BLASTP 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1057255495-022042-22912

Query= PCAP_HUMAN
         (128 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,463,011 sequences; 469,658,079 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs



Results of PSI-Blast iteration 3

Skip to the first new sequence

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|21312134|ref|NP_056973.2|  positive cofactor 2, glutamine/Q-ri...   205   1e-52 

 gi|14276857|gb|AAK58423.1|AF328769_1  PC2-glutamine-rich-associat...   205   1e-52 

 gi|27734440|sp|Q96RN5|PCAP_HUMAN  Positive cofactor 2 glutamine/Q...   203   5e-52 

 gi|21748618|dbj|BAC03446.1|  FLJ00386 protein [Homo sapiens]           203   5e-52 

 gi|20177999|sp|Q924H2|PCAP_MOUSE  Positive cofactor 2 glutamine/Q...   193   6e-49 

 gi|15809028|ref|NP_291087.1|  positive cofactor 2, glutamine/Q-ri...   187   2e-47 

 gi|28374176|gb|AAH46263.1|  Similar to PC2 (positive cofactor 2, ...   167   4e-41 

 gi|28279616|gb|AAH45472.1|  Similar to PC2 (positive cofactor 2, ...   152   1e-36 

 gi|21956190|gb|AAM83255.1|AF378334_1  ARC105 [Xenopus laevis]          151   1e-36 

 gi|3037135|gb|AAC12944.1|  TPA inducible protein [Homo sapiens]        151   1e-36 

 gi|20891927|ref|XP_147188.1|  positive cofactor 2, multiprotein c...   145   9e-35 

 gi|25148756|ref|NP_741152.1|  Putative nuclear protein, nematode ...   134   2e-31 

 gi|25148761|ref|NP_741151.1|  Putative nuclear protein, nematode ...   131   2e-30 

 gi|19920468|ref|NP_608528.1|  CG4184-PA [Drosophila melanogaster]...   114   2e-25 

 gi|7506661|pir||T16726  hypothetical protein R12B2.5 - Caenorhabd...   107   3e-23 

 gi|17567279|ref|NP_509376.1|  KIX domain containing protein famil...    41   0.005 


Sequences with E-value WORSE than threshold


 gi|27374486|gb|AAO12425.1|  Hypothetical protein F52E1.13c [Caeno...    36   0.16  

 gi|17561246|ref|NP_505174.1|  LysM domain and GRAM domain contain...    35   0.17  

 gi|17561248|ref|NP_505173.1|  LysM domain and GRAM domain contain...    35   0.19  

 gi|27374484|gb|AAO12423.1|  Hypothetical protein F52E1.13a [Caeno...    35   0.19  

 gi|17508483|ref|NP_493598.1|  UNCoordinated locomotion UNC-122, O...    35   0.24  

 gi|27374487|gb|AAO12426.1|  Hypothetical protein F52E1.13d [Caeno...    34   0.36  

 gi|28302211|gb|AAH46717.1|  Similar to zinc finger protein 162 [X...    33   0.79  


Alignments








>gi|21312134|ref|NP_056973.2|   positive cofactor 2, glutamine/Q-rich-associated protein; TPA
           inducible protein; TPA inducible gene-1;
           PC2-glutamine-rich-associated protein; trinucleotide
           repeat containing 7 [Homo sapiens]
 gi|15559260|gb|AAH13985.1|AAH13985   PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Homo sapiens]
          Length = 748

 Score =  205 bits (521), Expect = 1e-52
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|14276857|gb|AAK58423.1|AF328769_1   PC2-glutamine-rich-associated protein [Homo sapiens]
          Length = 746

 Score =  205 bits (521), Expect = 1e-52
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|27734440|sp|Q96RN5|PCAP_HUMAN   Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (TPA-inducible
           gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa
           component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score =  203 bits (516), Expect = 5e-52
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|21748618|dbj|BAC03446.1|   FLJ00386 protein [Homo sapiens]
          Length = 811

 Score =  203 bits (516), Expect = 5e-52
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 24  MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 83

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 84  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 143

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 144 QPMSLSGQ 151



>gi|20177999|sp|Q924H2|PCAP_MOUSE   Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score =  193 bits (490), Expect = 6e-49
 Identities = 120/128 (93%), Positives = 121/128 (94%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV GQETDWRS AFR KLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMG 120

Query: 121 QPMSLSGQ 128
           QP+ LSGQ
Sbjct: 121 QPLPLSGQ 128



>gi|15809028|ref|NP_291087.1|   positive cofactor 2, glutamine/Q-rich-associated protein [Mus
           musculus]
 gi|14276859|gb|AAK58424.1|AF328770_1   PC2-glutamine-rich-associated protein [Mus musculus]
          Length = 667

 Score =  187 bits (476), Expect = 2e-47
 Identities = 120/128 (93%), Positives = 121/128 (94%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV GQETDWRS AFR KLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMG 120

Query: 121 QPMSLSGQ 128
           QP+ LSGQ
Sbjct: 121 QPLPLSGQ 128



>gi|28374176|gb|AAH46263.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Xenopus laevis]
          Length = 846

 Score =  167 bits (423), Expect = 4e-41
 Identities = 77/112 (68%), Positives = 90/112 (80%)

Query: 17  QKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQA 76
           QKLVSQI++AMRKAGVAH+KSSK+MESHVFLKAKTR+EYLSLVARLIIHFRDI NKK+Q 
Sbjct: 1   QKLVSQIDEAMRKAGVAHTKSSKEMESHVFLKAKTREEYLSLVARLIIHFRDIFNKKNQT 60

Query: 77  SVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           + SDPMNALQ+LTG    G  G+GM  R  G  +G MG +  + Q M+L GQ
Sbjct: 61  AASDPMNALQNLTGNAVVGGQGMGMGVRPQGAQMGAMGGMTQIAQQMNLPGQ 112



>gi|28279616|gb|AAH45472.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Danio rerio]
          Length = 809

 Score =  152 bits (384), Expect = 1e-36
 Identities = 69/108 (63%), Positives = 82/108 (75%), Gaps = 7/108 (6%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV G ++DWRS AFRQK+V+QIE+AMRKAG  H+KSS +MESHVF KAKTR+EYLS+VA
Sbjct: 1   MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQ 108
           RLIIHFRDIH KK+Q    DP+NALQ+L      G     + PR PG 
Sbjct: 61  RLIIHFRDIH-KKAQGG-PDPINALQNL-----PGGVPGVIGPRPPGA 101



>gi|21956190|gb|AAM83255.1|AF378334_1   ARC105 [Xenopus laevis]
          Length = 754

 Score =  151 bits (383), Expect = 1e-36
 Identities = 71/102 (69%), Positives = 80/102 (78%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAH+KSSKDMESHVFLKAKTR+EYLSLVARLIIHFRDI NKKSQA+ +DPMNALQ
Sbjct: 1   MRKAGVAHTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           +LTG    G  G+GM  R  G  +G M  +  M Q M+L GQ
Sbjct: 61  NLTGTAVVGGQGMGMGVRPQGAQMGAMSGMAQMAQQMNLPGQ 102



>gi|3037135|gb|AAC12944.1|   TPA inducible protein [Homo sapiens]
          Length = 579

 Score =  151 bits (383), Expect = 1e-36
 Identities = 101/102 (99%), Positives = 101/102 (99%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ
Sbjct: 1   MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           SLTGGPAAGAAGIGMPPRGPGQSLGGMGS GAMGQPMSLSGQ
Sbjct: 61  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSFGAMGQPMSLSGQ 102



>gi|20891927|ref|XP_147188.1|   positive cofactor 2, multiprotein complex,
           glutamine/Q-rich-associated protein [Mus musculus]
          Length = 763

 Score =  145 bits (367), Expect = 9e-35
 Identities = 97/102 (95%), Positives = 98/102 (96%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ
Sbjct: 1   MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           SLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMGQP+ LSGQ
Sbjct: 61  SLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMGQPLPLSGQ 102



>gi|25148756|ref|NP_741152.1|   Putative nuclear protein, nematode specific [Caenorhabditis
           elegans]
 gi|21363104|sp|Q21955|YNL5_CAEEL   Hypothetical protein R12B2.5 in chromosome III
 gi|17976542|gb|AAA50743.3|   Hypothetical protein R12B2.5a [Caenorhabditis elegans]
          Length = 780

 Score =  134 bits (338), Expect = 2e-31
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 17/117 (14%)

Query: 7   ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
           E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3   EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQ---------SLTGGPAAGAAGIGMPPRGPGQS 109
           +I     I+     A+V   +   Q         +L G   AG       P  P   
Sbjct: 63  VI---NAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116



>gi|25148761|ref|NP_741151.1|   Putative nuclear protein, nematode specific [Caenorhabditis
           elegans]
 gi|21450526|gb|AAM54164.1|U00066_6   Hypothetical protein R12B2.5b [Caenorhabditis elegans]
          Length = 777

 Score =  131 bits (330), Expect = 2e-30
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 7   ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
           E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3   EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQ------SLTGGPAAGAAGIGMPPRGPGQS 109
           +I     I+     A+V   +   Q      +  G   AG       P  P   
Sbjct: 63  VI---NAINCNSKSAAVPSVLQPSQFHSPPCTTAGNTPAGGTPGYRAPVPPDPQ 113



>gi|19920468|ref|NP_608528.1|   CG4184-PA [Drosophila melanogaster]
 gi|5052530|gb|AAD38595.1|AF145620_1   BcDNA.GH03922 [Drosophila melanogaster]
 gi|7296198|gb|AAF51490.1|   CG4184-PA [Drosophila melanogaster]
          Length = 749

 Score =  114 bits (287), Expect = 2e-25
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 21/102 (20%)

Query: 8   TDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFR 67
            DW+S  FRQ ++S+I D +       +K++  ME+H+F K++T+DEYL LVA+L +H++
Sbjct: 3   EDWQSQKFRQNVISKIHDLLPPNAQDQTKNAGVMENHIFRKSRTKDEYLGLVAKLFMHYK 62

Query: 68  DIHNKK---------------------SQASVSDPMNALQSL 88
           D+  K                       Q  + DP+NALQ+L
Sbjct: 63  DMSRKSQQQQQQQQQQGGPPPNAEMGGGQNMMQDPLNALQNL 104



>gi|7506661|pir||T16726   hypothetical protein R12B2.5 - Caenorhabditis elegans
          Length = 760

 Score =  107 bits (268), Expect = 3e-23
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 7  ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
          E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3  EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62 LIIHFRDIHNKKSQASVSDPMNALQ 86
          +I     I+     A+V   +   Q
Sbjct: 63 VI---NAINCNSKSAAVPSVLQPSQ 84



>gi|17567279|ref|NP_509376.1|   KIX domain containing protein family member [Caenorhabditis
           elegans]
 gi|7499689|pir||T16139   hypothetical protein F22F1.3 - Caenorhabditis elegans
 gi|1118044|gb|AAA83283.1|   Hypothetical protein F22F1.3 [Caenorhabditis elegans]
          Length = 295

 Score = 40.7 bits (94), Expect = 0.005
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 16  RQKLVSQI-EDAMRKAGVAHSKSSKD---------MESHVFLKAKTRDEYLSLVARLIIH 65
           RQ ++++I  +A+ +        ++          ME   F K +T+DEY + +AR+I+ 
Sbjct: 71  RQYMITKIVREAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELARIILS 130

Query: 66  FRDIHNKKSQASVSDP 81
            +     + + S  DP
Sbjct: 131 MQKHLQSRPKGSYEDP 146



>gi|27374486|gb|AAO12425.1|   Hypothetical protein F52E1.13c [Caenorhabditis elegans]
          Length = 819

 Score = 35.6 bits (81), Expect = 0.16
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 16  RQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARL--IIHFRDIHNKK 73
           R++ +++++D  R+   A   S+K+  + VF  A + DE   L A +  I+    I +  
Sbjct: 432 REQSLAKLQDLRRQTAEARENSAKENHAGVFACATSSDEAPDLFAAVDEIMERNRIQSND 491

Query: 74  SQASVSDPM 82
           S AS   P+
Sbjct: 492 STAS-QSPI 499



>gi|17561246|ref|NP_505174.1|   LysM domain and GRAM domain containing protein family member
           [Caenorhabditis elegans]
          Length = 817

 Score = 35.3 bits (80), Expect = 0.17
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 16  RQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARL--IIHFRDIHNKK 73
           R++ +++++D  R+   A   S+K+  + VF  A + DE   L A +  I+    I +  
Sbjct: 432 REQSLAKLQDLRRQTAEARENSAKENHAGVFACATSSDEAPDLFAAVDEIMERNRIQSND 491

Query: 74  SQASVSDPM 82
           S AS   P+
Sbjct: 492 STAS-QSPI 499



>gi|17561248|ref|NP_505173.1|   LysM domain and GRAM domain containing protein family member,
           possibly N-myristoylated [Caenorhabditis elegans]
          Length = 838

 Score = 35.3 bits (80), Expect = 0.19
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 16  RQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARL--IIHFRDIHNKK 73
           R++ +++++D  R+   A   S+K+  + VF  A + DE   L A +  I+    I +  
Sbjct: 453 REQSLAKLQDLRRQTAEARENSAKENHAGVFACATSSDEAPDLFAAVDEIMERNRIQSND 512

Query: 74  SQASVSDPM 82
           S AS   P+
Sbjct: 513 STAS-QSPI 520



>gi|27374484|gb|AAO12423.1|   Hypothetical protein F52E1.13a [Caenorhabditis elegans]
          Length = 840

 Score = 35.3 bits (80), Expect = 0.19
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 16  RQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARL--IIHFRDIHNKK 73
           R++ +++++D  R+   A   S+K+  + VF  A + DE   L A +  I+    I +  
Sbjct: 453 REQSLAKLQDLRRQTAEARENSAKENHAGVFACATSSDEAPDLFAAVDEIMERNRIQSND 512

Query: 74  SQASVSDPM 82
           S AS   P+
Sbjct: 513 STAS-QSPI 520



>gi|17508483|ref|NP_493598.1|   UNCoordinated locomotion UNC-122, Olfactomedin OFM-1 (unc-122)
           [Caenorhabditis elegans]
 gi|7498900|pir||T20769   hypothetical protein F11C3.2 - Caenorhabditis elegans
 gi|3875750|emb|CAB04088.1|   C. elegans UNC-122 protein (corresponding sequence F11C3.2)
           [Caenorhabditis elegans]
          Length = 598

 Score = 34.9 bits (79), Expect = 0.24
 Identities = 16/68 (23%), Positives = 28/68 (41%)

Query: 53  DEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGG 112
           ++Y  ++ +  I  R++ ++             Q LTG P    +     P GP    G 
Sbjct: 77  EDYTIIIGQDTIIPRNVLDRSCSQVHQYCSEKSQRLTGFPGVRGSPGDQGPVGPPGRRGP 136

Query: 113 MGSLGAMG 120
           MG +G +G
Sbjct: 137 MGIVGPIG 144



>gi|27374487|gb|AAO12426.1|   Hypothetical protein F52E1.13d [Caenorhabditis elegans]
          Length = 726

 Score = 34.1 bits (77), Expect = 0.36
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 16  RQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARL--IIHFRDIHNKK 73
           R++ +++++D  R+   A   S+K+  + VF  A + DE   L A +  I+    I +  
Sbjct: 453 REQSLAKLQDLRRQTAEARENSAKENHAGVFACATSSDEAPDLFAAVDEIMERNRIQSND 512

Query: 74  SQASVSDPM 82
           S AS   P+
Sbjct: 513 STAS-QSPI 520



>gi|28302211|gb|AAH46717.1|   Similar to zinc finger protein 162 [Xenopus laevis]
          Length = 571

 Score = 33.3 bits (75), Expect = 0.79
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 32/97 (32%)

Query: 30  AGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPM------- 82
           A     +S++D       KA+   EYLSL+A L            +A V  PM       
Sbjct: 289 ARPGEPQSAQD-------KARMDKEYLSLMAEL-----------GEAPVPSPMGPASVPS 330

Query: 83  -NALQ------SLTGGPAAGAAGIGMPPRGPGQSLGG 112
            N +Q      +LTG          M P  P  +L G
Sbjct: 331 HNPVQGGPRPAALTGNTPPMNRPPWMTPDRPFPALHG 367






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jul 1, 2003  3:46 AM
  Number of letters in database: 469,658,079
  Number of sequences in database:  1,463,011
  
Lambda     K      H
   0.318    0.157    0.432 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,908,603
Number of Sequences: 1463011
Number of extensions: 5243482
Number of successful extensions: 24695
Number of sequences better than  1.0: 73
Number of HSP's better than  1.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 24352
Number of HSP's gapped (non-prelim): 212
length of query: 128
length of database: 469,658,079
effective HSP length: 104
effective length of query: 24
effective length of database: 317,504,935
effective search space: 7620118440
effective search space used: 7620118440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)