEKRRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQ 699



>gi|4758056|ref|NP_004371.1|   CREB binding protein [Homo sapiens]
 gi|3023440|sp|Q92793|CBP_HUMAN   CREB-binding protein
 gi|2443859|gb|AAC51770.1|   CREB-binding protein
          Length = 2442

 Score = 41.0 bits (95), Expect = 0.003
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 12  STAFRQKLVSQIEDAM-RKAGVAHSKS---------SKDMESHVFLKAKTRDEYLSLVAR 61
           +   R  LV ++  A+      A  K          +K +E  ++  A +RDEY  L+A 
Sbjct: 597 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 656

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQS 109
            I   +    +K ++ +       Q + G   A  A    PP  P   
Sbjct: 657 KIYKIQKELEEKRRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQ 699



>gi|4321116|gb|AAC51331.2|   CREB-binding protein [Homo sapiens]
          Length = 2442

 Score = 41.0 bits (95), Expect = 0.003
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 12  STAFRQKLVSQIEDAM-RKAGVAHSKS---------SKDMESHVFLKAKTRDEYLSLVAR 61
           +   R  LV ++  A+      A  K          +K +E  ++  A +RDEY  L+A 
Sbjct: 597 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 656

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQS 109
            I   +    +K ++ +       Q + G   A  A    PP  P   
Sbjct: 657 KIYKIQKELEEKRRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQ 699



>gi|2996629|gb|AAC08447.1|   CBP [Homo sapiens]
          Length = 555

 Score = 38.7 bits (89), Expect = 0.020
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 12  STAFRQKLVSQIEDAM-RKAGVAHSKS---------SKDMESHVFLKAKTRDEYLSLVAR 61
           +   R  LV ++  A+      A  K          +K +E  ++  A +RDEY  L+A 
Sbjct: 331 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 390

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQS 109
            I   +    +K ++ +       Q + G   A  A    PP  P   
Sbjct: 391 KIYKIQKELEEKRRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQ 433



>gi|1345703|sp|P45481|CBP_MOUSE   CREB-binding protein
 gi|481698|pir||S39161   CREB-binding protein - mouse
 gi|435855|gb|AAB28651.1|   CREB-binding protein; CBP [Mus sp.]
          Length = 2441

 Score = 38.3 bits (88), Expect = 0.021
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 15/108 (13%)

Query: 12  STAFRQKLVSQIEDAM-RKAGVAHSKS---------SKDMESHVFLKAKTRDEYLSLVAR 61
           +   R  LV ++  A+      A  K          +K +E  ++  A +RDEY  L+A 
Sbjct: 596 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 655

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQS 109
            I   +    +K +  +       Q + G   A  A    PP  P   
Sbjct: 656 KIYKIQKELEEKRRTRLHK-----QGILGNQPALPASGAQPPVIPPAQ 698



>gi|737920|prf||1923401A   protein CBP
          Length = 2441

 Score = 38.3 bits (88), Expect = 0.021
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 15/108 (13%)

Query: 12  STAFRQKLVSQIEDAM-RKAGVAHSKS---------SKDMESHVFLKAKTRDEYLSLVAR 61
           +   R  LV ++  A+      A  K          +K +E  ++  A +RDEY  L+A 
Sbjct: 596 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 655

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQS 109
            I   +    +K +  +       Q + G   A  A    PP  P   
Sbjct: 656 KIYKIQKELEEKRRTRLHK-----QGILGNQPALPASGAQPPVIPPAQ 698



>gi|19547885|gb|AAL87531.1|   CREB-binding protein [Mus musculus]
 gi|19547887|gb|AAL87532.1|   CREB-binding protein [Mus musculus]
          Length = 2429

 Score = 38.3 bits (88), Expect = 0.025
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 12  STAFRQKLVSQIEDAM-RKAGVAHSKS---------SKDMESHVFLKAKTRDEYLSLVAR 61
           +   R  LV ++  A+      A  K          +K +E  ++  A +RDEY  L+A 
Sbjct: 590 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 649

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQS 109
            I   +    +K ++ +       Q + G   A  A    PP  P   
Sbjct: 650 KIYKIQKELEEKRRSRLHK-----QGILGNQPALPASGAQPPVIPPAQ 692



>gi|482238|pir||S41033   hypothetical protein K03H1.10 - Caenorhabditis elegans  (fragment)
          Length = 316

 Score = 37.5 bits (86), Expect = 0.037
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 2   DVSGQETDWRST---AFRQKLVSQIEDAMRKA----GVAHSKS----SKDMESHVFLKAK 50
           +V  +  +W        R  +V ++  A+  A         K     ++ +E  VF  A 
Sbjct: 155 NVPVRTKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYARKVEKEVFETAI 214

Query: 51  TRDEYLSLVARLIIHFRDIHNKKS-----QASVSDPM 82
            R  Y  L+A  I   +    +K      Q +   P+
Sbjct: 215 DRKNYYHLLAEKIYEIQKELQEKKNSRLNQGAAQSPL 251



>gi|17554044|ref|NP_499201.1|   TAZ zinc finger and KIX domain containing protein family member
           (36.7 kD) [Caenorhabditis elegans]
 gi|25395947|pir||D88569   protein K03H1.10 [imported] - Caenorhabditis elegans
 gi|3877003|emb|CAA82940.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
 gi|3878179|emb|CAA82665.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
          Length = 322

 Score = 37.5 bits (86), Expect = 0.044
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 2   DVSGQETDWRST---AFRQKLVSQIEDAMRKAGV--------AHSKSSKDMESHVFLKAK 50
           +V  +  +W        R  +V ++  A+  A            +  ++ +E  VF  A 
Sbjct: 161 NVPVRTKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYARKVEKEVFETAI 220

Query: 51  TRDEYLSLVARLIIHFRDIHNKKS-----QASVSDPM 82
            R  Y  L+A  I   +    +K      Q +   P+
Sbjct: 221 DRKNYYHLLAEKIYEIQKELQEKKNSRLNQGAAQSPL 257



>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
           [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score = 37.1 bits (85), Expect = 0.051
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 1   MDVSGQETDWRST---AFRQKLVSQIEDA-------MRKAGVAH-SKSSKDMESHVFLKA 49
           MD +G   DWR+    A R ++V++I +        +R  G     K +   E  +F  A
Sbjct: 1   MDTTG---DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNA 57

Query: 50  KTRDEYLSLVARLIIHFRDIHNKKSQASVSD----PMNALQSLTGGPAAGAAGIGMPPRG 105
             + EYL  +   +++        + +S +D    P+    S+     A   G     + 
Sbjct: 58  SNQTEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVPNNEPAVNTGDWRTQQP 117

Query: 106 PG 107
             
Sbjct: 118 QD 119



>gi|18044907|gb|AAH20162.1|   RIKEN cDNA 6720467C03 [Mus musculus]
          Length = 286

 Score = 36.7 bits (84), Expect = 0.062
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 11  RSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHV--FLKAKTRD 53
           R+ + R  ++SQ E  +++A +  +++S+ +E  +  F K K +D
Sbjct: 136 RNPSDR-HVISQAETELQRATIDATRTSRHLEETIDNFEKQKIKD 179



>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score = 36.7 bits (84), Expect = 0.062
 Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 15/113 (13%)

Query: 9   DWRS---TAFRQKLVSQIEDAMRK----AGVAH----SKSSKDMESHVFLKAKTRDEYLS 57
           DWR+      RQ++V++I D +++    +G        K +   E  ++  A ++ +YL 
Sbjct: 36  DWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDYLR 95

Query: 58  LVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSL 110
            ++  ++        KSQ ++ + + +    +         +       GQSL
Sbjct: 96  KISLKMLSME----SKSQNAMPNSLQSNNPGSSNRPPDPGSMQNQVHNQGQSL 144



>gi|12859857|dbj|BAB31798.1|   unnamed protein product [Mus musculus]
          Length = 286

 Score = 36.4 bits (83), Expect = 0.083
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 11  RSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHV--FLKAKTRD 53
           R+ + R  ++SQ E  +++A +  +++S+ +E  +  F K K +D
Sbjct: 136 RNPSDR-HVISQAETELQRAPIDATRTSRHLEETIDNFEKQKIKD 179



>gi|31980897|ref|NP_080834.2|   RIKEN cDNA 6720467C03 [Mus musculus]
 gi|26353772|dbj|BAC40516.1|   unnamed protein product [Mus musculus]
          Length = 362

 Score = 36.0 bits (82), Expect = 0.10
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 11  RSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHV--FLKAKTRD 53
           R+ + R  ++SQ E  +++A +  +++S+ +E  +  F K K +D
Sbjct: 212 RNPSDR-HVISQAETELQRATIDATRTSRHLEETIDNFEKQKIKD 255



>gi|26347249|dbj|BAC37273.1|   unnamed protein product [Mus musculus]
          Length = 355

 Score = 36.0 bits (82), Expect = 0.10
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 11  RSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHV--FLKAKTRD 53
           R+ + R  ++SQ E  +++A +  +++S+ +E  +  F K K +D
Sbjct: 205 RNPSDR-HVISQAETELQRATIDATRTSRHLEETIDNFEKQKIKD 248



>gi|15642209|ref|NP_231842.1|   ferric vibriobactin receptor [Vibrio cholerae]
 gi|267356|sp|Q00964|VIUA_VIBCH   Vibriobactin receptor precursor
 gi|282079|pir||A41905   ferric vibriobactin receptor ViuA VC2211 - Vibrio cholerae  (strain
           N16961 serogroup O1)
 gi|2641147|gb|AAB86828.1|   vibriobactin receptor precursor [Vibrio cholerae]
 gi|9656768|gb|AAF95355.1|   ferric vibriobactin receptor [Vibrio cholerae]
          Length = 687

 Score = 35.6 bits (81), Expect = 0.14
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 32  VAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRD-IHNKKSQASVSDPMNALQSLTG 90
              S   ++M   V +  KT+       A + +  +D I        + D +  + +L  
Sbjct: 40  QNTSNQEQEMPVLVVIGEKTQRSIYETSASVEVFDQDTIERTPGATEIDDLLQLIPNLVD 99

Query: 91  GPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLS 126
              +          G G S+GG+ S       +++S
Sbjct: 100 SGQSNNMPTIRGIDGSGPSVGGLASFAGTSPRLNMS 135



>gi|17508483|ref|NP_493598.1|   UNCoordinated locomotion UNC-122, Olfactomedin OFM-1 (unc-122)
           [Caenorhabditis elegans]
 gi|7498900|pir||T20769   hypothetical protein F11C3.2 - Caenorhabditis elegans
 gi|3875750|emb|CAB04088.1|   C. elegans UNC-122 protein (corresponding sequence F11C3.2)
           [Caenorhabditis elegans]
          Length = 598

 Score = 34.8 bits (79), Expect = 0.27
 Identities = 16/68 (23%), Positives = 28/68 (41%)

Query: 53  DEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGG 112
           ++Y  ++ +  I  R++ ++             Q LTG P    +     P GP    G 
Sbjct: 77  EDYTIIIGQDTIIPRNVLDRSCSQVHQYCSEKSQRLTGFPGVRGSPGDQGPVGPPGRRGP 136

Query: 113 MGSLGAMG 120
           MG +G +G
Sbjct: 137 MGIVGPIG 144



>gi|17552402|ref|NP_497144.1|   TAZ zinc finger family member [Caenorhabditis elegans]
 gi|7496697|pir||T33579   hypothetical protein C29F9.6 - Caenorhabditis elegans
 gi|3790688|gb|AAC68748.1|   Hypothetical protein C29F9.6 [Caenorhabditis elegans]
          Length = 228

 Score = 34.0 bits (77), Expect = 0.40
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 4   SGQETDWRS--TAF-RQKLVSQI------EDAMRKAGVAHSKSSKDMESHVFLKAKTRDE 54
            G    W S      R+ ++ +I           +      + ++  E  +F  A +RDE
Sbjct: 114 PGTSQPWHSEVPKTDREAVIERISKHIMLHPQRFEPIWKIKEDARAAELQIFEAAGSRDE 173

Query: 55  YLSLV 59
           Y  +V
Sbjct: 174 YYRMV 178



>gi|28972564|dbj|BAC65698.1|   mKIAA1002 protein [Mus musculus]
          Length = 1070

 Score = 32.9 bits (74), Expect = 0.86
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 70  HNKKSQASVSDPM--NALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQP 122
                Q S   PM   A QS+ GG   G   +      P Q  G   S+G +  P
Sbjct: 712 SQNVVQPSFQQPMLVPASQSVQGGLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPP 766



>gi|17939907|emb|CAD19511.1|   UL36 protein [Pseudorabies virus]
          Length = 3084

 Score = 32.9 bits (74), Expect = 0.92
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 56   LSLVARLIIHFRDIHNKKSQASVS-DPMNALQSLTGGPAAGAAGIGMPP 103
            L   AR  +  RD   +KS A V   P++A +  TGG    A   G PP
Sbjct: 2599 LRTKARTSVGIRDHSRRKSMALVPRRPVSAPRQ-TGGLPPAAQPEGRPP 2646






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jul 1, 2003  3:46 AM
  Number of letters in database: 469,658,079
  Number of sequences in database:  1,463,011
  
Lambda     K      H
   0.318    0.159    0.435 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,422,593
Number of Sequences: 1463011
Number of extensions: 5874018
Number of successful extensions: 29816
Number of sequences better than  1.0: 117
Number of HSP's better than  1.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 29321
Number of HSP's gapped (non-prelim): 342
length of query: 128
length of database: 469,658,079
effective HSP length: 104
effective length of query: 24
effective length of database: 317,504,935
effective search space: 7620118440
effective search space used: 7620118440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)