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Supplementary material for the publication:
"The family of homologous domains NT-ARC105, NT-GAL11, NT-plantCBP and
KIX for linking transcriptional activators and co-activators"
by Maria Novatchkova and Frank Eisenhaber
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NT-ARC105, NT-GAL11, NT-plantCBP and KIX-domain proteins are summarized in the table below. Follow the links for the
 NCBI sequence retrieval
 full length BLAST
 NT-ARC105/NT-GAL11/NT-plantCBP/KIX domain BLAST (-- domain not present)
Q21955
/Ce ARC105
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NP_608528
/Dm ARC105
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AAH45472
/Dr ARC105
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AAN62354
/CTV.22
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NP_178842
/At2g10440
no EST
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AAH46263
/Xl ARC105
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NP_173031
PSI:
1
2
3
4
5
6
7
8
9
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NP_173029
/At1g15770
-- no EST
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Q924H2/
Mm ARC105
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BAC56002
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CTV.20
CAE03805
viral seq |
Ec NP_586100
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Hs ARC105
PSI:
1
2
3
4
5
6
7
8
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NP_509376
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CBP_HUMAN
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NP_173030
PSI:
1
2
3
4
5
6
7
8
9
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Ca Gal11
PSI:
1
2
3
4
5
6
7
8
9
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NP_595390
/Sp Gal11
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NP_499201
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NP_493339
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P300_HUMAN
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CBP_MOUSE
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Sc Gal11
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Kl Gal11
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NP_497145
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NP_497144
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CBP1_CAEE
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AAB31182
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Dm nejire
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Aplysia_CBP
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NP_187904
/At3g12980
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NP_565197
/At1g79000
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NP_173115
/At1g16710
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NP_564004
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Analysis
- Sequence searches defining the NT-ARC105 domain,
 rounds 1 2 3 4 5 6 7 8
- Domain and Fold recognition methods support a NT-ARC105/KIX similarity Link to the data ->
CDDsearch, PFAM, Superfamily, Sam-T02, FFAS03, Fischers Fold recognition and FUGUE2 were used to analyse the NT-ARC105 domain in ARC105 proteins in C elegans, D melanogaster, D rerio, X laevis, M musculus, H sapiens.
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Analysis
- Sequence searches defining the NT-GAL11 domain, rounds 1 2 3 4 5 6 7 8 9
- Domain and Fold recognition methods support a NT-GAL11/KIX similarity Link to the data ->
CDDsearch, PFAM, Superfamily, Sam-T02, FFAS03, Fischers Fold recognition and FUGUE2 were used to analyse the NT-GAL11 domain in fungal and plantal GAL11 proteins.
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Analysis
- Sequence searches defining the NT-plantCBP domain, rounds 1 2
- Domain and Fold recognition methods support a NT-plantCBP/KIX similarity Link to the data ->
CDDsearch, PFAM, Superfamily, Sam-T02, FFAS03, Fischers Fold recognition and FUGUE2 were used to analyse the NT-plantCBP domain in plant CBP proteins.
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PSSM of plantal NP_173030 likely orthologs. Applying that PSSM to psi-blast we obtain ARC105/PCAP proteins as subsignificant hits (Xl-0.045, Ce-1.6...).
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