RID=1064242864-17487-1004757.BLASTQ3, BLASTP 2.2.6 [Apr-09-2003] 

RID: 1064242864-17487-1004757.BLASTQ3


Query= 
         (137 letters)



Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,527,037 sequences; 491,656,770 total letters



Results of PSI-Blast iteration 2


Skip to the first new sequence

Distribution of 12 Blast Hits on the Query Sequence

Legend:
New sequence mark - means that the alignment score was below the threshold on the previous iteration 
Checked mark - means that the alignment was checked on the previous iteration 



Hit list size 

Sequences with E-value BETTER than threshold

                                                                     Score    E
Sequences producing significant alignments:                           (bits) Value



 Checked mark gi|15230656|ref|NP_187904.1|  CREB-binding protein -related [Arab...   240   3e-63 

 Checked mark gi|7487910|pir||T01055  hypothetical protein YUP8H12R.38 - Arabid...   227   3e-59 

 Checked mark gi|18412221|ref|NP_565197.1|  p300/CBP acetyltransferase-related ...   225   7e-59 

 Checked mark gi|15219327|ref|NP_173115.1|  expressed protein [Arabidopsis thal...   212   6e-55 

 Checked mark gi|21105779|gb|AAM34787.1|AF512558_1  HAC5 [Arabidopsis thaliana]      202   1e-51 

 Checked mark gi|25518480|pir||D86302  hypothetical protein F17F16.9 - Arabidop...   165   1e-40 

 Checked mark gi|18394390|ref|NP_564004.1|  expressed protein [Arabidopsis thal...   149   8e-36 

 Checked mark gi|18405622|ref|NP_564706.1|  CREB-binding protein -related [Arab...    93   1e-18 

 Checked mark gi|8778322|gb|AAF79331.1|AC002304_24  F14J16.27 [Arabidopsis thal...    93   1e-18 

New sequence mark  gi|6056385|gb|AAF02849.1|AC009894_20  Unknown protein [Arabidopsi...    92   2e-18 

New sequence mark  gi|21105784|gb|AAM34789.1|AF512560_1  HAC4 [Arabidopsis thaliana]       87   4e-17 




Sequences with E-value WORSE than threshold




   gi|27374363|gb|AAO01103.1|  CG11008-PA [Drosophila littoralis]          33   0.93  




Alignments











>gi|15230656|ref|NP_187904.1|   CREB-binding protein -related [Arabidopsis thaliana]
 gi|15795129|dbj|BAB02507.1|   CREB-binding protein-like [Arabidopsis thaliana]
          Length = 1670

 Score =  240 bits (613), Expect = 3e-63
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   VSSQPNMVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRT 60
           VSSQPNMVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRT
Sbjct: 26  VSSQPNMVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRT 85

Query: 61  ATSKEDYLDFRSFDVRVESTLKQLLSQRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVD 120
           ATSKEDYLDFRSFDVRVESTLKQLLSQRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVD
Sbjct: 86  ATSKEDYLDFRSFDVRVESTLKQLLSQRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVD 145

Query: 121 TSKFNSSNNLSDATTET 137
           TSKFNSSNNLSDATTET
Sbjct: 146 TSKFNSSNNLSDATTET 162





>gi|7487910|pir||T01055   hypothetical protein YUP8H12R.38 - Arabidopsis thaliana
 gi|3152587|gb|AAC17068.1|   Similar to CREB-binding protein homolog gb|U88570 from D.
           melanogaster and contains similarity to
           callus-associated protein gb|U01961 from Nicotiana
           tabacum.  EST gb|W43427 comes from this gene.
           [Arabidopsis thaliana]
          Length = 1516

 Score =  227 bits (578), Expect = 3e-59
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 5   PNMVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSK 64
           P+ V+ +  D L LRQ M  R +  LQQ+QPS  D+ASKAK  +VA+RLE  +++ A +K
Sbjct: 38  PSRVSPVDNDILKLRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTK 97

Query: 65  EDYLDFRSFDVRVESTLK----QLLSQRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVD 120
           EDY++  + + R+ S +K       +QR AN SSSV TM+ TPG+ H  G          
Sbjct: 98  EDYVNPSTLEPRLASLIKGRQLNNYNQRHAN-SSSVGTMIPTPGLQHSGGNPNLMITSSG 156

Query: 121 TSKFNSSNNLSDATTET 137
            +    SNN++ +   T
Sbjct: 157 DATMAGSNNITTSAMNT 173





>gi|18412221|ref|NP_565197.1|   p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
 gi|12597461|gb|AAG60059.1|   p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
          Length = 1654

 Score =  225 bits (575), Expect = 7e-59
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 5   PNMVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSK 64
           P+ V+ +  D L LRQ M  R +  LQQ+QPS  D+ASKAK  +VA+RLE  +++ A +K
Sbjct: 38  PSRVSPVDNDILKLRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTK 97

Query: 65  EDYLDFRSFDVRVESTLK----QLLSQRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVD 120
           EDY++  + + R+ S +K       +QR AN SSSV TM+ TPG+ H  G          
Sbjct: 98  EDYVNPSTLEPRLASLIKGRQLNNYNQRHAN-SSSVGTMIPTPGLQHSGGNPNLMITSSG 156

Query: 121 TSKFNSSNNLSDATTET 137
            +    SNN++ +   T
Sbjct: 157 DATMAGSNNITTSAMNT 173





>gi|15219327|ref|NP_173115.1|   expressed protein [Arabidopsis thaliana]
          Length = 1706

 Score =  212 bits (541), Expect = 6e-55
 Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 6/133 (4%)

Query: 6   NMVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKE 65
           N+V  +  D + LRQ M    +  LQQRQPS  D ASKAK  +VA+RLE  +++ A +KE
Sbjct: 61  NIVGAMDHDIMKLRQYMQTLVFNMLQQRQPSPADAASKAKYMDVARRLEEGLFKMAVTKE 120

Query: 66  DYLDFRSFDVRVESTLK----QLLSQRRANPSSSVSTMVQTPGVSHGWGQSY-TATPMVD 120
           DY++  + + R+ S +K       +QR AN SSSV TM+ TPG+S   G      T  VD
Sbjct: 121 DYMNRSTLESRITSLIKGRQINNYNQRHAN-SSSVGTMIPTPGLSQTAGNPNLMVTSSVD 179

Query: 121 TSKFNSSNNLSDA 133
            +   ++N  S A
Sbjct: 180 ATIVGNTNITSTA 192





>gi|21105779|gb|AAM34787.1|AF512558_1   HAC5 [Arabidopsis thaliana]
          Length = 453

 Score =  202 bits (513), Expect = 1e-51
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 7   MVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKED 66
           MVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKED
Sbjct: 1   MVNGISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKED 60

Query: 67  YLDFRSFDVRVESTLKQLLSQRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVDTSKFNS 126
           YLDFRSFDVRVESTLKQLLSQRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVDTSKFNS
Sbjct: 61  YLDFRSFDVRVESTLKQLLSQRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVDTSKFNS 120

Query: 127 SNNLSDATTET 137
           SNNLSDATTET
Sbjct: 121 SNNLSDATTET 131





>gi|25518480|pir||D86302   hypothetical protein F17F16.9 - Arabidopsis thaliana
 gi|9954735|gb|AAG09088.1|AC026237_9   Hypothetical protein [Arabidopsis thaliana]
          Length = 238

 Score =  165 bits (417), Expect = 1e-40
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 11  ISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYLDF 70
           +  D   +R+ M +  +  L++R P   DDASK K  + AKRLE  +++ A +KE+YL+ 
Sbjct: 1   MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP 60

Query: 71  RSFDVRVESTLK----QLLSQRRANPSSSVSTMVQTPGVS 106
            + + R+ S +K         + A+ S+  +T+  TPGVS
Sbjct: 61  STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVS 100





>gi|18394390|ref|NP_564004.1|   expressed protein [Arabidopsis thaliana]
 gi|21618240|gb|AAM67290.1|   unknown [Arabidopsis thaliana]
          Length = 128

 Score =  149 bits (376), Expect = 8e-36
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 11  ISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYLDF 70
           +  D   +R+ M +  +  L++R P   DDASK K  + AKRLE  +++ A +KE+YL+ 
Sbjct: 1   MDNDVFQIRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNP 60

Query: 71  RSFDVRVESTLK----QLLSQRRANPSSSVSTMVQTPGVS 106
            + + R+ S +K         + A+ S+  +T+  TPGVS
Sbjct: 61  STLESRLTSLIKGRQLNKYKHQHADSSTLGTTITPTPGVS 100





>gi|18405622|ref|NP_564706.1|   CREB-binding protein -related [Arabidopsis thaliana]
          Length = 1456

 Score = 92.7 bits (229), Expect = 1e-18
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 26/109 (23%)

Query: 2   SSQPNMVNGISQD----TLLLRQEMLNRTYAWLQ--------------QRQPSKTDDASK 43
           SS P  V    QD        R  + NR YA ++              Q+Q  + DDA++
Sbjct: 18  SSAPITVISPQQDANNFIKKRRTALRNRIYAIVRHKQKQHQIFLDKKNQQQQQRVDDATQ 77

Query: 44  AKLSE--------VAKRLESAMWRTATSKEDYLDFRSFDVRVESTLKQL 84
             L E          + +E  + +++ S E+Y D R+FD RV + L+QL
Sbjct: 78  RALLEKQDQQCIAATRMIEEELLKSSRSFEEYFDLRTFDARVRTILQQL 126





>gi|8778322|gb|AAF79331.1|AC002304_24   F14J16.27 [Arabidopsis thaliana]
          Length = 1550

 Score = 92.7 bits (229), Expect = 1e-18
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 26/109 (23%)

Query: 2   SSQPNMVNGISQD----TLLLRQEMLNRTYAWLQ--------------QRQPSKTDDASK 43
           SS P  V    QD        R  + NR YA ++              Q+Q  + DDA++
Sbjct: 18  SSAPITVISPQQDANNFIKKRRTALRNRIYAIVRHKQKQHQIFLDKKNQQQQQRVDDATQ 77

Query: 44  AKLSE--------VAKRLESAMWRTATSKEDYLDFRSFDVRVESTLKQL 84
             L E          + +E  + +++ S E+Y D R+FD RV + L+QL
Sbjct: 78  RALLEKQDQQCIAATRMIEEELLKSSRSFEEYFDLRTFDARVRTILQQL 126





>gi|6056385|gb|AAF02849.1|AC009894_20   Unknown protein [Arabidopsis thaliana]
          Length = 1209

 Score = 91.9 bits (227), Expect = 2e-18
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 26/109 (23%)

Query: 2   SSQPNMVNGISQD----TLLLRQEMLNRTYAWLQ--------------QRQPSKTDDASK 43
           SS P  V    QD        R  + NR YA ++              Q+Q  + DDA++
Sbjct: 18  SSAPITVISPQQDANNFIKKRRTALRNRIYAIVRHKQKQHQIFLDKKNQQQQQRVDDATQ 77

Query: 44  AKLSE--------VAKRLESAMWRTATSKEDYLDFRSFDVRVESTLKQL 84
             L E          + +E  + +++ S E+Y D R+FD RV + L+QL
Sbjct: 78  RALLEKQDQQCIAATRMIEEELLKSSRSFEEYFDLRTFDARVRTILQQL 126





>gi|21105784|gb|AAM34789.1|AF512560_1   HAC4 [Arabidopsis thaliana]
          Length = 751

 Score = 87.3 bits (215), Expect = 4e-17
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 26/109 (23%)

Query: 2   SSQPNMVNGISQD----TLLLRQEMLNRTYAWLQ--------------QRQPSKTDDASK 43
           SS P  V    QD        R  + NR YA ++              Q+Q  + DDA++
Sbjct: 9   SSAPITVISPQQDANNFIKKRRTALRNRIYAIVRHKQKQHQIFLDKKNQQQQQRVDDATQ 68

Query: 44  AKLSE--------VAKRLESAMWRTATSKEDYLDFRSFDVRVESTLKQL 84
             L E          + +E  + +++ S E+Y D R+FD RV + L+QL
Sbjct: 69  RALLEKQDQQCIAATRMIEEELLKSSRSFEEYFDLRTFDARVRTILQQL 117





>gi|27374363|gb|AAO01103.1|   CG11008-PA [Drosophila littoralis]
          Length = 1207

 Score = 33.0 bits (74), Expect = 0.93
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 87  QRRANPSSSVSTMVQTPGVSHGWGQSYTATPMVDTSKFNSSNNLSDATTET 137
           Q++  PS+ +  ++  P +  G  +S   TP   T+K  S+     A+T +
Sbjct: 232 QQQKQPSTDIPAIIPVPAMGTGLARSLITTPSPSTTKICSTTISQVASTSS 282










  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Sep 22, 2003 12:23 AM
  Number of letters in database: 491,656,770
  Number of sequences in database:  1,527,037
  
Lambda     K      H
   0.308    0.119    0.327 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,263,902
Number of Sequences: 1527037
Number of extensions: 1196891
Number of successful extensions: 3419
Number of sequences better than  1.0: 1
Number of HSP's better than  1.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3417
Number of HSP's gapped (non-prelim): 1
length of query: 137
length of database: 491,656,770
effective HSP length: 113
effective length of query: 24
effective length of database: 319,101,589
effective search space: 7658438136
effective search space used: 7658438136
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 74 (33.0 bits)