################################### Hits in CePCAP with E < 0.01 ######SEQUENCE MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA QARNPPVTVATTQASTTPSAPNPPGGL ######COMMAND blastpgp -i CePCAP -F T -j 10 -a 4 -h 0.005 -e 10 -d nr ######HIT_SUMMARY HSP__Pos in Q_________________Subject__________________from species_______Pos in S___E-value___ 1 1 .. 124 NP_741152.1| Putative nuclear protein, n Caenorhabditis 1 .. 124 E= 3.0e-57 1 1 .. 124 NP_741151.1| Putative nuclear protein, n Caenorhabditis 1 .. 121 E= 3.0e-54 1 1 .. 124 T16726 hypothetical protein R12B2.5 - Ca Caenorhabditis 1 .. 104 E= 3.0e-43 1 4 .. 63 NP_608528.1| CG4184-PA [Drosophila melan Drosophila mela 3 .. 57 E= 3.0e-03 1 3 .. 64 BAC03446.1| FLJ00386 protein [Homo sapie Homo sapiens 30 .. 86 E= 3.0e-05 1 3 .. 64 NP_056973.2| positive cofactor 2, glutam Homo sapiens 7 .. 63 E= 3.0e-05 1 3 .. 64 AAK58423.1|AF328769_1 PC2-glutamine-rich Homo sapiens 7 .. 63 E= 3.0e-05 1 3 .. 64 Q96RN5|PCAP_HUMAN Positive cofactor 2 gl -------- 7 .. 63 E= 3.0e-05 1 3 .. 113 AAH45472.1| Similar to PC2 (positive cof Danio rerio 7 .. 99 E= 7.0e-05 1 3 .. 102 Q924H2|PCAP_MOUSE Positive cofactor 2 gl -------- 7 .. 105 E= 1.0e-04 1 3 .. 102 NP_291087.1| positive cofactor 2, glutam Mus musculus 7 .. 105 E= 2.0e-04 1 28 .. 102 XP_147188.1| positive cofactor 2, multip Mus musculus 1 .. 79 E= 1.0e-23 1 28 .. 102 AAC12944.1| TPA inducible protein [Homo Homo sapiens 1 .. 79 E= 6.0e-17 1 13 .. 84 AAH46263.1| Similar to PC2 (positive cof Xenopus laevis 1 .. 70 E= 7.0e-17 1 28 .. 84 AAM83255.1|AF378334_1 ARC105 [Xenopus la Xenopus laevis 1 .. 60 E= 4.0e-15 ***** 15 Number of hits for CePCAP below with E-value < 0.01 : 15 ######RAW OUTPUT BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= CePCAP (147 letters) Database: /local/data/sequences/fasta/nr 1,459,938 sequences; 468,778,868 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 220 3e-57 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 210 3e-54 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 173 3e-43 ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] >gi|5052530... 37 0.059 gb|AAD32646.1|AF136386_1 gyrase B [Photobacterium phosphoreum] 33 0.55 gb|AAB80833.1| DNA gyrase beta-subunit [Shewanella algae] 33 0.88 ref|NP_810236.1| putative ABC transporter permease protein [Bact... 33 0.97 gb|AAF21006.1|AF208255_1 DNA gyrase subunit beta [Aeromonas hydr... 33 1.1 gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein... 33 1.1 gb|AAF21001.1|AF208250_1 DNA gyrase subunit beta [Aeromonas hydr... 33 1.1 gb|AAF21003.1|AF208252_1 DNA gyrase subunit beta [Aeromonas hydr... 32 1.3 gb|AAB63505.1| gyrase B subunit [Pseudoalteromonas peptidolytica] 32 1.3 gb|AAF21009.1|AF208258_1 DNA gyrase subunit beta [Aeromonas hydr... 32 1.4 ref|ZP_00123560.1| hypothetical protein [Haemophilus somnus 129PT] 32 1.4 gb|AAB63492.1| gyrase B subunit [Alteromonas macleodii] 32 1.4 dbj|BAB87022.1| DNA gyrase subunit B [Vibrio diazotrophicus] 32 1.5 gb|AAB63498.1| gyrase B subunit [Pseudoalteromonas espejiana] 32 1.5 gb|AAF21007.1|AF208256_1 DNA gyrase subunit beta [Aeromonas hydr... 32 1.5 gb|AAB80822.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.5 gb|AAB80812.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.5 gb|AAB80823.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.5 gb|AAC03528.1| gyrase subunit B [Shewanella oneidensis] 32 1.5 gb|AAB63494.1| gyrase B subunit [Pseudoalteromonas atlantica] 32 1.5 gb|AAB92595.1| gyrase beta subunit [Shewanella frigidimarina] 32 1.5 gb|AAB80814.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.5 dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea] 32 1.5 gb|AAB63496.1| gyrase B subunit [Pseudoalteromonas carrageenovora] 32 1.5 dbj|BAB87023.1| DNA gyrase subunit B [Vibrio gazogenes] 32 1.5 gb|AAB80834.1| DNA gyrase beta-subunit [Shewanella algae] 32 1.6 ref|NP_150479.1| LSDV045 putative DNA-binding phosphoprotein [lu... 32 1.6 gb|AAB63495.1| gyrase B subunit [Pseudoalteromonas aurantia] 32 1.6 gb|AAL01491.1| gyrase B [bacterium PV-4] 32 1.6 gb|AAB63501.1| gyrase B subunit [Pseudoalteromonas nigrifaciens] 32 1.6 dbj|BAA86938.1| gyrase B subunit [Vibrio hollisae] 32 1.6 gb|AAB80840.1| DNA gyrase beta-subunit [Shewanella sp. DLM-7] 32 1.6 gb|AAB63504.1| gyrase B subunit [Pseudoalteromonas undina] 32 1.6 dbj|BAB87021.1| DNA gyrase subunit B [Vibrio campbellii] 32 1.6 gb|AAD30293.1|AF139115_1 gyrase B subunit [Pseudoalteromonas pis... 32 1.6 gb|AAD32647.1|AF136391_1 gyrase B [Shewanella sp. ANA-3] 32 1.7 gb|AAB63502.1| gyrase B subunit [Pseudoalteromonas rubra] 32 1.7 gb|AAC03530.1| gyrase subunit B [Shewanella pealeana] 32 1.7 dbj|BAB69455.1| gyrase subunitB [Salmonella typhi] 32 1.7 gb|AAL01490.1| gyrase B [Shewanella sp. CL256/73] 32 1.7 ref|NP_407516.1| DNA gyrase subunit B [Yersinia pestis] >gi|2529... 32 1.7 gb|AAB80842.1| DNA gyrase beta-subunit [Citrobacter sp. AQ-2] 32 1.7 ref|NP_671401.1| DNA gyrase subunit B, type II topoisomerase [Ye... 32 1.7 dbj|BAC10603.1| DNA gyrase B subunit [Shewanella marinintestina] 32 1.7 gb|AAB63497.1| gyrase B subunit [Pseudoalteromonas citrea] 32 1.7 emb|CAD56007.1| DNA gyrase [Providencia stuartii] 32 1.7 ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR... 32 1.7 gb|AAL01492.1| gyrase B [Shewanella baltica] 32 1.7 dbj|BAC10602.1| DNA gyrase B subunit [Shewanella marinintestina]... 32 1.8 dbj|BAB87025.1| DNA gyrase subunit B [Listonella pelagia] 32 1.8 gb|AAL01493.1| gyrase B [Shewanella sp. 184] 32 1.9 dbj|BAC06814.1| gyrase B [Yersinia enterocolitica] >gi|22091048|... 32 1.9 dbj|BAC06812.1| gyrase B [Yersinia enterocolitica] >gi|22091044|... 32 1.9 gb|AAB63499.1| gyrase B subunit [Pseudoalteromonas haloplanktis ... 32 1.9 dbj|BAC10607.1| DNA gyrase B subunit [Shewanella sairae] 32 1.9 ref|NP_796393.1| DNA gyrase, subunit B [Vibrio parahaemolyticus ... 32 1.9 dbj|BAB87017.1| DNA gyrase subunit B [Serratia marcescens] 32 1.9 gb|AAD32644.1|AF136384_1 gyrase B [Photobacterium damselae subsp... 32 1.9 gb|AAL01494.1| gyrase B [bacterium W3 18-1] 32 1.9 gb|AAC03527.1| gyrase subunit B [Shewanella oneidensis] 32 1.9 gb|AAB92593.1| gyrase beta subunit [Shewanella pealeana] 32 1.9 dbj|BAC10605.1| DNA gyrase B subunit [Shewanella schlegeliana] >... 32 1.9 gb|AAB63503.1| gyrase B subunit [Pseudoalteromonas tetraodonis] 32 1.9 gb|AAC38147.1| gyrase B subunit [Vibrio parahaemolyticus] 32 1.9 gb|AAC03529.1| gyrase subunit B [Shewanella oneidensis] 32 2.0 gb|AAB63500.1| gyrase B subunit [Pseudoalteromonas luteoviolacea] 32 2.0 gb|AAF61925.1| DNA gyrase B [Klebsiella pneumoniae subsp. pneumo... 32 2.0 dbj|BAC06807.1| gyrase B [Enterobacter cloacae] 32 2.1 dbj|BAC06757.1| gyrase B [Salmonella paratyphi] >gi|22090934|dbj... 32 2.1 dbj|BAC06808.1| gyrase B [Enterobacter cloacae] 32 2.1 dbj|BAC06747.1| gyrase B [Salmonella enterica subsp. enterica se... 32 2.1 dbj|BAC06755.1| gyrase B [Salmonella enterica subsp. enterica se... 32 2.1 gb|AAF61927.1| DNA gyrase B [Klebsiella pneumoniae] 32 2.1 dbj|BAC06809.1| gyrase B [Klebsiella oxytoca] 32 2.1 gb|AAD32645.1|AF136385_1 gyrase B [Photobacterium leiognathi] 32 2.1 dbj|BAC06687.1| gyrase B [Escherichia coli] 32 2.2 ref|NP_458107.1| DNA gyrase subunit B [Salmonella enterica subsp... 32 2.2 gb|AAF61926.1| DNA gyrase B [Klebsiella pneumoniae subsp. ozaenae] 32 2.2 dbj|BAC06652.1| gyrase B [Escherichia coli] 32 2.2 dbj|BAC06612.1| gyrase B [Escherichia coli] >gi|22090648|dbj|BAC... 32 2.2 dbj|BAC06724.1| gyrase B [Escherichia coli] 32 2.2 dbj|BAC06768.1| gyrase B [Salmonella enterica subsp. enterica se... 32 2.2 dbj|BAC06810.1| gyrase B [Klebsiella pneumoniae] >gi|22091040|db... 32 2.2 dbj|BAC06804.1| gyrase B [Enterobacter cloacae] 32 2.2 dbj|BAC06746.1| gyrase B [Salmonella enterica subsp. enterica se... 32 2.2 dbj|BAC06613.1| gyrase B [Escherichia coli] >gi|22090662|dbj|BAC... 32 2.2 dbj|BAC06614.1| gyrase B [Escherichia coli] >gi|22090658|dbj|BAC... 32 2.2 dbj|BAC06805.1| gyrase B [Enterobacter cloacae] >gi|22091030|dbj... 32 2.2 emb|CAA69221.1| subunit B of DNA gyrase [Salmonella typhimurium] 32 2.2 dbj|BAC06743.1| gyrase B [Escherichia coli] 32 2.2 dbj|BAC06803.1| gyrase B [Enterobacter cloacae] 32 2.2 dbj|BAC06802.1| gyrase B [Enterobacter cloacae] 32 2.2 dbj|BAC57433.1| gyrase B subunit [Pseudoalteromonas piscicida] 32 2.2 dbj|BAC06801.1| gyrase B [Enterobacter aerogenes] 32 2.2 ref|NP_756480.1| DNA gyrase subunit B [Escherichia coli CFT073] ... 32 2.2 gb|AAA62050.1| DNA gyrase, subunit B 32 2.3 ref|NP_709501.1| DNA gyrase subunit B GyrB [Shigella flexneri 2a... 32 2.3 gb|AAB80844.1| DNA gyrase beta-subunit [Citrobacter sp. MAM-1] 32 2.3 ref|NP_312661.1| DNA gyrase subunit B GyrB [Escherichia coli O15... 32 2.3 ref|NP_418154.1| DNA gyrase subunit B, type II topoisomerase, AT... 32 2.3 dbj|BAC30803.1| unnamed protein product [Mus musculus] 32 2.4 ref|NP_290332.1| DNA gyrase subunit B, type II topoisomerase, AT... 32 2.4 ref|NP_062599.1| DNA gyrase, subunit B [Vibrio cholerae] >gi|113... 32 2.4 dbj|BAB87019.1| DNA gyrase subunit B [Serratia rubidaea] 32 2.4 ref|NP_759958.1| DNA gyrase, subunit B [Vibrio vulnificus CMCP6]... 32 2.4 ref|NP_609637.2| CG16970-PA [Drosophila melanogaster] >gi|283803... 32 2.5 gb|AAD32643.1|AF136383_1 gyrase B [Photobacterium angustum] 31 2.5 gb|AAB80824.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 31 2.6 gb|AAB80843.1| DNA gyrase beta-subunit [Citrobacter sp. JYME-1] 31 2.6 ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associate... 31 2.7 gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 31 2.7 dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 31 2.7 gb|AAB80815.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 31 2.7 emb|CAB57885.1| DNA gyrase B subunit [Photobacterium damselae su... 31 2.9 emb|CAB57876.1| DNA gyrase B subunit [Photobacterium damselae su... 31 3.0 pir||T30322 type I site-specific deoxyribonuclease (EC 3.1.21.3)... 31 3.0 sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 31 3.0 gb|AAC24008.1| DNA gyrase subunit B [Citrobacter freundii] 31 3.0 ref|NP_057913.1| complement component 6 [Mus musculus] >gi|65030... 31 3.3 gb|AAH11251.1| complement component 6 [Mus musculus] 31 3.3 dbj|BAB69454.1| gyrase subunitB [Salmonella paratyphi] 31 3.4 gb|AAB59433.1| complement component C6 31 3.4 gb|AAB80830.1| DNA gyrase beta-subunit [Shewanella algae] 31 3.5 emb|CAA92320.1| GyrB [Salmonella typhimurium] 31 3.7 ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] 31 4.2 emb|CAB60271.1| DNA gyrase B subunit [Photobacterium damselae su... 30 4.3 emb|CAD57659.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 30 4.4 emb|CAD57639.1| DNA gyrase subunit B [Vibrio splendidus] 30 4.4 emb|CAD57630.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 30 4.5 emb|CAD57663.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 30 4.5 emb|CAD57628.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 30 4.7 emb|CAD57660.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 30 4.7 ref|NP_778415.1| anthranilate synthase component I [Xylella fast... 30 4.9 emb|CAD57657.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 30 4.9 emb|CAD57629.1| DNA gyrase subunit B [Vibrio splendidus] 30 5.0 ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] 30 5.0 gb|EAA26937.1| hypothetical protein [Neurospora crassa] 30 5.6 pir||T15824 hypothetical protein C52E12.4 - Caenorhabditis elegans 30 6.0 emb|CAC24685.1| possible SNF2-related helicase [Leishmania major] 30 6.0 pir||A34372 complement C6 precursor [validated] - human >gi|1797... 30 6.2 ref|NP_000056.1| Complement component 6 precursor [Homo sapiens]... 30 6.2 ref|NP_495437.2| uDENN domain and DENN domain and dDENN domain ... 30 6.8 ref|ZP_00084216.1| hypothetical protein [Pseudomonas fluorescens... 30 6.8 ref|NP_297503.1| anthranilate synthase component I [Xylella fast... 30 6.9 sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associ... 29 9.5 >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 220 bits (560), Expect = 3e-57 Identities = 124/124 (100%), Positives = 124/124 (100%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 Query: 121 QARN 124 QARN Sbjct: 121 QARN 124 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 210 bits (535), Expect = 3e-54 Identities = 121/124 (97%), Positives = 121/124 (97%), Gaps = 3/124 (2%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA GNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA---GNTPAGGTPGYRAPVPPDPQPTSA 117 Query: 121 QARN 124 QARN Sbjct: 118 QARN 121 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 173 bits (439), Expect = 3e-43 Identities = 104/124 (83%), Positives = 104/124 (83%), Gaps = 20/124 (16%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA DPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA--------------------DPQPTSA 100 Query: 121 QARN 124 QARN Sbjct: 101 QARN 104 >ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] gb|AAD38595.1|AF145620_1 BcDNA.GH03922 [Drosophila melanogaster] gb|AAF51490.1| CG4184-PA [Drosophila melanogaster] Length = 749 Score = 37.0 bits (84), Expect = 0.059 Identities = 22/60 (36%), Positives = 35/60 (57%), Gaps = 5/60 (8%) Query: 4 EDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKV 63 EDW S KFR++VI ++ L N Q+ +A +E ++F K +KDEY+ +AK+ Sbjct: 3 EDWQSQKFRQNVISKIHDLLPPNAQDQTK-----NAGVMENHIFRKSRTKDEYLGLVAKL 57 >gb|AAD32646.1|AF136386_1 gyrase B [Photobacterium phosphoreum] Length = 420 Score = 33.5 bits (75), Expect = 0.55 Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E +A +I A+ C + P L+ Sbjct: 347 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----LATLITAMGCGIGRDEYNPDKLRLP 402 Query: 84 QFH 86 Q+H Sbjct: 403 QYH 405 >gb|AAB80833.1| DNA gyrase beta-subunit [Shewanella algae] Length = 419 Score = 32.7 bits (73), Expect = 0.88 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G +VE+ F K +S E +A INA+ C Sbjct: 345 RNRKNQAILPLKGKIFKVEKARFDKMLSSQE----VATXINALGC 385 >ref|NP_810236.1| putative ABC transporter permease protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO76430.1| putative ABC transporter permease protein [Bacteroides thetaiotaomicron VPI-5482] Length = 398 Score = 32.7 bits (73), Expect = 0.97 Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 4/53 (7%) Query: 58 RTIAKVINAINCNSKSAAVP-SVLQPSQFHSPPCTTAALLGNTPAGGTPGYRA 109 R I + + + +A +P ++L+P + P T AA LG PAGG P Y A Sbjct: 318 RAIGETMAVLMVTGNAAVIPTTILEP--LRTIPATIAAELGEAPAGG-PHYEA 367 >gb|AAF21006.1|AF208255_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 386 Score = 32.7 bits (73), Expect = 1.1 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRVS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Danio rerio] Length = 809 Score = 32.7 bits (73), Expect = 1.1 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 20/112 (17%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 Query: 63 -VINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPP 113 +I+ + + K+ P + Q N P GG PG P PP Sbjct: 62 LIIHFRDIHKKAQGGPDPINALQ-------------NLP-GGVPGVIGPRPP 99 >gb|AAF21001.1|AF208250_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 387 Score = 32.7 bits (73), Expect = 1.1 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRVS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >gb|AAF21003.1|AF208252_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 387 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRLS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >gb|AAB63505.1| gyrase B subunit [Pseudoalteromonas peptidolytica] Length = 420 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKASFDKMLSSQE----VATLITALGC 386 >gb|AAF21009.1|AF208258_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 386 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S R + +I A+ C + P ++ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISS----REVGTLITALGCGIGRDEYNPDKMRVS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >ref|ZP_00123560.1| hypothetical protein [Haemophilus somnus 129PT] Length = 807 Score = 32.3 bits (72), Expect = 1.4 Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNRQN LP+ G VE+ F K +S E + +I A+ C Sbjct: 440 RNRQNQAILPLKGKILNVEKARFDKMLSSQE----VGTLITALGC 480 >gb|AAB63492.1| gyrase B subunit [Alteromonas macleodii] Length = 419 Score = 32.3 bits (72), Expect = 1.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAVGC 385 >dbj|BAB87022.1| DNA gyrase subunit B [Vibrio diazotrophicus] Length = 467 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 408 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 448 >gb|AAB63498.1| gyrase B subunit [Pseudoalteromonas espejiana] Length = 423 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >gb|AAF21007.1|AF208256_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 384 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRVS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >gb|AAB80822.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAB80812.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAB80823.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAC03528.1| gyrase subunit B [Shewanella oneidensis] Length = 417 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAB63494.1| gyrase B subunit [Pseudoalteromonas atlantica] Length = 423 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >gb|AAB92595.1| gyrase beta subunit [Shewanella frigidimarina] Length = 419 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAB80814.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea] Length = 806 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 438 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 478 >gb|AAB63496.1| gyrase B subunit [Pseudoalteromonas carrageenovora] Length = 423 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >dbj|BAB87023.1| DNA gyrase subunit B [Vibrio gazogenes] Length = 463 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 404 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 444 >gb|AAB80834.1| DNA gyrase beta-subunit [Shewanella algae] Length = 419 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >ref|NP_150479.1| LSDV045 putative DNA-binding phosphoprotein [lumpy skin disease virus] gb|AAK85006.1| LSDV045 putative DNA-binding phosphoprotein [lumpy skin disease virus] gb|AAN02613.1| putative DNA-binding phosphoprotein [lumpy skin disease virus] Length = 276 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 9/57 (15%) Query: 36 PGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTT 92 PG + Q +E ++KC EY++T++K SK V SV+ SQ P C++ Sbjct: 16 PGMSTQSDEKKYSKCHEVIEYLKTLSK--------SKEKCVESVIL-SQSQYPSCSS 63 >gb|AAB63495.1| gyrase B subunit [Pseudoalteromonas aurantia] Length = 420 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAL01491.1| gyrase B [bacterium PV-4] Length = 392 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 334 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 374 >gb|AAB63501.1| gyrase B subunit [Pseudoalteromonas nigrifaciens] Length = 423 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >dbj|BAA86938.1| gyrase B subunit [Vibrio hollisae] Length = 420 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAB80840.1| DNA gyrase beta-subunit [Shewanella sp. DLM-7] Length = 419 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAB63504.1| gyrase B subunit [Pseudoalteromonas undina] Length = 423 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >dbj|BAB87021.1| DNA gyrase subunit B [Vibrio campbellii] Length = 467 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 408 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 448 >gb|AAD30293.1|AF139115_1 gyrase B subunit [Pseudoalteromonas piscicida] Length = 420 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAD32647.1|AF136391_1 gyrase B [Shewanella sp. ANA-3] Length = 418 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAB63502.1| gyrase B subunit [Pseudoalteromonas rubra] Length = 423 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >gb|AAC03530.1| gyrase subunit B [Shewanella pealeana] Length = 419 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAB69455.1| gyrase subunitB [Salmonella typhi] Length = 152 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 59 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 99 >gb|AAL01490.1| gyrase B [Shewanella sp. CL256/73] Length = 399 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 334 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 374 >ref|NP_407516.1| DNA gyrase subunit B [Yersinia pestis] pir||AD0497 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) chain B [imported] - Yersinia pestis (strain CO92) emb|CAC93544.1| DNA gyrase subunit B [Yersinia pestis CO92] Length = 804 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >gb|AAB80842.1| DNA gyrase beta-subunit [Citrobacter sp. AQ-2] Length = 419 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >ref|NP_671401.1| DNA gyrase subunit B, type II topoisomerase [Yersinia pestis KIM] gb|AAM87652.1|AE014012_9 DNA gyrase subunit B, type II topoisomerase [Yersinia pestis KIM] Length = 805 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >dbj|BAC10603.1| DNA gyrase B subunit [Shewanella marinintestina] Length = 380 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 364 >gb|AAB63497.1| gyrase B subunit [Pseudoalteromonas citrea] Length = 422 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 348 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 388 >emb|CAD56007.1| DNA gyrase [Providencia stuartii] Length = 80 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 14 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 54 >ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR-1] gb|AAN53098.1|AE015452_11 DNA gyrase, B subunit [Shewanella oneidensis MR-1] Length = 805 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >gb|AAL01492.1| gyrase B [Shewanella baltica] Length = 369 Score = 32.0 bits (71), Expect = 1.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 323 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 363 >dbj|BAC10602.1| DNA gyrase B subunit [Shewanella marinintestina] dbj|BAC10604.1| DNA gyrase B subunit [Shewanella marinintestina] Length = 377 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 364 >dbj|BAB87025.1| DNA gyrase subunit B [Listonella pelagia] Length = 464 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 405 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 445 >gb|AAL01493.1| gyrase B [Shewanella sp. 184] Length = 393 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 332 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 372 >dbj|BAC06814.1| gyrase B [Yersinia enterocolitica] dbj|BAC06815.1| gyrase B [Yersinia enterocolitica] dbj|BAC06816.1| gyrase B [Yersinia enterocolitica] Length = 390 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06812.1| gyrase B [Yersinia enterocolitica] dbj|BAC06813.1| gyrase B [Yersinia enterocolitica] dbj|BAC06817.1| gyrase B [Yersinia enterocolitica] dbj|BAC06818.1| gyrase B [Yersinia enterocolitica] Length = 390 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB63499.1| gyrase B subunit [Pseudoalteromonas haloplanktis subsp. haloplanktis] Length = 422 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >dbj|BAC10607.1| DNA gyrase B subunit [Shewanella sairae] Length = 377 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 364 >ref|NP_796393.1| DNA gyrase, subunit B [Vibrio parahaemolyticus RIMD 2210633] sp|O51859|GYRB_VIBPA DNA gyrase subunit B dbj|BAC58277.1| DNA gyrase, subunit B [Vibrio parahaemolyticus] Length = 805 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >dbj|BAB87017.1| DNA gyrase subunit B [Serratia marcescens] Length = 389 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 330 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 370 >gb|AAD32644.1|AF136384_1 gyrase B [Photobacterium damselae subsp. damselae] Length = 419 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 386 >gb|AAL01494.1| gyrase B [bacterium W3 18-1] Length = 406 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 334 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 374 >gb|AAC03527.1| gyrase subunit B [Shewanella oneidensis] Length = 418 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAB92593.1| gyrase beta subunit [Shewanella pealeana] Length = 419 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAC10605.1| DNA gyrase B subunit [Shewanella schlegeliana] dbj|BAC10606.1| DNA gyrase B subunit [Shewanella schlegeliana] Length = 377 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 364 >gb|AAB63503.1| gyrase B subunit [Pseudoalteromonas tetraodonis] Length = 422 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >gb|AAC38147.1| gyrase B subunit [Vibrio parahaemolyticus] Length = 419 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAC03529.1| gyrase subunit B [Shewanella oneidensis] Length = 419 Score = 31.6 bits (70), Expect = 2.0 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAB63500.1| gyrase B subunit [Pseudoalteromonas luteoviolacea] Length = 420 Score = 31.6 bits (70), Expect = 2.0 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAF61925.1| DNA gyrase B [Klebsiella pneumoniae subsp. pneumoniae] Length = 394 Score = 31.6 bits (70), Expect = 2.0 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 333 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 373 >dbj|BAC06807.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06757.1| gyrase B [Salmonella paratyphi] dbj|BAC06758.1| gyrase B [Salmonella paratyphi] dbj|BAC06759.1| gyrase B [Salmonella paratyphi] Length = 390 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06808.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06747.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport] dbj|BAC06748.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06749.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06750.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06751.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06752.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06753.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar] dbj|BAC06754.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport] dbj|BAC06760.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B] dbj|BAC06761.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson] dbj|BAC06762.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06763.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06764.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06765.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06766.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06767.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06769.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium] dbj|BAC06770.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 390 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06755.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg] dbj|BAC06756.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg] Length = 390 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAF61927.1| DNA gyrase B [Klebsiella pneumoniae] Length = 396 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 333 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 373 >dbj|BAC06809.1| gyrase B [Klebsiella oxytoca] Length = 390 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAD32645.1|AF136385_1 gyrase B [Photobacterium leiognathi] Length = 419 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 386 >dbj|BAC06687.1| gyrase B [Escherichia coli] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >ref|NP_458107.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_462735.1| DNA gyrase, subunit B (type II topoisomerase) [Salmonella typhimurium LT2] ref|NP_807320.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi Ty2] sp|Q60008|GYRB_SALTY DNA gyrase subunit B pir||AD0958 DNA gyrase chain B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gb|AAL22694.1| DNA gyrase, subunit B [Salmonella typhimurium LT2] emb|CAD03160.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO71180.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 804 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >gb|AAF61926.1| DNA gyrase B [Klebsiella pneumoniae subsp. ozaenae] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 333 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 373 >dbj|BAC06652.1| gyrase B [Escherichia coli] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06612.1| gyrase B [Escherichia coli] dbj|BAC06615.1| gyrase B [Escherichia coli] dbj|BAC06616.1| gyrase B [Escherichia coli] dbj|BAC06617.1| gyrase B [Escherichia coli] dbj|BAC06618.1| gyrase B [Escherichia coli] dbj|BAC06619.1| gyrase B [Escherichia coli] dbj|BAC06647.1| gyrase B [Escherichia coli] dbj|BAC06693.1| gyrase B [Escherichia coli] dbj|BAC06694.1| gyrase B [Escherichia coli] dbj|BAC06695.1| gyrase B [Escherichia coli] dbj|BAC06696.1| gyrase B [Escherichia coli] dbj|BAC06697.1| gyrase B [Escherichia coli] dbj|BAC06698.1| gyrase B [Escherichia coli] dbj|BAC06699.1| gyrase B [Escherichia coli] dbj|BAC06700.1| gyrase B [Escherichia coli] dbj|BAC06701.1| gyrase B [Escherichia coli] dbj|BAC06703.1| gyrase B [Escherichia coli] dbj|BAC06704.1| gyrase B [Escherichia coli] dbj|BAC06705.1| gyrase B [Escherichia coli] dbj|BAC06706.1| gyrase B [Escherichia coli] dbj|BAC06707.1| gyrase B [Escherichia coli] dbj|BAC06708.1| gyrase B [Escherichia coli] dbj|BAC06714.1| gyrase B [Escherichia coli] dbj|BAC06715.1| gyrase B [Escherichia coli] dbj|BAC06718.1| gyrase B [Escherichia coli] dbj|BAC06723.1| gyrase B [Escherichia coli] dbj|BAC06725.1| gyrase B [Escherichia coli] dbj|BAC06726.1| gyrase B [Escherichia coli] dbj|BAC06727.1| gyrase B [Escherichia coli] dbj|BAC06728.1| gyrase B [Escherichia coli] dbj|BAC06729.1| gyrase B [Escherichia coli] dbj|BAC06730.1| gyrase B [Escherichia coli] dbj|BAC06731.1| gyrase B [Escherichia coli] dbj|BAC06733.1| gyrase B [Escherichia coli] dbj|BAC06736.1| gyrase B [Escherichia coli] dbj|BAC06744.1| gyrase B [Escherichia coli] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06724.1| gyrase B [Escherichia coli] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06768.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06810.1| gyrase B [Klebsiella pneumoniae] dbj|BAC06811.1| gyrase B [Klebsiella pneumoniae] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06804.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06746.1| gyrase B [Salmonella enterica subsp. enterica serovar Chester] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06613.1| gyrase B [Escherichia coli] dbj|BAC06622.1| gyrase B [Escherichia coli] dbj|BAC06674.1| gyrase B [Escherichia coli] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06614.1| gyrase B [Escherichia coli] dbj|BAC06620.1| gyrase B [Escherichia coli] dbj|BAC06621.1| gyrase B [Escherichia coli] dbj|BAC06623.1| gyrase B [Escherichia coli] dbj|BAC06624.1| gyrase B [Escherichia coli] dbj|BAC06625.1| gyrase B [Escherichia coli] dbj|BAC06626.1| gyrase B [Escherichia coli] dbj|BAC06627.1| gyrase B [Escherichia coli] dbj|BAC06628.1| gyrase B [Escherichia coli] dbj|BAC06629.1| gyrase B [Escherichia coli] dbj|BAC06630.1| gyrase B [Escherichia coli] dbj|BAC06631.1| gyrase B [Escherichia coli] dbj|BAC06632.1| gyrase B [Escherichia coli] dbj|BAC06633.1| gyrase B [Escherichia coli] dbj|BAC06634.1| gyrase B [Escherichia coli] dbj|BAC06635.1| gyrase B [Escherichia coli] dbj|BAC06636.1| gyrase B [Escherichia coli] dbj|BAC06637.1| gyrase B [Escherichia coli] dbj|BAC06638.1| gyrase B [Escherichia coli] dbj|BAC06639.1| gyrase B [Escherichia coli] dbj|BAC06640.1| gyrase B [Escherichia coli] dbj|BAC06641.1| gyrase B [Escherichia coli] dbj|BAC06642.1| gyrase B [Escherichia coli] dbj|BAC06643.1| gyrase B [Escherichia coli] dbj|BAC06644.1| gyrase B [Escherichia coli] dbj|BAC06645.1| gyrase B [Escherichia coli] dbj|BAC06646.1| gyrase B [Escherichia coli] dbj|BAC06648.1| gyrase B [Escherichia coli] dbj|BAC06649.1| gyrase B [Escherichia coli] dbj|BAC06650.1| gyrase B [Escherichia coli] dbj|BAC06651.1| gyrase B [Escherichia coli] dbj|BAC06653.1| gyrase B [Escherichia coli] dbj|BAC06654.1| gyrase B [Escherichia coli] dbj|BAC06655.1| gyrase B [Escherichia coli] dbj|BAC06656.1| gyrase B [Escherichia coli] dbj|BAC06657.1| gyrase B [Escherichia coli] dbj|BAC06658.1| gyrase B [Escherichia coli] dbj|BAC06659.1| gyrase B [Escherichia coli] dbj|BAC06660.1| gyrase B [Escherichia coli] dbj|BAC06661.1| gyrase B [Escherichia coli] dbj|BAC06662.1| gyrase B [Escherichia coli] dbj|BAC06663.1| gyrase B [Escherichia coli] dbj|BAC06664.1| gyrase B [Escherichia coli] dbj|BAC06665.1| gyrase B [Escherichia coli] dbj|BAC06666.1| gyrase B [Escherichia coli] dbj|BAC06667.1| gyrase B [Escherichia coli] dbj|BAC06668.1| gyrase B [Escherichia coli] dbj|BAC06669.1| gyrase B [Escherichia coli] dbj|BAC06670.1| gyrase B [Escherichia coli] dbj|BAC06671.1| gyrase B [Escherichia coli] dbj|BAC06672.1| gyrase B [Escherichia coli] dbj|BAC06673.1| gyrase B [Escherichia coli] dbj|BAC06675.1| gyrase B [Escherichia coli] dbj|BAC06676.1| gyrase B [Escherichia coli] dbj|BAC06677.1| gyrase B [Escherichia coli] dbj|BAC06678.1| gyrase B [Escherichia coli] dbj|BAC06679.1| gyrase B [Escherichia coli] dbj|BAC06680.1| gyrase B [Escherichia coli] dbj|BAC06681.1| gyrase B [Escherichia coli] dbj|BAC06682.1| gyrase B [Escherichia coli] dbj|BAC06683.1| gyrase B [Escherichia coli] dbj|BAC06684.1| gyrase B [Escherichia coli] dbj|BAC06685.1| gyrase B [Escherichia coli] dbj|BAC06686.1| gyrase B [Escherichia coli] dbj|BAC06688.1| gyrase B [Escherichia coli] dbj|BAC06689.1| gyrase B [Escherichia coli] dbj|BAC06690.1| gyrase B [Escherichia coli] dbj|BAC06691.1| gyrase B [Escherichia coli] dbj|BAC06692.1| gyrase B [Escherichia coli] dbj|BAC06702.1| gyrase B [Escherichia coli] dbj|BAC06709.1| gyrase B [Escherichia coli] dbj|BAC06710.1| gyrase B [Escherichia coli] dbj|BAC06711.1| gyrase B [Escherichia coli] dbj|BAC06712.1| gyrase B [Escherichia coli] dbj|BAC06713.1| gyrase B [Escherichia coli] dbj|BAC06716.1| gyrase B [Escherichia coli] dbj|BAC06717.1| gyrase B [Escherichia coli] dbj|BAC06719.1| gyrase B [Escherichia coli] dbj|BAC06720.1| gyrase B [Escherichia coli] dbj|BAC06721.1| gyrase B [Escherichia coli] dbj|BAC06722.1| gyrase B [Escherichia coli] dbj|BAC06732.1| gyrase B [Escherichia coli] dbj|BAC06734.1| gyrase B [Escherichia coli] dbj|BAC06735.1| gyrase B [Escherichia coli] dbj|BAC06737.1| gyrase B [Escherichia coli] dbj|BAC06738.1| gyrase B [Escherichia coli] dbj|BAC06739.1| gyrase B [Escherichia coli] dbj|BAC06740.1| gyrase B [Escherichia coli] dbj|BAC06741.1| gyrase B [Escherichia coli] dbj|BAC06742.1| gyrase B [Escherichia coli] dbj|BAC06745.1| gyrase B [Escherichia coli] dbj|BAC06771.1| gyrase B [Shigella boydii] dbj|BAC06772.1| gyrase B [Shigella boydii] dbj|BAC06773.1| gyrase B [Shigella boydii] dbj|BAC06774.1| gyrase B [Shigella flexneri] dbj|BAC06775.1| gyrase B [Shigella flexneri] dbj|BAC06776.1| gyrase B [Shigella flexneri] dbj|BAC06777.1| gyrase B [Shigella flexneri] dbj|BAC06778.1| gyrase B [Shigella flexneri] dbj|BAC06779.1| gyrase B [Shigella flexneri] dbj|BAC06780.1| gyrase B [Shigella flexneri] dbj|BAC06781.1| gyrase B [Shigella flexneri] dbj|BAC06782.1| gyrase B [Shigella flexneri] dbj|BAC06783.1| gyrase B [Shigella flexneri] dbj|BAC06784.1| gyrase B [Shigella flexneri] dbj|BAC06785.1| gyrase B [Shigella flexneri] dbj|BAC06786.1| gyrase B [Shigella flexneri] dbj|BAC06787.1| gyrase B [Shigella flexneri] dbj|BAC06788.1| gyrase B [Shigella flexneri] dbj|BAC06789.1| gyrase B [Shigella sonnei] dbj|BAC06790.1| gyrase B [Shigella sonnei] dbj|BAC06791.1| gyrase B [Shigella sonnei] dbj|BAC06792.1| gyrase B [Shigella sonnei] dbj|BAC06793.1| gyrase B [Shigella sonnei] dbj|BAC06794.1| gyrase B [Shigella sonnei] dbj|BAC06795.1| gyrase B [Shigella sonnei] dbj|BAC06796.1| gyrase B [Shigella sonnei] dbj|BAC06797.1| gyrase B [Shigella sonnei] dbj|BAC06798.1| gyrase B [Shigella sonnei] dbj|BAC06799.1| gyrase B [Shigella sonnei] dbj|BAC06800.1| gyrase B [Shigella sonnei] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06805.1| gyrase B [Enterobacter cloacae] dbj|BAC06806.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >emb|CAA69221.1| subunit B of DNA gyrase [Salmonella typhimurium] Length = 804 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >dbj|BAC06743.1| gyrase B [Escherichia coli] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06803.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06802.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC57433.1| gyrase B subunit [Pseudoalteromonas piscicida] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 332 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 372 >dbj|BAC06801.1| gyrase B [Enterobacter aerogenes] Length = 390 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >ref|NP_756480.1| DNA gyrase subunit B [Escherichia coli CFT073] gb|AAN83054.1|AE016769_169 DNA gyrase subunit B [Escherichia coli CFT073] Length = 805 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >gb|AAA62050.1| DNA gyrase, subunit B Length = 804 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >ref|NP_709501.1| DNA gyrase subunit B GyrB [Shigella flexneri 2a str. 301] gb|AAN45208.1|AE015383_8 DNA gyrase subunit B GyrB [Shigella flexneri 2a str. 301] Length = 805 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >gb|AAB80844.1| DNA gyrase beta-subunit [Citrobacter sp. MAM-1] Length = 419 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >ref|NP_312661.1| DNA gyrase subunit B GyrB [Escherichia coli O157:H7] ref|NP_839178.1| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a str. 2457T] sp|P06982|GYRB_ECOLI DNA gyrase subunit B pir||B91208 DNA gyrase subunit B GyrB [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) emb|CAA27871.1| gyrase B (AA 1-804) [Escherichia coli] dbj|BAB38057.1| DNA gyrase subunit B GyrB [Escherichia coli O157:H7] gb|AAP18989.1| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a str. 2457T] Length = 804 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >ref|NP_418154.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli K12] pir||ISECTB DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Escherichia coli (strain K-12) gb|AAC76722.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli K12] Length = 804 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >dbj|BAC30803.1| unnamed protein product [Mus musculus] Length = 261 Score = 31.6 bits (70), Expect = 2.4 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >ref|NP_290332.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli O157:H7 EDL933] pir||D86054 hypothetical protein gyrB [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gb|AAG58896.1|AE005601_2 DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli O157:H7 EDL933] Length = 804 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >ref|NP_062599.1| DNA gyrase, subunit B [Vibrio cholerae] sp|Q9KVX3|GYRB_VIBCH DNA gyrase subunit B pir||H82376 DNA gyrase, chain B VC0015 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gb|AAF93193.1| DNA gyrase, subunit B [Vibrio cholerae] Length = 805 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >dbj|BAB87019.1| DNA gyrase subunit B [Serratia rubidaea] Length = 390 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRRNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >ref|NP_759958.1| DNA gyrase, subunit B [Vibrio vulnificus CMCP6] gb|AAO09485.1|AE016800_90 DNA gyrase, subunit B [Vibrio vulnificus CMCP6] Length = 805 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >ref|NP_609637.2| CG16970-PA [Drosophila melanogaster] gb|AAF53283.3| CG16970-PA [Drosophila melanogaster] Length = 708 Score = 31.6 bits (70), Expect = 2.5 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 83 SQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDP 115 S +H P + +G T +GG PG AP PP P Sbjct: 198 SWYHLPSTSAHIYIGTTSSGGVPG-SAPYPPYP 229 >gb|AAD32643.1|AF136383_1 gyrase B [Photobacterium angustum] Length = 419 Score = 31.2 bits (69), Expect = 2.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 386 >gb|AAB80824.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 4/44 (9%) Query: 26 NRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 NR+N LP+ G VEE F K + + + +A VI AI C Sbjct: 346 NRKNQAILPLKGKILNVEEARFEKML----FFQEVATVITAIGC 385 >gb|AAB80843.1| DNA gyrase beta-subunit [Citrobacter sp. JYME-1] Length = 419 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA inducible protein; TPA inducible gene-1; PC2-glutamine-rich-associated protein; trinucleotide repeat containing 7 [Homo sapiens] gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Homo sapiens] Length = 748 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens] Length = 746 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] Length = 811 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 30 ETDWRSTAFRQKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 84 Query: 63 VI 64 +I Sbjct: 85 LI 86 >gb|AAB80815.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 31.2 bits (69), Expect = 2.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >emb|CAB57885.1| DNA gyrase B subunit [Photobacterium damselae subsp. piscicida] Length = 682 Score = 31.2 bits (69), Expect = 2.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 339 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 379 >emb|CAB57876.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae] Length = 676 Score = 31.2 bits (69), Expect = 3.0 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 332 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 372 >pir||T30322 type I site-specific deoxyribonuclease (EC 3.1.21.3) LldI chain hsdR - Lactococcus lactis plasmid pIL2614 gb|AAC15896.1| type IC restriction subunit [Lactococcus lactis] Length = 1025 Score = 31.2 bits (69), Expect = 3.0 Identities = 14/30 (46%), Positives = 21/30 (69%) Query: 35 VPGDARQVEEYVFAKCMSKDEYMRTIAKVI 64 +PGDA Q EE + A+ KDE++RT+ + I Sbjct: 514 LPGDALQQEELLPAELYEKDEHIRTMLQKI 543 >sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a) Length = 788 Score = 31.2 bits (69), Expect = 3.0 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >gb|AAC24008.1| DNA gyrase subunit B [Citrobacter freundii] Length = 138 Score = 31.2 bits (69), Expect = 3.0 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 94 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 134 >ref|NP_057913.1| complement component 6 [Mus musculus] gb|AAF14577.1|AF184900_1 complement component 6 [Mus musculus] Length = 769 Score = 30.8 bits (68), Expect = 3.3 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >gb|AAH11251.1| complement component 6 [Mus musculus] Length = 769 Score = 30.8 bits (68), Expect = 3.3 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >dbj|BAB69454.1| gyrase subunitB [Salmonella paratyphi] Length = 199 Score = 30.8 bits (68), Expect = 3.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 60 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 100 >gb|AAB59433.1| complement component C6 Length = 491 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >gb|AAB80830.1| DNA gyrase beta-subunit [Shewanella algae] Length = 419 Score = 30.8 bits (68), Expect = 3.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >emb|CAA92320.1| GyrB [Salmonella typhimurium] Length = 391 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 36 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 76 >ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] Length = 501 Score = 30.8 bits (68), Expect = 4.2 Identities = 19/85 (22%), Positives = 35/85 (40%) Query: 5 DWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI 64 D P ++RL+ + R RQ + P + + E F +++++Y + K Sbjct: 185 DPAQPHSYVRAMERLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQ 244 Query: 65 NAINCNSKSAAVPSVLQPSQFHSPP 89 + VPS +QFH+ P Sbjct: 245 EYVRSGDIFQVVPSQRLCTQFHARP 269 >emb|CAB60271.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae] Length = 324 Score = 30.4 bits (67), Expect = 4.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 169 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 209 >emb|CAD57659.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57631.1| DNA gyrase subunit B [Vibrio splendidus] Length = 191 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >emb|CAD57639.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >emb|CAD57630.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57656.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57637.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57638.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57640.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57647.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 30.4 bits (67), Expect = 4.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >emb|CAD57663.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57632.1| DNA gyrase subunit B [Vibrio splendidus] Length = 191 Score = 30.4 bits (67), Expect = 4.5 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >emb|CAD57628.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57633.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57634.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57635.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57636.1| DNA gyrase subunit B [Vibrio splendidus] Length = 190 Score = 30.4 bits (67), Expect = 4.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >emb|CAD57660.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57661.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57662.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57646.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 30.4 bits (67), Expect = 4.7 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >ref|NP_778415.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] gb|AAO28064.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] Length = 491 Score = 30.4 bits (67), Expect = 4.9 Identities = 19/85 (22%), Positives = 35/85 (40%) Query: 5 DWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI 64 D P ++RL+ + R RQ + P + + E F +++++Y + K Sbjct: 175 DPAQPHSYVRAMKRLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQ 234 Query: 65 NAINCNSKSAAVPSVLQPSQFHSPP 89 + VPS +QFH+ P Sbjct: 235 EYVRSGDIFQVVPSQRLCTQFHARP 259 >emb|CAD57657.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57658.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57664.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57641.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57642.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57643.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57644.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57645.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57648.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 30.4 bits (67), Expect = 4.9 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >emb|CAD57629.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 30.4 bits (67), Expect = 5.0 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] Length = 501 Score = 30.4 bits (67), Expect = 5.0 Identities = 17/74 (22%), Positives = 33/74 (43%) Query: 16 IQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAA 75 ++RL+ + R RQ + P + + E F +++++Y + K + Sbjct: 196 MERLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQV 255 Query: 76 VPSVLQPSQFHSPP 89 VPS +QFH+ P Sbjct: 256 VPSQRLCTQFHARP 269 >gb|EAA26937.1| hypothetical protein [Neurospora crassa] Length = 1519 Score = 30.0 bits (66), Expect = 5.6 Identities = 21/78 (26%), Positives = 32/78 (40%), Gaps = 10/78 (12%) Query: 47 FAKCMSKDEYMRTIAKVINAINCNSKSAAVPS--VLQPSQFHSPPCTTAALLGNTPAGG- 103 + + S E R + +N N S+ PS + P++ PP A G + G Sbjct: 681 YQQASSSSELSRPVDAGTIDVNSNPPSSGAPSRTSVSPTRSPLPPGLAATAAGGSVHAGV 740 Query: 104 -------TPGYRAPVPPD 114 TPG R+P PP+ Sbjct: 741 ESAHEVLTPGTRSPAPPN 758 >pir||T15824 hypothetical protein C52E12.4 - Caenorhabditis elegans Length = 1238 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 1/52 (1%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAP-VPPDPQPT 118 N + KS+ VLQ F P TT A + G+RAP +PP PQ T Sbjct: 601 NKHGKSSLWNFVLQHQDFEKPGLTTRASSTSMLTPAIRGFRAPSLPPAPQST 652 >emb|CAC24685.1| possible SNF2-related helicase [Leishmania major] Length = 1252 Score = 30.0 bits (66), Expect = 6.0 Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 5/108 (4%) Query: 7 PSPKFREHVIQRL---EPELARNRQNAPNLPVPGDARQVEEYVFAKCMSK-DEYMRTIAK 62 PSP+ + +L E EL R L D RQ AK + + DE R A Sbjct: 94 PSPRRVSDIRFQLNAAERELKRADAAVQKLQKEVDQRQAARLAEAKRLEQEDEAERAAAD 153 Query: 63 VINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAP 110 V + NS + P L S PP ++ G AGG+ +P Sbjct: 154 VTRVVRANSTTGR-PVPLASSSSTIPPRANTSVNGGALAGGSLSASSP 200 >pir||A34372 complement C6 precursor [validated] - human gb|AAA51860.1| complement component C6 precursor peptide Length = 934 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >ref|NP_000056.1| Complement component 6 precursor [Homo sapiens] sp|P13671|CO6_HUMAN Complement component C6 precursor gb|AAA59668.1| completement component C6 emb|CAA50994.1| complement component C6 [Homo sapiens] gb|AAH35723.1| complement component 6 [Homo sapiens] Length = 934 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >ref|NP_495437.2| uDENN domain and DENN domain and dDENN domain and RUN domain and PLAT/LH2 domain containing protein family member [Caenorhabditis elegans] gb|AAA93455.3| Hypothetical protein C52E12.4 [Caenorhabditis elegans] Length = 1487 Score = 30.0 bits (66), Expect = 6.8 Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 1/52 (1%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAP-VPPDPQPT 118 N + KS+ VLQ F P TT A + G+RAP +PP PQ T Sbjct: 824 NKHGKSSLWNFVLQHQDFEKPGLTTRASSTSMLTPAIRGFRAPSLPPAPQST 875 >ref|ZP_00084216.1| hypothetical protein [Pseudomonas fluorescens PfO-1] Length = 441 Score = 30.0 bits (66), Expect = 6.8 Identities = 21/71 (29%), Positives = 28/71 (38%) Query: 33 LPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTT 92 LPV D +EY +K T+ KV + N AA S L P F T Sbjct: 114 LPVNSDGEARDEYTKVGGAAKVRAFDTVVKVGDVFPANPVVAAGDSRLLPESFRGVTATN 173 Query: 93 AALLGNTPAGG 103 ++ G + GG Sbjct: 174 TSIEGLSIQGG 184 >ref|NP_297503.1| anthranilate synthase component I [Xylella fastidiosa 9a5c] pir||A82835 anthranilate synthase component I XF0210 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83023.1|AE003874_7 anthranilate synthase component I [Xylella fastidiosa 9a5c] Length = 487 Score = 30.0 bits (66), Expect = 6.9 Identities = 18/85 (21%), Positives = 35/85 (41%) Query: 5 DWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI 64 D P ++RL+ + R RQ + P + + E F +++++Y + + Sbjct: 171 DPAQPHAYARAVERLDVLIYRLRQGGVDYPHSHISEVINEEDFHSSLTREQYHAVVRQAQ 230 Query: 65 NAINCNSKSAAVPSVLQPSQFHSPP 89 + VPS +QFH+ P Sbjct: 231 EYVRSGDIFQVVPSQRLCTQFHARP 255 >sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/62 (25%), Positives = 33/62 (52%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 240 2e-63 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 233 5e-61 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 198 1e-50 Sequences not found previously or not previously below threshold: ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] >gi|5052530... 41 0.003 gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein... 35 0.13 dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 35 0.23 ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associate... 35 0.23 gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 35 0.23 sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 35 0.27 gb|AAB80833.1| DNA gyrase beta-subunit [Shewanella algae] 34 0.29 gb|AAD32646.1|AF136386_1 gyrase B [Photobacterium phosphoreum] 34 0.30 gb|AAF21007.1|AF208256_1 DNA gyrase subunit beta [Aeromonas hydr... 34 0.57 gb|AAF21006.1|AF208255_1 DNA gyrase subunit beta [Aeromonas hydr... 34 0.57 gb|AAF21001.1|AF208250_1 DNA gyrase subunit beta [Aeromonas hydr... 34 0.57 dbj|BAC30803.1| unnamed protein product [Mus musculus] 34 0.60 ref|NP_057913.1| complement component 6 [Mus musculus] >gi|65030... 34 0.60 gb|AAH11251.1| complement component 6 [Mus musculus] 34 0.60 gb|AAF21003.1|AF208252_1 DNA gyrase subunit beta [Aeromonas hydr... 33 0.67 sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associ... 33 0.71 gb|AAB63492.1| gyrase B subunit [Alteromonas macleodii] 33 0.93 gb|AAB63505.1| gyrase B subunit [Pseudoalteromonas peptidolytica] 33 0.97 gb|AAF21009.1|AF208258_1 DNA gyrase subunit beta [Aeromonas hydr... 33 1.0 ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associate... 33 1.1 ref|NP_495437.2| uDENN domain and DENN domain and dDENN domain ... 32 1.1 pir||T15824 hypothetical protein C52E12.4 - Caenorhabditis elegans 32 1.1 ref|ZP_00123560.1| hypothetical protein [Haemophilus somnus 129PT] 32 1.2 emb|CAC24685.1| possible SNF2-related helicase [Leishmania major] 32 1.2 gb|AAL01490.1| gyrase B [Shewanella sp. CL256/73] 32 1.3 dbj|BAB87022.1| DNA gyrase subunit B [Vibrio diazotrophicus] 32 1.3 gb|AAB63498.1| gyrase B subunit [Pseudoalteromonas espejiana] 32 1.3 gb|AAB80834.1| DNA gyrase beta-subunit [Shewanella algae] 32 1.3 dbj|BAC06687.1| gyrase B [Escherichia coli] 32 1.3 gb|AAD32647.1|AF136391_1 gyrase B [Shewanella sp. ANA-3] 32 1.3 gb|AAC24008.1| DNA gyrase subunit B [Citrobacter freundii] 32 1.3 emb|CAA69221.1| subunit B of DNA gyrase [Salmonella typhimurium] 32 1.3 gb|AAL01493.1| gyrase B [Shewanella sp. 184] 32 1.3 emb|CAD57630.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 32 1.3 gb|AAF61927.1| DNA gyrase B [Klebsiella pneumoniae] 32 1.3 ref|NP_407516.1| DNA gyrase subunit B [Yersinia pestis] >gi|2529... 32 1.3 dbj|BAB69455.1| gyrase subunitB [Salmonella typhi] 32 1.3 ref|NP_290332.1| DNA gyrase subunit B, type II topoisomerase, AT... 32 1.3 gb|AAB80840.1| DNA gyrase beta-subunit [Shewanella sp. DLM-7] 32 1.3 dbj|BAC06807.1| gyrase B [Enterobacter cloacae] 32 1.3 ref|NP_458107.1| DNA gyrase subunit B [Salmonella enterica subsp... 32 1.3 gb|AAB80842.1| DNA gyrase beta-subunit [Citrobacter sp. AQ-2] 32 1.3 gb|AAB63504.1| gyrase B subunit [Pseudoalteromonas undina] 32 1.3 dbj|BAC06814.1| gyrase B [Yersinia enterocolitica] >gi|22091048|... 32 1.3 gb|AAB63502.1| gyrase B subunit [Pseudoalteromonas rubra] 32 1.3 dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea] 32 1.3 emb|CAA92320.1| GyrB [Salmonella typhimurium] 32 1.3 gb|AAB80822.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.3 gb|AAC03529.1| gyrase subunit B [Shewanella oneidensis] 32 1.3 gb|AAB92593.1| gyrase beta subunit [Shewanella pealeana] 32 1.3 gb|AAL01491.1| gyrase B [bacterium PV-4] 32 1.3 dbj|BAC06809.1| gyrase B [Klebsiella oxytoca] 32 1.3 gb|AAB80812.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.3 dbj|BAB69454.1| gyrase subunitB [Salmonella paratyphi] 32 1.3 dbj|BAC06743.1| gyrase B [Escherichia coli] 32 1.3 dbj|BAC06801.1| gyrase B [Enterobacter aerogenes] 32 1.3 ref|NP_062599.1| DNA gyrase, subunit B [Vibrio cholerae] >gi|113... 32 1.3 dbj|BAB87017.1| DNA gyrase subunit B [Serratia marcescens] 32 1.3 dbj|BAC06803.1| gyrase B [Enterobacter cloacae] 32 1.3 gb|AAF61926.1| DNA gyrase B [Klebsiella pneumoniae subsp. ozaenae] 32 1.3 emb|CAD57628.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 32 1.3 gb|AAC03530.1| gyrase subunit B [Shewanella pealeana] 32 1.3 dbj|BAC10605.1| DNA gyrase B subunit [Shewanella schlegeliana] >... 32 1.3 gb|AAB63501.1| gyrase B subunit [Pseudoalteromonas nigrifaciens] 32 1.3 ref|NP_671401.1| DNA gyrase subunit B, type II topoisomerase [Ye... 32 1.3 dbj|BAC06747.1| gyrase B [Salmonella enterica subsp. enterica se... 32 1.3 gb|AAL01494.1| gyrase B [bacterium W3 18-1] 32 1.3 dbj|BAA86938.1| gyrase B subunit [Vibrio hollisae] 32 1.3 dbj|BAC06812.1| gyrase B [Yersinia enterocolitica] >gi|22091044|... 32 1.3 gb|AAB63496.1| gyrase B subunit [Pseudoalteromonas carrageenovora] 32 1.3 gb|AAB63500.1| gyrase B subunit [Pseudoalteromonas luteoviolacea] 32 1.3 emb|CAD57659.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 32 1.3 dbj|BAC06652.1| gyrase B [Escherichia coli] 32 1.3 gb|AAC03527.1| gyrase subunit B [Shewanella oneidensis] 32 1.3 gb|AAB80823.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.3 gb|AAB63503.1| gyrase B subunit [Pseudoalteromonas tetraodonis] 32 1.3 ref|NP_312661.1| DNA gyrase subunit B GyrB [Escherichia coli O15... 32 1.3 gb|AAB80843.1| DNA gyrase beta-subunit [Citrobacter sp. JYME-1] 32 1.3 ref|NP_759958.1| DNA gyrase, subunit B [Vibrio vulnificus CMCP6]... 32 1.3 gb|AAB80824.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.3 dbj|BAC10602.1| DNA gyrase B subunit [Shewanella marinintestina]... 32 1.3 dbj|BAC10603.1| DNA gyrase B subunit [Shewanella marinintestina] 32 1.3 gb|AAL01492.1| gyrase B [Shewanella baltica] 32 1.3 gb|AAC38147.1| gyrase B subunit [Vibrio parahaemolyticus] 32 1.3 dbj|BAB87025.1| DNA gyrase subunit B [Listonella pelagia] 32 1.3 gb|AAF61925.1| DNA gyrase B [Klebsiella pneumoniae subsp. pneumo... 32 1.3 emb|CAD57660.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 32 1.3 dbj|BAC06757.1| gyrase B [Salmonella paratyphi] >gi|22090934|dbj... 32 1.3 gb|AAB63499.1| gyrase B subunit [Pseudoalteromonas haloplanktis ... 32 1.3 dbj|BAC06802.1| gyrase B [Enterobacter cloacae] 32 1.3 gb|AAB63497.1| gyrase B subunit [Pseudoalteromonas citrea] 32 1.3 emb|CAD57663.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 32 1.3 dbj|BAC06612.1| gyrase B [Escherichia coli] >gi|22090648|dbj|BAC... 32 1.3 dbj|BAB87023.1| DNA gyrase subunit B [Vibrio gazogenes] 32 1.3 emb|CAD56007.1| DNA gyrase [Providencia stuartii] 32 1.3 dbj|BAC06724.1| gyrase B [Escherichia coli] 32 1.3 gb|AAA62050.1| DNA gyrase, subunit B 32 1.3 gb|AAC03528.1| gyrase subunit B [Shewanella oneidensis] 32 1.3 ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR... 32 1.3 dbj|BAC06808.1| gyrase B [Enterobacter cloacae] 32 1.3 ref|NP_756480.1| DNA gyrase subunit B [Escherichia coli CFT073] ... 32 1.3 dbj|BAC06768.1| gyrase B [Salmonella enterica subsp. enterica se... 32 1.3 emb|CAD57629.1| DNA gyrase subunit B [Vibrio splendidus] 32 1.3 gb|AAB63494.1| gyrase B subunit [Pseudoalteromonas atlantica] 32 1.3 ref|NP_709501.1| DNA gyrase subunit B GyrB [Shigella flexneri 2a... 32 1.3 dbj|BAC10607.1| DNA gyrase B subunit [Shewanella sairae] 32 1.3 dbj|BAC57433.1| gyrase B subunit [Pseudoalteromonas piscicida] 32 1.3 dbj|BAC06810.1| gyrase B [Klebsiella pneumoniae] >gi|22091040|db... 32 1.3 gb|AAB80830.1| DNA gyrase beta-subunit [Shewanella algae] 32 1.3 dbj|BAC06804.1| gyrase B [Enterobacter cloacae] 32 1.3 ref|NP_796393.1| DNA gyrase, subunit B [Vibrio parahaemolyticus ... 32 1.3 gb|AAB80844.1| DNA gyrase beta-subunit [Citrobacter sp. MAM-1] 32 1.3 ref|NP_418154.1| DNA gyrase subunit B, type II topoisomerase, AT... 32 1.3 gb|AAB92595.1| gyrase beta subunit [Shewanella frigidimarina] 32 1.3 dbj|BAC06746.1| gyrase B [Salmonella enterica subsp. enterica se... 32 1.3 gb|AAB80815.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.3 gb|AAB80814.1| DNA gyrase beta-subunit [Shewanella putrefaciens] 32 1.3 emb|CAD57639.1| DNA gyrase subunit B [Vibrio splendidus] 32 1.3 dbj|BAC06755.1| gyrase B [Salmonella enterica subsp. enterica se... 32 1.3 dbj|BAB87021.1| DNA gyrase subunit B [Vibrio campbellii] 32 1.3 emb|CAD57657.1| DNA gyrase subunit B [Vibrio splendidus] >gi|258... 32 1.3 dbj|BAC06613.1| gyrase B [Escherichia coli] >gi|22090662|dbj|BAC... 32 1.3 gb|AAB63495.1| gyrase B subunit [Pseudoalteromonas aurantia] 32 1.3 dbj|BAC06614.1| gyrase B [Escherichia coli] >gi|22090658|dbj|BAC... 32 1.3 dbj|BAC06805.1| gyrase B [Enterobacter cloacae] >gi|22091030|dbj... 32 1.3 gb|AAD30293.1|AF139115_1 gyrase B subunit [Pseudoalteromonas pis... 32 1.3 dbj|BAB87019.1| DNA gyrase subunit B [Serratia rubidaea] 32 1.4 emb|CAB57876.1| DNA gyrase B subunit [Photobacterium damselae su... 32 1.4 gb|AAD32644.1|AF136384_1 gyrase B [Photobacterium damselae subsp... 32 1.4 emb|CAB60271.1| DNA gyrase B subunit [Photobacterium damselae su... 32 1.4 gb|AAD32645.1|AF136385_1 gyrase B [Photobacterium leiognathi] 32 1.4 emb|CAB57885.1| DNA gyrase B subunit [Photobacterium damselae su... 32 1.4 gb|AAD32643.1|AF136383_1 gyrase B [Photobacterium angustum] 32 1.4 pir||A34372 complement C6 precursor [validated] - human >gi|1797... 32 1.4 gb|AAB59433.1| complement component C6 32 1.4 ref|NP_000056.1| Complement component 6 precursor [Homo sapiens]... 32 1.4 ref|NP_500100.1| Putative protein family member, nematode specif... 32 1.5 pir||T30322 type I site-specific deoxyribonuclease (EC 3.1.21.3)... 32 1.8 ref|NP_650035.1| CG14696-PA [Drosophila melanogaster] >gi|729938... 32 1.9 gb|AAD02075.3| subtilisin-like protease C1 [Glycine max] 32 2.0 ref|XP_294521.1| hypothetical protein XP_294521 [Homo sapiens] 32 2.1 ref|NP_841214.1| hypothetical protein [Nitrosomonas europaea ATC... 32 2.1 gb|AAF21002.1|AF208251_1 DNA gyrase subunit beta [Aeromonas hydr... 31 2.5 ref|NP_777649.1| putative DNA gyrase subunit b [Buchnera aphidic... 31 2.6 ref|NP_775381.1| dystroglycan 1 [Danio rerio] >gi|21902309|gb|AA... 31 2.8 ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] 31 3.1 ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] 31 3.6 ref|NP_778415.1| anthranilate synthase component I [Xylella fast... 31 3.7 ref|ZP_00107232.1| hypothetical protein [Nostoc punctiforme] 30 4.5 ref|NP_297503.1| anthranilate synthase component I [Xylella fast... 30 5.2 ref|NP_497144.1| TAZ zinc finger family member [Caenorhabditis e... 30 5.9 ref|NP_823711.1| hypothetical protein [Streptomyces avermitilis ... 30 6.1 emb|CAA77176.1| Bassoon protein [Homo sapiens] 29 9.9 ref|XP_286286.1| hypothetical protein XP_286286 [Mus musculus] 29 9.9 ref|NP_003449.1| bassoon; zinc finger protein 231; neuronal doub... 29 9.9 >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 240 bits (613), Expect = 2e-63 Identities = 124/124 (100%), Positives = 124/124 (100%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 Query: 121 QARN 124 QARN Sbjct: 121 QARN 124 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 233 bits (593), Expect = 5e-61 Identities = 121/124 (97%), Positives = 121/124 (97%), Gaps = 3/124 (2%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA GNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA---GNTPAGGTPGYRAPVPPDPQPTSA 117 Query: 121 QARN 124 QARN Sbjct: 118 QARN 121 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 198 bits (503), Expect = 1e-50 Identities = 104/124 (83%), Positives = 104/124 (83%), Gaps = 20/124 (16%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA DPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA--------------------DPQPTSA 100 Query: 121 QARN 124 QARN Sbjct: 101 QARN 104 >ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] gb|AAD38595.1|AF145620_1 BcDNA.GH03922 [Drosophila melanogaster] gb|AAF51490.1| CG4184-PA [Drosophila melanogaster] Length = 749 Score = 41.3 bits (95), Expect = 0.003 Identities = 22/60 (36%), Positives = 35/60 (57%), Gaps = 5/60 (8%) Query: 4 EDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKV 63 EDW S KFR++VI ++ L N Q+ +A +E ++F K +KDEY+ +AK+ Sbjct: 3 EDWQSQKFRQNVISKIHDLLPPNAQDQTK-----NAGVMENHIFRKSRTKDEYLGLVAKL 57 >gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Danio rerio] Length = 809 Score = 35.5 bits (80), Expect = 0.13 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 20/112 (17%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 Query: 63 -VINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPP 113 +I+ + + K+ P + Q N P GG PG P PP Sbjct: 62 LIIHFRDIHKKAQGGPDPINALQ-------------NLP-GGVPGVIGPRPP 99 >dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] Length = 811 Score = 34.7 bits (78), Expect = 0.23 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 30 ETDWRSTAFRQKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 84 Query: 63 VI 64 +I Sbjct: 85 LI 86 >ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA inducible protein; TPA inducible gene-1; PC2-glutamine-rich-associated protein; trinucleotide repeat containing 7 [Homo sapiens] gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Homo sapiens] Length = 748 Score = 34.7 bits (78), Expect = 0.23 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens] Length = 746 Score = 34.7 bits (78), Expect = 0.23 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a) Length = 788 Score = 34.7 bits (78), Expect = 0.27 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >gb|AAB80833.1| DNA gyrase beta-subunit [Shewanella algae] Length = 419 Score = 34.3 bits (77), Expect = 0.29 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G +VE+ F K +S E +A INA+ C Sbjct: 345 RNRKNQAILPLKGKIFKVEKARFDKMLSSQE----VATXINALGC 385 >gb|AAD32646.1|AF136386_1 gyrase B [Photobacterium phosphoreum] Length = 420 Score = 34.3 bits (77), Expect = 0.30 Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E +A +I A+ C + P L+ Sbjct: 347 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----LATLITAMGCGIGRDEYNPDKLRLP 402 Query: 84 QFH 86 Q+H Sbjct: 403 QYH 405 >gb|AAF21007.1|AF208256_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 384 Score = 33.6 bits (75), Expect = 0.57 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRVS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >gb|AAF21006.1|AF208255_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 386 Score = 33.6 bits (75), Expect = 0.57 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRVS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >gb|AAF21001.1|AF208250_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 387 Score = 33.6 bits (75), Expect = 0.57 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRVS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >dbj|BAC30803.1| unnamed protein product [Mus musculus] Length = 261 Score = 33.6 bits (75), Expect = 0.60 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >ref|NP_057913.1| complement component 6 [Mus musculus] gb|AAF14577.1|AF184900_1 complement component 6 [Mus musculus] Length = 769 Score = 33.6 bits (75), Expect = 0.60 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >gb|AAH11251.1| complement component 6 [Mus musculus] Length = 769 Score = 33.6 bits (75), Expect = 0.60 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >gb|AAF21003.1|AF208252_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 387 Score = 33.2 bits (74), Expect = 0.67 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRLS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 33.2 bits (74), Expect = 0.71 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRG 105 >gb|AAB63492.1| gyrase B subunit [Alteromonas macleodii] Length = 419 Score = 32.8 bits (73), Expect = 0.93 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAVGC 385 >gb|AAB63505.1| gyrase B subunit [Pseudoalteromonas peptidolytica] Length = 420 Score = 32.8 bits (73), Expect = 0.97 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKASFDKMLSSQE----VATLITALGC 386 >gb|AAF21009.1|AF208258_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 386 Score = 32.8 bits (73), Expect = 1.0 Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S R + +I A+ C + P ++ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISS----REVGTLITALGCGIGRDEYNPDKMRVS 379 Query: 84 QFH 86 Q H Sbjct: 380 QHH 382 >ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associated protein [Mus musculus] gb|AAK58424.1|AF328770_1 PC2-glutamine-rich-associated protein [Mus musculus] Length = 667 Score = 32.8 bits (73), Expect = 1.1 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + + + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIEDAMRK-----AGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRG 105 >ref|NP_495437.2| uDENN domain and DENN domain and dDENN domain and RUN domain and PLAT/LH2 domain containing protein family member [Caenorhabditis elegans] gb|AAA93455.3| Hypothetical protein C52E12.4 [Caenorhabditis elegans] Length = 1487 Score = 32.4 bits (72), Expect = 1.1 Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 1/52 (1%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAP-VPPDPQPT 118 N + KS+ VLQ F P TT A + G+RAP +PP PQ T Sbjct: 824 NKHGKSSLWNFVLQHQDFEKPGLTTRASSTSMLTPAIRGFRAPSLPPAPQST 875 >pir||T15824 hypothetical protein C52E12.4 - Caenorhabditis elegans Length = 1238 Score = 32.4 bits (72), Expect = 1.1 Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 1/52 (1%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAP-VPPDPQPT 118 N + KS+ VLQ F P TT A + G+RAP +PP PQ T Sbjct: 601 NKHGKSSLWNFVLQHQDFEKPGLTTRASSTSMLTPAIRGFRAPSLPPAPQST 652 >ref|ZP_00123560.1| hypothetical protein [Haemophilus somnus 129PT] Length = 807 Score = 32.4 bits (72), Expect = 1.2 Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNRQN LP+ G VE+ F K +S E + +I A+ C Sbjct: 440 RNRQNQAILPLKGKILNVEKARFDKMLSSQE----VGTLITALGC 480 >emb|CAC24685.1| possible SNF2-related helicase [Leishmania major] Length = 1252 Score = 32.4 bits (72), Expect = 1.2 Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 5/108 (4%) Query: 7 PSPKFREHVIQRL---EPELARNRQNAPNLPVPGDARQVEEYVFAKCMSK-DEYMRTIAK 62 PSP+ + +L E EL R L D RQ AK + + DE R A Sbjct: 94 PSPRRVSDIRFQLNAAERELKRADAAVQKLQKEVDQRQAARLAEAKRLEQEDEAERAAAD 153 Query: 63 VINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAP 110 V + NS + P L S PP ++ G AGG+ +P Sbjct: 154 VTRVVRANSTTGR-PVPLASSSSTIPPRANTSVNGGALAGGSLSASSP 200 >gb|AAL01490.1| gyrase B [Shewanella sp. CL256/73] Length = 399 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 334 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 374 >dbj|BAB87022.1| DNA gyrase subunit B [Vibrio diazotrophicus] Length = 467 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 408 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 448 >gb|AAB63498.1| gyrase B subunit [Pseudoalteromonas espejiana] Length = 423 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >gb|AAB80834.1| DNA gyrase beta-subunit [Shewanella algae] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAC06687.1| gyrase B [Escherichia coli] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAD32647.1|AF136391_1 gyrase B [Shewanella sp. ANA-3] Length = 418 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAC24008.1| DNA gyrase subunit B [Citrobacter freundii] Length = 138 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 94 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 134 >emb|CAA69221.1| subunit B of DNA gyrase [Salmonella typhimurium] Length = 804 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >gb|AAL01493.1| gyrase B [Shewanella sp. 184] Length = 393 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 332 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 372 >emb|CAD57630.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57656.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57637.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57638.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57640.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57647.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >gb|AAF61927.1| DNA gyrase B [Klebsiella pneumoniae] Length = 396 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 333 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 373 >ref|NP_407516.1| DNA gyrase subunit B [Yersinia pestis] pir||AD0497 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) chain B [imported] - Yersinia pestis (strain CO92) emb|CAC93544.1| DNA gyrase subunit B [Yersinia pestis CO92] Length = 804 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >dbj|BAB69455.1| gyrase subunitB [Salmonella typhi] Length = 152 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 59 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 99 >ref|NP_290332.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli O157:H7 EDL933] pir||D86054 hypothetical protein gyrB [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gb|AAG58896.1|AE005601_2 DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli O157:H7 EDL933] Length = 804 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >gb|AAB80840.1| DNA gyrase beta-subunit [Shewanella sp. DLM-7] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAC06807.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >ref|NP_458107.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_462735.1| DNA gyrase, subunit B (type II topoisomerase) [Salmonella typhimurium LT2] ref|NP_807320.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi Ty2] sp|Q60008|GYRB_SALTY DNA gyrase subunit B pir||AD0958 DNA gyrase chain B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gb|AAL22694.1| DNA gyrase, subunit B [Salmonella typhimurium LT2] emb|CAD03160.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO71180.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 804 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >gb|AAB80842.1| DNA gyrase beta-subunit [Citrobacter sp. AQ-2] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAB63504.1| gyrase B subunit [Pseudoalteromonas undina] Length = 423 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >dbj|BAC06814.1| gyrase B [Yersinia enterocolitica] dbj|BAC06815.1| gyrase B [Yersinia enterocolitica] dbj|BAC06816.1| gyrase B [Yersinia enterocolitica] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB63502.1| gyrase B subunit [Pseudoalteromonas rubra] Length = 423 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea] Length = 806 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 438 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 478 >emb|CAA92320.1| GyrB [Salmonella typhimurium] Length = 391 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 36 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 76 >gb|AAB80822.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAC03529.1| gyrase subunit B [Shewanella oneidensis] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAB92593.1| gyrase beta subunit [Shewanella pealeana] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAL01491.1| gyrase B [bacterium PV-4] Length = 392 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 334 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 374 >dbj|BAC06809.1| gyrase B [Klebsiella oxytoca] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB80812.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAB69454.1| gyrase subunitB [Salmonella paratyphi] Length = 199 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 60 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 100 >dbj|BAC06743.1| gyrase B [Escherichia coli] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06801.1| gyrase B [Enterobacter aerogenes] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >ref|NP_062599.1| DNA gyrase, subunit B [Vibrio cholerae] sp|Q9KVX3|GYRB_VIBCH DNA gyrase subunit B pir||H82376 DNA gyrase, chain B VC0015 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gb|AAF93193.1| DNA gyrase, subunit B [Vibrio cholerae] Length = 805 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >dbj|BAB87017.1| DNA gyrase subunit B [Serratia marcescens] Length = 389 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 330 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 370 >dbj|BAC06803.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAF61926.1| DNA gyrase B [Klebsiella pneumoniae subsp. ozaenae] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 333 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 373 >emb|CAD57628.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57633.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57634.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57635.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57636.1| DNA gyrase subunit B [Vibrio splendidus] Length = 190 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >gb|AAC03530.1| gyrase subunit B [Shewanella pealeana] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAC10605.1| DNA gyrase B subunit [Shewanella schlegeliana] dbj|BAC10606.1| DNA gyrase B subunit [Shewanella schlegeliana] Length = 377 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 364 >gb|AAB63501.1| gyrase B subunit [Pseudoalteromonas nigrifaciens] Length = 423 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >ref|NP_671401.1| DNA gyrase subunit B, type II topoisomerase [Yersinia pestis KIM] gb|AAM87652.1|AE014012_9 DNA gyrase subunit B, type II topoisomerase [Yersinia pestis KIM] Length = 805 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >dbj|BAC06747.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport] dbj|BAC06748.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06749.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06750.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06751.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06752.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis] dbj|BAC06753.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar] dbj|BAC06754.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport] dbj|BAC06760.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B] dbj|BAC06761.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson] dbj|BAC06762.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06763.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06764.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06765.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06766.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06767.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] dbj|BAC06769.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium] dbj|BAC06770.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAL01494.1| gyrase B [bacterium W3 18-1] Length = 406 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 334 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 374 >dbj|BAA86938.1| gyrase B subunit [Vibrio hollisae] Length = 420 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >dbj|BAC06812.1| gyrase B [Yersinia enterocolitica] dbj|BAC06813.1| gyrase B [Yersinia enterocolitica] dbj|BAC06817.1| gyrase B [Yersinia enterocolitica] dbj|BAC06818.1| gyrase B [Yersinia enterocolitica] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB63496.1| gyrase B subunit [Pseudoalteromonas carrageenovora] Length = 423 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >gb|AAB63500.1| gyrase B subunit [Pseudoalteromonas luteoviolacea] Length = 420 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >emb|CAD57659.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57631.1| DNA gyrase subunit B [Vibrio splendidus] Length = 191 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >dbj|BAC06652.1| gyrase B [Escherichia coli] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAC03527.1| gyrase subunit B [Shewanella oneidensis] Length = 418 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >gb|AAB80823.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAB63503.1| gyrase B subunit [Pseudoalteromonas tetraodonis] Length = 422 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >ref|NP_312661.1| DNA gyrase subunit B GyrB [Escherichia coli O157:H7] ref|NP_839178.1| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a str. 2457T] sp|P06982|GYRB_ECOLI DNA gyrase subunit B pir||B91208 DNA gyrase subunit B GyrB [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) emb|CAA27871.1| gyrase B (AA 1-804) [Escherichia coli] dbj|BAB38057.1| DNA gyrase subunit B GyrB [Escherichia coli O157:H7] gb|AAP18989.1| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a str. 2457T] Length = 804 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >gb|AAB80843.1| DNA gyrase beta-subunit [Citrobacter sp. JYME-1] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >ref|NP_759958.1| DNA gyrase, subunit B [Vibrio vulnificus CMCP6] gb|AAO09485.1|AE016800_90 DNA gyrase, subunit B [Vibrio vulnificus CMCP6] Length = 805 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >gb|AAB80824.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 4/44 (9%) Query: 26 NRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 NR+N LP+ G VEE F K + + + +A VI AI C Sbjct: 346 NRKNQAILPLKGKILNVEEARFEKML----FFQEVATVITAIGC 385 >dbj|BAC10602.1| DNA gyrase B subunit [Shewanella marinintestina] dbj|BAC10604.1| DNA gyrase B subunit [Shewanella marinintestina] Length = 377 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 364 >dbj|BAC10603.1| DNA gyrase B subunit [Shewanella marinintestina] Length = 380 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 364 >gb|AAL01492.1| gyrase B [Shewanella baltica] Length = 369 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 323 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 363 >gb|AAC38147.1| gyrase B subunit [Vibrio parahaemolyticus] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >dbj|BAB87025.1| DNA gyrase subunit B [Listonella pelagia] Length = 464 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 405 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 445 >gb|AAF61925.1| DNA gyrase B [Klebsiella pneumoniae subsp. pneumoniae] Length = 394 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 333 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 373 >emb|CAD57660.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57661.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57662.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57646.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >dbj|BAC06757.1| gyrase B [Salmonella paratyphi] dbj|BAC06758.1| gyrase B [Salmonella paratyphi] dbj|BAC06759.1| gyrase B [Salmonella paratyphi] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB63499.1| gyrase B subunit [Pseudoalteromonas haloplanktis subsp. haloplanktis] Length = 422 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >dbj|BAC06802.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB63497.1| gyrase B subunit [Pseudoalteromonas citrea] Length = 422 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 348 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 388 >emb|CAD57663.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57632.1| DNA gyrase subunit B [Vibrio splendidus] Length = 191 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >dbj|BAC06612.1| gyrase B [Escherichia coli] dbj|BAC06615.1| gyrase B [Escherichia coli] dbj|BAC06616.1| gyrase B [Escherichia coli] dbj|BAC06617.1| gyrase B [Escherichia coli] dbj|BAC06618.1| gyrase B [Escherichia coli] dbj|BAC06619.1| gyrase B [Escherichia coli] dbj|BAC06647.1| gyrase B [Escherichia coli] dbj|BAC06693.1| gyrase B [Escherichia coli] dbj|BAC06694.1| gyrase B [Escherichia coli] dbj|BAC06695.1| gyrase B [Escherichia coli] dbj|BAC06696.1| gyrase B [Escherichia coli] dbj|BAC06697.1| gyrase B [Escherichia coli] dbj|BAC06698.1| gyrase B [Escherichia coli] dbj|BAC06699.1| gyrase B [Escherichia coli] dbj|BAC06700.1| gyrase B [Escherichia coli] dbj|BAC06701.1| gyrase B [Escherichia coli] dbj|BAC06703.1| gyrase B [Escherichia coli] dbj|BAC06704.1| gyrase B [Escherichia coli] dbj|BAC06705.1| gyrase B [Escherichia coli] dbj|BAC06706.1| gyrase B [Escherichia coli] dbj|BAC06707.1| gyrase B [Escherichia coli] dbj|BAC06708.1| gyrase B [Escherichia coli] dbj|BAC06714.1| gyrase B [Escherichia coli] dbj|BAC06715.1| gyrase B [Escherichia coli] dbj|BAC06718.1| gyrase B [Escherichia coli] dbj|BAC06723.1| gyrase B [Escherichia coli] dbj|BAC06725.1| gyrase B [Escherichia coli] dbj|BAC06726.1| gyrase B [Escherichia coli] dbj|BAC06727.1| gyrase B [Escherichia coli] dbj|BAC06728.1| gyrase B [Escherichia coli] dbj|BAC06729.1| gyrase B [Escherichia coli] dbj|BAC06730.1| gyrase B [Escherichia coli] dbj|BAC06731.1| gyrase B [Escherichia coli] dbj|BAC06733.1| gyrase B [Escherichia coli] dbj|BAC06736.1| gyrase B [Escherichia coli] dbj|BAC06744.1| gyrase B [Escherichia coli] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAB87023.1| DNA gyrase subunit B [Vibrio gazogenes] Length = 463 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 404 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 444 >emb|CAD56007.1| DNA gyrase [Providencia stuartii] Length = 80 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 14 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 54 >dbj|BAC06724.1| gyrase B [Escherichia coli] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAA62050.1| DNA gyrase, subunit B Length = 804 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >gb|AAC03528.1| gyrase subunit B [Shewanella oneidensis] Length = 417 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR-1] gb|AAN53098.1|AE015452_11 DNA gyrase, B subunit [Shewanella oneidensis MR-1] Length = 805 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >dbj|BAC06808.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >ref|NP_756480.1| DNA gyrase subunit B [Escherichia coli CFT073] gb|AAN83054.1|AE016769_169 DNA gyrase subunit B [Escherichia coli CFT073] Length = 805 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >dbj|BAC06768.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >emb|CAD57629.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >gb|AAB63494.1| gyrase B subunit [Pseudoalteromonas atlantica] Length = 423 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 349 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 389 >ref|NP_709501.1| DNA gyrase subunit B GyrB [Shigella flexneri 2a str. 301] gb|AAN45208.1|AE015383_8 DNA gyrase subunit B GyrB [Shigella flexneri 2a str. 301] Length = 805 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >dbj|BAC10607.1| DNA gyrase B subunit [Shewanella sairae] Length = 377 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 364 >dbj|BAC57433.1| gyrase B subunit [Pseudoalteromonas piscicida] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 332 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 372 >dbj|BAC06810.1| gyrase B [Klebsiella pneumoniae] dbj|BAC06811.1| gyrase B [Klebsiella pneumoniae] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB80830.1| DNA gyrase beta-subunit [Shewanella algae] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAC06804.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >ref|NP_796393.1| DNA gyrase, subunit B [Vibrio parahaemolyticus RIMD 2210633] sp|O51859|GYRB_VIBPA DNA gyrase subunit B dbj|BAC58277.1| DNA gyrase, subunit B [Vibrio parahaemolyticus] Length = 805 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 437 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 477 >gb|AAB80844.1| DNA gyrase beta-subunit [Citrobacter sp. MAM-1] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >ref|NP_418154.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli K12] pir||ISECTB DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Escherichia coli (strain K-12) gb|AAC76722.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli K12] Length = 804 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 476 >gb|AAB92595.1| gyrase beta subunit [Shewanella frigidimarina] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >dbj|BAC06746.1| gyrase B [Salmonella enterica subsp. enterica serovar Chester] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB80815.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >gb|AAB80814.1| DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 345 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 385 >emb|CAD57639.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >dbj|BAC06755.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg] dbj|BAC06756.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAB87021.1| DNA gyrase subunit B [Vibrio campbellii] Length = 467 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 408 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 448 >emb|CAD57657.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57658.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57664.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57641.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57642.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57643.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57644.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57645.1| DNA gyrase subunit B [Vibrio splendidus] emb|CAD57648.1| DNA gyrase subunit B [Vibrio splendidus] Length = 189 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 148 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 188 >dbj|BAC06613.1| gyrase B [Escherichia coli] dbj|BAC06622.1| gyrase B [Escherichia coli] dbj|BAC06674.1| gyrase B [Escherichia coli] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAB63495.1| gyrase B subunit [Pseudoalteromonas aurantia] Length = 420 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >dbj|BAC06614.1| gyrase B [Escherichia coli] dbj|BAC06620.1| gyrase B [Escherichia coli] dbj|BAC06621.1| gyrase B [Escherichia coli] dbj|BAC06623.1| gyrase B [Escherichia coli] dbj|BAC06624.1| gyrase B [Escherichia coli] dbj|BAC06625.1| gyrase B [Escherichia coli] dbj|BAC06626.1| gyrase B [Escherichia coli] dbj|BAC06627.1| gyrase B [Escherichia coli] dbj|BAC06628.1| gyrase B [Escherichia coli] dbj|BAC06629.1| gyrase B [Escherichia coli] dbj|BAC06630.1| gyrase B [Escherichia coli] dbj|BAC06631.1| gyrase B [Escherichia coli] dbj|BAC06632.1| gyrase B [Escherichia coli] dbj|BAC06633.1| gyrase B [Escherichia coli] dbj|BAC06634.1| gyrase B [Escherichia coli] dbj|BAC06635.1| gyrase B [Escherichia coli] dbj|BAC06636.1| gyrase B [Escherichia coli] dbj|BAC06637.1| gyrase B [Escherichia coli] dbj|BAC06638.1| gyrase B [Escherichia coli] dbj|BAC06639.1| gyrase B [Escherichia coli] dbj|BAC06640.1| gyrase B [Escherichia coli] dbj|BAC06641.1| gyrase B [Escherichia coli] dbj|BAC06642.1| gyrase B [Escherichia coli] dbj|BAC06643.1| gyrase B [Escherichia coli] dbj|BAC06644.1| gyrase B [Escherichia coli] dbj|BAC06645.1| gyrase B [Escherichia coli] dbj|BAC06646.1| gyrase B [Escherichia coli] dbj|BAC06648.1| gyrase B [Escherichia coli] dbj|BAC06649.1| gyrase B [Escherichia coli] dbj|BAC06650.1| gyrase B [Escherichia coli] dbj|BAC06651.1| gyrase B [Escherichia coli] dbj|BAC06653.1| gyrase B [Escherichia coli] dbj|BAC06654.1| gyrase B [Escherichia coli] dbj|BAC06655.1| gyrase B [Escherichia coli] dbj|BAC06656.1| gyrase B [Escherichia coli] dbj|BAC06657.1| gyrase B [Escherichia coli] dbj|BAC06658.1| gyrase B [Escherichia coli] dbj|BAC06659.1| gyrase B [Escherichia coli] dbj|BAC06660.1| gyrase B [Escherichia coli] dbj|BAC06661.1| gyrase B [Escherichia coli] dbj|BAC06662.1| gyrase B [Escherichia coli] dbj|BAC06663.1| gyrase B [Escherichia coli] dbj|BAC06664.1| gyrase B [Escherichia coli] dbj|BAC06665.1| gyrase B [Escherichia coli] dbj|BAC06666.1| gyrase B [Escherichia coli] dbj|BAC06667.1| gyrase B [Escherichia coli] dbj|BAC06668.1| gyrase B [Escherichia coli] dbj|BAC06669.1| gyrase B [Escherichia coli] dbj|BAC06670.1| gyrase B [Escherichia coli] dbj|BAC06671.1| gyrase B [Escherichia coli] dbj|BAC06672.1| gyrase B [Escherichia coli] dbj|BAC06673.1| gyrase B [Escherichia coli] dbj|BAC06675.1| gyrase B [Escherichia coli] dbj|BAC06676.1| gyrase B [Escherichia coli] dbj|BAC06677.1| gyrase B [Escherichia coli] dbj|BAC06678.1| gyrase B [Escherichia coli] dbj|BAC06679.1| gyrase B [Escherichia coli] dbj|BAC06680.1| gyrase B [Escherichia coli] dbj|BAC06681.1| gyrase B [Escherichia coli] dbj|BAC06682.1| gyrase B [Escherichia coli] dbj|BAC06683.1| gyrase B [Escherichia coli] dbj|BAC06684.1| gyrase B [Escherichia coli] dbj|BAC06685.1| gyrase B [Escherichia coli] dbj|BAC06686.1| gyrase B [Escherichia coli] dbj|BAC06688.1| gyrase B [Escherichia coli] dbj|BAC06689.1| gyrase B [Escherichia coli] dbj|BAC06690.1| gyrase B [Escherichia coli] dbj|BAC06691.1| gyrase B [Escherichia coli] dbj|BAC06692.1| gyrase B [Escherichia coli] dbj|BAC06702.1| gyrase B [Escherichia coli] dbj|BAC06709.1| gyrase B [Escherichia coli] dbj|BAC06710.1| gyrase B [Escherichia coli] dbj|BAC06711.1| gyrase B [Escherichia coli] dbj|BAC06712.1| gyrase B [Escherichia coli] dbj|BAC06713.1| gyrase B [Escherichia coli] dbj|BAC06716.1| gyrase B [Escherichia coli] dbj|BAC06717.1| gyrase B [Escherichia coli] dbj|BAC06719.1| gyrase B [Escherichia coli] dbj|BAC06720.1| gyrase B [Escherichia coli] dbj|BAC06721.1| gyrase B [Escherichia coli] dbj|BAC06722.1| gyrase B [Escherichia coli] dbj|BAC06732.1| gyrase B [Escherichia coli] dbj|BAC06734.1| gyrase B [Escherichia coli] dbj|BAC06735.1| gyrase B [Escherichia coli] dbj|BAC06737.1| gyrase B [Escherichia coli] dbj|BAC06738.1| gyrase B [Escherichia coli] dbj|BAC06739.1| gyrase B [Escherichia coli] dbj|BAC06740.1| gyrase B [Escherichia coli] dbj|BAC06741.1| gyrase B [Escherichia coli] dbj|BAC06742.1| gyrase B [Escherichia coli] dbj|BAC06745.1| gyrase B [Escherichia coli] dbj|BAC06771.1| gyrase B [Shigella boydii] dbj|BAC06772.1| gyrase B [Shigella boydii] dbj|BAC06773.1| gyrase B [Shigella boydii] dbj|BAC06774.1| gyrase B [Shigella flexneri] dbj|BAC06775.1| gyrase B [Shigella flexneri] dbj|BAC06776.1| gyrase B [Shigella flexneri] dbj|BAC06777.1| gyrase B [Shigella flexneri] dbj|BAC06778.1| gyrase B [Shigella flexneri] dbj|BAC06779.1| gyrase B [Shigella flexneri] dbj|BAC06780.1| gyrase B [Shigella flexneri] dbj|BAC06781.1| gyrase B [Shigella flexneri] dbj|BAC06782.1| gyrase B [Shigella flexneri] dbj|BAC06783.1| gyrase B [Shigella flexneri] dbj|BAC06784.1| gyrase B [Shigella flexneri] dbj|BAC06785.1| gyrase B [Shigella flexneri] dbj|BAC06786.1| gyrase B [Shigella flexneri] dbj|BAC06787.1| gyrase B [Shigella flexneri] dbj|BAC06788.1| gyrase B [Shigella flexneri] dbj|BAC06789.1| gyrase B [Shigella sonnei] dbj|BAC06790.1| gyrase B [Shigella sonnei] dbj|BAC06791.1| gyrase B [Shigella sonnei] dbj|BAC06792.1| gyrase B [Shigella sonnei] dbj|BAC06793.1| gyrase B [Shigella sonnei] dbj|BAC06794.1| gyrase B [Shigella sonnei] dbj|BAC06795.1| gyrase B [Shigella sonnei] dbj|BAC06796.1| gyrase B [Shigella sonnei] dbj|BAC06797.1| gyrase B [Shigella sonnei] dbj|BAC06798.1| gyrase B [Shigella sonnei] dbj|BAC06799.1| gyrase B [Shigella sonnei] dbj|BAC06800.1| gyrase B [Shigella sonnei] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >dbj|BAC06805.1| gyrase B [Enterobacter cloacae] dbj|BAC06806.1| gyrase B [Enterobacter cloacae] Length = 390 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >gb|AAD30293.1|AF139115_1 gyrase B subunit [Pseudoalteromonas piscicida] Length = 420 Score = 32.4 bits (72), Expect = 1.3 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 386 >dbj|BAB87019.1| DNA gyrase subunit B [Serratia rubidaea] Length = 390 Score = 32.4 bits (72), Expect = 1.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 331 RNRRNQAILPLKGKILNVEKARFDKMLSSQE----VATLITALGC 371 >emb|CAB57876.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae] Length = 676 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 332 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 372 >gb|AAD32644.1|AF136384_1 gyrase B [Photobacterium damselae subsp. damselae] Length = 419 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 386 >emb|CAB60271.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae] Length = 324 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 169 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 209 >gb|AAD32645.1|AF136385_1 gyrase B [Photobacterium leiognathi] Length = 419 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 386 >emb|CAB57885.1| DNA gyrase B subunit [Photobacterium damselae subsp. piscicida] Length = 682 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 339 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 379 >gb|AAD32643.1|AF136383_1 gyrase B [Photobacterium angustum] Length = 419 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 RNR+N LP+ G VE+ F K +S E +A +I A+ C Sbjct: 346 RNRKNQAILPLKGKILNVEKARFDKMLSSQE----VATLITAMGC 386 >pir||A34372 complement C6 precursor [validated] - human gb|AAA51860.1| complement component C6 precursor peptide Length = 934 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >gb|AAB59433.1| complement component C6 Length = 491 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >ref|NP_000056.1| Complement component 6 precursor [Homo sapiens] sp|P13671|CO6_HUMAN Complement component C6 precursor gb|AAA59668.1| completement component C6 emb|CAA50994.1| complement component C6 [Homo sapiens] gb|AAH35723.1| complement component 6 [Homo sapiens] Length = 934 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >ref|NP_500100.1| Putative protein family member, nematode specific (49.0 kD) [Caenorhabditis elegans] gb|AAK68466.1|AC024776_8 Hypothetical protein Y41D4B.16 [Caenorhabditis elegans] Length = 453 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 2/51 (3%) Query: 71 SKSAAVPSVLQ--PSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTS 119 S +A+ PS+ S +PP TTA N+PA P P+ TS Sbjct: 373 SSTASTPSIASTATSAATNPPTTTAGASTNSPATNPPTTSRPITASQSTTS 423 >pir||T30322 type I site-specific deoxyribonuclease (EC 3.1.21.3) LldI chain hsdR - Lactococcus lactis plasmid pIL2614 gb|AAC15896.1| type IC restriction subunit [Lactococcus lactis] Length = 1025 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/30 (46%), Positives = 21/30 (69%) Query: 35 VPGDARQVEEYVFAKCMSKDEYMRTIAKVI 64 +PGDA Q EE + A+ KDE++RT+ + I Sbjct: 514 LPGDALQQEELLPAELYEKDEHIRTMLQKI 543 >ref|NP_650035.1| CG14696-PA [Drosophila melanogaster] gb|AAF54577.1| CG14696-PA [Drosophila melanogaster] Length = 457 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/42 (33%), Positives = 21/42 (49%) Query: 77 PSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPT 118 P+ + P+ SPP TT + + P G +PPD +PT Sbjct: 401 PNPVSPAAQKSPPYTTNTPVASPPGGNFEVLGFSIPPDYKPT 442 >gb|AAD02075.3| subtilisin-like protease C1 [Glycine max] Length = 628 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/68 (27%), Positives = 29/68 (41%), Gaps = 12/68 (17%) Query: 27 RQNAPNLPVPG------DARQVEEYV------FAKCMSKDEYMRTIAKVINAINCNSKSA 74 R P+LP+PG D V +Y+ A DE TIA V+ + + + Sbjct: 315 RDLPPSLPLPGSYLALQDGASVYDYINSTRTPIATIFKTDETKDTIAPVVASFSSRGPNI 374 Query: 75 AVPSVLQP 82 P +L+P Sbjct: 375 VTPEILKP 382 >ref|XP_294521.1| hypothetical protein XP_294521 [Homo sapiens] Length = 2634 Score = 31.6 bits (70), Expect = 2.1 Identities = 27/110 (24%), Positives = 41/110 (36%), Gaps = 21/110 (19%) Query: 7 PSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINA 66 PSP F H IQR EP L + N ++F +S+D M ++ + A Sbjct: 401 PSPLFPPHHIQRAEPSLQPEASLSLN----------TVFLFDSTLSQD--MNPLSNISQA 448 Query: 67 INCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116 +N A H PP +A L + P + + P P+ Sbjct: 449 MNATDSCA---------WHHEPPNPSALPLEDCPVTQSKASPTVLKPFPE 489 >ref|NP_841214.1| hypothetical protein [Nitrosomonas europaea ATCC 19718] emb|CAD85068.1| hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 297 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 45 YVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSV----LQPSQFHSP--PCTTAALLGN 98 ++ A +S DE + T + I+ + S+ PS L PS S P +GN Sbjct: 74 WIAADWLSDDEKLETSSTEISLSAVSPASSETPSTEPVPLLPSVGFSSDQPSENNPAIGN 133 Query: 99 TPAGGTPGYRAPVPPDPQPTSA 120 P G +A PDPQP A Sbjct: 134 VPDGDIGSDQAVQAPDPQPQRA 155 >gb|AAF21002.1|AF208251_1 DNA gyrase subunit beta [Aeromonas hydrophila] Length = 387 Score = 31.2 bits (69), Expect = 2.5 Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 5/63 (7%) Query: 25 RNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCN-SKSAAVPSVLQPS 83 RNR+N LP+ G VE+ F K +S E + +I A+ C + P L+ S Sbjct: 324 RNRKNQAILPLKGKILNVEKARFDKMISSQE----VGTLITALGCGIGRDEYNPDKLRVS 379 Query: 84 QFH 86 H Sbjct: 380 HHH 382 >ref|NP_777649.1| putative DNA gyrase subunit b [Buchnera aphidicola (Baizongia pistaciae)] sp|Q89B37|GYRB_BUCBP DNA gyrase subunit B gb|AAO26754.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 804 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 4/46 (8%) Query: 24 ARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 ARNR+N LP+ G VE+ + K +S E + +I A+ C Sbjct: 435 ARNRKNQAILPLKGKILNVEKARYEKMLSSQE----VTTLITALGC 476 >ref|NP_775381.1| dystroglycan 1 [Danio rerio] gb|AAM78508.1|AF483476_1 dystroglycan [Danio rerio] Length = 866 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/54 (29%), Positives = 24/54 (43%), Gaps = 5/54 (9%) Query: 70 NSKSAAVPSVLQPSQFHSP-----PCTTAALLGNTPAGGTPGYRAPVPPDPQPT 118 N+ +PS+L P+ + P P T+ + T P R PVP +PT Sbjct: 325 NNTPTPIPSLLPPTTYPEPPIRIVPTPTSPSIAPTSESSAPPVRGPVPLPVKPT 378 >ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] Length = 501 Score = 31.2 bits (69), Expect = 3.1 Identities = 19/85 (22%), Positives = 35/85 (40%) Query: 5 DWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI 64 D P ++RL+ + R RQ + P + + E F +++++Y + K Sbjct: 185 DPAQPHSYVRAMERLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQ 244 Query: 65 NAINCNSKSAAVPSVLQPSQFHSPP 89 + VPS +QFH+ P Sbjct: 245 EYVRSGDIFQVVPSQRLCTQFHARP 269 >ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] Length = 501 Score = 30.9 bits (68), Expect = 3.6 Identities = 17/74 (22%), Positives = 33/74 (43%) Query: 16 IQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAA 75 ++RL+ + R RQ + P + + E F +++++Y + K + Sbjct: 196 MERLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQV 255 Query: 76 VPSVLQPSQFHSPP 89 VPS +QFH+ P Sbjct: 256 VPSQRLCTQFHARP 269 >ref|NP_778415.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] gb|AAO28064.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] Length = 491 Score = 30.9 bits (68), Expect = 3.7 Identities = 19/85 (22%), Positives = 35/85 (40%) Query: 5 DWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI 64 D P ++RL+ + R RQ + P + + E F +++++Y + K Sbjct: 175 DPAQPHSYVRAMKRLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQ 234 Query: 65 NAINCNSKSAAVPSVLQPSQFHSPP 89 + VPS +QFH+ P Sbjct: 235 EYVRSGDIFQVVPSQRLCTQFHARP 259 >ref|ZP_00107232.1| hypothetical protein [Nostoc punctiforme] Length = 437 Score = 30.5 bits (67), Expect = 4.5 Identities = 17/65 (26%), Positives = 28/65 (42%) Query: 57 MRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116 + T+ + + N +AAV + L+P + P T PA RA + P+ + Sbjct: 295 LNTVRQAAKPVTVNMLAAAVRAELKPIAGRTAPITVRQTPKPLPALPVVPLRAALAPESE 354 Query: 117 PTSAQ 121 PT Q Sbjct: 355 PTITQ 359 >ref|NP_297503.1| anthranilate synthase component I [Xylella fastidiosa 9a5c] pir||A82835 anthranilate synthase component I XF0210 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83023.1|AE003874_7 anthranilate synthase component I [Xylella fastidiosa 9a5c] Length = 487 Score = 30.5 bits (67), Expect = 5.2 Identities = 18/85 (21%), Positives = 35/85 (41%) Query: 5 DWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI 64 D P ++RL+ + R RQ + P + + E F +++++Y + + Sbjct: 171 DPAQPHAYARAVERLDVLIYRLRQGGVDYPHSHISEVINEEDFHSSLTREQYHAVVRQAQ 230 Query: 65 NAINCNSKSAAVPSVLQPSQFHSPP 89 + VPS +QFH+ P Sbjct: 231 EYVRSGDIFQVVPSQRLCTQFHARP 255 >ref|NP_497144.1| TAZ zinc finger family member [Caenorhabditis elegans] pir||T33579 hypothetical protein C29F9.6 - Caenorhabditis elegans gb|AAC68748.1| Hypothetical protein C29F9.6 [Caenorhabditis elegans] Length = 228 Score = 30.1 bits (66), Expect = 5.9 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 12 REHVIQRLEPELARNRQN-APNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 RE VI+R+ + + Q P + DAR E +F S+DEY R + Sbjct: 129 REAVIERISKHIMLHPQRFEPIWKIKEDARAAELQIFEAAGSRDEYYRMV 178 >ref|NP_823711.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC70246.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 595 Score = 30.1 bits (66), Expect = 6.1 Identities = 22/68 (32%), Positives = 24/68 (34%), Gaps = 12/68 (17%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGG-TPGYRAPVPPDPQ---------- 116 N +S P V P H+PP T A G P GY PVP Sbjct: 305 NIDSVGTLPPPVTAPGTGHTPPVTAAPGTGGGPTSAFDGGYGTPVPNGTSGRGGGAGGVR 364 Query: 117 -PTSAQAR 123 P SAQ R Sbjct: 365 PPASAQGR 372 >emb|CAA77176.1| Bassoon protein [Homo sapiens] Length = 3851 Score = 29.3 bits (64), Expect = 9.9 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 6/100 (6%) Query: 29 NAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSA------AVPSVLQP 82 + P+ P Q V +C T K +NC + A P Sbjct: 105 STPSQPNFNTCTQCHNKVCNQCGFNPNPHLTQVKEWLCLNCQMQRALGMDMTTAPRSKSQ 164 Query: 83 SQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQA 122 Q HSP + A P G R+ P PQP S QA Sbjct: 165 QQLHSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGSRQA 204 >ref|XP_286286.1| hypothetical protein XP_286286 [Mus musculus] Length = 198 Score = 29.3 bits (64), Expect = 9.9 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Query: 36 PGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSP-PCTTAA 94 PGDA++V VF + + +R + + A C ++ AVP+VL+ S H P C T Sbjct: 95 PGDAQRVCVCVFLGHPAPEHLLRAVPGLSPAC-CAARCGAVPAVLRSS--HRPAACATWV 151 Query: 95 LLGNTPAGGTPGYRAPVPPDPQP 117 P RA P +P Sbjct: 152 RSPRHPPHAARTSRAVSSPPLEP 174 >ref|NP_003449.1| bassoon; zinc finger protein 231; neuronal double zinc finger protein [Homo sapiens] gb|AAC83555.1| neuronal double zinc finger protein [Homo sapiens] Length = 3926 Score = 29.3 bits (64), Expect = 9.9 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 6/100 (6%) Query: 29 NAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSA------AVPSVLQP 82 + P+ P Q V +C T K +NC + A P Sbjct: 180 STPSQPNFNTCTQCHNKVCNQCGFNPNPHLTQVKEWLCLNCQMQRALGMDMTTAPRSKSQ 239 Query: 83 SQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQA 122 Q HSP + A P G R+ P PQP S QA Sbjct: 240 QQLHSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGSRQA 279 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 231 2e-60 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 223 4e-58 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 188 2e-47 ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] >gi|5052530... 92 1e-18 Sequences not found previously or not previously below threshold: dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 48 3e-05 ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associate... 48 3e-05 gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 48 3e-05 sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 48 3e-05 gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein... 47 7e-05 sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associ... 46 1e-04 ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associate... 45 2e-04 dbj|BAC20040.1| hypothetical protein~similar to Oryza sativa chr... 35 0.23 ref|XP_147188.1| positive cofactor 2, multiprotein complex, glut... 34 0.45 ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] 34 0.51 ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] 34 0.51 ref|NP_055637.1| Sec24-related protein D; protein transport prot... 34 0.57 gb|AAH35761.1| Unknown (protein for MGC:46092) [Homo sapiens] 34 0.57 ref|NP_778415.1| anthranilate synthase component I [Xylella fast... 34 0.58 dbj|BAC30803.1| unnamed protein product [Mus musculus] 34 0.59 ref|NP_057913.1| complement component 6 [Mus musculus] >gi|65030... 34 0.59 gb|AAH11251.1| complement component 6 [Mus musculus] 34 0.59 gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] 33 0.62 gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein... 33 0.88 gb|AAC12944.1| TPA inducible protein [Homo sapiens] 32 1.1 ref|NP_495437.2| uDENN domain and DENN domain and dDENN domain ... 32 1.1 pir||T15824 hypothetical protein C52E12.4 - Caenorhabditis elegans 32 1.1 pir||A34372 complement C6 precursor [validated] - human >gi|1797... 32 1.4 gb|AAB59433.1| complement component C6 32 1.4 ref|NP_000056.1| Complement component 6 precursor [Homo sapiens]... 32 1.4 ref|NP_500100.1| Putative protein family member, nematode specif... 32 1.5 ref|NP_650035.1| CG14696-PA [Drosophila melanogaster] >gi|729938... 32 1.6 ref|NP_297503.1| anthranilate synthase component I [Xylella fast... 32 1.6 ref|NP_775381.1| dystroglycan 1 [Danio rerio] >gi|21902309|gb|AA... 32 2.2 pir||T31070 notch homolog - sea urchin (Lytechinus variegatus) >... 32 2.4 ref|NP_788263.1| complement component 6 [Rattus norvegicus] >gi|... 31 2.5 emb|CAD70476.1| related to two-component histidine kinase chk-1 ... 31 2.9 ref|XP_294521.1| hypothetical protein XP_294521 [Homo sapiens] 31 3.2 ref|ZP_00107232.1| hypothetical protein [Nostoc punctiforme] 30 4.3 ref|NP_823711.1| hypothetical protein [Streptomyces avermitilis ... 30 4.4 gb|AAA45880.1| major outer envelope glycoprotein gp220 30 4.4 sp|Q9BX69|CAR6_HUMAN Caspase recruitment domain protein 6 >gi|13... 30 4.5 ref|NP_115976.2| caspase recruitment domain family, member 6; ca... 30 4.6 ref|XP_218187.1| similar to hypothetical protein MGC40675 [Mus m... 30 4.6 ref|NP_004371.1| CREB binding protein [Homo sapiens] >gi|3023440... 30 4.7 gb|AAC51331.2| CREB-binding protein [Homo sapiens] 30 4.7 emb|CAA27981.1| complement C8-beta propetide /map='1p36.2- p22.1... 30 4.9 ref|NP_000057.1| complement component 8, beta polypeptide [Homo ... 30 4.9 sp|P07358|CO8B_HUMAN Complement component C8 beta chain precursor 30 4.9 pir||QQBE22 membrane antigen gp220 - human herpesvirus 4 (strain... 30 5.3 emb|CAB97351.1| MADS-box protein 3 [Hordeum vulgare subsp. vulgare] 30 5.6 emb|CAA77176.1| Bassoon protein [Homo sapiens] 30 6.2 ref|NP_003449.1| bassoon; zinc finger protein 231; neuronal doub... 30 6.2 ref|NP_841214.1| hypothetical protein [Nitrosomonas europaea ATC... 30 6.6 ref|XP_221984.1| similar to Leukosialin precursor (Leucocyte sia... 30 7.8 gb|AAD51698.1|AF172333_1 major outer envelope glycoprotein gp350... 30 8.3 ref|XP_140004.1| similar to Ferritin heavy chain (Ferritin H sub... 30 8.6 dbj|BAB40784.1| HrDoublecortin [Halocynthia roretzi] 29 9.3 ref|NP_013237.1| Zinc finger containing homolog of mammalian TIS... 29 9.4 ref|NP_150289.1| protein phosphatase 1, regulatory (inhibitory) ... 29 9.5 >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 231 bits (588), Expect = 2e-60 Identities = 124/124 (100%), Positives = 124/124 (100%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 Query: 121 QARN 124 QARN Sbjct: 121 QARN 124 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 223 bits (567), Expect = 4e-58 Identities = 121/124 (97%), Positives = 121/124 (97%), Gaps = 3/124 (2%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA GNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA---GNTPAGGTPGYRAPVPPDPQPTSA 117 Query: 121 QARN 124 QARN Sbjct: 118 QARN 121 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 188 bits (476), Expect = 2e-47 Identities = 104/124 (83%), Positives = 104/124 (83%), Gaps = 20/124 (16%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA DPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA--------------------DPQPTSA 100 Query: 121 QARN 124 QARN Sbjct: 101 QARN 104 >ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] gb|AAD38595.1|AF145620_1 BcDNA.GH03922 [Drosophila melanogaster] gb|AAF51490.1| CG4184-PA [Drosophila melanogaster] Length = 749 Score = 92.1 bits (227), Expect = 1e-18 Identities = 22/60 (36%), Positives = 35/60 (57%), Gaps = 5/60 (8%) Query: 4 EDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKV 63 EDW S KFR++VI ++ L N Q+ +A +E ++F K +KDEY+ +AK+ Sbjct: 3 EDWQSQKFRQNVISKIHDLLPPNAQDQTK-----NAGVMENHIFRKSRTKDEYLGLVAKL 57 >dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] Length = 811 Score = 47.8 bits (112), Expect = 3e-05 Identities = 16/62 (25%), Positives = 32/62 (50%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 30 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 84 Query: 63 VI 64 +I Sbjct: 85 LI 86 >ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA inducible protein; TPA inducible gene-1; PC2-glutamine-rich-associated protein; trinucleotide repeat containing 7 [Homo sapiens] gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Homo sapiens] Length = 748 Score = 47.8 bits (112), Expect = 3e-05 Identities = 16/62 (25%), Positives = 32/62 (50%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens] Length = 746 Score = 47.8 bits (112), Expect = 3e-05 Identities = 16/62 (25%), Positives = 32/62 (50%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a) Length = 788 Score = 47.8 bits (112), Expect = 3e-05 Identities = 16/62 (25%), Positives = 32/62 (50%), Gaps = 5/62 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI 64 +I Sbjct: 62 LI 63 >gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Danio rerio] Length = 809 Score = 46.7 bits (109), Expect = 7e-05 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 20/112 (17%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 Query: 63 V-INAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPP 113 + I+ + + K+ P + Q N P GG PG P PP Sbjct: 62 LIIHFRDIHKKAQGGPDPINALQ-------------NLP-GGVPGVIGPRPP 99 >sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 45.5 bits (106), Expect = 1e-04 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRG 105 >ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associated protein [Mus musculus] gb|AAK58424.1|AF328770_1 PC2-glutamine-rich-associated protein [Mus musculus] Length = 667 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRG 105 >dbj|BAC20040.1| hypothetical protein~similar to Oryza sativa chromosome10, OSJNBa0082M15.26 [Oryza sativa (japonica cultivar-group)] Length = 2192 Score = 34.7 bits (78), Expect = 0.23 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Query: 46 VFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTP 105 +FA + K M TI++ I AI +++ S L PS + +++ G Sbjct: 1847 IFAGDLVKQ--MGTISEHIKAI---ARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNI 1901 Query: 106 GYRAPVPPDPQPTSAQA 122 G RAPV DP P SA A Sbjct: 1902 GRRAPVGNDPTPPSASA 1918 >ref|XP_147188.1| positive cofactor 2, multiprotein complex, glutamine/Q-rich-associated protein [Mus musculus] Length = 763 Score = 34.0 bits (76), Expect = 0.45 Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 4/68 (5%) Query: 39 ARQVEEYVFAKCMSKDEYMRTIAKVI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAA 94 ++ +E +VF K ++DEY+ +A++I I+ A+V + Q P AA Sbjct: 12 SKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAA 71 Query: 95 LLGNTPAG 102 +G P G Sbjct: 72 GIGMPPRG 79 >ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] Length = 501 Score = 33.6 bits (75), Expect = 0.51 Identities = 17/74 (22%), Positives = 33/74 (43%) Query: 16 IQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAA 75 ++RL+ + R RQ + P + + E F +++++Y + K + Sbjct: 196 MERLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQV 255 Query: 76 VPSVLQPSQFHSPP 89 VPS +QFH+ P Sbjct: 256 VPSQRLCTQFHARP 269 >ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] Length = 501 Score = 33.6 bits (75), Expect = 0.51 Identities = 17/74 (22%), Positives = 33/74 (43%) Query: 16 IQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAA 75 ++RL+ + R RQ + P + + E F +++++Y + K + Sbjct: 196 MERLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQV 255 Query: 76 VPSVLQPSQFHSPP 89 VPS +QFH+ P Sbjct: 256 VPSQRLCTQFHARP 269 >ref|NP_055637.1| Sec24-related protein D; protein transport protein Sec24D [Homo sapiens] sp|O94855|S24D_HUMAN Protein transport protein Sec24D (SEC24-related protein D) dbj|BAA34475.1| KIAA0755 protein [Homo sapiens] gb|AAD28756.2| sec24D protein [Homo sapiens] Length = 1032 Score = 33.6 bits (75), Expect = 0.57 Identities = 20/46 (43%), Positives = 23/46 (49%), Gaps = 2/46 (4%) Query: 77 PSVLQP-SQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQ 121 PS+LQP SQ PP TT G +P P YR P P +AQ Sbjct: 161 PSILQPGSQVLPPPPTTLNGPGASPL-PLPMYRPDGLSGPPPPNAQ 205 >gb|AAH35761.1| Unknown (protein for MGC:46092) [Homo sapiens] Length = 1033 Score = 33.6 bits (75), Expect = 0.57 Identities = 20/46 (43%), Positives = 23/46 (49%), Gaps = 2/46 (4%) Query: 77 PSVLQP-SQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQ 121 PS+LQP SQ PP TT G +P P YR P P +AQ Sbjct: 161 PSILQPGSQVLPPPPTTLNGPGASPL-PLPMYRPDGLSGPPPPNAQ 205 >ref|NP_778415.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] gb|AAO28064.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] Length = 491 Score = 33.6 bits (75), Expect = 0.58 Identities = 17/74 (22%), Positives = 33/74 (43%) Query: 16 IQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAA 75 ++RL+ + R RQ + P + + E F +++++Y + K + Sbjct: 186 MKRLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQV 245 Query: 76 VPSVLQPSQFHSPP 89 VPS +QFH+ P Sbjct: 246 VPSQRLCTQFHARP 259 >dbj|BAC30803.1| unnamed protein product [Mus musculus] Length = 261 Score = 33.6 bits (75), Expect = 0.59 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >ref|NP_057913.1| complement component 6 [Mus musculus] gb|AAF14577.1|AF184900_1 complement component 6 [Mus musculus] Length = 769 Score = 33.6 bits (75), Expect = 0.59 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >gb|AAH11251.1| complement component 6 [Mus musculus] Length = 769 Score = 33.6 bits (75), Expect = 0.59 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CTEKQVKVKSVLRPSQFGGQPCT 118 >gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] Length = 754 Score = 33.2 bits (74), Expect = 0.62 Identities = 12/41 (29%), Positives = 27/41 (65%), Gaps = 4/41 (9%) Query: 39 ARQVEEYVFAKCMSKDEYMRTIAKVI----NAINCNSKSAA 75 ++ +E +VF K +++EY+ +A++I + +N S++AA Sbjct: 12 SKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAA 52 >gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Xenopus laevis] Length = 846 Score = 32.8 bits (73), Expect = 0.88 Identities = 8/26 (30%), Positives = 20/26 (76%) Query: 39 ARQVEEYVFAKCMSKDEYMRTIAKVI 64 ++++E +VF K +++EY+ +A++I Sbjct: 22 SKEMESHVFLKAKTREEYLSLVARLI 47 >gb|AAC12944.1| TPA inducible protein [Homo sapiens] Length = 579 Score = 32.4 bits (72), Expect = 1.1 Identities = 9/26 (34%), Positives = 19/26 (72%) Query: 39 ARQVEEYVFAKCMSKDEYMRTIAKVI 64 ++ +E +VF K ++DEY+ +A++I Sbjct: 12 SKDMESHVFLKAKTRDEYLSLVARLI 37 >ref|NP_495437.2| uDENN domain and DENN domain and dDENN domain and RUN domain and PLAT/LH2 domain containing protein family member [Caenorhabditis elegans] gb|AAA93455.3| Hypothetical protein C52E12.4 [Caenorhabditis elegans] Length = 1487 Score = 32.4 bits (72), Expect = 1.1 Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 1/52 (1%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAP-VPPDPQPT 118 N + KS+ VLQ F P TT A + G+RAP +PP PQ T Sbjct: 824 NKHGKSSLWNFVLQHQDFEKPGLTTRASSTSMLTPAIRGFRAPSLPPAPQST 875 >pir||T15824 hypothetical protein C52E12.4 - Caenorhabditis elegans Length = 1238 Score = 32.4 bits (72), Expect = 1.1 Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 1/52 (1%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAP-VPPDPQPT 118 N + KS+ VLQ F P TT A + G+RAP +PP PQ T Sbjct: 601 NKHGKSSLWNFVLQHQDFEKPGLTTRASSTSMLTPAIRGFRAPSLPPAPQST 652 >pir||A34372 complement C6 precursor [validated] - human gb|AAA51860.1| complement component C6 precursor peptide Length = 934 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >gb|AAB59433.1| complement component C6 Length = 491 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >ref|NP_000056.1| Complement component 6 precursor [Homo sapiens] sp|P13671|CO6_HUMAN Complement component C6 precursor gb|AAA59668.1| completement component C6 emb|CAA50994.1| complement component C6 [Homo sapiens] gb|AAH35723.1| complement component 6 [Homo sapiens] Length = 934 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/23 (56%), Positives = 15/23 (64%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K + V SVL+PSQF PCT Sbjct: 96 CIEKQSKVRSVLRPSQFGGQPCT 118 >ref|NP_500100.1| Putative protein family member, nematode specific (49.0 kD) [Caenorhabditis elegans] gb|AAK68466.1|AC024776_8 Hypothetical protein Y41D4B.16 [Caenorhabditis elegans] Length = 453 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 2/51 (3%) Query: 71 SKSAAVPSVLQ--PSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTS 119 S +A+ PS+ S +PP TTA N+PA P P+ TS Sbjct: 373 SSTASTPSIASTATSAATNPPTTTAGASTNSPATNPPTTSRPITASQSTTS 423 >ref|NP_650035.1| CG14696-PA [Drosophila melanogaster] gb|AAF54577.1| CG14696-PA [Drosophila melanogaster] Length = 457 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/42 (33%), Positives = 21/42 (49%) Query: 77 PSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPT 118 P+ + P+ SPP TT + + P G +PPD +PT Sbjct: 401 PNPVSPAAQKSPPYTTNTPVASPPGGNFEVLGFSIPPDYKPT 442 >ref|NP_297503.1| anthranilate synthase component I [Xylella fastidiosa 9a5c] pir||A82835 anthranilate synthase component I XF0210 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83023.1|AE003874_7 anthranilate synthase component I [Xylella fastidiosa 9a5c] Length = 487 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/74 (21%), Positives = 33/74 (43%) Query: 16 IQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAA 75 ++RL+ + R RQ + P + + E F +++++Y + + + Sbjct: 182 VERLDVLIYRLRQGGVDYPHSHISEVINEEDFHSSLTREQYHAVVRQAQEYVRSGDIFQV 241 Query: 76 VPSVLQPSQFHSPP 89 VPS +QFH+ P Sbjct: 242 VPSQRLCTQFHARP 255 >ref|NP_775381.1| dystroglycan 1 [Danio rerio] gb|AAM78508.1|AF483476_1 dystroglycan [Danio rerio] Length = 866 Score = 31.7 bits (70), Expect = 2.2 Identities = 16/54 (29%), Positives = 24/54 (43%), Gaps = 5/54 (9%) Query: 70 NSKSAAVPSVLQPSQFHSP-----PCTTAALLGNTPAGGTPGYRAPVPPDPQPT 118 N+ +PS+L P+ + P P T+ + T P R PVP +PT Sbjct: 325 NNTPTPIPSLLPPTTYPEPPIRIVPTPTSPSIAPTSESSAPPVRGPVPLPVKPT 378 >pir||T31070 notch homolog - sea urchin (Lytechinus variegatus) gb|AAB82088.1| notch homolog [Lytechinus variegatus] Length = 2531 Score = 31.7 bits (70), Expect = 2.4 Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 4/49 (8%) Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQ 121 S PS PS++ +P T+A+ + A +P PVPP+ Q S Q Sbjct: 2455 SFPTPSPESPSKWSNPSPTSASDWSGSEAISSP----PVPPNQQQVSGQ 2499 >ref|NP_788263.1| complement component 6 [Rattus norvegicus] gb|AAO40768.1| complement factor 6 [Rattus norvegicus] Length = 934 Score = 31.3 bits (69), Expect = 2.5 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 69 CNSKSAAVPSVLQPSQFHSPPCT 91 C K V SVL+PSQF PCT Sbjct: 96 CIRKQVKVRSVLRPSQFGGQPCT 118 >emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa] gb|EAA27381.1| hypothetical protein [Neurospora crassa] Length = 2177 Score = 31.3 bits (69), Expect = 2.9 Identities = 22/52 (42%), Positives = 26/52 (49%), Gaps = 2/52 (3%) Query: 72 KSAAVPSVLQPSQFHSPPCTTAALLGNTPAGG-TPGYRAPVPPDPQPTSAQA 122 + A+ PS P Q S P TT+ GNT GG TPG A P P P A + Sbjct: 273 EEASSPSPQLP-QSGSEPTTTSTESGNTIRGGVTPGLTARTPSYPFPRMASS 323 >ref|XP_294521.1| hypothetical protein XP_294521 [Homo sapiens] Length = 2634 Score = 30.9 bits (68), Expect = 3.2 Identities = 27/110 (24%), Positives = 41/110 (36%), Gaps = 21/110 (19%) Query: 7 PSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINA 66 PSP F H IQR EP L + N ++F +S+D M ++ + A Sbjct: 401 PSPLFPPHHIQRAEPSLQPEASLSLNTV----------FLFDSTLSQD--MNPLSNISQA 448 Query: 67 INCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116 +N A H PP +A L + P + + P P+ Sbjct: 449 MNATDSCA---------WHHEPPNPSALPLEDCPVTQSKASPTVLKPFPE 489 >ref|ZP_00107232.1| hypothetical protein [Nostoc punctiforme] Length = 437 Score = 30.5 bits (67), Expect = 4.3 Identities = 17/65 (26%), Positives = 28/65 (42%) Query: 57 MRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116 + T+ + + N +AAV + L+P + P T PA RA + P+ + Sbjct: 295 LNTVRQAAKPVTVNMLAAAVRAELKPIAGRTAPITVRQTPKPLPALPVVPLRAALAPESE 354 Query: 117 PTSAQ 121 PT Q Sbjct: 355 PTITQ 359 >ref|NP_823711.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC70246.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 595 Score = 30.5 bits (67), Expect = 4.4 Identities = 22/68 (32%), Positives = 24/68 (34%), Gaps = 12/68 (17%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGG-TPGYRAPVPPDPQ---------- 116 N +S P V P H+PP T A G P GY PVP Sbjct: 305 NIDSVGTLPPPVTAPGTGHTPPVTAAPGTGGGPTSAFDGGYGTPVPNGTSGRGGGAGGVR 364 Query: 117 -PTSAQAR 123 P SAQ R Sbjct: 365 PPASAQGR 372 >gb|AAA45880.1| major outer envelope glycoprotein gp220 Length = 658 Score = 30.5 bits (67), Expect = 4.4 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S VP+ L P +TA + TPAG T G +PV P P P Sbjct: 451 STHVPTNLTAPASTGPTVSTADVTSPTPAGTTSG-ASPVTPSPSP 494 >sp|Q9BX69|CAR6_HUMAN Caspase recruitment domain protein 6 gb|AAK32718.1|AF356193_1 caspase recruitment domain protein 6 [Homo sapiens] Length = 1037 Score = 30.5 bits (67), Expect = 4.5 Identities = 12/39 (30%), Positives = 16/39 (40%) Query: 81 QPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTS 119 QPSQ PC + + P P PP P+ +S Sbjct: 978 QPSQTKPSPCKSTQPKPSQPWPPQSKPSQPRPPQPKSSS 1016 >ref|NP_115976.2| caspase recruitment domain family, member 6; caspase recruitment domain protein 6 [Homo sapiens] Length = 1037 Score = 30.5 bits (67), Expect = 4.6 Identities = 12/39 (30%), Positives = 16/39 (40%) Query: 81 QPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTS 119 QPSQ PC + + P P PP P+ +S Sbjct: 978 QPSQTKPSPCKSTQPKPSQPWPPQSKPSQPRPPQPKSSS 1016 >ref|XP_218187.1| similar to hypothetical protein MGC40675 [Mus musculus] [Rattus norvegicus] Length = 813 Score = 30.5 bits (67), Expect = 4.6 Identities = 17/54 (31%), Positives = 20/54 (36%) Query: 68 NCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQ 121 N S AA PS L P +P + A P P P+P SAQ Sbjct: 386 NGASTPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQ 439 >ref|NP_004371.1| CREB binding protein [Homo sapiens] sp|Q92793|CBP_HUMAN CREB-binding protein gb|AAC51770.1| CREB-binding protein Length = 2442 Score = 30.5 bits (67), Expect = 4.7 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 16/115 (13%) Query: 8 SPKFREHVIQRLEPELARNR-----QNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 + R H++ +L + ++ + A++VE ++ S+DEY +A+ Sbjct: 597 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 656 Query: 63 VINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 I I + + S+ H +LGN PA PG + PV P QP Sbjct: 657 KIYKIQKELEEK------RRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQP 700 >gb|AAC51331.2| CREB-binding protein [Homo sapiens] Length = 2442 Score = 30.5 bits (67), Expect = 4.7 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 16/115 (13%) Query: 8 SPKFREHVIQRLEPELARNR-----QNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 + R H++ +L + ++ + A++VE ++ S+DEY +A+ Sbjct: 597 TQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAE 656 Query: 63 VINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 I I + + S+ H +LGN PA PG + PV P QP Sbjct: 657 KIYKIQKELEEK------RRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQP 700 >emb|CAA27981.1| complement C8-beta propetide /map='1p36.2- p22.1' /hgml_locus_uid='LE0166P' [Homo sapiens] Length = 545 Score = 30.5 bits (67), Expect = 4.9 Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 69 CNSKSAAVPSVLQPSQFHSPPC 90 C K +LQPSQFH PC Sbjct: 33 CQKKRYRYAYLLQPSQFHGEPC 54 >ref|NP_000057.1| complement component 8, beta polypeptide [Homo sapiens] pir||C8HUB complement C8 beta chain precursor [validated] - human gb|AAA51862.1| complement protein C8 beta subunit precursor emb|CAC18532.1| dJ1103B4.1 (complement component 8, beta polypeptide) [Homo sapiens] Length = 591 Score = 30.5 bits (67), Expect = 4.9 Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 69 CNSKSAAVPSVLQPSQFHSPPC 90 C K +LQPSQFH PC Sbjct: 79 CQKKRYRYAYLLQPSQFHGEPC 100 >sp|P07358|CO8B_HUMAN Complement component C8 beta chain precursor Length = 591 Score = 30.5 bits (67), Expect = 4.9 Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 69 CNSKSAAVPSVLQPSQFHSPPC 90 C K +LQPSQFH PC Sbjct: 79 CQKKRYRYAYLLQPSQFHGEPC 100 >pir||QQBE22 membrane antigen gp220 - human herpesvirus 4 (strain B95-8) Length = 710 Score = 30.1 bits (66), Expect = 5.3 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S VP+ L P +TA + TPAG T G +PV P P P Sbjct: 451 STHVPTNLTAPASTGPTVSTADVTSPTPAGTTSG-ASPVTPSPSP 494 >emb|CAB97351.1| MADS-box protein 3 [Hordeum vulgare subsp. vulgare] Length = 265 Score = 30.1 bits (66), Expect = 5.6 Identities = 15/38 (39%), Positives = 17/38 (44%) Query: 87 SPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQARN 124 SP TA P G R P+PQP+ AQA N Sbjct: 214 SPTPPTAQDSMAPPNIGPYQSRGGGDPEPQPSPAQANN 251 >emb|CAA77176.1| Bassoon protein [Homo sapiens] Length = 3851 Score = 30.1 bits (66), Expect = 6.2 Identities = 19/62 (30%), Positives = 23/62 (36%), Gaps = 6/62 (9%) Query: 67 INCNSKSA------AVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 +NC + A P Q HSP + A P G R+ P PQP S Sbjct: 143 LNCQMQRALGMDMTTAPRSKSQQQLHSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGSR 202 Query: 121 QA 122 QA Sbjct: 203 QA 204 >ref|NP_003449.1| bassoon; zinc finger protein 231; neuronal double zinc finger protein [Homo sapiens] gb|AAC83555.1| neuronal double zinc finger protein [Homo sapiens] Length = 3926 Score = 30.1 bits (66), Expect = 6.2 Identities = 19/62 (30%), Positives = 23/62 (36%), Gaps = 6/62 (9%) Query: 67 INCNSKSA------AVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 +NC + A P Q HSP + A P G R+ P PQP S Sbjct: 218 LNCQMQRALGMDMTTAPRSKSQQQLHSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGSR 277 Query: 121 QA 122 QA Sbjct: 278 QA 279 >ref|NP_841214.1| hypothetical protein [Nitrosomonas europaea ATCC 19718] emb|CAD85068.1| hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 297 Score = 30.1 bits (66), Expect = 6.6 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 45 YVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSV----LQPSQFHSP--PCTTAALLGN 98 ++ A +S DE + T + I+ + S+ PS L PS S P +GN Sbjct: 74 WIAADWLSDDEKLETSSTEISLSAVSPASSETPSTEPVPLLPSVGFSSDQPSENNPAIGN 133 Query: 99 TPAGGTPGYRAPVPPDPQPTSA 120 P G +A PDPQP A Sbjct: 134 VPDGDIGSDQAVQAPDPQPQRA 155 >ref|XP_221984.1| similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (Sialophorin) (CD43) (W3/13 antigen) [Rattus norvegicus] Length = 239 Score = 29.7 bits (65), Expect = 7.8 Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 7/63 (11%) Query: 66 AINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGG-------TPGYRAPVPPDPQPT 118 A++ NS A +P + P + SP T +TP G TP + P P+PT Sbjct: 40 ALSTNSSIAMLPGRVDPKESISPWRQTPVPASSTPLGTPELFSFETPADTSRSTPVPEPT 99 Query: 119 SAQ 121 ++Q Sbjct: 100 TSQ 102 >gb|AAD51698.1|AF172333_1 major outer envelope glycoprotein gp350 [Human herpesvirus 4] Length = 851 Score = 29.7 bits (65), Expect = 8.3 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S VP+ L P +TA + TPAG T G +PV P P P Sbjct: 451 STHVPTNLTAPASTGPTVSTADVTSPTPAGTTSG-ASPVTPSPSP 494 >ref|XP_140004.1| similar to Ferritin heavy chain (Ferritin H subunit) [Mus musculus] Length = 229 Score = 29.7 bits (65), Expect = 8.6 Identities = 14/46 (30%), Positives = 22/46 (47%) Query: 76 VPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQ 121 +P QP++ S A L ++ G P Y +PV P P P + + Sbjct: 66 IPRANQPNRKKSFAQKNAVKLPDSSTGSHPNYHSPVLPTPPPQTIE 111 >dbj|BAB40784.1| HrDoublecortin [Halocynthia roretzi] Length = 803 Score = 29.3 bits (64), Expect = 9.3 Identities = 30/113 (26%), Positives = 41/113 (35%), Gaps = 7/113 (6%) Query: 13 EHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAI-NCNS 71 ++V E N ++ NLP A EE E +A + I N N Sbjct: 687 DNVESNTLNEQEPN-EDQNNLPERDAADGTEESEGRDTRKSQESETNLAHASSIIDNSNE 745 Query: 72 KSAAVPSVLQPSQFHSPPC---TTAALLGNTPAGGTPGYRAPVPPDP--QPTS 119 + S + + + P T+ NTP TPG R P P QPTS Sbjct: 746 EGEKQRSGEESQEISNTPSARPATSESTENTPQDQTPGKRIDEQPIPNGQPTS 798 >ref|NP_013237.1| Zinc finger containing homolog of mammalian TIS11, glucose repressible gene; Tis11p [Saccharomyces cerevisiae] sp|P47977|CTH2_YEAST Zinc finger protein CTH2 (YTIS11 protein) pir||S59328 TIS11 protein - yeast (Saccharomyces cerevisiae) gb|AAB33266.1| Ytis11p [Saccharomyces cerevisiae] emb|CAA62651.1| L3143 [Saccharomyces cerevisiae] gb|AAB39898.1| zinc finger protein [Saccharomyces cerevisiae] gb|AAB82400.1| Tis11p [Saccharomyces cerevisiae] emb|CAA97707.1| ORF YLR136c [Saccharomyces cerevisiae] Length = 285 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/87 (22%), Positives = 40/87 (44%), Gaps = 3/87 (3%) Query: 38 DARQVEEYVFAKCMSKDEYMRTIAKVINAINCN---SKSAAVPSVLQPSQFHSPPCTTAA 94 + R++EEY +++D T +++ +A++ + + +A P +L Q +P +A Sbjct: 38 NIRELEEYYNKTILNEDNIQETSSEISSAVSFSPPKNTNAIQPGLLYDPQLMNPFLPSAH 97 Query: 95 LLGNTPAGGTPGYRAPVPPDPQPTSAQ 121 L P + PD P S+Q Sbjct: 98 LNSTAPTTFKKKLEVQINPDYVPKSSQ 124 >ref|NP_150289.1| protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Women's Genetics 1012 expressed [Mus musculus] gb|AAK48713.1|AF324451_1 TARPP [Mus musculus] Length = 807 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPCT--TAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 733 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 769 Searching..................................................done Results from round 4 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 211 1e-54 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 204 2e-52 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 168 1e-41 sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associ... 137 4e-32 ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associate... 134 2e-31 gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein... 125 1e-28 ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associate... 120 3e-27 gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 120 3e-27 dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 120 4e-27 sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 120 5e-27 ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] >gi|5052530... 90 6e-18 Sequences not found previously or not previously below threshold: ref|XP_147188.1| positive cofactor 2, multiprotein complex, glut... 108 1e-23 gb|AAC12944.1| TPA inducible protein [Homo sapiens] 87 6e-17 gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein... 86 7e-17 gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] 80 4e-15 pir||D86302 hypothetical protein F17F16.9 - Arabidopsis thaliana... 35 0.14 ref|NP_564004.1| expressed protein [Arabidopsis thaliana] >gi|21... 35 0.15 emb|CAD70476.1| related to two-component histidine kinase chk-1 ... 34 0.34 ref|NP_509376.1| KIX domain containing protein family member [Ca... 34 0.36 ref|NP_650035.1| CG14696-PA [Drosophila melanogaster] >gi|729938... 33 0.52 ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] 33 0.58 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 33 0.68 ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] 33 0.81 ref|NP_778415.1| anthranilate synthase component I [Xylella fast... 33 0.81 emb|CAC67410.1| lupanine hydroxylase [Pseudomonas sp. DH2001] 33 0.93 ref|NP_297503.1| anthranilate synthase component I [Xylella fast... 33 1.1 ref|NP_004681.1| LATS homolog 1 [Homo sapiens] >gi|4324434|gb|AA... 33 1.1 ref|NP_497144.1| TAZ zinc finger family member [Caenorhabditis e... 32 1.2 sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associated ... 32 1.5 ref|NP_773328.1| bll6688 [Bradyrhizobium japonicum] >gi|27354968... 32 1.5 ref|NP_642678.1| conserved hypothetical protein [Xanthomonas axo... 32 1.6 gb|EAA41508.1| GLP_623_40575_38077 [Giardia lamblia ATCC 50803] 32 1.9 ref|ZP_00107060.1| hypothetical protein [Nostoc punctiforme] 32 2.5 ref|NP_009546.1| Involved in assembly of cortical actin cytoskel... 31 2.8 ref|NP_150289.1| protein phosphatase 1, regulatory (inhibitory) ... 31 3.0 dbj|BAC27918.1| unnamed protein product [Mus musculus] 31 3.2 emb|CAA64722.1| homologous to synapsin I [Drosophila melanogaster] 31 3.3 ref|NP_004371.1| CREB binding protein [Homo sapiens] >gi|3023440... 31 3.5 gb|AAC51331.2| CREB-binding protein [Homo sapiens] 31 3.5 ref|NP_851896.1| very large tegument protein [Cercopithecine her... 31 3.6 gb|AAH53001.1| Ppp1r1c protein [Mus musculus] 31 3.9 emb|CAB97351.1| MADS-box protein 3 [Hordeum vulgare subsp. vulgare] 31 4.1 dbj|BAC27859.1| unnamed protein product [Mus musculus] 30 4.4 sp|Q24546|SYN_DROME Synapsin >gi|1419487|emb|CAA64723.1| homolog... 30 4.5 ref|NP_628010.1| serine/threonine protein kinase [Streptomyces c... 30 5.0 gb|AAH22954.1| Syn1 protein [Mus musculus] 30 5.2 ref|XP_318888.1| ENSANGP00000023042 [Anopheles gambiae] >gi|3017... 30 5.9 pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila... 30 8.2 ref|NP_572465.1| CG2147-PA [Drosophila melanogaster] >gi|7290911... 30 8.4 gb|AAC08447.1| CBP [Homo sapiens] 30 9.6 >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 211 bits (538), Expect = 1e-54 Identities = 124/124 (100%), Positives = 124/124 (100%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 Query: 121 QARN 124 QARN Sbjct: 121 QARN 124 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 204 bits (518), Expect = 2e-52 Identities = 121/124 (97%), Positives = 121/124 (97%), Gaps = 3/124 (2%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA GNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA---GNTPAGGTPGYRAPVPPDPQPTSA 117 Query: 121 QARN 124 QARN Sbjct: 118 QARN 121 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 168 bits (426), Expect = 1e-41 Identities = 104/124 (83%), Positives = 104/124 (83%), Gaps = 20/124 (16%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA DPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA--------------------DPQPTSA 100 Query: 121 QARN 124 QARN Sbjct: 101 QARN 104 >sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 137 bits (344), Expect = 4e-32 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRG 105 >ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associated protein [Mus musculus] gb|AAK58424.1|AF328770_1 PC2-glutamine-rich-associated protein [Mus musculus] Length = 667 Score = 134 bits (338), Expect = 2e-31 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRG 105 >gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Danio rerio] Length = 809 Score = 125 bits (314), Expect = 1e-28 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 20/112 (17%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 + DW SP FR+ V+ ++E + + + ++E +VF K +++EY+ +A+ Sbjct: 7 DSDWRSPAFRQKVVAQIEEAMRKAGTGHTK-----SSTEMESHVFTKAKTREEYLSMVAR 61 Query: 63 V-INAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPP 113 + I+ + + K+ P + Q N P GG PG P PP Sbjct: 62 LIIHFRDIHKKAQGGPDPINALQ-------------NLP-GGVPGVIGPRPP 99 >ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA inducible protein; TPA inducible gene-1; PC2-glutamine-rich-associated protein; trinucleotide repeat containing 7 [Homo sapiens] gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Homo sapiens] Length = 748 Score = 120 bits (302), Expect = 3e-27 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRG 105 >gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens] Length = 746 Score = 120 bits (302), Expect = 3e-27 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRG 105 >dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] Length = 811 Score = 120 bits (301), Expect = 4e-27 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 30 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 84 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 85 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRG 128 >sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a) Length = 788 Score = 120 bits (300), Expect = 5e-27 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRG 105 >ref|XP_147188.1| positive cofactor 2, multiprotein complex, glutamine/Q-rich-associated protein [Mus musculus] Length = 763 Score = 108 bits (270), Expect = 1e-23 Identities = 19/79 (24%), Positives = 34/79 (42%), Gaps = 4/79 (5%) Query: 28 QNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI---NAINCNSKSAAVPSVLQPSQ 84 + ++ +E +VF K ++DEY+ +A++I I+ A+V + Q Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 -FHSPPCTTAALLGNTPAG 102 P AA +G P G Sbjct: 61 SLTGGPTPGAAGIGMPPRG 79 >ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] gb|AAD38595.1|AF145620_1 BcDNA.GH03922 [Drosophila melanogaster] gb|AAF51490.1| CG4184-PA [Drosophila melanogaster] Length = 749 Score = 89.7 bits (221), Expect = 6e-18 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Query: 4 EDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKV 63 EDW S KFR++VI ++ L N Q+ +A +E ++F K +KDEY+ +AK+ Sbjct: 3 EDWQSQKFRQNVISKIHDLLPPNAQDQTK-----NAGVMENHIFRKSRTKDEYLGLVAKL 57 Query: 64 INAINCNSKSAAVPSVLQPSQFHSPPCTTAALLG 97 ++ S Q Q P A + G Sbjct: 58 --FMHYKDMSRKSQQQQQQQQQQGGPPPNAEMGG 89 >gb|AAC12944.1| TPA inducible protein [Homo sapiens] Length = 579 Score = 86.6 bits (213), Expect = 6e-17 Identities = 19/79 (24%), Positives = 34/79 (42%), Gaps = 4/79 (5%) Query: 28 QNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI---NAINCNSKSAAVPSVLQPSQ 84 + ++ +E +VF K ++DEY+ +A++I I+ A+V + Q Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 -FHSPPCTTAALLGNTPAG 102 P AA +G P G Sbjct: 61 SLTGGPAAGAAGIGMPPRG 79 >gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Xenopus laevis] Length = 846 Score = 86.3 bits (212), Expect = 7e-17 Identities = 11/75 (14%), Positives = 31/75 (40%), Gaps = 8/75 (10%) Query: 13 EHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI---NAINC 69 + ++ +++ + ++++E +VF K +++EY+ +A++I I Sbjct: 1 QKLVSQIDE-----AMRKAGVAHTKSSKEMESHVFLKAKTREEYLSLVARLIIHFRDIFN 55 Query: 70 NSKSAAVPSVLQPSQ 84 A + Q Sbjct: 56 KKNQTAASDPMNALQ 70 >gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] Length = 754 Score = 80.5 bits (197), Expect = 4e-15 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 28 QNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI---NAINCNSKSAAVPSVLQPSQ 84 + ++ +E +VF K +++EY+ +A++I I AA + Q Sbjct: 1 MRKAGVAHTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDPMNALQ 60 >pir||D86302 hypothetical protein F17F16.9 - Arabidopsis thaliana gb|AAG09088.1|AC026237_9 Hypothetical protein [Arabidopsis thaliana] Length = 238 Score = 35.4 bits (80), Expect = 0.14 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 12 REHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYM------RTIAKVIN 65 R+ + +LE +A A+++EE +F M+K+EY+ + +I Sbjct: 13 RDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNPSTLESRLTSLIK 72 Query: 66 AINCNS 71 N Sbjct: 73 GRQLNK 78 >ref|NP_564004.1| expressed protein [Arabidopsis thaliana] gb|AAM67290.1| unknown [Arabidopsis thaliana] Length = 128 Score = 35.4 bits (80), Expect = 0.15 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 12 REHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYM------RTIAKVIN 65 R+ + +LE +A A+++EE +F M+K+EY+ + +I Sbjct: 13 RDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNPSTLESRLTSLIK 72 Query: 66 AINCNS 71 N Sbjct: 73 GRQLNK 78 >emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa] gb|EAA27381.1| hypothetical protein [Neurospora crassa] Length = 2177 Score = 34.3 bits (77), Expect = 0.34 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 74 AAVPSVLQPSQFHSPPCTTAALLGNTPAGG-TPGYRAPVPPDPQPTSAQA 122 A+ PS P Q S P TT+ GNT GG TPG A P P P A + Sbjct: 275 ASSPSPQLP-QSGSEPTTTSTESGNTIRGGVTPGLTARTPSYPFPRMASS 323 >ref|NP_509376.1| KIX domain containing protein family member [Caenorhabditis elegans] pir||T16139 hypothetical protein F22F1.3 - Caenorhabditis elegans gb|AAA83283.1| Hypothetical protein F22F1.3 [Caenorhabditis elegans] Length = 295 Score = 34.3 bits (77), Expect = 0.36 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Query: 12 REHVIQRL-EPELARNRQNAPNLPVPGDARQ----VEEYVFAKCMSKDEYMRTIAKVI 64 R+++I ++ + R +A N + ++ +E+ F K +KDEY +A++I Sbjct: 71 RQYMITKIVREAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELARII 128 >ref|NP_650035.1| CG14696-PA [Drosophila melanogaster] gb|AAF54577.1| CG14696-PA [Drosophila melanogaster] Length = 457 Score = 33.5 bits (75), Expect = 0.52 Identities = 14/42 (33%), Positives = 21/42 (49%) Query: 77 PSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPT 118 P+ + P+ SPP TT + + P G +PPD +PT Sbjct: 401 PNPVSPAAQKSPPYTTNTPVASPPGGNFEVLGFSIPPDYKPT 442 >ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] Length = 501 Score = 33.5 bits (75), Expect = 0.58 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 14/100 (14%) Query: 18 RLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVP 77 RL+ + R RQ + P + + E F +++++Y + K + VP Sbjct: 198 RLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQVVP 257 Query: 78 SVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S +QFH+ P YRA +P P Sbjct: 258 SQRLCTQFHARP--------------VDVYRALRTLNPSP 283 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 33.1 bits (74), Expect = 0.68 Identities = 19/87 (21%), Positives = 39/87 (43%), Gaps = 18/87 (20%) Query: 4 EDWPSP---KFREHVIQRLEPELARNRQNAPNLPVPGD---------ARQVEEYVFAKCM 51 DW +P R+ ++ ++ L R+ LP G A + EE +F Sbjct: 15 SDWRNPLSHDSRQRIVNKIMDTLKRH------LPFSGPEGLNELKRIADRFEEKIFTSAT 68 Query: 52 SKDEYMRTIAKVINAINCNSKSAAVPS 78 S+ +Y+R I+ + ++ S++A+ + Sbjct: 69 SQSDYLRKISLKMLSMESRSQNASGSN 95 >ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] Length = 501 Score = 33.1 bits (74), Expect = 0.81 Identities = 17/72 (23%), Positives = 31/72 (42%) Query: 18 RLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVP 77 RL+ + R RQ + P + + E F +++++Y + K + VP Sbjct: 198 RLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQVVP 257 Query: 78 SVLQPSQFHSPP 89 S +QFH+ P Sbjct: 258 SQRLCTQFHARP 269 >ref|NP_778415.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] gb|AAO28064.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] Length = 491 Score = 33.1 bits (74), Expect = 0.81 Identities = 17/72 (23%), Positives = 31/72 (42%) Query: 18 RLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVP 77 RL+ + R RQ + P + + E F +++++Y + K + VP Sbjct: 188 RLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQVVP 247 Query: 78 SVLQPSQFHSPP 89 S +QFH+ P Sbjct: 248 SQRLCTQFHARP 259 >emb|CAC67410.1| lupanine hydroxylase [Pseudomonas sp. DH2001] Length = 695 Score = 32.7 bits (73), Expect = 0.93 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%) Query: 75 AVPSVLQPSQFHSPPCTTAALLG---NTPAGGTPGYRAPVPPDPQPTSAQARN 124 +P ++ Q P A LG P TP + P P P+PTSA A + Sbjct: 552 GIPRLMNNLQSQGPARLLAFRLGGKTELPITSTPDF--PKPQYPKPTSAMAES 602 >ref|NP_297503.1| anthranilate synthase component I [Xylella fastidiosa 9a5c] pir||A82835 anthranilate synthase component I XF0210 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83023.1|AE003874_7 anthranilate synthase component I [Xylella fastidiosa 9a5c] Length = 487 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/74 (21%), Positives = 33/74 (43%) Query: 16 IQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAA 75 ++RL+ + R RQ + P + + E F +++++Y + + + Sbjct: 182 VERLDVLIYRLRQGGVDYPHSHISEVINEEDFHSSLTREQYHAVVRQAQEYVRSGDIFQV 241 Query: 76 VPSVLQPSQFHSPP 89 VPS +QFH+ P Sbjct: 242 VPSQRLCTQFHARP 255 >ref|NP_004681.1| LATS homolog 1 [Homo sapiens] gb|AAD16882.1| large tumor suppressor 1 [Homo sapiens] gb|AAD50272.1|AF164041_1 WARTS protein kinase [Homo sapiens] Length = 1130 Score = 32.7 bits (73), Expect = 1.1 Identities = 13/42 (30%), Positives = 19/42 (44%), Gaps = 1/42 (2%) Query: 76 VPSVLQPSQFHSPPCTTAALLG-NTPAGGTPGYRAPVPPDPQ 116 +P +Q Q P TA+ + P P Y+ P PP P+ Sbjct: 520 IPQPIQTVQPSPFPEGTASNVTVMPPVAEAPNYQGPPPPYPK 561 >ref|NP_497144.1| TAZ zinc finger family member [Caenorhabditis elegans] pir||T33579 hypothetical protein C29F9.6 - Caenorhabditis elegans gb|AAC68748.1| Hypothetical protein C29F9.6 [Caenorhabditis elegans] Length = 228 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 12 REHVIQRLEPELARNRQN-APNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 RE VI+R+ + + Q P + DAR E +F S+DEY R + Sbjct: 129 REAVIERISKHIMLHPQRFEPIWKIKEDARAAELQIFEAAGSRDEYYRMV 178 >sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associated protein (PUMA1) pir||T30934 myosin-like protein - Parascaris univalens gb|AAC38995.1| PUMA1 [Parascaris univalens] Length = 1955 Score = 32.3 bits (72), Expect = 1.5 Identities = 17/56 (30%), Positives = 27/56 (47%) Query: 13 EHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAIN 68 E+ Q+LE E+ R G+ R VEE K + +DEY I+++ +N Sbjct: 470 ENARQQLEEEVRRLTLQVDQSKADGERRVVEEGEIQKRIVEDEYRSMISELTRRMN 525 >ref|NP_773328.1| bll6688 [Bradyrhizobium japonicum] dbj|BAC51953.1| bll6688 [Bradyrhizobium japonicum USDA 110] Length = 401 Score = 32.3 bits (72), Expect = 1.5 Identities = 18/55 (32%), Positives = 25/55 (44%), Gaps = 3/55 (5%) Query: 72 KSAAVPSVLQPSQFHSPP-CTTAALLGNTPAG--GTPGYRAPVPPDPQPTSAQAR 123 + A L+P + P T A G P G G P A +PP+ QP +A A+ Sbjct: 151 QQAPGSDGLRPPEAVGGPAATGAVQAGQPPVGADGRPMAIASLPPEEQPDAAPAQ 205 >ref|NP_642678.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37214.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 187 Score = 31.9 bits (71), Expect = 1.6 Identities = 13/37 (35%), Positives = 14/37 (37%) Query: 79 VLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDP 115 P Q P T A + G TP G P PDP Sbjct: 150 PAGPRQNRRAPTTGAVVGGMTPNGRIPAPLMDHDPDP 186 >gb|EAA41508.1| GLP_623_40575_38077 [Giardia lamblia ATCC 50803] Length = 832 Score = 31.9 bits (71), Expect = 1.9 Identities = 14/73 (19%), Positives = 30/73 (40%), Gaps = 5/73 (6%) Query: 22 ELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSV-- 79 ++ +R D ++ +F+ +EY T+ I+ + ++ A+ P+ Sbjct: 281 AMSPHRSVKQTPTSKADVSPMQRSIFSASRDAEEYFSTLPYSISDRDPSTTEASHPAPSF 340 Query: 80 LQPSQFHSPPCTT 92 + PS SPP Sbjct: 341 VAPS---SPPGPG 350 >ref|ZP_00107060.1| hypothetical protein [Nostoc punctiforme] Length = 591 Score = 31.6 bits (70), Expect = 2.5 Identities = 15/46 (32%), Positives = 19/46 (40%) Query: 72 KSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 +A+V LQP + S P A+ L G P P P QP Sbjct: 281 SAASVSQALQPLEQVSLPPLNASNLQTMAVGRRPDSIPPASPKKQP 326 >ref|NP_009546.1| Involved in assembly of cortical actin cytoskeleton, contains 3 SH3 domains, interacts with Bee1p; Sla1p [Saccharomyces cerevisiae] sp|P32790|SLA1_YEAST Cytoskeleton assembly control protein SLA1 pir||S25327 cytoskeleton assembly control protein SLA1 - yeast (Saccharomyces cerevisiae) gb|AAB23985.1| YBL03-21 [Saccharomyces cerevisiae] emb|CAA80463.1| synthetical lethal with ABP1 [Saccharomyces cerevisiae] emb|CAA84826.1| ORF YBL007c [Saccharomyces cerevisiae] Length = 1244 Score = 31.2 bits (69), Expect = 2.8 Identities = 25/109 (22%), Positives = 40/109 (35%), Gaps = 10/109 (9%) Query: 17 QRLEPELARNRQNAPNLPVPGD-------ARQVEEYVFAKCMSKDEYMRTIAKVINAINC 69 Q+L P+ Q AP+ D A + E + +K K E+ ++ +++ Sbjct: 753 QQLLPQTTSPAQTAPSTSAETDDAWTVKPASKSESNLLSK---KSEFTGSMQDLLDLQPL 809 Query: 70 NSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPT 118 K AA + + P T + P P AP P DP T Sbjct: 810 EPKKAAASTPEPNLKDLEPVKTGGTTVPAAPVSSAPVSSAPAPLDPFKT 858 >ref|NP_150289.1| protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Women's Genetics 1012 expressed [Mus musculus] gb|AAK48713.1|AF324451_1 TARPP [Mus musculus] Length = 807 Score = 31.2 bits (69), Expect = 3.0 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 733 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 769 >dbj|BAC27918.1| unnamed protein product [Mus musculus] Length = 771 Score = 31.2 bits (69), Expect = 3.2 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 697 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 733 >emb|CAA64722.1| homologous to synapsin I [Drosophila melanogaster] Length = 537 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 17/98 (17%) Query: 39 ARQVEEYVFAKCM--------SKDEYMRTIAKVINAINCN----SKSAAVPSVLQ----- 81 A+ EY+ + C +++E R IA +++ N S + P L Sbjct: 355 AKDGREYIISACNSTFALIGDTQEEDRRQIADLVSGRMQNVCRPSMAQTGPGKLPSRSSV 414 Query: 82 PSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTS 119 S+ SP A PAG P PP P+ TS Sbjct: 415 SSRAESPTDEGVAPTPPLPAGPRPAPMGGPPPIPERTS 452 >ref|NP_004371.1| CREB binding protein [Homo sapiens] sp|Q92793|CBP_HUMAN CREB-binding protein gb|AAC51770.1| CREB-binding protein Length = 2442 Score = 30.8 bits (68), Expect = 3.5 Identities = 26/105 (24%), Positives = 42/105 (39%), Gaps = 12/105 (11%) Query: 14 HVIQRLEPELARNRQNAPNLPVPGD-ARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSK 72 ++Q + P + A++VE ++ S+DEY +A+ I I + Sbjct: 607 KLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELE 666 Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 + S+ H +LGN PA PG + PV P QP Sbjct: 667 EK------RRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQP 700 >gb|AAC51331.2| CREB-binding protein [Homo sapiens] Length = 2442 Score = 30.8 bits (68), Expect = 3.5 Identities = 26/105 (24%), Positives = 42/105 (39%), Gaps = 12/105 (11%) Query: 14 HVIQRLEPELARNRQNAPNLPVPGD-ARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSK 72 ++Q + P + A++VE ++ S+DEY +A+ I I + Sbjct: 607 KLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELE 666 Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 + S+ H +LGN PA PG + PV P QP Sbjct: 667 EK------RRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQP 700 >ref|NP_851896.1| very large tegument protein [Cercopithecine herpesvirus 1] gb|AAP41454.1| very large tegument protein [Cercopithecine herpesvirus 1] Length = 3288 Score = 30.8 bits (68), Expect = 3.6 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 6/50 (12%) Query: 77 PSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPV----PPDPQPTSAQA 122 P+ P+ PP A TPAG P P PP P P A A Sbjct: 495 PTPANPTASSEPPTP--AGRPPTPAGRPPTPANPTASSEPPTPNPEGAPA 542 >gb|AAH53001.1| Ppp1r1c protein [Mus musculus] Length = 809 Score = 30.8 bits (68), Expect = 3.9 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 735 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 771 >emb|CAB97351.1| MADS-box protein 3 [Hordeum vulgare subsp. vulgare] Length = 265 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/38 (39%), Positives = 17/38 (44%) Query: 87 SPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQARN 124 SP TA P G R P+PQP+ AQA N Sbjct: 214 SPTPPTAQDSMAPPNIGPYQSRGGGDPEPQPSPAQANN 251 >dbj|BAC27859.1| unnamed protein product [Mus musculus] Length = 789 Score = 30.4 bits (67), Expect = 4.4 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 715 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 751 >sp|Q24546|SYN_DROME Synapsin emb|CAA64723.1| homologous to synapsin I [Drosophila melanogaster] Length = 980 Score = 30.4 bits (67), Expect = 4.5 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 17/98 (17%) Query: 39 ARQVEEYVFAKCM--------SKDEYMRTIAKVINAINCN----SKSAAVPSVLQ----- 81 A+ EY+ + C +++E R IA +++ N S + P L Sbjct: 355 AKDGREYIISACNSTFALIGDTQEEDRRQIADLVSGRMQNVCRPSMAQTGPGKLPSRSSV 414 Query: 82 PSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTS 119 S+ SP A PAG P PP P+ TS Sbjct: 415 SSRAESPTDEGVAPTPPLPAGPRPAPMGGPPPIPERTS 452 >ref|NP_628010.1| serine/threonine protein kinase [Streptomyces coelicolor A3(2)] sp|Q9S2C0|PKSC_STRCO Serine/threonine protein kinase pksC pir||T36502 serine/threonine protein kinase - Streptomyces coelicolor emb|CAB46944.1| serine/threonine protein kinase [Streptomyces coelicolor A3(2)] Length = 556 Score = 30.4 bits (67), Expect = 5.0 Identities = 23/73 (31%), Positives = 31/73 (41%), Gaps = 12/73 (16%) Query: 53 KDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAG-GTPGYRAPV 111 +DE +R A S AA PS++ +Q S +A+ P G GTP PV Sbjct: 283 RDECLRVAA---------SFQAAPPSIVPGAQTSSGAGVGSAVF--PPVGQGTPAPTGPV 331 Query: 112 PPDPQPTSAQARN 124 QPT + N Sbjct: 332 QTPYQPTPSPGPN 344 >gb|AAH22954.1| Syn1 protein [Mus musculus] Length = 678 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/52 (26%), Positives = 20/52 (37%), Gaps = 1/52 (1%) Query: 72 KSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQAR 123 + A P + + S P A+ G P G P + P P P P A+ Sbjct: 556 RQAGAPQATRQASI-SGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAK 606 >ref|XP_318888.1| ENSANGP00000023042 [Anopheles gambiae] gb|EAA43518.1| ENSANGP00000023042 [Anopheles gambiae str. PEST] Length = 71 Score = 30.0 bits (66), Expect = 5.9 Identities = 23/68 (33%), Positives = 27/68 (38%), Gaps = 4/68 (5%) Query: 46 VFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTP 105 VF C+ Y RT +IN IN S + +P Q HS L N P T Sbjct: 5 VFLVCVPTANYERT---LINGINYASNNEQLPPPESTPQQHS-TTPARNLNINLPENVTQ 60 Query: 106 GYRAPVPP 113 G R P P Sbjct: 61 GPRGPRTP 68 >pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila melanogaster) gb|AAB53050.1| CREB-binding protein homolog [Drosophila melanogaster] Length = 3190 Score = 29.6 bits (65), Expect = 8.2 Identities = 16/74 (21%), Positives = 32/74 (42%), Gaps = 8/74 (10%) Query: 2 SEEDWP---SPKFREHVIQRLEPELARNR-----QNAPNLPVPGDARQVEEYVFAKCMSK 53 +E+DW + R H++ +L + Q+ + A +VE+ ++ S+ Sbjct: 939 NEKDWRESVTADLRNHLVHKLVQAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMYEMAKSR 998 Query: 54 DEYMRTIAKVINAI 67 EY +A+ I I Sbjct: 999 SEYYHLLAEKIYKI 1012 >ref|NP_572465.1| CG2147-PA [Drosophila melanogaster] gb|AAF46352.1| CG2147-PA [Drosophila melanogaster] gb|AAL39867.1| LP02728p [Drosophila melanogaster] Length = 165 Score = 29.6 bits (65), Expect = 8.4 Identities = 14/45 (31%), Positives = 19/45 (42%) Query: 80 LQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQARN 124 + P Q S P P+G PG P DP P SA +++ Sbjct: 13 INPQQVASVPPPPPTGQIIAPSGAFPGSLTPGWNDPPPISADSQS 57 >gb|AAC08447.1| CBP [Homo sapiens] Length = 555 Score = 29.6 bits (65), Expect = 9.6 Identities = 26/105 (24%), Positives = 42/105 (39%), Gaps = 12/105 (11%) Query: 14 HVIQRLEPELARNRQNAPNLPVPGD-ARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSK 72 ++Q + P + A++VE ++ S+DEY +A+ I I + Sbjct: 341 KLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELE 400 Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 + S+ H +LGN PA PG + PV P QP Sbjct: 401 EK------RRSRLHK-----QGILGNQPALPAPGAQPPVIPQAQP 434 Searching..................................................done Results from round 5 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 202 5e-52 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 195 9e-50 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 160 4e-39 sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associ... 142 6e-34 ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associate... 140 4e-33 ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associate... 123 4e-28 gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 123 4e-28 dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 123 5e-28 sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 122 7e-28 gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein... 122 7e-28 ref|XP_147188.1| positive cofactor 2, multiprotein complex, glut... 114 2e-25 ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] >gi|5052530... 111 2e-24 gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein... 97 3e-20 gb|AAC12944.1| TPA inducible protein [Homo sapiens] 90 4e-18 gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] 89 1e-17 Sequences not found previously or not previously below threshold: ref|ZP_00107060.1| hypothetical protein [Nostoc punctiforme] 37 0.071 ref|NP_509376.1| KIX domain containing protein family member [Ca... 37 0.075 ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] 36 0.11 gb|EAA30856.1| predicted protein [Neurospora crassa] 36 0.12 ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] 35 0.15 ref|NP_778415.1| anthranilate synthase component I [Xylella fast... 35 0.15 pir||D86302 hypothetical protein F17F16.9 - Arabidopsis thaliana... 35 0.20 ref|NP_297503.1| anthranilate synthase component I [Xylella fast... 35 0.21 emb|CAD70476.1| related to two-component histidine kinase chk-1 ... 35 0.21 ref|NP_564004.1| expressed protein [Arabidopsis thaliana] >gi|21... 35 0.24 ref|NP_642678.1| conserved hypothetical protein [Xanthomonas axo... 35 0.30 dbj|BAC65994.1| B1123E10.21 [Oryza sativa (japonica cultivar-gro... 34 0.45 gb|AAH46717.1| Similar to zinc finger protein 162 [Xenopus laevis] 34 0.45 dbj|BAA32465.3| MEGF4 [Homo sapiens] 34 0.45 emb|CAC67410.1| lupanine hydroxylase [Pseudomonas sp. DH2001] 33 0.68 ref|XP_318888.1| ENSANGP00000023042 [Anopheles gambiae] >gi|3017... 33 1.0 sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associated ... 33 1.1 sp|P38370|OAR_MYXXA OAR PROTEIN PRECURSOR >gi|476790|pir||A40609... 33 1.1 gb|AAH22954.1| Syn1 protein [Mus musculus] 32 1.3 ref|NP_650035.1| CG14696-PA [Drosophila melanogaster] >gi|729938... 32 1.3 sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 >gi|1698504... 32 1.4 gb|EAA33685.1| hypothetical protein [Neurospora crassa] 32 1.5 ref|NP_635853.1| anthranilate synthase component I [Xanthomonas ... 32 1.7 ref|NP_572465.1| CG2147-PA [Drosophila melanogaster] >gi|7290911... 32 1.7 gb|AAF08805.1|AF192747_1 synapsin Ia [Lampetra fluviatilis] 32 1.9 ref|NP_773328.1| bll6688 [Bradyrhizobium japonicum] >gi|27354968... 32 2.0 gb|AAH51828.1| Similar to protein phosphatase 1, regulatory (inh... 32 2.0 ref|NP_640831.1| anthranilate synthase component I [Xanthomonas ... 32 2.0 ref|NP_497144.1| TAZ zinc finger family member [Caenorhabditis e... 32 2.0 gb|AAF08806.1|AF192748_1 synapsin Ib [Lampetra fluviatilis] 32 2.1 ref|NP_004681.1| LATS homolog 1 [Homo sapiens] >gi|4324434|gb|AA... 32 2.5 pir||T18235 transcription activator GAL11 homolog - yeast (Candi... 32 2.5 ref|NP_830846.1| Collagen adhesion protein [Bacillus cereus ATCC... 31 2.9 ref|NP_150289.1| protein phosphatase 1, regulatory (inhibitory) ... 31 2.9 pir||G72580 hypothetical protein APE1926 - Aeropyrum pernix (str... 31 3.1 dbj|BAC27918.1| unnamed protein product [Mus musculus] 31 3.2 ref|NP_004371.1| CREB binding protein [Homo sapiens] >gi|3023440... 31 3.2 gb|AAC51331.2| CREB-binding protein [Homo sapiens] 31 3.2 pir||T42644 hypothetical protein DKFZp566N1047.1 - human (fragme... 31 3.4 gb|AAH53001.1| Ppp1r1c protein [Mus musculus] 31 3.8 ref|NP_035481.1| sema domain, transmembrane domain (TM), and cyt... 31 3.9 dbj|BAC27859.1| unnamed protein product [Mus musculus] 31 4.4 gb|AAK52051.1|AF363973_1 semaphorin 6C [Mus musculus] 30 4.4 gb|AAL99670.1|AF363972_1 semaphorin 6C short isoform 2 [Mus musc... 30 4.5 gb|EAA32551.1| hypothetical protein [Neurospora crassa] 30 5.6 gb|AAK95420.1| BPLF1 [cercopithicine herpesvirus 15] 30 5.9 ref|NP_609969.1| CG10034-PA [Drosophila melanogaster] >gi|229468... 30 6.5 emb|CAC18237.2| probable Tim22, subunit of the Tim22-complex [Ne... 30 6.7 gb|AAL84238.1|AF455111_1 ataxin-7 [Mus musculus] 30 7.7 emb|CAB97351.1| MADS-box protein 3 [Hordeum vulgare subsp. vulgare] 30 8.2 ref|NP_631973.2| spinocerebellar ataxia 7 homolog [Mus musculus]... 30 8.2 ref|XP_236662.1| similar to protein phosphatase 1, regulatory (i... 30 8.9 ref|NP_194990.1| expressed protein [Arabidopsis thaliana] >gi|13... 30 9.1 gb|AAN17675.1| MLL5 [Homo sapiens] 30 9.5 pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila... 30 9.6 ref|NP_061152.2| myeloid/lymphoid or mixed-lineage leukemia 5 (t... 30 9.6 gb|AAN76325.1| myeloid/lymphoid or mixed-lineage leukemia 5 [Hom... 30 9.6 gb|AAC08447.1| CBP [Homo sapiens] 30 9.6 CONVERGED! >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 202 bits (515), Expect = 5e-52 Identities = 124/124 (100%), Positives = 124/124 (100%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 Query: 121 QARN 124 QARN Sbjct: 121 QARN 124 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 195 bits (496), Expect = 9e-50 Identities = 121/124 (97%), Positives = 121/124 (97%), Gaps = 3/124 (2%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA GNTPAGGTPGYRAPVPPDPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA---GNTPAGGTPGYRAPVPPDPQPTSA 117 Query: 121 QARN 124 QARN Sbjct: 118 QARN 121 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 160 bits (404), Expect = 4e-39 Identities = 104/124 (83%), Positives = 104/124 (83%), Gaps = 20/124 (16%) Query: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI Sbjct: 1 MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 Query: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA DPQPTSA Sbjct: 61 AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA--------------------DPQPTSA 100 Query: 121 QARN 124 QARN Sbjct: 101 QARN 104 >sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 142 bits (359), Expect = 6e-34 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRG 105 >ref|NP_291087.1| positive cofactor 2, glutamine/Q-rich-associated protein [Mus musculus] gb|AAK58424.1|AF328770_1 PC2-glutamine-rich-associated protein [Mus musculus] Length = 667 Score = 140 bits (352), Expect = 4e-33 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSAAFRLKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRG 105 >ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA inducible protein; TPA inducible gene-1; PC2-glutamine-rich-associated protein; trinucleotide repeat containing 7 [Homo sapiens] gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Homo sapiens] Length = 748 Score = 123 bits (309), Expect = 4e-28 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRG 105 >gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens] Length = 746 Score = 123 bits (309), Expect = 4e-28 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRG 105 >dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] Length = 811 Score = 123 bits (308), Expect = 5e-28 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 30 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 84 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 85 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRG 128 >sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a) Length = 788 Score = 122 bits (307), Expect = 7e-28 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 E DW S FR+ ++ ++E + ++ +E +VF K ++DEY+ +A+ Sbjct: 7 ETDWRSTAFRQKLVSQIED-----AMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVAR 61 Query: 63 VI---NAINCNSKSAAVPSVLQPSQ-FHSPPCTTAALLGNTPAG 102 +I I+ A+V + Q P AA +G P G Sbjct: 62 LIIHFRDIHNKKSQASVSDPMNALQSLTGGPAAGAAGIGMPPRG 105 >gb|AAH45472.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Danio rerio] Length = 809 Score = 122 bits (307), Expect = 7e-28 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 20/112 (17%) Query: 3 EEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAK 62 + DW SP FR+ V+ ++E + ++E +VF K +++EY+ +A+ Sbjct: 7 DSDWRSPAFRQKVVAQIEE-----AMRKAGTGHTKSSTEMESHVFTKAKTREEYLSMVAR 61 Query: 63 V-INAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPP 113 + I+ + + K+ P + Q N P GG PG P PP Sbjct: 62 LIIHFRDIHKKAQGGPDPINALQ-------------NLP-GGVPGVIGPRPP 99 >ref|XP_147188.1| positive cofactor 2, multiprotein complex, glutamine/Q-rich-associated protein [Mus musculus] Length = 763 Score = 114 bits (285), Expect = 2e-25 Identities = 19/79 (24%), Positives = 34/79 (42%), Gaps = 4/79 (5%) Query: 28 QNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI---NAINCNSKSAAVPSVLQPSQ 84 + ++ +E +VF K ++DEY+ +A++I I+ A+V + Q Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 -FHSPPCTTAALLGNTPAG 102 P AA +G P G Sbjct: 61 SLTGGPTPGAAGIGMPPRG 79 >ref|NP_608528.1| CG4184-PA [Drosophila melanogaster] gb|AAD38595.1|AF145620_1 BcDNA.GH03922 [Drosophila melanogaster] gb|AAF51490.1| CG4184-PA [Drosophila melanogaster] Length = 749 Score = 111 bits (278), Expect = 2e-24 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Query: 4 EDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKV 63 EDW S KFR++VI ++ L N Q+ +A +E ++F K +KDEY+ +AK+ Sbjct: 3 EDWQSQKFRQNVISKIHDLLPPNAQDQT-----KNAGVMENHIFRKSRTKDEYLGLVAKL 57 Query: 64 INAINCNSKSAAVPSVLQPSQFHSPPCTTAALLG 97 ++ S Q Q P A + G Sbjct: 58 --FMHYKDMSRKSQQQQQQQQQQGGPPPNAEMGG 89 >gb|AAH46263.1| Similar to PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein [Xenopus laevis] Length = 846 Score = 97.4 bits (241), Expect = 3e-20 Identities = 11/79 (13%), Positives = 32/79 (39%), Gaps = 8/79 (10%) Query: 13 EHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI---NAINC 69 + ++ +++ + ++++E +VF K +++EY+ +A++I I Sbjct: 1 QKLVSQIDE-----AMRKAGVAHTKSSKEMESHVFLKAKTREEYLSLVARLIIHFRDIFN 55 Query: 70 NSKSAAVPSVLQPSQFHSP 88 A + Q + Sbjct: 56 KKNQTAASDPMNALQNLTG 74 >gb|AAC12944.1| TPA inducible protein [Homo sapiens] Length = 579 Score = 90.5 bits (223), Expect = 4e-18 Identities = 19/79 (24%), Positives = 34/79 (42%), Gaps = 4/79 (5%) Query: 28 QNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI---NAINCNSKSAAVPSVLQPSQ 84 + ++ +E +VF K ++DEY+ +A++I I+ A+V + Q Sbjct: 1 MRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQ 60 Query: 85 -FHSPPCTTAALLGNTPAG 102 P AA +G P G Sbjct: 61 SLTGGPAAGAAGIGMPPRG 79 >gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] Length = 754 Score = 88.5 bits (218), Expect = 1e-17 Identities = 12/64 (18%), Positives = 26/64 (39%), Gaps = 3/64 (4%) Query: 28 QNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVI---NAINCNSKSAAVPSVLQPSQ 84 + ++ +E +VF K +++EY+ +A++I I AA + Q Sbjct: 1 MRKAGVAHTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDPMNALQ 60 Query: 85 FHSP 88 + Sbjct: 61 NLTG 64 >ref|ZP_00107060.1| hypothetical protein [Nostoc punctiforme] Length = 591 Score = 36.5 bits (83), Expect = 0.071 Identities = 18/63 (28%), Positives = 26/63 (40%), Gaps = 6/63 (9%) Query: 61 AKVINAINCN------SKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPD 114 A+V+N + + +A+V LQP + S P A+ L G P P P Sbjct: 264 AQVLNRMLNHIPSDRYQSAASVSQALQPLEQVSLPPLNASNLQTMAVGRRPDSIPPASPK 323 Query: 115 PQP 117 QP Sbjct: 324 KQP 326 >ref|NP_509376.1| KIX domain containing protein family member [Caenorhabditis elegans] pir||T16139 hypothetical protein F22F1.3 - Caenorhabditis elegans gb|AAA83283.1| Hypothetical protein F22F1.3 [Caenorhabditis elegans] Length = 295 Score = 36.5 bits (83), Expect = 0.075 Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 12 REHVIQRL-EPELARNRQNAPNLPVPGDARQ----VEEYVFAKCMSKDEYMRTIAKVINA 66 R+++I ++ + R +A N + ++ +E+ F K +KDEY +A++I + Sbjct: 71 RQYMITKIVREAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELARIILS 130 Query: 67 INCNSKSA 74 + + +S Sbjct: 131 MQKHLQSR 138 >ref|ZP_00041563.1| hypothetical protein [Xylella fastidiosa Ann-1] Length = 501 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 14/100 (14%) Query: 18 RLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVP 77 RL+ + R RQ + P + + E F +++++Y + K + VP Sbjct: 198 RLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQVVP 257 Query: 78 SVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S +QFH+ P YRA +P P Sbjct: 258 SQRLCTQFHARP--------------VDVYRALRTLNPSP 283 >gb|EAA30856.1| predicted protein [Neurospora crassa] Length = 400 Score = 35.8 bits (81), Expect = 0.12 Identities = 16/49 (32%), Positives = 20/49 (40%) Query: 74 AAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQA 122 A P+V P P A PA TPG +P P P +AQ+ Sbjct: 16 AKSPTVQSPKGQAKSPTPGPASPTPGPASTTPGPASPTPGPVSPPAAQS 64 >ref|ZP_00038412.1| hypothetical protein [Xylella fastidiosa Dixon] Length = 501 Score = 35.4 bits (80), Expect = 0.15 Identities = 17/72 (23%), Positives = 31/72 (42%) Query: 18 RLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVP 77 RL+ + R RQ + P + + E F +++++Y + K + VP Sbjct: 198 RLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQVVP 257 Query: 78 SVLQPSQFHSPP 89 S +QFH+ P Sbjct: 258 SQRLCTQFHARP 269 >ref|NP_778415.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] gb|AAO28064.1| anthranilate synthase component I [Xylella fastidiosa Temecula1] Length = 491 Score = 35.4 bits (80), Expect = 0.15 Identities = 17/72 (23%), Positives = 31/72 (42%) Query: 18 RLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVP 77 RL+ + R RQ + P + + E F +++++Y + K + VP Sbjct: 188 RLDALIHRLRQGGMDYPHSHISEVINEEDFHSSLTREQYHAVVRKAQEYVRSGDIFQVVP 247 Query: 78 SVLQPSQFHSPP 89 S +QFH+ P Sbjct: 248 SQRLCTQFHARP 259 >pir||D86302 hypothetical protein F17F16.9 - Arabidopsis thaliana gb|AAG09088.1|AC026237_9 Hypothetical protein [Arabidopsis thaliana] Length = 238 Score = 35.0 bits (79), Expect = 0.20 Identities = 12/46 (26%), Positives = 23/46 (49%) Query: 12 REHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYM 57 R+ + +LE +A A+++EE +F M+K+EY+ Sbjct: 13 RDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYL 58 >ref|NP_297503.1| anthranilate synthase component I [Xylella fastidiosa 9a5c] pir||A82835 anthranilate synthase component I XF0210 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83023.1|AE003874_7 anthranilate synthase component I [Xylella fastidiosa 9a5c] Length = 487 Score = 35.0 bits (79), Expect = 0.21 Identities = 16/74 (21%), Positives = 33/74 (43%) Query: 16 IQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAA 75 ++RL+ + R RQ + P + + E F +++++Y + + + Sbjct: 182 VERLDVLIYRLRQGGVDYPHSHISEVINEEDFHSSLTREQYHAVVRQAQEYVRSGDIFQV 241 Query: 76 VPSVLQPSQFHSPP 89 VPS +QFH+ P Sbjct: 242 VPSQRLCTQFHARP 255 >emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa] gb|EAA27381.1| hypothetical protein [Neurospora crassa] Length = 2177 Score = 35.0 bits (79), Expect = 0.21 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 74 AAVPSVLQPSQFHSPPCTTAALLGNTPAGG-TPGYRAPVPPDPQPTSAQA 122 A+ PS P Q S P TT+ GNT GG TPG A P P P A + Sbjct: 275 ASSPSPQLP-QSGSEPTTTSTESGNTIRGGVTPGLTARTPSYPFPRMASS 323 >ref|NP_564004.1| expressed protein [Arabidopsis thaliana] gb|AAM67290.1| unknown [Arabidopsis thaliana] Length = 128 Score = 34.6 bits (78), Expect = 0.24 Identities = 12/46 (26%), Positives = 23/46 (49%) Query: 12 REHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYM 57 R+ + +LE +A A+++EE +F M+K+EY+ Sbjct: 13 RDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYL 58 >ref|NP_642678.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37214.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 187 Score = 34.6 bits (78), Expect = 0.30 Identities = 13/38 (34%), Positives = 14/38 (36%) Query: 78 SVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDP 115 P Q P T A + G TP G P PDP Sbjct: 149 QPAGPRQNRRAPTTGAVVGGMTPNGRIPAPLMDHDPDP 186 >dbj|BAC65994.1| B1123E10.21 [Oryza sativa (japonica cultivar-group)] Length = 1690 Score = 33.8 bits (76), Expect = 0.45 Identities = 17/52 (32%), Positives = 20/52 (37%), Gaps = 9/52 (17%) Query: 64 INAINCNSKSAAVPSVLQPSQFHSPP---CTTAALLGNTPAGGTPGYRAPVP 112 + + SAA P P SPP A +G P G PG AP P Sbjct: 1384 LREMPNKKLSAAAP-PFNP----SPPAILSPLAVSVGLPPPGAIPGV-APWP 1429 >gb|AAH46717.1| Similar to zinc finger protein 162 [Xenopus laevis] Length = 571 Score = 33.8 bits (76), Expect = 0.45 Identities = 21/73 (28%), Positives = 28/73 (37%), Gaps = 15/73 (20%) Query: 49 KCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQ------FHSPPCTTAALLGNTPAG 102 K EY+ +A++ A VPS + P+ P AAL GNTP Sbjct: 300 KARMDKEYLSLMAEL--------GEAPVPSPMGPASVPSHNPVQGGPRP-AALTGNTPPM 350 Query: 103 GTPGYRAPVPPDP 115 P + P P P Sbjct: 351 NRPPWMTPDRPFP 363 >dbj|BAA32465.3| MEGF4 [Homo sapiens] Length = 1618 Score = 33.8 bits (76), Expect = 0.45 Identities = 16/36 (44%), Positives = 18/36 (49%), Gaps = 2/36 (5%) Query: 88 PPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQAR 123 PP A L P G +R+ VPP PQ AQAR Sbjct: 15 PPPPKAPSLR--PRTGAVAWRSKVPPSPQGRRAQAR 48 >emb|CAC67410.1| lupanine hydroxylase [Pseudomonas sp. DH2001] Length = 695 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 74 AAVPSVLQPSQFHSPPCTTAALLG---NTPAGGTPGYRAPVPPDPQPTSAQARN 124 +P ++ Q P A LG P TP + P P P+PTSA A + Sbjct: 551 RGIPRLMNNLQSQGPARLLAFRLGGKTELPITSTPDF--PKPQYPKPTSAMAES 602 >ref|XP_318888.1| ENSANGP00000023042 [Anopheles gambiae] gb|EAA43518.1| ENSANGP00000023042 [Anopheles gambiae str. PEST] Length = 71 Score = 32.7 bits (73), Expect = 1.0 Identities = 23/68 (33%), Positives = 27/68 (38%), Gaps = 4/68 (5%) Query: 46 VFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTP 105 VF C+ Y RT +IN IN S + +P Q HS L N P T Sbjct: 5 VFLVCVPTANYERT---LINGINYASNNEQLPPPESTPQQHS-TTPARNLNINLPENVTQ 60 Query: 106 GYRAPVPP 113 G R P P Sbjct: 61 GPRGPRTP 68 >sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associated protein (PUMA1) pir||T30934 myosin-like protein - Parascaris univalens gb|AAC38995.1| PUMA1 [Parascaris univalens] Length = 1955 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/56 (30%), Positives = 27/56 (47%) Query: 13 EHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAIN 68 E+ Q+LE E+ R G+ R VEE K + +DEY I+++ +N Sbjct: 470 ENARQQLEEEVRRLTLQVDQSKADGERRVVEEGEIQKRIVEDEYRSMISELTRRMN 525 >sp|P38370|OAR_MYXXA OAR PROTEIN PRECURSOR pir||A40609 OmpA-related protein Oar - Myxococcus xanthus gb|AAB27614.1| Oar [Myxococcus xanthus] Length = 1061 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 19/92 (20%) Query: 34 PVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA 93 +PG AR+ +A + +YM + +IN + S + + P +T Sbjct: 343 AIPGSARKY----YADSRTI-QYMGKLTYLINQDHNVSFA-----------LNGTPTSTG 386 Query: 94 ALLG---NTPAGGTPGYRAPVPPDPQPTSAQA 122 L N +GG PG A P D T +A Sbjct: 387 GLGKLSVNPQSGGLPGVLATRPGDFGLTETKA 418 >gb|AAH22954.1| Syn1 protein [Mus musculus] Length = 678 Score = 32.3 bits (72), Expect = 1.3 Identities = 14/51 (27%), Positives = 19/51 (36%), Gaps = 1/51 (1%) Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQAR 123 A P + + S P A+ G P G P + P P P P A+ Sbjct: 557 QAGAPQATRQASI-SGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAK 606 >ref|NP_650035.1| CG14696-PA [Drosophila melanogaster] gb|AAF54577.1| CG14696-PA [Drosophila melanogaster] Length = 457 Score = 32.3 bits (72), Expect = 1.3 Identities = 14/42 (33%), Positives = 21/42 (49%) Query: 77 PSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPT 118 P+ + P+ SPP TT + + P G +PPD +PT Sbjct: 401 PNPVSPAAQKSPPYTTNTPVASPPGGNFEVLGFSIPPDYKPT 442 >sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 gb|AAB37245.1| rco-1 gene product Length = 604 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 79 VLQPSQFHSPPCTTAALLGNTPAGG--TPGYRAPVPPDPQPTSA 120 P SP +G PAGG TP P+P + P + Sbjct: 181 PQPPQSTASPGPAGKRGIGRPPAGGPATPQINTPIPYNGGPAQS 224 >gb|EAA33685.1| hypothetical protein [Neurospora crassa] Length = 604 Score = 32.3 bits (72), Expect = 1.5 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 79 VLQPSQFHSPPCTTAALLGNTPAGG--TPGYRAPVPPDPQPTSA 120 P SP +G PAGG TP P+P + P + Sbjct: 181 PQPPQSTASPGPAGKRGIGRPPAGGPATPQINTPIPYNGGPAQS 224 >ref|NP_635853.1| anthranilate synthase component I [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM39777.1| anthranilate synthase component I [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 491 Score = 31.9 bits (71), Expect = 1.7 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 14/100 (14%) Query: 18 RLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVP 77 RL+ R RQ P + ++E F +++EY + K + VP Sbjct: 188 RLDELAHRLRQGGAGYPQAQISDAIDESDFHSSFTREEYHAVVRKAQEYVRAGDIFQVVP 247 Query: 78 SVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S F + P YRA +P P Sbjct: 248 SQRLRVPFRARP--------------VDVYRALRALNPSP 273 >ref|NP_572465.1| CG2147-PA [Drosophila melanogaster] gb|AAF46352.1| CG2147-PA [Drosophila melanogaster] gb|AAL39867.1| LP02728p [Drosophila melanogaster] Length = 165 Score = 31.9 bits (71), Expect = 1.7 Identities = 14/49 (28%), Positives = 20/49 (40%) Query: 76 VPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQARN 124 + + P Q S P P+G PG P DP P SA +++ Sbjct: 9 ATNSINPQQVASVPPPPPTGQIIAPSGAFPGSLTPGWNDPPPISADSQS 57 >gb|AAF08805.1|AF192747_1 synapsin Ia [Lampetra fluviatilis] Length = 687 Score = 31.9 bits (71), Expect = 1.9 Identities = 12/38 (31%), Positives = 17/38 (44%) Query: 75 AVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVP 112 P ++Q Q P ++ G TPAGG + P P Sbjct: 529 GAPPLVQQQQQRMGPPGQSSQGGPTPAGGGQPNQPPRP 566 >ref|NP_773328.1| bll6688 [Bradyrhizobium japonicum] dbj|BAC51953.1| bll6688 [Bradyrhizobium japonicum USDA 110] Length = 401 Score = 31.5 bits (70), Expect = 2.0 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 73 SAAVPSVLQPSQFHSPP-CTTAALLGNTPAG--GTPGYRAPVPPDPQPTSAQAR 123 A L+P + P T A G P G G P A +PP+ QP +A A+ Sbjct: 152 QAPGSDGLRPPEAVGGPAATGAVQAGQPPVGADGRPMAIASLPPEEQPDAAPAQ 205 >gb|AAH51828.1| Similar to protein phosphatase 1, regulatory (inhibitor) subunit 1C [Homo sapiens] Length = 812 Score = 31.5 bits (70), Expect = 2.0 Identities = 13/45 (28%), Positives = 16/45 (34%) Query: 72 KSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116 + + Q S A G+ PA G P Y PP PQ Sbjct: 730 MTQGSQGLPQQSYQQPIMLPNQAGQGSLPATGMPVYCNVTPPTPQ 774 >ref|NP_640831.1| anthranilate synthase component I [Xanthomonas axonopodis pv. citri str. 306] gb|AAM35367.1| anthranilate synthase component I [Xanthomonas axonopodis pv. citri str. 306] Length = 491 Score = 31.5 bits (70), Expect = 2.0 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 14/100 (14%) Query: 18 RLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVP 77 RL+ R RQ P + ++E F +++EY + K + VP Sbjct: 188 RLDELAHRLRQGGAGYPQAQISDAIDEADFHSSFTREEYHAVVRKAQEYVRAGDIFQVVP 247 Query: 78 SVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S F + P YRA +P P Sbjct: 248 SQRLRVPFRARP--------------VDVYRALRALNPSP 273 >ref|NP_497144.1| TAZ zinc finger family member [Caenorhabditis elegans] pir||T33579 hypothetical protein C29F9.6 - Caenorhabditis elegans gb|AAC68748.1| Hypothetical protein C29F9.6 [Caenorhabditis elegans] Length = 228 Score = 31.5 bits (70), Expect = 2.0 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 12 REHVIQRLEPELARNRQN-APNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60 RE VI+R+ + + Q P + DAR E +F S+DEY R + Sbjct: 129 REAVIERISKHIMLHPQRFEPIWKIKEDARAAELQIFEAAGSRDEYYRMV 178 >gb|AAF08806.1|AF192748_1 synapsin Ib [Lampetra fluviatilis] Length = 642 Score = 31.5 bits (70), Expect = 2.1 Identities = 12/38 (31%), Positives = 17/38 (44%) Query: 75 AVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVP 112 P ++Q Q P ++ G TPAGG + P P Sbjct: 529 GAPPLVQQQQQRMGPPGQSSQGGPTPAGGGQPNQPPRP 566 >ref|NP_004681.1| LATS homolog 1 [Homo sapiens] gb|AAD16882.1| large tumor suppressor 1 [Homo sapiens] gb|AAD50272.1|AF164041_1 WARTS protein kinase [Homo sapiens] Length = 1130 Score = 31.5 bits (70), Expect = 2.5 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 77 PSVLQPSQFHSPPCTTAALLG-NTPAGGTPGYRAPVPPDPQ 116 P +Q Q P TA+ + P P Y+ P PP P+ Sbjct: 521 PQPIQTVQPSPFPEGTASNVTVMPPVAEAPNYQGPPPPYPK 561 >pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans) emb|CAA21993.1| possible regulatory protein [Candida albicans] Length = 1145 Score = 31.5 bits (70), Expect = 2.5 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 12 REHVIQRLEPELARNRQNAPNLPV---PGDARQVEEYVFAKCMSKDEYMRTIAKVINAIN 68 R+ V+Q + L + PN V A+ E+ V+ + SK++Y+R I ++ + Sbjct: 32 RQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRAIKMKVHQLR 91 Query: 69 CNSKSAAVPS--VLQP 82 + A + P Sbjct: 92 VQKQQIAANQGGQINP 107 >ref|NP_830846.1| Collagen adhesion protein [Bacillus cereus ATCC 14579] gb|AAP08047.1| Collagen adhesion protein [Bacillus cereus ATCC 14579] Length = 2444 Score = 31.1 bits (69), Expect = 2.9 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 4/42 (9%) Query: 75 AVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116 P +P P N GTP P PDP+ Sbjct: 2360 GTPDPEKP----GTPDPEKPGTPNPEKPGTPDLEKPGTPDPE 2397 >ref|NP_150289.1| protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Women's Genetics 1012 expressed [Mus musculus] gb|AAK48713.1|AF324451_1 TARPP [Mus musculus] Length = 807 Score = 31.1 bits (69), Expect = 2.9 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 733 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 769 >pir||G72580 hypothetical protein APE1926 - Aeropyrum pernix (strain K1) dbj|BAA80932.1| 155aa long hypothetical protein [Aeropyrum pernix] Length = 155 Score = 31.1 bits (69), Expect = 3.1 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 75 AVPSVLQPSQFHSPPCTTAALLGNTPAGGTP--GYRAPVPPDPQPTSAQ 121 + P Q F P G++PA G+P G R P P P +Q Sbjct: 22 SSPPPTQMLPFGGFPPPNGGAAGSSPAAGSPIRGSRVRRLPAPTPGLSQ 70 >dbj|BAC27918.1| unnamed protein product [Mus musculus] Length = 771 Score = 31.1 bits (69), Expect = 3.2 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 697 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 733 >ref|NP_004371.1| CREB binding protein [Homo sapiens] sp|Q92793|CBP_HUMAN CREB-binding protein gb|AAC51770.1| CREB-binding protein Length = 2442 Score = 31.1 bits (69), Expect = 3.2 Identities = 26/105 (24%), Positives = 39/105 (36%), Gaps = 12/105 (11%) Query: 14 HVIQRLEPELARNRQNAPNLPVPGD-ARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSK 72 ++Q + P + A++VE ++ S+DEY +A+ I I Sbjct: 607 KLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQ-KEL 665 Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S L +LGN PA PG + PV P QP Sbjct: 666 EEKRRSRLHKQ----------GILGNQPALPAPGAQPPVIPQAQP 700 >gb|AAC51331.2| CREB-binding protein [Homo sapiens] Length = 2442 Score = 31.1 bits (69), Expect = 3.2 Identities = 26/105 (24%), Positives = 39/105 (36%), Gaps = 12/105 (11%) Query: 14 HVIQRLEPELARNRQNAPNLPVPGD-ARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSK 72 ++Q + P + A++VE ++ S+DEY +A+ I I Sbjct: 607 KLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQ-KEL 665 Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S L +LGN PA PG + PV P QP Sbjct: 666 EEKRRSRLHKQ----------GILGNQPALPAPGAQPPVIPQAQP 700 >pir||T42644 hypothetical protein DKFZp566N1047.1 - human (fragment) emb|CAB61414.1| hypothetical protein [Homo sapiens] Length = 651 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/45 (28%), Positives = 16/45 (34%) Query: 72 KSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQ 116 + + Q S A G+ PA G P Y PP PQ Sbjct: 569 MTQGSQGLPQQSYQQPIMLPNQAGQGSLPATGMPVYCNVTPPTPQ 613 >gb|AAH53001.1| Ppp1r1c protein [Mus musculus] Length = 809 Score = 30.8 bits (68), Expect = 3.8 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 735 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 771 >ref|NP_035481.1| sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C; Sema Y; m-Sema Y [Mus musculus] sp|Q9WTM3|SM6C_MOUSE Semaphorin 6C precursor (Semaphorin Y) (Sema Y) dbj|BAA76294.1| semaphorin Y [Mus musculus] Length = 931 Score = 30.8 bits (68), Expect = 3.9 Identities = 15/71 (21%), Positives = 27/71 (37%), Gaps = 6/71 (8%) Query: 59 TIAKVINAINCNSKSAAVPSVLQPSQFHSPPC---TTAALLGN---TPAGGTPGYRAPVP 112 T+ +++ ++ L + F S P A+L + P G P R VP Sbjct: 768 TLEELLRYLHGPQPPRKGSEPLASAPFTSRPPASEPGASLFVDSSPMPRDGVPPLRLDVP 827 Query: 113 PDPQPTSAQAR 123 P+ + + R Sbjct: 828 PEGKRAAPSGR 838 >dbj|BAC27859.1| unnamed protein product [Mus musculus] Length = 789 Score = 30.8 bits (68), Expect = 4.4 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + A G+ PA G P Y PP+PQ Sbjct: 715 PQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQ 751 >gb|AAK52051.1|AF363973_1 semaphorin 6C [Mus musculus] Length = 963 Score = 30.4 bits (67), Expect = 4.4 Identities = 15/71 (21%), Positives = 27/71 (37%), Gaps = 6/71 (8%) Query: 59 TIAKVINAINCNSKSAAVPSVLQPSQFHSPPC---TTAALLGN---TPAGGTPGYRAPVP 112 T+ +++ ++ L + F S P A+L + P G P R VP Sbjct: 800 TLEELLRYLHGPQPPRKGSEPLASAPFTSRPPASEPGASLFVDSSPMPRDGVPPLRLDVP 859 Query: 113 PDPQPTSAQAR 123 P+ + + R Sbjct: 860 PEGKRAAPSGR 870 >gb|AAL99670.1|AF363972_1 semaphorin 6C short isoform 2 [Mus musculus] Length = 923 Score = 30.4 bits (67), Expect = 4.5 Identities = 15/71 (21%), Positives = 27/71 (37%), Gaps = 6/71 (8%) Query: 59 TIAKVINAINCNSKSAAVPSVLQPSQFHSPPC---TTAALLGN---TPAGGTPGYRAPVP 112 T+ +++ ++ L + F S P A+L + P G P R VP Sbjct: 760 TLEELLRYLHGPQPPRKGSEPLASAPFTSRPPASEPGASLFVDSSPMPRDGVPPLRLDVP 819 Query: 113 PDPQPTSAQAR 123 P+ + + R Sbjct: 820 PEGKRAAPSGR 830 >gb|EAA32551.1| hypothetical protein [Neurospora crassa] Length = 1955 Score = 30.4 bits (67), Expect = 5.6 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 7/109 (6%) Query: 17 QRLEPELARNRQNAPNLPVPGDARQVEEYVFAKC-MSKDEYMRTIAKVINAINCNSKSAA 75 Q++E + +P P + E + ++ Y + A+ + ++ Sbjct: 181 QKIERTTPVLVKQESPVPSPKVEHRAERHTPTNTPKNRQAYSQNRARFEIVLPTRAELER 240 Query: 76 VPSVLQPSQFHS-----PPCTTAALLGNTPAGGTPGYRAPVPPDP-QPT 118 + LQ + PP +T + P P AP+ P P QPT Sbjct: 241 AQAALQATSSQGIASSEPPVSTRPSISQPPPQFAPIQPAPLQPAPQQPT 289 >gb|AAK95420.1| BPLF1 [cercopithicine herpesvirus 15] Length = 3105 Score = 30.0 bits (66), Expect = 5.9 Identities = 12/46 (26%), Positives = 14/46 (30%) Query: 77 PSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQA 122 P Q + P A P TP + P P P QA Sbjct: 508 PQPPQAATPTPQPPQAATPTPQPPQAATPTPQPPQAATPTPQPPQA 553 Score = 30.0 bits (66), Expect = 5.9 Identities = 12/46 (26%), Positives = 14/46 (30%) Query: 77 PSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQA 122 P Q + P A P TP + P P P QA Sbjct: 518 PQPPQAATPTPQPPQAATPTPQPPQAATPTPQPPQAATPTPQPPQA 563 >ref|NP_609969.1| CG10034-PA [Drosophila melanogaster] gb|AAF53804.2| CG10034-PA [Drosophila melanogaster] Length = 509 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Query: 78 SVLQPSQFHSPPCTTAALLGNTPAG-GTPGYRAPVPPDPQP 117 L P P A+L NT +G G PG PP+ P Sbjct: 114 QPLSPPPEQYGPLPGQAILVNTSSGAGVPGGVPSTPPETPP 154 >emb|CAC18237.2| probable Tim22, subunit of the Tim22-complex [Neurospora crassa] gb|EAA31951.1| hypothetical protein [Neurospora crassa] Length = 194 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 85 FHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQARN 124 +HSP N A G PGY+ PV P Q ++ Sbjct: 69 YHSPTTPGTGPGANPAAAGIPGYK-PVDLSSMPLKEQLKH 107 >gb|AAL84238.1|AF455111_1 ataxin-7 [Mus musculus] Length = 867 Score = 29.6 bits (65), Expect = 7.7 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 74 AAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDP--QPTS 119 A+ P PS P C A G+TP PG +P PP P +P S Sbjct: 421 ASKPKPQTPSLPRPPGCP-AQQGGSTPIDPPPGQESPHPPLPATEPAS 467 >emb|CAB97351.1| MADS-box protein 3 [Hordeum vulgare subsp. vulgare] Length = 265 Score = 29.6 bits (65), Expect = 8.2 Identities = 15/38 (39%), Positives = 17/38 (44%) Query: 87 SPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQARN 124 SP TA P G R P+PQP+ AQA N Sbjct: 214 SPTPPTAQDSMAPPNIGPYQSRGGGDPEPQPSPAQANN 251 >ref|NP_631973.2| spinocerebellar ataxia 7 homolog [Mus musculus] dbj|BAC32834.1| unnamed protein product [Mus musculus] Length = 867 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 74 AAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDP--QPTS 119 A+ P PS P C A G+TP PG +P PP P +P S Sbjct: 421 ASKPKPQTPSLPRPPGCP-AQQGGSTPIDPPPGQESPHPPLPATEPAS 467 >ref|XP_236662.1| similar to protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Womens Genetics 1012 expressed [Mus musculus] [Rattus norvegicus] Length = 369 Score = 29.6 bits (65), Expect = 8.9 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 82 PSQFHSPPC--TTAALLGNTPAGGTPGYRAPVPPDPQ 116 P Q + PP + G+ PA G P Y PP PQ Sbjct: 187 PQQTYQPPIMLPSQTGQGSLPATGMPVYCNITPPSPQ 223 >ref|NP_194990.1| expressed protein [Arabidopsis thaliana] sp|Q9M081|S24B_ARATH Putative protein transport protein Sec24-like At4g32640 pir||D85383 hypothetical protein AT4g32640 [imported] - Arabidopsis thaliana emb|CAB79981.1| putative protein [Arabidopsis thaliana] Length = 1069 Score = 29.6 bits (65), Expect = 9.1 Identities = 11/41 (26%), Positives = 16/41 (38%) Query: 77 PSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 P +QP ++ P ++ A G PG P P P Sbjct: 293 PGQMQPPRYGMGPLPNQSMTNIPTAMGQPGATVPGPSRIDP 333 >gb|AAN17675.1| MLL5 [Homo sapiens] Length = 1858 Score = 29.6 bits (65), Expect = 9.5 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 16/99 (16%) Query: 31 PNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAIN-------CNSKSAAVPSVLQPS 83 P A + E V K + + + + ++ + +S+ + P+ Sbjct: 1378 PQWDSTVSASEAENGVHLKTELQQKQLSNNNQALSKNHPPQTHVRNSSEQLSQKLPSVPT 1437 Query: 84 QFHSPPCTTAALLGNTPAGGTP------GYRAPVPPDPQ 116 + H PP N P TP GY +P PP Q Sbjct: 1438 KLHCPPSPHLE---NPPKSSTPHTPVQHGYLSPKPPSQQ 1473 >pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila melanogaster) gb|AAB53050.1| CREB-binding protein homolog [Drosophila melanogaster] Length = 3190 Score = 29.6 bits (65), Expect = 9.6 Identities = 16/74 (21%), Positives = 32/74 (42%), Gaps = 8/74 (10%) Query: 2 SEEDWP---SPKFREHVIQRLEPELARNR-----QNAPNLPVPGDARQVEEYVFAKCMSK 53 +E+DW + R H++ +L + Q+ + A +VE+ ++ S+ Sbjct: 939 NEKDWRESVTADLRNHLVHKLVQAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMYEMAKSR 998 Query: 54 DEYMRTIAKVINAI 67 EY +A+ I I Sbjct: 999 SEYYHLLAEKIYKI 1012 >ref|NP_061152.2| myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) [Homo sapiens] gb|AAM74947.1|AF519459_1 MLL5 [Homo sapiens] Length = 1858 Score = 29.6 bits (65), Expect = 9.6 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 16/99 (16%) Query: 31 PNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAIN-------CNSKSAAVPSVLQPS 83 P A + E V K + + + + ++ + +S+ + P+ Sbjct: 1378 PQWDSTVSASEAENGVHLKTELQQKQLSNNNQALSKNHPPQTHVRNSSEQLSQKLPSVPT 1437 Query: 84 QFHSPPCTTAALLGNTPAGGTP------GYRAPVPPDPQ 116 + H PP N P TP GY +P PP Q Sbjct: 1438 KLHCPPSPHLE---NPPKSSTPHTPVQHGYLSPKPPSQQ 1473 >gb|AAN76325.1| myeloid/lymphoid or mixed-lineage leukemia 5 [Homo sapiens] Length = 1778 Score = 29.6 bits (65), Expect = 9.6 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 16/99 (16%) Query: 31 PNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAIN-------CNSKSAAVPSVLQPS 83 P A + E V K + + + + ++ + +S+ + P+ Sbjct: 1298 PQWDSTVSASEAENGVHLKTELQQKQLSNNNQALSKNHPPQTHVRNSSEQLSQKLPSVPT 1357 Query: 84 QFHSPPCTTAALLGNTPAGGTP------GYRAPVPPDPQ 116 + H PP N P TP GY +P PP Q Sbjct: 1358 KLHCPPSPHLE---NPPKSSTPHTPVQHGYLSPKPPSQQ 1393 >gb|AAC08447.1| CBP [Homo sapiens] Length = 555 Score = 29.6 bits (65), Expect = 9.6 Identities = 26/105 (24%), Positives = 39/105 (36%), Gaps = 12/105 (11%) Query: 14 HVIQRLEPELARNRQNAPNLPVPGD-ARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSK 72 ++Q + P + A++VE ++ S+DEY +A+ I I Sbjct: 341 KLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQ-KEL 399 Query: 73 SAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQP 117 S L +LGN PA PG + PV P QP Sbjct: 400 EEKRRSRLHKQ----------GILGNQPALPAPGAQPPVIPQAQP 434 Database: /local/data/sequences/fasta/nr Posted date: Jun 30, 2003 5:37 PM Number of letters in database: 468,778,868 Number of sequences in database: 1,459,938 Lambda K H 0.300 0.138 0.387 Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 606,505,800 Number of Sequences: 1459938 Number of extensions: 22911359 Number of successful extensions: 147959 Number of sequences better than 10.0: 2102 Number of HSP's better than 10.0 without gapping: 710 Number of HSP's successfully gapped in prelim test: 1448 Number of HSP's that attempted gapping in prelim test: 135735 Number of HSP's gapped (non-prelim): 10263 length of query: 147 length of database: 468,778,868 effective HSP length: 123 effective length of query: 24 effective length of database: 289,206,494 effective search space: 6940955856 effective search space used: 6940955856 T: 11 A: 40 X1: 16 ( 6.9 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.0 bits) S2: 65 (29.6 bits)