BLASTP 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1057255429-021165-4101

Query= PCAP_HUMAN
         (128 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,463,011 sequences; 469,658,079 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs



Results of PSI-Blast iteration 2

Skip to the first new sequence

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|21312134|ref|NP_056973.2|  positive cofactor 2, glutamine/Q-ri...   225   7e-59 

 gi|14276857|gb|AAK58423.1|AF328769_1  PC2-glutamine-rich-associat...   225   7e-59 

 gi|27734440|sp|Q96RN5|PCAP_HUMAN  Positive cofactor 2 glutamine/Q...   224   2e-58 

 gi|21748618|dbj|BAC03446.1|  FLJ00386 protein [Homo sapiens]           223   4e-58 

 gi|20177999|sp|Q924H2|PCAP_MOUSE  Positive cofactor 2 glutamine/Q...   215   1e-55 

 gi|15809028|ref|NP_291087.1|  positive cofactor 2, glutamine/Q-ri...   209   5e-54 

 gi|28374176|gb|AAH46263.1|  Similar to PC2 (positive cofactor 2, ...   185   1e-46 

 gi|28279616|gb|AAH45472.1|  Similar to PC2 (positive cofactor 2, ...   171   2e-42 

 gi|3037135|gb|AAC12944.1|  TPA inducible protein [Homo sapiens]        168   1e-41 

 gi|21956190|gb|AAM83255.1|AF378334_1  ARC105 [Xenopus laevis]          168   2e-41 

 gi|20891927|ref|XP_147188.1|  positive cofactor 2, multiprotein c...   164   2e-40 

 gi|19920468|ref|NP_608528.1|  CG4184-PA [Drosophila melanogaster]...   126   7e-29 

 gi|25148756|ref|NP_741152.1|  Putative nuclear protein, nematode ...    41   0.002 

 gi|25148761|ref|NP_741151.1|  Putative nuclear protein, nematode ...    41   0.003 

 gi|7506661|pir||T16726  hypothetical protein R12B2.5 - Caenorhabd...    41   0.004 


Sequences with E-value WORSE than threshold


 gi|17567279|ref|NP_509376.1|  KIX domain containing protein famil...    38   0.029 

 gi|16183127|gb|AAL13635.1|  GH18129p [Drosophila melanogaster]          36   0.082 

 gi|24654263|ref|NP_611162.2|  CG5859-PA [Drosophila melanogaster]...    36   0.097 

 gi|7452615|pir||T13693  hypothetical protein EG0003.5 - fruit fly...    36   0.097 

 gi|23001471|ref|ZP_00045376.1|  hypothetical protein [Magnetococc...    35   0.29  


Alignments








>gi|21312134|ref|NP_056973.2|   positive cofactor 2, glutamine/Q-rich-associated protein; TPA
           inducible protein; TPA inducible gene-1;
           PC2-glutamine-rich-associated protein; trinucleotide
           repeat containing 7 [Homo sapiens]
 gi|15559260|gb|AAH13985.1|AAH13985   PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Homo sapiens]
          Length = 748

 Score =  225 bits (575), Expect = 7e-59
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|14276857|gb|AAK58423.1|AF328769_1   PC2-glutamine-rich-associated protein [Homo sapiens]
          Length = 746

 Score =  225 bits (575), Expect = 7e-59
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|27734440|sp|Q96RN5|PCAP_HUMAN   Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (TPA-inducible
           gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa
           component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score =  224 bits (571), Expect = 2e-58
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 121 QPMSLSGQ 128



>gi|21748618|dbj|BAC03446.1|   FLJ00386 protein [Homo sapiens]
          Length = 811

 Score =  223 bits (569), Expect = 4e-58
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 24  MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 83

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG
Sbjct: 84  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 143

Query: 121 QPMSLSGQ 128
           QPMSLSGQ
Sbjct: 144 QPMSLSGQ 151



>gi|20177999|sp|Q924H2|PCAP_MOUSE   Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score =  215 bits (548), Expect = 1e-55
 Identities = 120/128 (93%), Positives = 121/128 (94%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV GQETDWRS AFR KLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMG 120

Query: 121 QPMSLSGQ 128
           QP+ LSGQ
Sbjct: 121 QPLPLSGQ 128



>gi|15809028|ref|NP_291087.1|   positive cofactor 2, glutamine/Q-rich-associated protein [Mus
           musculus]
 gi|14276859|gb|AAK58424.1|AF328770_1   PC2-glutamine-rich-associated protein [Mus musculus]
          Length = 667

 Score =  209 bits (533), Expect = 5e-54
 Identities = 120/128 (93%), Positives = 121/128 (94%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV GQETDWRS AFR KLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA
Sbjct: 1   MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMG 120
           RLIIHFRDIHNKKSQASVSDPMNALQSLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMG
Sbjct: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMG 120

Query: 121 QPMSLSGQ 128
           QP+ LSGQ
Sbjct: 121 QPLPLSGQ 128



>gi|28374176|gb|AAH46263.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Xenopus laevis]
          Length = 846

 Score =  185 bits (469), Expect = 1e-46
 Identities = 77/112 (68%), Positives = 90/112 (80%)

Query: 17  QKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQA 76
           QKLVSQI++AMRKAGVAH+KSSK+MESHVFLKAKTR+EYLSLVARLIIHFRDI NKK+Q 
Sbjct: 1   QKLVSQIDEAMRKAGVAHTKSSKEMESHVFLKAKTREEYLSLVARLIIHFRDIFNKKNQT 60

Query: 77  SVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           + SDPMNALQ+LTG    G  G+GM  R  G  +G MG +  + Q M+L GQ
Sbjct: 61  AASDPMNALQNLTGNAVVGGQGMGMGVRPQGAQMGAMGGMTQIAQQMNLPGQ 112



>gi|28279616|gb|AAH45472.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Danio rerio]
          Length = 809

 Score =  171 bits (434), Expect = 2e-42
 Identities = 72/108 (66%), Positives = 84/108 (77%), Gaps = 7/108 (6%)

Query: 1   MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60
           MDV G ++DWRS AFRQK+V+QIE+AMRKAG  H+KSS +MESHVF KAKTR+EYLS+VA
Sbjct: 1   MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60

Query: 61  RLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRGPGQ 108
           RLIIHFRDIH KK+Q    DP+NALQ+L GG   G  G    PR PG 
Sbjct: 61  RLIIHFRDIH-KKAQGG-PDPINALQNLPGG-VPGVIG----PRPPGA 101



>gi|3037135|gb|AAC12944.1|   TPA inducible protein [Homo sapiens]
          Length = 579

 Score =  168 bits (427), Expect = 1e-41
 Identities = 101/102 (99%), Positives = 101/102 (99%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ
Sbjct: 1   MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           SLTGGPAAGAAGIGMPPRGPGQSLGGMGS GAMGQPMSLSGQ
Sbjct: 61  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSFGAMGQPMSLSGQ 102



>gi|21956190|gb|AAM83255.1|AF378334_1   ARC105 [Xenopus laevis]
          Length = 754

 Score =  168 bits (425), Expect = 2e-41
 Identities = 71/102 (69%), Positives = 80/102 (78%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAH+KSSKDMESHVFLKAKTR+EYLSLVARLIIHFRDI NKKSQA+ +DPMNALQ
Sbjct: 1   MRKAGVAHTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           +LTG    G  G+GM  R  G  +G M  +  M Q M+L GQ
Sbjct: 61  NLTGTAVVGGQGMGMGVRPQGAQMGAMSGMAQMAQQMNLPGQ 102



>gi|20891927|ref|XP_147188.1|   positive cofactor 2, multiprotein complex,
           glutamine/Q-rich-associated protein [Mus musculus]
          Length = 763

 Score =  164 bits (416), Expect = 2e-40
 Identities = 97/102 (95%), Positives = 98/102 (96%)

Query: 27  MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 86
           MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ
Sbjct: 1   MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60

Query: 87  SLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQ 128
           SLTGGP  GAAGIGMPPRGPGQSLGGMG LGAMGQP+ LSGQ
Sbjct: 61  SLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMGQPLPLSGQ 102



>gi|19920468|ref|NP_608528.1|   CG4184-PA [Drosophila melanogaster]
 gi|5052530|gb|AAD38595.1|AF145620_1   BcDNA.GH03922 [Drosophila melanogaster]
 gi|7296198|gb|AAF51490.1|   CG4184-PA [Drosophila melanogaster]
          Length = 749

 Score =  126 bits (316), Expect = 7e-29
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 9   DWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRD 68
           DW+S  FRQ ++S+I D +       +K++  ME+H+F K++T+DEYL LVA+L +H++D
Sbjct: 4   DWQSQKFRQNVISKIHDLLPPNAQDQTKNAGVMENHIFRKSRTKDEYLGLVAKLFMHYKD 63

Query: 69  IHNKK---------------------SQASVSDPMNALQSL 88
           +  K                       Q  + DP+NALQ+L
Sbjct: 64  MSRKSQQQQQQQQQQGGPPPNAEMGGGQNMMQDPLNALQNL 104



>gi|25148756|ref|NP_741152.1|   Putative nuclear protein, nematode specific [Caenorhabditis
           elegans]
 gi|21363104|sp|Q21955|YNL5_CAEEL   Hypothetical protein R12B2.5 in chromosome III
 gi|17976542|gb|AAA50743.3|   Hypothetical protein R12B2.5a [Caenorhabditis elegans]
          Length = 780

 Score = 41.5 bits (96), Expect = 0.002
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 17/117 (14%)

Query: 7   ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
           E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3   EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQ---------SLTGGPAAGAAGIGMPPRGPGQS 109
           +I     I+     A+V   +   Q         +L G   AG       P  P   
Sbjct: 63  VI---NAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116



>gi|25148761|ref|NP_741151.1|   Putative nuclear protein, nematode specific [Caenorhabditis
           elegans]
 gi|21450526|gb|AAM54164.1|U00066_6   Hypothetical protein R12B2.5b [Caenorhabditis elegans]
          Length = 777

 Score = 41.5 bits (96), Expect = 0.003
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 7   ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
           E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3   EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQ------SLTGGPAAGAAGIGMPPRGPGQS 109
           +I     I+     A+V   +   Q      +  G   AG       P  P   
Sbjct: 63  VI---NAINCNSKSAAVPSVLQPSQFHSPPCTTAGNTPAGGTPGYRAPVPPDPQ 113



>gi|7506661|pir||T16726   hypothetical protein R12B2.5 - Caenorhabditis elegans
          Length = 760

 Score = 40.7 bits (94), Expect = 0.004
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 7  ETDWRSTAFRQKLVSQIEDAMRKAGVAHSK-----SSKDMESHVFLKAKTRDEYLSLVAR 61
          E DW S  FR+ ++ ++E  + +             ++ +E +VF K  ++DEY+  +A+
Sbjct: 3  EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62

Query: 62 LI 63
          +I
Sbjct: 63 VI 64



>gi|17567279|ref|NP_509376.1|   KIX domain containing protein family member [Caenorhabditis
           elegans]
 gi|7499689|pir||T16139   hypothetical protein F22F1.3 - Caenorhabditis elegans
 gi|1118044|gb|AAA83283.1|   Hypothetical protein F22F1.3 [Caenorhabditis elegans]
          Length = 295

 Score = 38.0 bits (87), Expect = 0.029
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 16  RQKLVSQI--EDAMRKAGVAHSKS--------SKDMESHVFLKAKTRDEYLSLVARLIIH 65
           RQ ++++I  E   R    A + +        +  ME   F K +T+DEY + +AR+I+ 
Sbjct: 71  RQYMITKIVREAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELARIILS 130

Query: 66  FRDIHNKKSQASVSDP 81
            +     + + S  DP
Sbjct: 131 MQKHLQSRPKGSYEDP 146



>gi|16183127|gb|AAL13635.1|   GH18129p [Drosophila melanogaster]
          Length = 1007

 Score = 36.5 bits (83), Expect = 0.082
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSL-----TGGPAAGAAGIGMPPRGPGQSLGGMG 114
           LI+ F  +    +Q SV  P + LQ+L       GP  G  G    P  P  S GG+G
Sbjct: 45  LIVQFISMTPNTAQESVGTPGSDLQNLNQTPSNSGPIPGVVGRAPAPTTPTAS-GGVG 101



>gi|24654263|ref|NP_611162.2|   CG5859-PA [Drosophila melanogaster]
 gi|7302872|gb|AAF57945.1|   CG5859-PA [Drosophila melanogaster]
          Length = 1007

 Score = 36.1 bits (82), Expect = 0.097
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSL-----TGGPAAGAAGIGMPPRGPGQSLGGMG 114
           LI+ F  +    +Q SV  P + LQ+L       GP  G  G    P  P  S GG+G
Sbjct: 45  LIVQFISMTPNTAQESVGTPGSDLQNLNQTPSNSGPIPGVVGGAPAPTTPTAS-GGVG 101



>gi|7452615|pir||T13693   hypothetical protein EG0003.5 - fruit fly (Drosophila melanogaster)
 gi|3757560|emb|CAA21313.1|   1-evidence=predicted by
           content~1-method=genefinder;084~1-method_score=109.78~1-
           evidence_end~2-evidence=predicted by
           match~2-match_accession=AA817288~2-
           match_description=LD22518.5prime LD Drosophila
           melanogaster embryo pOT2 Drosophila melanogaster cDNA
           clone LD22518 5prime.~2-match_species=Drosophila
           melanogaster (fruit
           fly)~2-method=blastn;1.4.9~2-method_score=3045.00~2-
           evidence_end
          Length = 1007

 Score = 36.1 bits (82), Expect = 0.097
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 62  LIIHFRDIHNKKSQASVSDPMNALQSL-----TGGPAAGAAGIGMPPRGPGQSLGGMG 114
           LI+ F  +    +Q SV  P + LQ+L       GP  G  G    P  P  S GG+G
Sbjct: 45  LIVQFISMTPNTAQESVGTPGSDLQNLNQTPSNSGPIPGVVGGAPAPTTPTAS-GGVG 101



>gi|23001471|ref|ZP_00045376.1|   hypothetical protein [Magnetococcus sp. MC-1]
          Length = 487

 Score = 34.5 bits (78), Expect = 0.29
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 40  DMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGI 99
              S + LKAK  DE   ++A  + H +  H+ K     +D   AL     G A G A  
Sbjct: 109 VFHSGLLLKAKHYDEIAGVMAHELGHLKAGHHIK---MKADARTALAKQVVGAALGIAA- 164

Query: 100 GMPPRGPGQSLGGMGSLGAMGQPM 123
           GM   G G S   MG   A  Q M
Sbjct: 165 GMAGSGEGASALIMGGSAAARQGM 188






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jul 1, 2003  3:46 AM
  Number of letters in database: 469,658,079
  Number of sequences in database:  1,463,011
  
Lambda     K      H
   0.317    0.148    0.406 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,925,470
Number of Sequences: 1463011
Number of extensions: 5246355
Number of successful extensions: 25402
Number of sequences better than  1.0: 63
Number of HSP's better than  1.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 25184
Number of HSP's gapped (non-prelim): 216
length of query: 128
length of database: 469,658,079
effective HSP length: 104
effective length of query: 24
effective length of database: 317,504,935
effective search space: 7620118440
effective search space used: 7620118440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)