BLASTP 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1057142285-022159-7884

Query= Ca_Gal11
         (138 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,463,011 sequences; 469,658,079 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs



Results of PSI-Blast iteration 3

Skip to the first new sequence

Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]    163   3e-40 

 gi|7493813|pir||T18235  transcription activator GAL11 homolog - y...   153   6e-37 

 gi|24461860|gb|AAN62347.1|AF506028_14  CTV.20 [Poncirus trifoliata]    145   8e-35 

 gi|22329593|ref|NP_173031.2|  expressed protein [Arabidopsis thal...   130   3e-30 

 gi|15218294|ref|NP_173030.1|  expressed protein [Arabidopsis thal...   125   1e-28 

 gi|28071313|dbj|BAC56002.1|  P0705A05.20 [Oryza sativa (japonica ...   120   4e-27 

 gi|27260984|dbj|BAC45101.1|  OJ1705_C03.23 [Oryza sativa (japonic...   114   2e-25 

 gi|25511635|pir||B86292  F7H2.12 protein - Arabidopsis thaliana >...   110   3e-24 

 gi|27260985|dbj|BAC45102.1|  OJ1705_C03.24 [Oryza sativa (japonic...    53   1e-06 

 gi|27260988|dbj|BAC45105.1|  OJ1705_C03.27 [Oryza sativa (japonic...    46   1e-04 

 gi|15226772|ref|NP_178842.1|  hypothetical protein [Arabidopsis t...    42   0.002 


Sequences with E-value WORSE than threshold


 gi|19074594|ref|NP_586100.1|  MADS domain [Encephalitozoon cunicu...    40   0.006 

 gi|21307831|gb|AAL54859.1|  CREB-binding protein [Aplysia califor...    36   0.10  

 gi|7511830|pir||T13828  CREB-binding protein homolog - fruit fly ...    35   0.32  

 gi|24640865|ref|NP_524642.2|  nejire CG15319-PB [Drosophila melan...    34   0.43  


Alignments








>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  163 bits (414), Expect = 3e-40
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 7   NASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDY 66
              WR     + RQ++V  I++TL      +    +  L K+A  FE+ +Y  ++S+ DY
Sbjct: 34  TGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDY 93

Query: 67  LRAIKMKVHQLRVQKQQIAANQGGQINPQQRQQ-----QQQQQISNSNSMNPVN-AQNVQ 120
           LR I +K+  +  + Q    N     NP    +       Q Q+ N     P+  + N  
Sbjct: 94  LRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPGSMQNQVHNQGQSLPIPLSANQS 153

Query: 121 FLRQQ 125
            +RQQ
Sbjct: 154 QVRQQ 158



>gi|7493813|pir||T18235   transcription activator GAL11 homolog - yeast (Candida albicans)
 gi|3859719|emb|CAA21993.1|   possible regulatory protein [Candida albicans]
          Length = 1145

 Score =  153 bits (386), Expect = 6e-37
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   GGGSNPNASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERS 60
           GGGSNPNASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERS
Sbjct: 14  GGGSNPNASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERS 73

Query: 61  ASKEDYLRAIKMKVHQLRVQKQQIAANQGGQINPQQRQQQQQQQISNSNSMNPVNAQNVQ 120
           ASKEDYLRAIKMKVHQLRVQKQQIAANQGGQINPQQRQQQQQQQISNSNSMNPVNAQNVQ
Sbjct: 74  ASKEDYLRAIKMKVHQLRVQKQQIAANQGGQINPQQRQQQQQQQISNSNSMNPVNAQNVQ 133

Query: 121 FL 122
           FL
Sbjct: 134 FL 135



>gi|24461860|gb|AAN62347.1|AF506028_14   CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score =  145 bits (367), Expect = 8e-35
 Identities = 21/80 (26%), Positives = 42/80 (52%)

Query: 8  ASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYL 67
          + WR   S + RQ++V  I++TL      +    +  L ++A  FE+ ++  + S+ DYL
Sbjct: 15 SDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYL 74

Query: 68 RAIKMKVHQLRVQKQQIAAN 87
          R I +K+  +  + Q  + +
Sbjct: 75 RKISLKMLSMESRSQNASGS 94



>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
          [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score =  130 bits (328), Expect = 3e-30
 Identities = 20/89 (22%), Positives = 39/89 (43%)

Query: 5  NPNASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKE 64
          +    WR  +    R ++V  I+ T  +            L K+A  FE+ ++  ++++ 
Sbjct: 2  DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQT 61

Query: 65 DYLRAIKMKVHQLRVQKQQIAANQGGQIN 93
          +YLR I MK+  +  + Q  A +     N
Sbjct: 62 EYLRQICMKMLNMETKSQNAAGSSSADDN 90




 Score = 85.4 bits (210), Expect = 2e-16
 Identities = 17/71 (23%), Positives = 37/71 (52%)

Query: 7   NASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDY 66
              WR     + RQK +  +++TL ++   +    +  L ++A   E+L++  + ++EDY
Sbjct: 109 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 168

Query: 67  LRAIKMKVHQL 77
           L  I +K+  +
Sbjct: 169 LGKISLKMRTM 179



>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  125 bits (314), Expect = 1e-28
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 7   NASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDY 66
              WR     + RQK+V  I+ TL +    +    +  L ++A  FE+ ++  + ++ DY
Sbjct: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDY 78

Query: 67  LRAIKMKVHQLRVQKQQIAANQGGQINPQQRQQQQQQQISNSNSMNPVN-AQNVQFLRQ 124
           LR I MK+  +  + Q  A +    I             +N   + P + + N     Q
Sbjct: 79  LRKISMKMLTMETKSQNAAGSSAA-IPAANNGTSIDSIPTNQGQLLPGSLSTNQSQAPQ 136



>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  120 bits (301), Expect = 4e-27
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 2   GGSNPNA--------SWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFE 53
           GG +PNA         WR+    E R ++V  I++TL +    +    +  L K+A  FE
Sbjct: 21  GGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFE 80

Query: 54  KLVYERSASKEDYLRAIKMKVHQLRVQKQQIAANQ---GGQINPQQRQQ 99
           + +Y  + S+ DYLR I +K+  +  + QQ   N      Q  P    +
Sbjct: 81  EKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSESR 129



>gi|27260984|dbj|BAC45101.1|   OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score =  114 bits (286), Expect = 2e-25
 Identities = 17/71 (23%), Positives = 31/71 (43%)

Query: 2  GGSNPNASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSA 61
          G       WR     + R +V + I+ +L     +  +  +  L K+A   E+ +Y+ + 
Sbjct: 5  GIIEEGVDWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAI 64

Query: 62 SKEDYLRAIKM 72
             DYLR I +
Sbjct: 65 DFGDYLRRISL 75



>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  110 bits (276), Expect = 3e-24
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 33/150 (22%)

Query: 7   NASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASK--- 63
              WR     + RQK+V  I+ TL +    +    +  L ++A  FE+ ++  + ++   
Sbjct: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQRFV 78

Query: 64  ----------------------------EDYLRAIKMKVHQLRVQKQQIAANQGGQINPQ 95
                                        DYLR I MK+  +  + Q  A +    I   
Sbjct: 79  RQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTMETKSQNAAGSSAA-IPAA 137

Query: 96  QRQQQQQQQISNSNSMNPVN-AQNVQFLRQ 124
                     +N   + P + + N     Q
Sbjct: 138 NNGTSIDSIPTNQGQLLPGSLSTNQSQAPQ 167



>gi|27260985|dbj|BAC45102.1|   OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)]
          Length = 87

 Score = 52.7 bits (125), Expect = 1e-06
 Identities = 6/37 (16%), Positives = 15/37 (40%)

Query: 27 INTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASK 63
          +  L     +  +  +  L K+A   E+ +Y+ +   
Sbjct: 39 MPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75



>gi|27260988|dbj|BAC45105.1|   OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)]
          Length = 194

 Score = 46.1 bits (108), Expect = 1e-04
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 2  GGSNPNASWRAMYSGEERQKVVQIII 27
          G  +    WR     + R +V   I+
Sbjct: 5  GIIDEGVDWRTRLGQDIRDRVTHDIL 30



>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score = 41.9 bits (97), Expect = 0.002
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 9  SWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKE 64
           WR+ +  E RQKV+  I+    E   ++  + +     +A  FE+  Y  +  K 
Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDKT 76



>gi|19074594|ref|NP_586100.1|   MADS domain [Encephalitozoon cuniculi]
 gi|19069236|emb|CAD25704.1|   MADS domain [Encephalitozoon cuniculi]
          Length = 776

 Score = 40.3 bits (93), Expect = 0.006
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 13  MYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRAIKM 72
           M S EER++++  +   L E +       VQ + + A   E+ +YE S SKE+YLR +  
Sbjct: 1   MLSQEERKQMILKLFVALKESNIFPGYTPVQ-IKEAAIRAEQRIYEESGSKEEYLRGMDE 59

Query: 73  KVHQLRVQKQQIAANQGGQINPQQRQQQQ 101
           +  ++     ++ +N+       +  Q+Q
Sbjct: 60  RFQRIE----RVVSNRSRADGRGKSTQEQ 84



>gi|21307831|gb|AAL54859.1|   CREB-binding protein [Aplysia californica]
          Length = 2245

 Score = 36.1 bits (82), Expect = 0.10
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 9   SWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKM------AQDFEKLVYERSAS 62
            W A  + + R  +V      L +     P+    R S+M      A+  E  +YE + +
Sbjct: 504 DWHAQVTQDLRNHLVHK----LVQAIFPTPDQATLRDSRMKNLVAYARKVEGDMYESANN 559

Query: 63  KEDYLRAIKMKVHQLRVQKQQIAANQGG-QINPQQRQQQQQQQISNSNSMNPVNAQNVQF 121
           +  Y   +  K+++++ + ++    +   Q  P  +    Q QI  +    P N Q   F
Sbjct: 560 RGQYYHLLAEKIYKIQKELEEKRIQRMKVQNAPNAQVPGMQGQIHPNAQNGPNNVQGNAF 619

Query: 122 LRQ 124
             +
Sbjct: 620 FNE 622



>gi|7511830|pir||T13828   CREB-binding protein homolog - fruit fly (Drosophila melanogaster)
 gi|1916930|gb|AAB53050.1|   CREB-binding protein homolog [Drosophila melanogaster]
          Length = 3190

 Score = 34.6 bits (78), Expect = 0.32
 Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 9    SWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQR-----LSKMAQDFEKLVYERSASK 63
             WR   + + R  +V  ++     +  ++    +Q      L   A+  EK +YE + S+
Sbjct: 942  DWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMYEMAKSR 998

Query: 64   EDYLRAIKMKVHQLR 78
             +Y   +  K+++++
Sbjct: 999  SEYYHLLAEKIYKIQ 1013



>gi|24640865|ref|NP_524642.2|   nejire CG15319-PB [Drosophila melanogaster]
 gi|22833041|gb|AAF46516.2|   CG15319-PB [Drosophila melanogaster]
          Length = 3276

 Score = 33.8 bits (76), Expect = 0.43
 Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 9    SWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQR-----LSKMAQDFEKLVYERSASK 63
             WR   + + R  +V  ++     +  ++    +Q      L   A+  EK +YE + S+
Sbjct: 942  DWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMYEMAKSR 998

Query: 64   EDYLRAIKMKVHQLR 78
             +Y   +  K+++++
Sbjct: 999  SEYYHLLAEKIYKIQ 1013






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Jul 1, 2003  3:46 AM
  Number of letters in database: 469,658,079
  Number of sequences in database:  1,463,011
  
Lambda     K      H
   0.318    0.146    0.381 

Gapped
Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,435,899
Number of Sequences: 1463011
Number of extensions: 4869721
Number of successful extensions: 98193
Number of sequences better than  1.0: 100
Number of HSP's better than  1.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 492
Number of HSP's that attempted gapping in prelim test: 49306
Number of HSP's gapped (non-prelim): 18260
length of query: 138
length of database: 469,658,079
effective HSP length: 114
effective length of query: 24
effective length of database: 302,874,825
effective search space: 7268995800
effective search space used: 7268995800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)