################################### Hits in DrPCAP with E < 0.01 ######SEQUENCE MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA RLIIHFRDIHKKAQGGPDPINALQNLPGGVPGVIGPRPPGAQMGGMGQMSMGPHAMQGVA GGQQGAGAAGPMQQMIQQQQQQ ######COMMAND blastpgp -i DrPCAP -F T -j 10 -a 4 -h 0.005 -e 10 -d nr ######HIT_SUMMARY HSP__Pos in Q_________________Subject__________________from species_______Pos in S___E-value___ 1 1 .. 86 AAH45472.1| Similar to PC2 (positive cof Danio rerio 1 .. 86 E= 2.0e-42 1 1 .. 86 NP_056973.2| positive cofactor 2, glutam Homo sapiens 1 .. 88 E= 5.0e-28 1 1 .. 86 AAK58423.1|AF328769_1 PC2-glutamine-rich Homo sapiens 1 .. 88 E= 5.0e-28 1 1 .. 86 BAC03446.1| FLJ00386 protein [Homo sapie Homo sapiens 24 .. 111 E= 6.0e-28 1 1 .. 86 Q96RN5|PCAP_HUMAN Positive cofactor 2 gl -------- 1 .. 88 E= 7.0e-28 1 1 .. 86 Q924H2|PCAP_MOUSE Positive cofactor 2 gl -------- 1 .. 88 E= 7.0e-27 1 1 .. 86 NP_291087.1| positive cofactor 2, glutam Mus musculus 1 .. 88 E= 2.0e-26 1 17 .. 86 AAH46263.1| Similar to PC2 (positive cof Xenopus laevis 1 .. 72 E= 7.0e-22 1 27 .. 86 AAM83255.1|AF378334_1 ARC105 [Xenopus la Xenopus laevis 1 .. 62 E= 1.0e-17 1 27 .. 86 XP_147188.1| positive cofactor 2, multip Mus musculus 1 .. 62 E= 8.0e-17 1 27 .. 86 AAC12944.1| TPA inducible protein [Homo Homo sapiens 1 .. 62 E= 5.0e-16 1 9 .. 86 NP_608528.1| CG4184-PA [Drosophila melan Drosophila mela 4 .. 104 E= 5.0e-12 1 7 .. 84 NP_741152.1| Putative nuclear protein, n Caenorhabditis 3 .. 84 E= 7.0e-05 1 7 .. 84 T16726 hypothetical protein R12B2.5 - Ca Caenorhabditis 3 .. 84 E= 7.0e-05 1 7 .. 84 NP_741151.1| Putative nuclear protein, n Caenorhabditis 3 .. 84 E= 7.0e-05 ***** 15 Number of hits for DrPCAP below with E-value < 0.01 : 15 ######RAW OUTPUT BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrPCAP (142 letters) Database: /local/data/sequences/fasta/nr 1,459,938 sequences; 468,778,868 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein... 171 2e-42 ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associate... 123 5e-28 gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 123 5e-28 dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 123 6e-28 sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 122 7e-28 sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associ... 119 7e-27 ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associate... 118 2e-26 gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein... 102 7e-22 gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] 89 1e-17 ref|XP_147188.1| positive cofactor 2, multiprotein complex, glut... 86 8e-17 gb|AAC12944.1| TPA inducible protein [Homo sapiens] 84 5e-16 ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] >gi|5052530... 70 5e-12 gb|AAB50532.1| ORF2280 gene homolog 35 0.15 ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 35 0.19 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 35 0.19 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 35 0.19 ref|NP_446121.1| adaptor protein with pleckstrin homology and sr... 34 0.42 pir||JC7278 adaptor protein containing PH and SH2 domains - mouse 33 0.63 ref|NP_061295.1| adaptor protein with pleckstrin homology and sr... 33 0.64 gb|AAB50326.1| ORF2280 gene homolog 33 1.1 gb|AAB50542.1| ORF2280 gene homolog 33 1.1 gb|AAB50317.1| ORF2280 gene homolog 33 1.1 gb|AAB50325.1| ORF2280 gene homolog 33 1.1 gb|AAB50322.1| ORF2280 gene homolog 33 1.1 ref|NP_066189.1| adaptor protein with pleckstrin homology and sr... 32 1.4 gb|AAB50318.1| ORF2280 gene homolog >gi|1906405|gb|AAB50319.1| O... 32 1.6 gb|AAB50314.1| ORF2280 gene homolog >gi|1906399|gb|AAB50316.1| O... 32 1.7 gb|AAB50328.1| ORF2280 gene homolog 32 1.8 gb|AAB50333.1| ORF2280 gene homolog 32 1.9 gb|AAB50330.1| ORF2280 gene homolog 32 1.9 gb|AAB50327.1| ORF2280 gene homolog 32 1.9 gb|AAB50538.1| ORF2280 gene homolog 32 2.3 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 31 2.8 ref|NP_783294.1| ycf2 protein [Atropa belladonna] >gi|20068395|e... 31 2.9 ref|NP_783274.1| ycf2 protein [Atropa belladonna] >gi|20068374|e... 31 2.9 ref|NP_054542.1| Ycf2 [Nicotiana tabacum] >gi|11466033|ref|NP_05... 31 3.0 ref|NP_084736.1| Ycf2 protein [Oenothera elata subsp. hookeri] >... 31 3.1 ref|NP_767157.1| blr0517 [Bradyrhizobium japonicum] >gi|27348765... 31 3.8 ref|NP_051101.1| ycf2 [Arabidopsis thaliana] >gi|7525097|ref|NP_... 31 4.1 pir||A05204 hypothetical protein 581 - common tobacco chloroplas... 31 4.2 gb|AAK30573.1| ycf2 [Brassica napus] 30 5.8 ref|NP_437914.1| putative transcriptional regulator, LacI family... 30 6.1 >gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Danio rerio] Length = 809 Score = 171 bits (434), Expect = 2e-42 Identities = 86/86 (100%), Positives = 86/86 (100%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA Sbjct: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 Query: 61 RLIIHFRDIHKKAQGGPDPINALQNL 86 RLIIHFRDIHKKAQGGPDPINALQNL Sbjct: 61 RLIIHFRDIHKKAQGGPDPINALQNL 86 >ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA inducible protein; TPA inducible gene-1; PC2-glutamine-rich-associated protein; trinucleotide repeat containing 7 [Homo sapiens] gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Homo sapiens] Length = 748 Score = 123 bits (308), Expect = 5e-28 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens] Length = 746 Score = 123 bits (308), Expect = 5e-28 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] Length = 811 Score = 123 bits (308), Expect = 6e-28 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 24 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 83 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 84 RLIIHFRDIHNKKSQASVSDPMNALQSL 111 >sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a) Length = 788 Score = 122 bits (307), Expect = 7e-28 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 119 bits (299), Expect = 7e-27 Identities = 63/88 (71%), Positives = 75/88 (84%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFR K+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associated protein [Mus musculus] gb|AAK58424.1|AF328770_1 PC2-glutamine-rich-associated protein [Mus musculus] Length = 667 Score = 118 bits (295), Expect = 2e-26 Identities = 63/88 (71%), Positives = 75/88 (84%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFR K+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Xenopus laevis] Length = 846 Score = 102 bits (255), Expect = 7e-22 Identities = 56/72 (77%), Positives = 62/72 (85%), Gaps = 2/72 (2%) Query: 17 QKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDI-HKKAQ- 74 QK+V+QI+EAMRKAG HTKSS EMESHVF KAKTREEYLS+VARLIIHFRDI +KK Q Sbjct: 1 QKLVSQIDEAMRKAGVAHTKSSKEMESHVFLKAKTREEYLSLVARLIIHFRDIFNKKNQT 60 Query: 75 GGPDPINALQNL 86 DP+NALQNL Sbjct: 61 AASDPMNALQNL 72 >gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] Length = 754 Score = 89.0 bits (219), Expect = 1e-17 Identities = 48/62 (77%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDI-HKKAQGGP-DPINALQ 84 MRKAG HTKSS +MESHVF KAKTREEYLS+VARLIIHFRDI +KK+Q DP+NALQ Sbjct: 1 MRKAGVAHTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDPMNALQ 60 Query: 85 NL 86 NL Sbjct: 61 NL 62 >ref|XP_147188.1| positive cofactor 2, multiprotein complex, glutamine/Q-rich-associated protein [Mus musculus] Length = 763 Score = 86.3 bits (212), Expect = 8e-17 Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIH-KKAQGG-PDPINALQ 84 MRKAG H+KSS +MESHVF KAKTR+EYLS+VARLIIHFRDIH KK+Q DP+NALQ Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 NL 86 +L Sbjct: 61 SL 62 >gb|AAC12944.1| TPA inducible protein [Homo sapiens] Length = 579 Score = 83.6 bits (205), Expect = 5e-16 Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIH-KKAQGG-PDPINALQ 84 MRKAG H+KSS +MESHVF KAKTR+EYLS+VARLIIHFRDIH KK+Q DP+NALQ Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 NL 86 +L Sbjct: 61 SL 62 >ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] gb|AAD38595.1|AF145620_1 BcDNA.GH03922 [Drosophila melanogaster] gb|AAF51490.1| CG4184-PA [Drosophila melanogaster] Length = 749 Score = 70.1 bits (170), Expect = 5e-12 Identities = 37/101 (36%), Positives = 60/101 (58%), Gaps = 23/101 (22%) Query: 9 DWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRD 68 DW+S FRQ V+++I + + TK++ ME+H+F K++T++EYL +VA+L +H++D Sbjct: 4 DWQSQKFRQNVISKIHDLLPPNAQDQTKNAGVMENHIFRKSRTKDEYLGLVAKLFMHYKD 63 Query: 69 IHKKA---------QGGP--------------DPINALQNL 86 + +K+ QGGP DP+NALQNL Sbjct: 64 MSRKSQQQQQQQQQQGGPPPNAEMGGGQNMMQDPLNALQNL 104 >gb|AAB50532.1| ORF2280 gene homolog Length = 182 Score = 35.4 bits (80), Expect = 0.15 Identities = 15/40 (37%), Positives = 26/40 (64%), Gaps = 2/40 (5%) Query: 13 PAFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 PAFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 79 PAFREKIPIEVESFFKEQGAGSTIQSKDIEHVSHLFSRTK 118 >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LI 63 +I Sbjct: 63 VI 64 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LI 63 +I Sbjct: 63 VI 64 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LI 63 +I Sbjct: 63 VI 64 >ref|NP_446121.1| adaptor protein with pleckstrin homology and src homology 2 domains [Rattus norvegicus] gb|AAC64408.1| APS protein [Rattus norvegicus] Length = 621 Score = 33.9 bits (76), Expect = 0.42 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%) Query: 3 VPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEY--LSMVA 60 V G +D P + V + A++ A GH++SS ++ +HV TKA+ R+ + +M Sbjct: 75 VLGTAADTMEP---EPAVTSVTSALKTATYGHSRSSEDVSAHVATKARVRKGFSLRNMSL 131 Query: 61 RLIIHFRDI-HKKAQGGPD 78 ++ RD+ H++A P+ Sbjct: 132 CVVDGVRDLWHRRASPEPE 150 >pir||JC7278 adaptor protein containing PH and SH2 domains - mouse Length = 621 Score = 33.5 bits (75), Expect = 0.63 Identities = 22/79 (27%), Positives = 42/79 (52%), Gaps = 6/79 (7%) Query: 3 VPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYL--SMVA 60 V G +D P + V + A++ A GH++SS ++ +H TKA+ R+ + +M Sbjct: 75 VLGSAADTMEP---EPAVTSVTSALKTATYGHSRSSEDVSAHAATKARVRKGFWLRNMSL 131 Query: 61 RLIIHFRDI-HKKAQGGPD 78 ++ RD+ H+++ PD Sbjct: 132 CVVDGVRDLWHRRSSPEPD 150 >ref|NP_061295.1| adaptor protein with pleckstrin homology and src; insulin receptor substrate 5; adaptor protein with pleckstrin homology and src homology 2 domains [Mus musculus] gb|AAF37891.1|AF234838_1 APS protein [Mus musculus] Length = 621 Score = 33.5 bits (75), Expect = 0.64 Identities = 22/79 (27%), Positives = 42/79 (52%), Gaps = 6/79 (7%) Query: 3 VPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYL--SMVA 60 V G +D P + V + A++ A GH++SS ++ +H TKA+ R+ + +M Sbjct: 75 VLGSAADTMEP---EPAVTSVTSALKTATYGHSRSSEDVSAHAATKARVRKGFWLRNMSL 131 Query: 61 RLIIHFRDI-HKKAQGGPD 78 ++ RD+ H+++ PD Sbjct: 132 CVVDGVRDLWHRRSSPEPD 150 >gb|AAB50326.1| ORF2280 gene homolog Length = 184 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E +++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFLKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50542.1| ORF2280 gene homolog Length = 182 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E +++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFLKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50317.1| ORF2280 gene homolog Length = 182 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E +++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFLKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50325.1| ORF2280 gene homolog Length = 182 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E +++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFLKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50322.1| ORF2280 gene homolog Length = 182 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E +++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFLKQQGAGSTIQSNDIEHVSHLFSRNK 118 >ref|NP_066189.1| adaptor protein with pleckstrin homology and src homology 2 domains [Homo sapiens] dbj|BAA22514.1| APS [Homo sapiens] Length = 632 Score = 32.3 bits (72), Expect = 1.4 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 26 AMRKAGTGHTKSSTEMESHVFTKAKTREEY--LSMVARLIIHFRDI-HKKAQGGPD 78 A++ A GH++SS ++ +H TKA+ R+ + +M ++ RD+ H++A PD Sbjct: 106 ALKAASYGHSRSSEDVSTHAATKARVRKGFSLRNMSLCVVDGVRDMWHRRASPEPD 161 >gb|AAB50318.1| ORF2280 gene homolog gb|AAB50319.1| ORF2280 gene homolog gb|AAB50320.1| ORF2280 gene homolog Length = 182 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E +++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFVKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50314.1| ORF2280 gene homolog gb|AAB50316.1| ORF2280 gene homolog Length = 182 Score = 32.0 bits (71), Expect = 1.7 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E +++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFVKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50328.1| ORF2280 gene homolog Length = 182 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/39 (35%), Positives = 26/39 (65%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E +++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFVKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50333.1| ORF2280 gene homolog Length = 182 Score = 32.0 bits (71), Expect = 1.9 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50330.1| ORF2280 gene homolog Length = 182 Score = 32.0 bits (71), Expect = 1.9 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAB50327.1| ORF2280 gene homolog Length = 179 Score = 32.0 bits (71), Expect = 1.9 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 77 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 115 >gb|AAB50538.1| ORF2280 gene homolog Length = 182 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 80 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 118 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 11/83 (13%) Query: 8 SDWRSPA---FRQKVVAQIEEAMRK-------AGTGHTKS-STEMESHVFTKAKTREEYL 56 SDWR+P RQ++V +I + +++ G K + E +FT A ++ +YL Sbjct: 15 SDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYL 74 Query: 57 SMVARLIIHFRDIHKKAQGGPDP 79 ++ ++ + A G +P Sbjct: 75 RKISLKMLSMESRSQNASGSNEP 97 >ref|NP_783294.1| ycf2 protein [Atropa belladonna] emb|CAC88108.1| ycf2 protein [Atropa belladonna] Length = 2291 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 270 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 308 >ref|NP_783274.1| ycf2 protein [Atropa belladonna] emb|CAC88087.1| ycf2 protein [Atropa belladonna] Length = 2291 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 270 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 308 >ref|NP_054542.1| Ycf2 [Nicotiana tabacum] ref|NP_054575.1| Ycf2 [Nicotiana tabacum] sp|P09976|YCF2_TOBAC Hypothetical 267 kDa protein ycf2 (ORF 2280) emb|CAA77427.1| Ycf2 protein [Nicotiana tabacum] emb|CAA77438.1| Ycf2 protein [Nicotiana tabacum] Length = 2280 Score = 31.2 bits (69), Expect = 3.0 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 270 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 308 >ref|NP_084736.1| Ycf2 protein [Oenothera elata subsp. hookeri] ref|NP_084773.1| Ycf2 protein [Oenothera elata subsp. hookeri] sp|Q9MEF2|YCF2_OENHO Hypothetical 266.3 kDa protein ycf2 emb|CAB67203.1| Ycf2 protein [Oenothera elata subsp. hookeri] emb|CAB67242.1| Ycf2 protein [Oenothera elata subsp. hookeri] Length = 2280 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 246 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 284 >ref|NP_767157.1| blr0517 [Bradyrhizobium japonicum] dbj|BAC45782.1| blr0517 [Bradyrhizobium japonicum USDA 110] Length = 652 Score = 30.8 bits (68), Expect = 3.8 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 4 PGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLI 63 PG + DW V +I EA+ K G H K E E E+ ARL+ Sbjct: 505 PGAEDDW--------TVDEIGEALHKVGLDHLKEKIEEEGPWDQTLSGGEKQRLAFARLL 556 Query: 64 IHFRDI 69 +H DI Sbjct: 557 LHNPDI 562 >ref|NP_051101.1| ycf2 [Arabidopsis thaliana] ref|NP_051121.1| ycf2 [Arabidopsis thaliana] sp|P56786|YCF2_ARATH Hypothetical 269.6 kDa protein ycf2 dbj|BAA84428.1| ycf2 [Arabidopsis thaliana] dbj|BAA84449.1| ycf2 [Arabidopsis thaliana] Length = 2294 Score = 30.8 bits (68), Expect = 4.1 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 270 AFREKIPIEVEGFCKQQGAGSTIQSNDIEHVSHLFSRNK 308 >pir||A05204 hypothetical protein 581 - common tobacco chloroplast prf||1211235BY ORF 581 Length = 581 Score = 30.8 bits (68), Expect = 4.2 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 270 AFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNK 308 >gb|AAK30573.1| ycf2 [Brassica napus] Length = 462 Score = 30.0 bits (66), Expect = 5.8 Identities = 14/39 (35%), Positives = 25/39 (63%), Gaps = 2/39 (5%) Query: 14 AFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 AFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 247 AFREKIPIEVEGFCQQQGAGSTIQSNDIEHVSHLFSRNK 285 >ref|NP_437914.1| putative transcriptional regulator, LacI family protein [Sinorhizobium meliloti] pir||F96013 probable transcription regulator, LacI family protein [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49774.1| putative transcriptional regulator, LacI family protein [Sinorhizobium meliloti] Length = 334 Score = 30.0 bits (66), Expect = 6.1 Identities = 15/48 (31%), Positives = 21/48 (43%) Query: 15 FRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARL 62 F+Q+ + E AG G + S + +H K RE L V RL Sbjct: 5 FKQQTTVTLAEVAEAAGVGESTVSRVLRNHGSFSGKARERVLDAVERL 52 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein... 174 2e-43 dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 164 2e-40 sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 164 2e-40 ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associate... 164 2e-40 gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 164 2e-40 ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associate... 157 3e-38 sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associ... 157 3e-38 gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein... 130 5e-30 ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] >gi|5052530... 128 1e-29 gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] 113 4e-25 ref|XP_147188.1| positive cofactor 2, multiprotein complex, glut... 113 4e-25 gb|AAC12944.1| TPA inducible protein [Homo sapiens] 113 4e-25 Sequences not found previously or not previously below threshold: ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 46 7e-05 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 46 7e-05 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 46 7e-05 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 33 0.56 ref|ZP_00001618.1| hypothetical protein [Ferroplasma acidarmanus] 33 0.78 ref|XP_219130.1| similar to hypothetical protein FLJ13373 [Homo ... 32 1.7 gb|AAB50532.1| ORF2280 gene homolog 32 1.9 ref|NP_446121.1| adaptor protein with pleckstrin homology and sr... 32 2.0 ref|NP_722447.1| putative SpoJ [Streptococcus mutans UA159] >gi|... 31 2.7 ref|NP_437914.1| putative transcriptional regulator, LacI family... 31 2.7 pir||JC7278 adaptor protein containing PH and SH2 domains - mouse 31 3.0 ref|NP_061295.1| adaptor protein with pleckstrin homology and sr... 31 3.0 ref|NP_509376.1| KIX domain containing protein family member [Ca... 31 3.1 ref|NP_014040.1| Protein required for nuclear import with some s... 31 4.7 emb|CAA90827.1| Nip1p [Saccharomyces cerevisiae] 31 4.7 pir||A46417 NIP1 protein - yeast (Saccharomyces cerevisiae) 31 4.7 ref|NP_066189.1| adaptor protein with pleckstrin homology and sr... 30 6.4 ref|NP_726345.2| CG30182-PA [Drosophila melanogaster] >gi|283806... 30 9.0 >gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Danio rerio] Length = 809 Score = 174 bits (441), Expect = 2e-43 Identities = 86/86 (100%), Positives = 86/86 (100%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA Sbjct: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 Query: 61 RLIIHFRDIHKKAQGGPDPINALQNL 86 RLIIHFRDIHKKAQGGPDPINALQNL Sbjct: 61 RLIIHFRDIHKKAQGGPDPINALQNL 86 >dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] Length = 811 Score = 164 bits (416), Expect = 2e-40 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 24 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 83 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 84 RLIIHFRDIHNKKSQASVSDPMNALQSL 111 >sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a) Length = 788 Score = 164 bits (416), Expect = 2e-40 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA inducible protein; TPA inducible gene-1; PC2-glutamine-rich-associated protein; trinucleotide repeat containing 7 [Homo sapiens] gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Homo sapiens] Length = 748 Score = 164 bits (416), Expect = 2e-40 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens] Length = 746 Score = 164 bits (416), Expect = 2e-40 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associated protein [Mus musculus] gb|AAK58424.1|AF328770_1 PC2-glutamine-rich-associated protein [Mus musculus] Length = 667 Score = 157 bits (397), Expect = 3e-38 Identities = 63/88 (71%), Positives = 75/88 (84%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFR K+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 157 bits (397), Expect = 3e-38 Identities = 63/88 (71%), Positives = 75/88 (84%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFR K+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQGG-PDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Xenopus laevis] Length = 846 Score = 130 bits (326), Expect = 5e-30 Identities = 56/72 (77%), Positives = 62/72 (85%), Gaps = 2/72 (2%) Query: 17 QKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDI-HKKAQ- 74 QK+V+QI+EAMRKAG HTKSS EMESHVF KAKTREEYLS+VARLIIHFRDI +KK Q Sbjct: 1 QKLVSQIDEAMRKAGVAHTKSSKEMESHVFLKAKTREEYLSLVARLIIHFRDIFNKKNQT 60 Query: 75 GGPDPINALQNL 86 DP+NALQNL Sbjct: 61 AASDPMNALQNL 72 >ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] gb|AAD38595.1|AF145620_1 BcDNA.GH03922 [Drosophila melanogaster] gb|AAF51490.1| CG4184-PA [Drosophila melanogaster] Length = 749 Score = 128 bits (322), Expect = 1e-29 Identities = 37/101 (36%), Positives = 60/101 (58%), Gaps = 23/101 (22%) Query: 9 DWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRD 68 DW+S FRQ V+++I + + TK++ ME+H+F K++T++EYL +VA+L +H++D Sbjct: 4 DWQSQKFRQNVISKIHDLLPPNAQDQTKNAGVMENHIFRKSRTKDEYLGLVAKLFMHYKD 63 Query: 69 IHKKA---------QGGP--------------DPINALQNL 86 + +K+ QGGP DP+NALQNL Sbjct: 64 MSRKSQQQQQQQQQQGGPPPNAEMGGGQNMMQDPLNALQNL 104 >gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] Length = 754 Score = 113 bits (284), Expect = 4e-25 Identities = 48/62 (77%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDI-HKKAQGGP-DPINALQ 84 MRKAG HTKSS +MESHVF KAKTREEYLS+VARLIIHFRDI +KK+Q DP+NALQ Sbjct: 1 MRKAGVAHTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDPMNALQ 60 Query: 85 NL 86 NL Sbjct: 61 NL 62 >ref|XP_147188.1| positive cofactor 2, multiprotein complex, glutamine/Q-rich-associated protein [Mus musculus] Length = 763 Score = 113 bits (284), Expect = 4e-25 Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIH-KKAQGG-PDPINALQ 84 MRKAG H+KSS +MESHVF KAKTR+EYLS+VARLIIHFRDIH KK+Q DP+NALQ Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 NL 86 +L Sbjct: 61 SL 62 >gb|AAC12944.1| TPA inducible protein [Homo sapiens] Length = 579 Score = 113 bits (284), Expect = 4e-25 Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIH-KKAQGG-PDPINALQ 84 MRKAG H+KSS +MESHVF KAKTR+EYLS+VARLIIHFRDIH KK+Q DP+NALQ Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 NL 86 +L Sbjct: 61 SL 62 >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 46.5 bits (109), Expect = 7e-05 Identities = 19/83 (22%), Positives = 42/83 (49%), Gaps = 6/83 (7%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LIIHFRDIHKKAQGGPDPINALQ 84 +I+ + + K+ P + Q Sbjct: 63 -VINAINCNSKSAAVPSVLQPSQ 84 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 46.5 bits (109), Expect = 7e-05 Identities = 19/83 (22%), Positives = 42/83 (49%), Gaps = 6/83 (7%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LIIHFRDIHKKAQGGPDPINALQ 84 +I+ + + K+ P + Q Sbjct: 63 -VINAINCNSKSAAVPSVLQPSQ 84 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 46.5 bits (109), Expect = 7e-05 Identities = 19/83 (22%), Positives = 42/83 (49%), Gaps = 6/83 (7%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LIIHFRDIHKKAQGGPDPINALQ 84 +I+ + + K+ P + Q Sbjct: 63 -VINAINCNSKSAAVPSVLQPSQ 84 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 33.4 bits (75), Expect = 0.56 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 11/83 (13%) Query: 8 SDWRSP---AFRQKVVAQIEEAMR-------KAGTGHTKSSTE-MESHVFTKAKTREEYL 56 SDWR+P RQ++V +I + ++ G K + E +FT A ++ +YL Sbjct: 15 SDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYL 74 Query: 57 SMVARLIIHFRDIHKKAQGGPDP 79 ++ ++ + A G +P Sbjct: 75 RKISLKMLSMESRSQNASGSNEP 97 >ref|ZP_00001618.1| hypothetical protein [Ferroplasma acidarmanus] Length = 1156 Score = 33.0 bits (74), Expect = 0.78 Identities = 16/70 (22%), Positives = 36/70 (50%), Gaps = 4/70 (5%) Query: 16 RQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIHKKAQG 75 R+++ +++E + + +ME + + K+RE Y S +A++ F+ +K+Q Sbjct: 765 RKELFKKLKELAPEN----VEIEKQMEEELGNEMKSRENYSSKLAQIETEFKHFTEKSQE 820 Query: 76 GPDPINALQN 85 + I L+N Sbjct: 821 LEEKITGLEN 830 >ref|XP_219130.1| similar to hypothetical protein FLJ13373 [Homo sapiens] [Rattus norvegicus] Length = 1889 Score = 31.8 bits (71), Expect = 1.7 Identities = 20/79 (25%), Positives = 34/79 (42%), Gaps = 9/79 (11%) Query: 6 PDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIH 65 D+ S F + ++ IEE KS+ E + FT + L + R Sbjct: 1459 QQCDYNSSYFHE-ILRIIEE--------EVKSAHTEERYTFTSKYIIDLSLCLFQRASKS 1509 Query: 66 FRDIHKKAQGGPDPINALQ 84 F+++HK + DP+N L+ Sbjct: 1510 FKEMHKAFKSANDPVNYLE 1528 >gb|AAB50532.1| ORF2280 gene homolog Length = 182 Score = 31.8 bits (71), Expect = 1.9 Identities = 15/40 (37%), Positives = 26/40 (64%), Gaps = 2/40 (5%) Query: 13 PAFRQKVVAQIEEAMRKAGTGHTKSSTEME--SHVFTKAK 50 PAFR+K+ ++E ++ G G T S ++E SH+F++ K Sbjct: 79 PAFREKIPIEVESFFKEQGAGSTIQSKDIEHVSHLFSRTK 118 >ref|NP_446121.1| adaptor protein with pleckstrin homology and src homology 2 domains [Rattus norvegicus] gb|AAC64408.1| APS protein [Rattus norvegicus] Length = 621 Score = 31.8 bits (71), Expect = 2.0 Identities = 13/36 (36%), Positives = 24/36 (66%) Query: 20 VAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEY 55 V + A++ A GH++SS ++ +HV TKA+ R+ + Sbjct: 89 VTSVTSALKTATYGHSRSSEDVSAHVATKARVRKGF 124 >ref|NP_722447.1| putative SpoJ [Streptococcus mutans UA159] gb|AAN59753.1|AE015037_4 putative SpoJ [Streptococcus mutans UA159] Length = 257 Score = 31.5 bits (70), Expect = 2.7 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 6 PDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIH 65 D ++ Q V QIE A++ K+S + +F K +E S+ ++IH Sbjct: 175 QDKWFQKILTEQLSVHQIERALKSQTKKEKKTSKD----IFLAEKEKELSQSLGLPVVIH 230 Query: 66 FRDIHKKAQG 75 + +KK QG Sbjct: 231 Y---NKKHQG 237 >ref|NP_437914.1| putative transcriptional regulator, LacI family protein [Sinorhizobium meliloti] pir||F96013 probable transcription regulator, LacI family protein [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49774.1| putative transcriptional regulator, LacI family protein [Sinorhizobium meliloti] Length = 334 Score = 31.5 bits (70), Expect = 2.7 Identities = 15/51 (29%), Positives = 22/51 (42%) Query: 12 SPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARL 62 + F+Q+ + E AG G + S + +H K RE L V RL Sbjct: 2 TTDFKQQTTVTLAEVAEAAGVGESTVSRVLRNHGSFSGKARERVLDAVERL 52 >pir||JC7278 adaptor protein containing PH and SH2 domains - mouse Length = 621 Score = 31.1 bits (69), Expect = 3.0 Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 20 VAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEY----LSMVARLIIHFRDI-HKKAQ 74 V + A++ A GH++SS ++ +H TKA+ R+ + +S+ ++ RD+ H+++ Sbjct: 89 VTSVTSALKTATYGHSRSSEDVSAHAATKARVRKGFWLRNMSLC--VVDGVRDLWHRRSS 146 Query: 75 GGPD 78 PD Sbjct: 147 PEPD 150 >ref|NP_061295.1| adaptor protein with pleckstrin homology and src; insulin receptor substrate 5; adaptor protein with pleckstrin homology and src homology 2 domains [Mus musculus] gb|AAF37891.1|AF234838_1 APS protein [Mus musculus] Length = 621 Score = 31.1 bits (69), Expect = 3.0 Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 20 VAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEY----LSMVARLIIHFRDI-HKKAQ 74 V + A++ A GH++SS ++ +H TKA+ R+ + +S+ ++ RD+ H+++ Sbjct: 89 VTSVTSALKTATYGHSRSSEDVSAHAATKARVRKGFWLRNMSLC--VVDGVRDLWHRRSS 146 Query: 75 GGPD 78 PD Sbjct: 147 PEPD 150 >ref|NP_509376.1| KIX domain containing protein family member [Caenorhabditis elegans] pir||T16139 hypothetical protein F22F1.3 - Caenorhabditis elegans gb|AAA83283.1| Hypothetical protein F22F1.3 [Caenorhabditis elegans] Length = 295 Score = 31.1 bits (69), Expect = 3.1 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 10/59 (16%) Query: 16 RQKVVAQI--EEAMRKAGTGHTKS--------STEMESHVFTKAKTREEYLSMVARLII 64 RQ ++ +I E R + +T ME F K +T++EY + +AR+I+ Sbjct: 71 RQYMITKIVREAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELARIIL 129 >ref|NP_014040.1| Protein required for nuclear import with some similarity to Nsr1p, another protein involved in nuclear transport; Nip1p [Saccharomyces cerevisiae] sp|P32497|IF38_YEAST Eukaryotic translation initiation factor 3 93 kDa subunit (eIF3 p93) (Nuclear transport protein NIP1) Length = 812 Score = 30.7 bits (68), Expect = 4.7 Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 3 VPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTR 52 V +W +P KVVAQ+E+A+ K+ ++ TK + + Sbjct: 154 VRAQQQNWGTPNIFIKVVAQVEDAVNNTQQADLKNKAVARAYNTTKQRVK 203 >emb|CAA90827.1| Nip1p [Saccharomyces cerevisiae] Length = 602 Score = 30.7 bits (68), Expect = 4.7 Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 3 VPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTR 52 V +W +P KVVAQ+E+A+ K+ ++ TK + + Sbjct: 154 VRAQQQNWGTPNIFIKVVAQVEDAVNNTQQADLKNKAVARAYNTTKQRVK 203 >pir||A46417 NIP1 protein - yeast (Saccharomyces cerevisiae) Length = 812 Score = 30.7 bits (68), Expect = 4.7 Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 3 VPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTR 52 V +W +P KVVAQ+E+A+ K+ ++ TK + + Sbjct: 154 VRAQQQNWGTPNIFIKVVAQVEDAVNNTQQADLKNKAVARAYNTTKQRVK 203 >ref|NP_066189.1| adaptor protein with pleckstrin homology and src homology 2 domains [Homo sapiens] dbj|BAA22514.1| APS [Homo sapiens] Length = 632 Score = 29.9 bits (66), Expect = 6.4 Identities = 19/62 (30%), Positives = 36/62 (57%), Gaps = 7/62 (11%) Query: 26 AMRKAGTGHTKSSTEMESHVFTKAKTREEY----LSMVARLIIHFRDI-HKKAQGGPDPI 80 A++ A GH++SS ++ +H TKA+ R+ + +S+ ++ RD+ H++A PD Sbjct: 106 ALKAASYGHSRSSEDVSTHAATKARVRKGFSLRNMSLC--VVDGVRDMWHRRASPEPDAA 163 Query: 81 NA 82 A Sbjct: 164 AA 165 >ref|NP_726345.2| CG30182-PA [Drosophila melanogaster] gb|AAM68259.2| CG30182-PA [Drosophila melanogaster] Length = 249 Score = 29.5 bits (65), Expect = 9.0 Identities = 12/55 (21%), Positives = 26/55 (46%), Gaps = 9/55 (16%) Query: 18 KVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIHKK 72 K+V ++ + +R ++S+ + H+F KA+ E IHF + ++ Sbjct: 159 KLVEKLFQLLRPRMCQFSQSNKNISKHLFEKARAEEN---------IHFLKLQRE 204 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein... 165 1e-40 dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 155 1e-37 sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 155 1e-37 ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associate... 155 1e-37 gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 155 1e-37 ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associate... 148 2e-35 sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associ... 148 2e-35 ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 125 1e-28 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 125 1e-28 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 125 1e-28 ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] >gi|5052530... 123 4e-28 gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein... 120 3e-27 gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] 106 6e-23 ref|XP_147188.1| positive cofactor 2, multiprotein complex, glut... 106 8e-23 gb|AAC12944.1| TPA inducible protein [Homo sapiens] 106 8e-23 Sequences not found previously or not previously below threshold: ref|NP_509376.1| KIX domain containing protein family member [Ca... 36 0.090 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 34 0.41 ref|XP_312446.1| ENSANGP00000003034 [Anopheles gambiae] >gi|3017... 33 1.2 ref|ZP_00001618.1| hypothetical protein [Ferroplasma acidarmanus] 32 1.6 ref|NP_648778.1| CG6498-PA [Drosophila melanogaster] >gi|7294265... 31 2.3 ref|NP_221127.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]... 31 2.8 dbj|BAB72075.1| hypothetical protein [Macaca fascicularis] 31 2.8 dbj|BAB63015.1| hypothetical protein [Macaca fascicularis] 31 2.8 ref|NP_661318.1| conserved hypothetical protein [Chlorobium tepi... 31 3.8 CONVERGED! >gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Danio rerio] Length = 809 Score = 165 bits (417), Expect = 1e-40 Identities = 86/86 (100%), Positives = 86/86 (100%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA Sbjct: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 Query: 61 RLIIHFRDIHKKAQGGPDPINALQNL 86 RLIIHFRDIHKKAQGGPDPINALQNL Sbjct: 61 RLIIHFRDIHKKAQGGPDPINALQNL 86 >dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] Length = 811 Score = 155 bits (391), Expect = 1e-37 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 24 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 83 Query: 61 RLIIHFRDIH-KKAQG-GPDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 84 RLIIHFRDIHNKKSQASVSDPMNALQSL 111 >sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a) Length = 788 Score = 155 bits (391), Expect = 1e-37 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQG-GPDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA inducible protein; TPA inducible gene-1; PC2-glutamine-rich-associated protein; trinucleotide repeat containing 7 [Homo sapiens] gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Homo sapiens] Length = 748 Score = 155 bits (391), Expect = 1e-37 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQG-GPDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens] Length = 746 Score = 155 bits (391), Expect = 1e-37 Identities = 64/88 (72%), Positives = 76/88 (85%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFRQK+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVSGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQG-GPDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associated protein [Mus musculus] gb|AAK58424.1|AF328770_1 PC2-glutamine-rich-associated protein [Mus musculus] Length = 667 Score = 148 bits (373), Expect = 2e-35 Identities = 63/88 (71%), Positives = 75/88 (84%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFR K+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQG-GPDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 148 bits (373), Expect = 2e-35 Identities = 63/88 (71%), Positives = 75/88 (84%), Gaps = 2/88 (2%) Query: 1 MDVPGPDSDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 MDV G ++DWRS AFR K+V+QIE+AMRKAG H+KSS +MESHVF KAKTR+EYLS+VA Sbjct: 1 MDVWGQETDWRSAAFRLKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVA 60 Query: 61 RLIIHFRDIH-KKAQG-GPDPINALQNL 86 RLIIHFRDIH KK+Q DP+NALQ+L Sbjct: 61 RLIIHFRDIHNKKSQASVSDPMNALQSL 88 >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 125 bits (314), Expect = 1e-28 Identities = 19/83 (22%), Positives = 42/83 (49%), Gaps = 6/83 (7%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LIIHFRDIHKKAQGGPDPINALQ 84 +I+ + + K+ P + Q Sbjct: 63 -VINAINCNSKSAAVPSVLQPSQ 84 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 125 bits (314), Expect = 1e-28 Identities = 19/83 (22%), Positives = 42/83 (49%), Gaps = 6/83 (7%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LIIHFRDIHKKAQGGPDPINALQ 84 +I+ + + K+ P + Q Sbjct: 63 -VINAINCNSKSAAVPSVLQPSQ 84 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 125 bits (314), Expect = 1e-28 Identities = 19/83 (22%), Positives = 42/83 (49%), Gaps = 6/83 (7%) Query: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 Query: 62 LIIHFRDIHKKAQGGPDPINALQ 84 +I+ + + K+ P + Q Sbjct: 63 -VINAINCNSKSAAVPSVLQPSQ 84 >ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] gb|AAD38595.1|AF145620_1 BcDNA.GH03922 [Drosophila melanogaster] gb|AAF51490.1| CG4184-PA [Drosophila melanogaster] Length = 749 Score = 123 bits (310), Expect = 4e-28 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 23/102 (22%) Query: 8 SDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFR 67 DW+S FRQ V+++I + + TK++ ME+H+F K++T++EYL +VA+L +H++ Sbjct: 3 EDWQSQKFRQNVISKIHDLLPPNAQDQTKNAGVMENHIFRKSRTKDEYLGLVAKLFMHYK 62 Query: 68 DIHKKA---------QGGP--------------DPINALQNL 86 D+ +K+ QGGP DP+NALQNL Sbjct: 63 DMSRKSQQQQQQQQQQGGPPPNAEMGGGQNMMQDPLNALQNL 104 >gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Xenopus laevis] Length = 846 Score = 120 bits (302), Expect = 3e-27 Identities = 56/72 (77%), Positives = 62/72 (85%), Gaps = 2/72 (2%) Query: 17 QKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDI-HKKAQ- 74 QK+V+QI+EAMRKAG HTKSS EMESHVF KAKTREEYLS+VARLIIHFRDI +KK Q Sbjct: 1 QKLVSQIDEAMRKAGVAHTKSSKEMESHVFLKAKTREEYLSLVARLIIHFRDIFNKKNQT 60 Query: 75 GGPDPINALQNL 86 DP+NALQNL Sbjct: 61 AASDPMNALQNL 72 >gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] Length = 754 Score = 106 bits (265), Expect = 6e-23 Identities = 48/62 (77%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDI-HKKAQGGP-DPINALQ 84 MRKAG HTKSS +MESHVF KAKTREEYLS+VARLIIHFRDI +KK+Q DP+NALQ Sbjct: 1 MRKAGVAHTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDPMNALQ 60 Query: 85 NL 86 NL Sbjct: 61 NL 62 >ref|XP_147188.1| positive cofactor 2, multiprotein complex, glutamine/Q-rich-associated protein [Mus musculus] Length = 763 Score = 106 bits (264), Expect = 8e-23 Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIH-KKAQG-GPDPINALQ 84 MRKAG H+KSS +MESHVF KAKTR+EYLS+VARLIIHFRDIH KK+Q DP+NALQ Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 NL 86 +L Sbjct: 61 SL 62 >gb|AAC12944.1| TPA inducible protein [Homo sapiens] Length = 579 Score = 106 bits (264), Expect = 8e-23 Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 2/62 (3%) Query: 27 MRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIH-KKAQG-GPDPINALQ 84 MRKAG H+KSS +MESHVF KAKTR+EYLS+VARLIIHFRDIH KK+Q DP+NALQ Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 NL 86 +L Sbjct: 61 SL 62 >ref|NP_509376.1| KIX domain containing protein family member [Caenorhabditis elegans] pir||T16139 hypothetical protein F22F1.3 - Caenorhabditis elegans gb|AAA83283.1| Hypothetical protein F22F1.3 [Caenorhabditis elegans] Length = 295 Score = 36.4 bits (83), Expect = 0.090 Identities = 15/59 (25%), Positives = 29/59 (48%), Gaps = 10/59 (16%) Query: 16 RQKVVAQI-EEAMRKAGTGHTKSSTE---------MESHVFTKAKTREEYLSMVARLII 64 RQ ++ +I EA+ + + + ME F K +T++EY + +AR+I+ Sbjct: 71 RQYMITKIVREAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELARIIL 129 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 34.1 bits (77), Expect = 0.41 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 11/86 (12%) Query: 8 SDWRSP---AFRQKVVAQIEEAMRKA-------GTGHTKS-STEMESHVFTKAKTREEYL 56 SDWR+P RQ++V +I + +++ G K + E +FT A ++ +YL Sbjct: 15 SDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYL 74 Query: 57 SMVARLIIHFRDIHKKAQGGPDPINA 82 ++ ++ + A G +P + Sbjct: 75 RKISLKMLSMESRSQNASGSNEPPHP 100 >ref|XP_312446.1| ENSANGP00000003034 [Anopheles gambiae] gb|EAA08210.2| ENSANGP00000003034 [Anopheles gambiae str. PEST] Length = 1318 Score = 32.5 bits (73), Expect = 1.2 Identities = 11/59 (18%), Positives = 26/59 (43%), Gaps = 3/59 (5%) Query: 28 RKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIHKKAQGGPDPINALQNL 86 + + H+ + ++ F A + S +R I +F K+++ P P ++N+ Sbjct: 944 PRNRSSHSGPGESIATYAFYLANKPD---STFSRNISNFIACTKESKAAPHPQVVMRNM 999 >ref|ZP_00001618.1| hypothetical protein [Ferroplasma acidarmanus] Length = 1156 Score = 32.2 bits (72), Expect = 1.6 Identities = 16/70 (22%), Positives = 36/70 (50%), Gaps = 4/70 (5%) Query: 16 RQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVARLIIHFRDIHKKAQG 75 R+++ +++E + + +ME + + K+RE Y S +A++ F+ +K+Q Sbjct: 765 RKELFKKLKELAPEN----VEIEKQMEEELGNEMKSRENYSSKLAQIETEFKHFTEKSQE 820 Query: 76 GPDPINALQN 85 + I L+N Sbjct: 821 LEEKITGLEN 830 >ref|NP_648778.1| CG6498-PA [Drosophila melanogaster] gb|AAF49616.1| CG6498-PA [Drosophila melanogaster] Length = 2139 Score = 31.4 bits (70), Expect = 2.3 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 2 DVPGPD-SDWRSPAFRQKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA 60 D+ PD DW A + +++Q+ + + G + EM+ H + L A Sbjct: 1064 DIEWPDSEDWPVQAEAKDIISQLLQQNPRDRLGTQSGALEMKEHEYFLGMDWNSLLRQKA 1123 Query: 61 RLI 63 + Sbjct: 1124 EFV 1126 >ref|NP_221127.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] sp|O05949|DPO1_RICPR DNA polymerase I (POL I) pir||C71638 DNA polymerase I (polA) RP776 - Rickettsia prowazekii emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii] emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii] emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii] Length = 867 Score = 31.4 bits (70), Expect = 2.8 Identities = 10/37 (27%), Positives = 25/37 (67%) Query: 37 SSTEMESHVFTKAKTREEYLSMVARLIIHFRDIHKKA 73 S+ ++ ++FTK T++ ++ AR++I+F ++K+ Sbjct: 416 SAGLVQKNLFTKTLTKDNIINESARIVINFISLYKQT 452 >dbj|BAB72075.1| hypothetical protein [Macaca fascicularis] Length = 743 Score = 31.4 bits (70), Expect = 2.8 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Query: 16 RQKVVAQIEEAMRKAGTGHTKSSTEMESHVFT----KAKTREEYLSMVARLIIHFRDIHK 71 ++ ++ Q+E RK KS+ E+ + K REEYL ++ L +H R+ ++ Sbjct: 445 QEALLKQLENEKRKYDED-VKSNQELSEKLSKLQQEKEALREEYLRLLKLLNVHVRNYNE 503 Query: 72 KAQ 74 K Q Sbjct: 504 KHQ 506 >dbj|BAB63015.1| hypothetical protein [Macaca fascicularis] Length = 578 Score = 31.4 bits (70), Expect = 2.8 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Query: 16 RQKVVAQIEEAMRKAGTGHTKSSTEMESHVFT----KAKTREEYLSMVARLIIHFRDIHK 71 ++ ++ Q+E RK KS+ E+ + K REEYL ++ L +H R+ ++ Sbjct: 445 QEALLKQLENEKRKYDED-VKSNQELSEKLSKLQQEKEALREEYLRLLKLLNVHVRNYNE 503 Query: 72 KAQ 74 K Q Sbjct: 504 KHQ 506 >ref|NP_661318.1| conserved hypothetical protein [Chlorobium tepidum TLS] gb|AAM71660.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 380 Score = 30.6 bits (68), Expect = 3.8 Identities = 15/63 (23%), Positives = 30/63 (46%), Gaps = 1/63 (1%) Query: 17 QKVVAQIEEAMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVA-RLIIHFRDIHKKAQG 75 Q V+ + + + + + +S + H+ ++EE + MVA RL ++ +K G Sbjct: 230 QAVINALRDTLSRQNSLTPQSQRSVYEHIRRFGVSKEEVMEMVAERLSPDESEVFRKNFG 289 Query: 76 GPD 78 G D Sbjct: 290 GLD 292 Database: /local/data/sequences/fasta/nr Posted date: Jun 30, 2003 5:37 PM Number of letters in database: 468,778,868 Number of sequences in database: 1,459,938 Lambda K H 0.306 0.153 0.434 Lambda K H 0.267 0.0468 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,476,146 Number of Sequences: 1459938 Number of extensions: 8618836 Number of successful extensions: 35819 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 43 Number of HSP's that attempted gapping in prelim test: 35721 Number of HSP's gapped (non-prelim): 104 length of query: 142 length of database: 468,778,868 effective HSP length: 118 effective length of query: 24 effective length of database: 296,506,184 effective search space: 7116148416 effective search space used: 7116148416 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 65 (29.5 bits)