BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Fun_Sp_NP_594698.1 (340 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 614 e-177 SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 30 0.64 SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.4 SPBC28E12.03 |rga4||GTPase activating protein|Schizosaccharomyce... 27 3.7 SPBC1921.03c |mex67||Tap homolog|Schizosaccharomyces pombe|chr 2... 27 4.7 SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 5.0 SPAC31G5.10 |eta2||Myb family|Schizosaccharomyces pombe|chr 1|||... 26 6.2 SPAC22H10.03c |kap114||karyopherin|Schizosaccharomyces pombe|chr... 26 8.6 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 614 bits (1584), Expect = e-177, Method: Composition-based stats. Identities = 326/340 (95%), Positives = 326/340 (95%) Query: 1 MNEHGCFSGGSYSELSNDCETVNFRGIAYKCFFTKDQVKGTRLVRLTNYLMLLVNFWQIS 60 MNEHGCFSGGSYSELSNDCETVNFRGIAYKCFFTKDQVKGTRLVRLTNYLMLLVNFWQIS Sbjct: 1 MNEHGCFSGGSYSELSNDCETVNFRGIAYKCFFTKDQVKGTRLVRLTNYLMLLVNFWQIS 60 Query: 61 HLTGGLFNFLVSQALNEHGLDLLWIIMVVAQTLSALVSFPEKLLNILRNMKTILINTEET 120 HLTGGLFNFLVSQALNEHGLDLLWIIMVVAQTLSALVSFPEKLLNILRNMKTILINTEET Sbjct: 61 HLTGGLFNFLVSQALNEHGLDLLWIIMVVAQTLSALVSFPEKLLNILRNMKTILINTEET 120 Query: 121 VRNRFEESQNKKLVALLDKNSTTLDISSGILLNFTVVLKQLKHALGLHTSVDNSQEFILQ 180 VRNRFEESQNKKLVALLDKNSTTLDISSGILLNFTVVLKQLKHALGLHTSVDNSQEFILQ Sbjct: 121 VRNRFEESQNKKLVALLDKNSTTLDISSGILLNFTVVLKQLKHALGLHTSVDNSQEFILQ 180 Query: 181 FLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFKPRDFHAQTIQSETMFIPPC 240 FLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFKPRDFHAQTIQSETMFIPPC Sbjct: 181 FLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFKPRDFHAQTIQSETMFIPPC 240 Query: 241 WDTISKIQSVNHEFNIALFKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKISDGDIPY 300 WDTISKIQSVNHEFNIALFKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKISDGDIPY Sbjct: 241 WDTISKIQSVNHEFNIALFKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKISDGDIPY 300 Query: 301 KSHQVFLQELQNKYSEIKTYXXXXXXXXXXXXXXWKDLIQ 340 KSHQVFLQELQNKYSEIKTY WKDLIQ Sbjct: 301 KSHQVFLQELQNKYSEIKTYSSNKLNKSSIKSSLWKDLIQ 340 >SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1086 Score = 29.6 bits (65), Expect = 0.64, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 21/30 (70%) Query: 45 RLTNYLMLLVNFWQISHLTGGLFNFLVSQA 74 RL + LM VN+ +++ +TG FNFL+++ Sbjct: 505 RLMDKLMCFVNYTEMARVTGVPFNFLLARG 534 >SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 536 Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 22/38 (57%) Query: 282 SISMLNCHSSKISDGDIPYKSHQVFLQELQNKYSEIKT 319 + S+ N + I DG +P+ HQV + Q K +++++ Sbjct: 84 TYSLSNAYREYIFDGGLPFSKHQVRVNRYQQKINDLRS 121 >SPBC28E12.03 |rga4||GTPase activating protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 933 Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 91 QTLSALVSFPEKLLNILRNMKTILINTEETVRNRFEESQNKKLVALLDKNSTTLDISSGI 150 Q L+ P +++ + +++ ++ E R SQ KK+VALL T LD S I Sbjct: 752 QNRLTLLRVPTLIVSCINFIESYGMDFEGLYRKSGATSQMKKIVALLRNEDTVLDPSEDI 811 Query: 151 LLNFTVVLKQ 160 T V KQ Sbjct: 812 SA-VTSVFKQ 820 >SPBC1921.03c |mex67||Tap homolog|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 596 Score = 26.6 bits (57), Expect = 4.7, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 121 VRNRFEESQNKKLVALLDKNSTTL-DISSGIL-LNFTVVLKQLKHALG 166 V +FEE QNK+L+ D+ L S+GIL +N +V++ +LG Sbjct: 460 VHGQFEEPQNKRLLRSFDRTLLILPGGSTGILIINDLLVIRSFAGSLG 507 >SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF3c|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 918 Score = 26.6 bits (57), Expect = 5.0, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 31/54 (57%) Query: 104 LNILRNMKTILINTEETVRNRFEESQNKKLVALLDKNSTTLDISSGILLNFTVV 157 +++LR + E ++NRF ++++ L++ L + DI++ IL N T+V Sbjct: 569 VSLLRTRAMLCHIYHEALQNRFYKARDMLLMSHLQDSVHAADIATQILHNRTMV 622 >SPAC31G5.10 |eta2||Myb family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 569 Score = 26.2 bits (56), Expect = 6.2, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 22/37 (59%) Query: 106 ILRNMKTILINTEETVRNRFEESQNKKLVALLDKNST 142 I+R +K I + RN +EES+ KKL L+++ T Sbjct: 311 IIRYLKEIYKPLDPKDRNAWEESELKKLYTLVEQEGT 347 >SPAC22H10.03c |kap114||karyopherin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 986 Score = 25.8 bits (55), Expect = 8.6, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 65 GLFNFLVSQALNEHGLDLLWIIMVV 89 G+ +FL S LNE GL ++M V Sbjct: 792 GMMHFLTSSLLNEQGLTAFEVLMTV 816 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Fun_So (316 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 109 5e-25 SPAC1B3.10c |||SEL1 repeat protein|Schizosaccharomyces pombe|chr... 29 0.71 SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 28 2.2 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 8.2 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 109 bits (272), Expect = 5e-25, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 146/322 (45%), Gaps = 22/322 (6%) Query: 1 SGEKQSPLFTSSPIVDCNEISYECFTLYSDIGGI-YSKQIHYLLTQAERSQIIHVWQSSC 59 SG S L V+ I+Y+CF + G + +YL+ +++ WQ S Sbjct: 8 SGGSYSELSNDCETVNFRGIAYKCFFTKDQVKGTRLVRLTNYLML------LVNFWQISH 61 Query: 60 ITDQLLRFFVHQSLRLHGLDALWVIYVNYVFSENPKGFAKDLLEVLR----VCQNSTNEF 115 +T L F V Q+L HGLD LW+I V F + LL +LR + N+ Sbjct: 62 LTGGLFNFLVSQALNEHGLDLLWIIMVVAQTLSALVSFPEKLLNILRNMKTILINTEETV 121 Query: 116 HEEFFVTRDKQKTIMNEYHNFFSTVGSDEFSPFFNFTIILPQIDDENKTFSMNDDMKDFI 175 F +++K+ + + ++ + S NFT++L Q+ + D+ ++FI Sbjct: 122 RNRFEESQNKKLVALLDKNSTTLDISS---GILLNFTVVLKQLKHALGLHTSVDNSQEFI 178 Query: 176 QQFIRXXXXXXXXXXXXXXXTNPCSWDNFKSLLNLYLLNDNPISLQENHHTITSNTIDND 235 QF+R +P SW+N L+ N + + + TI ++ Sbjct: 179 LQFLRTTLLSVPTSSIVSISADPTSWNNLNVLMKY-----NFMFQKFKPRDFHAQTIQSE 233 Query: 236 RLLIPPCWDTMQKIQNVNLKFCTIVVDLATKNLHQVFETNDLITCYE-SIFHNQGDSQQI 294 + IPPCWDT+ KIQ+VN +F + KN + + + L+ ++ SI S +I Sbjct: 234 TMFIPPCWDTISKIQSVNHEFNIALFKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKI 293 Query: 295 PDNELDFPCKSHQQFLKELRNK 316 D D P KSHQ FL+EL+NK Sbjct: 294 SDG--DIPYKSHQVFLQELQNK 313 >SPAC1B3.10c |||SEL1 repeat protein|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 680 Score = 29.3 bits (64), Expect = 0.71, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 83 VIYVNYVFSENPKGFAKDLLEVLRVCQNSTNEFHEEFFVTRDKQKTIMNEYHNFFSTVGS 142 ++ +Y F+E P + LE+LR + +EE + R+ ++ + +T Sbjct: 47 MVLSDYDFAETPSVRVQRALEILRYYYEQEDVTYEEIIIQRNHAIELLRSASHDNNTDAM 106 Query: 143 DEFS--PFFNFTIILPQIDDENKTFSM 167 + FF I+P+I+D K + M Sbjct: 107 LYLANIEFFGLFEIIPEIEDSVKYYDM 133 >SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 730 Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 13/103 (12%) Query: 214 NDNPISLQENHHTITSNTIDNDRLLIPPCWDTMQKIQNVNLKFCTIVVDLATKNLHQVFE 273 +D PI+L+ + + + + + DRL++ C + Q +++ ++K TIV Q+F+ Sbjct: 149 SDLPITLENSFSNLNTLSDNFDRLVLNFCRNIFQLVKSGHIK--TIV---------QIFK 197 Query: 274 TNDLITCYESIFHNQGDSQ-QIPDNELDFPCKSHQQFLKELRN 315 + + + + D++ +PD++ D P S Q ++LRN Sbjct: 198 IVEAEESSDEVLKSIRDAKSSLPDSQ-DGPFLSLQGMTRQLRN 239 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1077 Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 138 STVGSDEFSPFFNFTIILPQIDDENKTFSMNDDMKDF 174 S+ SD F +L +++DE+ FS+ DD+ DF Sbjct: 942 SSNASDSGYNAFVLKELLKEVNDESAIFSVLDDIVDF 978 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Fun_An_XP_001391598.1 (523 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 31 0.44 SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 30 0.61 SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 30 0.62 SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 2.4 SPAC139.06 ||SPAC23C4.01|histone acetyltransferase |Schizosaccha... 27 4.7 SPBC1652.01 |||hypothetical protein|Schizosaccharomyces pombe|ch... 27 7.1 >SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 566 Score = 30.8 bits (68), Expect = 0.44, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 346 PEPLTNGVDDRSSDEQTANAVDDGTSAVAIFEQTIQDPKRDTSMALTGSQRNGNKIEVDT 405 P L NG D +S E ++NA + + +I + + TS + GS R +K E D Sbjct: 414 PVKLENGTDYSTSQEPSSNANNQSSPTSSINGKASSESANGTSYS-KGSSRRNSKNETDE 472 Query: 406 SDMQSFLTK 414 +SFL + Sbjct: 473 EKRKSFLER 481 >SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 525 Score = 30.4 bits (67), Expect = 0.61, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 164 LLRHVLISLDDETKIVME--ENLTEWRDRKRGMDSSSGGAQG--FTSSAGPVTIPLGPGE 219 +L + + L D ++V+E +++ E R MD + G +G + P++IP+GPG Sbjct: 78 ILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGT 137 Query: 220 WDEGLGIPMCVVCQGADK 237 LG M V+ + D+ Sbjct: 138 ----LGRIMNVIGEPVDE 151 >SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 472 Score = 30.4 bits (67), Expect = 0.62, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%) Query: 147 DWSDPWTWIRRLREWVR-----LLRHVLISLD 173 DW + WTW + R W + LLRHV + L+ Sbjct: 358 DWWNCWTWDQFARTWNKPVHYFLLRHVYVPLN 389 >SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 391 Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 9/60 (15%) Query: 15 GNNSRPSSKDGP-KKNIWSSML----DSVANG----KRLPEKNLLILGGTPESQREFLDT 65 ++SRP + +G KN+ + L DS NG K LPE+N + GGT S ++DT Sbjct: 41 ASDSRPDALEGKYDKNVLARALKKSRDSCLNGALFEKFLPEENYKLSGGTVFSHVRYIDT 100 >SPAC139.06 ||SPAC23C4.01|histone acetyltransferase |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 378 Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 236 DKIEKLEKDHGWHEEQFDFILQFMRTL 262 DK E++EK H +E QFD Q ++ L Sbjct: 333 DKSERIEKIHNAYENQFDEYKQIVKKL 359 >SPBC1652.01 |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 386 Score = 26.9 bits (58), Expect = 7.1, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 480 SRSQRKETLSSSAGDEKAHNQALANFFAGLVKKPGA 515 S + E LSSS ++ N ++FFA L + PG+ Sbjct: 235 SAEESDELLSSSGRKTRSFNTPFSSFFASLEETPGS 270 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Fun_Nc_XP_957965.1 (531 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 2.2 SPCC1322.14c |||polyphosphate synthetase |Schizosaccharomyces po... 28 3.8 SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor|Schizos... 27 5.4 SPBC19C7.02 |ubr1|SPBC32F12.14|ubiquitin-protein ligase |Schizos... 27 6.1 SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 6.7 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 23/82 (28%) Query: 253 DVVLQFLRTILLRLHSSLGIHSL----------------------LKKQPLKHNVIDRDK 290 + +LQFLRT LL + +S I S+ K + I + Sbjct: 176 EFILQFLRTTLLSVPTS-SIVSISADPTSWNNLNVLMKYNFMFQKFKPRDFHAQTIQSET 234 Query: 291 ILVPPNWDSWGKIRVLREGFDV 312 + +PP WD+ KI+ + F++ Sbjct: 235 MFIPPCWDTISKIQSVNHEFNI 256 >SPCC1322.14c |||polyphosphate synthetase |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 721 Score = 27.7 bits (60), Expect = 3.8, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 390 IAGSSSHSTKLEVQTTETQQFLEKQLKLLDVYKQKNEEPTGHLARIKSARKTTSDSLTAE 449 I SS+ + QT+++ Q L+++ LLD+ K+K + +A + S K DS E Sbjct: 529 IGSSSTRNDNSTFQTSDSFQELDERTNLLDISKRKGRD--SFVAALNSRLKDIKDSFFLE 586 >SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 775 Score = 27.3 bits (59), Expect = 5.4, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 33 SMLDSVASAKRLPEKNILLLGGSVDSQREFFESLSRNELRRNTDRQGSRKPPIANSFALG 92 S+ ++ + LP I + +D+ + LSRN + T+ S IA G Sbjct: 111 SISKKLSENENLPVSKIAEVTNELDTLVRINDQLSRNHISGTTEEMQSSSSLIAGEVQPG 170 Query: 93 YTYYDVLDADQ-EDTLARISLYTLTDPSPAFASLIQPLITPQSI 135 ++ D L + EDT LY S AF +Q + +SI Sbjct: 171 ISFRDQLKVGKLEDT-----LYLGPTTSEAFIERLQNELELESI 209 >SPBC19C7.02 |ubr1|SPBC32F12.14|ubiquitin-protein ligase |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1958 Score = 26.9 bits (58), Expect = 6.1, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 400 LEVQTTETQQFLEKQLKLLDVYKQKNEEPTGHLARIKSARKTTSDSLTAEDDHLKQQAEA 459 L+++T+ ++ L LLDV + + + + + +SD++ D+L Q + Sbjct: 1383 LDIETSPSEHTQSYNLNLLDVLQHTLRDSLKDIYTLNTGADNSSDNVEENADNLFQSS-- 1440 Query: 460 KVLEHI 465 VL+H+ Sbjct: 1441 -VLDHV 1445 >SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 785 Score = 26.9 bits (58), Expect = 6.7, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 153 MRQLREWILLLRTVFQKLNRECSATMEEVMTVWRERGRGGGLNLDGTSAV 202 M L EW+ +R + + CS ++E W + +NL +++ Sbjct: 191 MEDLHEWLFSIRQKLPLVGKSCSQQIDEARRRWAREYKEDLVNLSSKTSI 240 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Fun_Gz_XP_389594.1 (512 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 28 2.6 SPBC28F2.11 |||transcription factor |Schizosaccharomyces pombe|c... 27 7.1 >SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 527 Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Query: 315 AEQVSNSWSE------DISTPRESMRFNDDDQGEVDEAELEEREQKSAIARYEG 362 A+ + W + D+S+P+ES ND + ++ E E E ++ + R G Sbjct: 279 ADSIDPDWHQWPDDLRDVSSPKESDGLNDSWSRQTNQVETENVENEAGVPRKRG 332 >SPBC28F2.11 |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 310 Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 348 LEEREQKSAIARYEGWCRDPNSGGLAVVENAMHGEKWISVESDDTQDFLEKQLKILEAFK 407 L ++ Q+S I G S + V AMH EKW S+ DD + + E+ K+ EA++ Sbjct: 126 LFQKNQRSEIKESLG----EKSNDVKEVNKAMH-EKWGSLSEDDRKTYEEEASKLREAYE 180 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Fun_Sc_NP_014028.1_Dyn3p (312 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 28 1.3 SPAC1687.18c |||conserved fungal family|Schizosaccharomyces pomb... 26 6.0 SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 8.0 >SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 500 Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%) Query: 3 NCNAWDKLLSQNESTINSTETATITAIIYSPSSKTLHQFINICFPEGSNSILDTTLINYA 62 N N+ +KL+ ATI A+ Y+ SKT+ F + SN I+ T L+ Sbjct: 125 NSNSSNKLVFGTPLEDALRRDATINALFYNLKSKTVEDFTGKGLVDLSNKIIRTPLVADE 184 Query: 63 TIG 65 T G Sbjct: 185 TFG 187 >SPAC1687.18c |||conserved fungal family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 559 Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 33/107 (30%) Query: 106 LILLDWTLNDQKLWLNELSYAFNKIKQLNDDNEFSVWCLNSGEIL-----------NLQR 154 L LL LN Q L ++E+S ++I L + + CL GEIL L+ Sbjct: 194 LQLLAMILN-QSLPMDEISTDSDQISILCLVTQIA-QCLRKGEILLAREILPKIHSKLES 251 Query: 155 HTTVWQSVHIDF--------------------ILQTLRSFCYFNDSS 181 T VW S +IDF ++ + FCY +DS+ Sbjct: 252 ETFVWPSSYIDFFIDDTSKISIKWMSINQLYLLIYLISGFCYISDST 298 >SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1402 Score = 25.8 bits (55), Expect = 8.0, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 196 EAQRLKYQELLKHFCEDRDMKDHIEMVTRSEILIPKGCDSIGLIKTVDERFEPTEVKE 253 E QR K + ++ + M ++ +LI KG DSI + ER EP E E Sbjct: 729 ETQRFKLMDTIEFSSARKRMSVIVKGPDNRYVLICKGADSI-----IFERLEPNEQVE 781 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Fun_Kl_XP_451441.1_unnamed (370 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 28 2.7 SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 27 3.4 SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 27 3.6 SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 27 3.7 SPAC1420.04c |cox1101|SPAPB17E12.01c|cytochrome c oxidase assemb... 27 4.9 SPAC19B12.13 |cox1102|cox11-b, SPAPB8E5.01|cytochrome c oxidase ... 27 5.0 SPBC3B9.12 |||TRAPP |Schizosaccharomyces pombe|chr 2|||Manual [S... 27 5.1 SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 6.2 SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 7.1 SPCC663.03 |pmd1||ABC transporter family|Schizosaccharomyces pom... 26 7.8 >SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 652 Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 88 PPPWKSSSIDLLPSILKSDPEKSSKRFVLL 117 PPPW+ S + +P + P SS F L Sbjct: 285 PPPWRDSDFETVPKLPIFYPNSSSPNFFSL 314 >SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1258 Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 16 CETNDTTKYVSIVLFCEKETTLKLFFQYIDGIDTNSEPKLAVLSPTLSPVGYYTKEITT 74 CE N T K +SIV C + ++L Y+ G DT +LA +P L ++ ++ T Sbjct: 652 CEFNSTRKRMSIVFRC-PDGKIRL---YVKGADTVIMERLASDNPYLQTTIHHLEDYAT 706 >SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-lysine forming] |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 368 Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 73 TTEDGWQVILNITCIPPPWKSSSIDLLPSILKSDPEKSSKRF 114 TT D V + PPP + SID LP++L P +SS+ F Sbjct: 296 TTFDHPTVEVKGVTTPPPLEVISIDHLPTLL---PRESSEAF 334 >SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 505 Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 302 LSHLYELQRKNSSLKRVTNQPAVVQDIGQDNTMALNDIASDNNHLQHVPDDDSALDSLVH 361 L+ LY L R + +R V QD+ D + +++D+ HL H A ++H Sbjct: 418 LTILY-LWRPTENNRRFAMSEQVAQDV--DEFEMTSSLSNDSLHLHHERPTSPANPHIIH 474 Query: 362 GIVQRHQ 368 G HQ Sbjct: 475 GSADEHQ 481 >SPAC1420.04c |cox1101|SPAPB17E12.01c|cytochrome c oxidase assembly protein Cox1101|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 753 Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Query: 157 SDYCKHLENTHTKWSSTAIDFMHQSLRT---LALHLKISLYSD 196 SDY L ++H +S+ +DF+ + + ++LH K +LY D Sbjct: 52 SDYKNELISSHRPEASSLLDFLVKDQKKSGDISLHTKFNLYVD 94 >SPAC19B12.13 |cox1102|cox11-b, SPAPB8E5.01|cytochrome c oxidase assembly protein Cox11 |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 753 Score = 26.6 bits (57), Expect = 5.0, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Query: 157 SDYCKHLENTHTKWSSTAIDFMHQSLRT---LALHLKISLYSD 196 SDY L ++H +S+ +DF+ + + ++LH K +LY D Sbjct: 52 SDYKNELISSHRPEASSLLDFLVKDQKKSGDISLHTKFNLYVD 94 >SPBC3B9.12 |||TRAPP |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 132 Score = 26.6 bits (57), Expect = 5.1, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 2/93 (2%) Query: 132 IEGLFVQLKQVSPETKAAGSVMMLHSDYCKHLENTHTKWSSTAIDFMHQSLRTLALHLKI 191 I G+ Q+SP ++G ++ + H+ THT + L L Sbjct: 38 IHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFY 97 Query: 192 SLYSD--LKNSVLAAKSAVGVPLSTEEQKSLID 222 LYSD LKN + + L E+ K ID Sbjct: 98 ELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYID 130 >SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 3227 Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 217 QKSLIDMV-NLENVNVTYGSDSLNKIAMIDENFPLSVYKDNLSTLKHDFSDVIP 269 +K+++D++ N N+ VT + M+D SV KD L +L FSD+IP Sbjct: 3036 EKTVVDLIPNGRNIPVTELNKQNYVNRMVDYKLRESV-KDQLKSLLDGFSDIIP 3088 >SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 347 Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 200 SVLAAKSAVGVPLSTEEQKSLIDMVNLENVNVTYGSDSLNKIAMIDENFPLSVYKD 255 +V+ + VPL +E L+D +N+ V YG++ + K +D++F + + D Sbjct: 57 AVVEILKSAKVPLKNKEFSDLVD----QNIGVGYGNEFIVKPTDLDKDFEKNHFLD 108 >SPCC663.03 |pmd1||ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1362 Score = 26.2 bits (56), Expect = 7.8, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 7/58 (12%) Query: 222 DMVNLENVNVTYGSDS--LNKIAMIDENFPLSVYKDNLSTLKHDFSDVIPEIKPRNMG 277 DM +LE +++ +D+ LN +N V++D TL+H S+++P + P ++G Sbjct: 702 DMASLEAPMMSHNTDTDTLNNKLNEKDNV---VFEDK--TLQHVASEIVPNLPPADVG 754 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Nem_Ce_NP_502518.2_dli-1 (443 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB24D3.02c |||amino acid permease family|Schizosaccharomyces ... 30 0.91 SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 29 1.0 SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.1 SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 28 1.9 >SPAPB24D3.02c |||amino acid permease family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 543 Score = 29.6 bits (65), Expect = 0.91, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 115 PVWSLDGNAACASLLKHALPATPAEAIFILTA 146 PVW L G +CA++++ A A+ A I I+++ Sbjct: 256 PVWVLSGFESCATIVEEAKNASKAAPIAIISS 287 >SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transaminase |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 696 Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 255 QLRKFCLSLGATLVFTSAKETKNIQLLQKYIVHRSFGTAFTSAAQVIERE 304 +LR S G +VF S +T+ + L K+I + G FTS A+++ RE Sbjct: 123 ELRTVLESRG--MVFESETDTECVAKLAKFIYDTTPGVDFTSLAKLVFRE 170 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 213 LLPLDQGTLTENCGV--TFMVVITKSDLVLGKEFTDAQFAKISIQ-LRKFCLSL-GATLV 268 LL + TL + G+ F VV+ + LG + + +Q LR LS+ +++V Sbjct: 136 LLDKNSTTLDISSGILLNFTVVLKQLKHALGLHTSVDNSQEFILQFLRTTLLSVPTSSIV 195 Query: 269 FTSAKET--KNIQLLQKYIVHRSFGTAFTSAAQVIERESIFVPAGWDGEKKI 318 SA T N+ +L KY AQ I+ E++F+P WD KI Sbjct: 196 SISADPTSWNNLNVLMKYNFMFQKFKPRDFHAQTIQSETMFIPPCWDTISKI 247 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 25/40 (62%) Query: 251 KISIQLRKFCLSLGATLVFTSAKETKNIQLLQKYIVHRSF 290 +I+ Q R++ ++ A+LVF S + N+Q + K ++ + F Sbjct: 137 EITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVF 176 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Art_Dm_NP_572694.1_Dlic2 (493 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23C4.08 |rho3||GTPase|Schizosaccharomyces pombe|chr 1|||Manu... 30 0.63 SPAC30.04c |||ABC transporter family|Schizosaccharomyces pombe|c... 29 1.0 SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pomb... 29 1.6 SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 29 1.8 SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 28 1.9 SPAC1142.03c |swi2|SPAC17G6.20c|Swi5-complex subunit Swi2|Schizo... 28 2.0 SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 28 3.4 SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 3.4 SPBP19A11.04c |mor2|cps12|HEAT repeat |Schizosaccharomyces pombe... 27 4.1 SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 5.3 SPAC323.04 |||ATPase|Schizosaccharomyces pombe|chr 1|||Manual [S... 27 5.6 SPCC663.03 |pmd1||ABC transporter family|Schizosaccharomyces pom... 27 5.8 SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 27 6.1 SPBC1539.08 |||ADP-ribosylation factor |Schizosaccharomyces pomb... 27 8.1 SPAC3C7.08c |elf1||AAA family ATPase|Schizosaccharomyces pombe|c... 27 8.6 SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 27 8.6 SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 8.8 SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 26 9.6 >SPAC23C4.08 |rho3||GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 205 Score = 30.0 bits (66), Expect = 0.63, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 18/25 (72%) Query: 42 GSTKLPSNKSVLVLGDNATGKTTLI 66 GS K P + +++LGD A GKT+L+ Sbjct: 6 GSKKKPIYRKIVILGDGAAGKTSLL 30 >SPAC30.04c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1469 Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 20/34 (58%) Query: 46 LPSNKSVLVLGDNATGKTTLIAKLQGVEDPKKGS 79 P NK +V+G +GK++LI+ L G KGS Sbjct: 638 FPRNKLSIVIGPTGSGKSSLISALLGELSLNKGS 671 >SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1396 Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 46 LPSNKSVLVLGDNATGKTTLIAKLQGV--EDPKKGSGLEYAYIDVK---DEYRDDMTRLG 100 L S+LVLG +G +TL+ L G+ E+ + L Y +D K +++ D++ G Sbjct: 99 LQPGSSLLVLGHEGSGGSTLLKALCGIVEENERLNGSLHYDGLDYKIAHSQFKADLSYCG 158 >SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit Bgs2|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1894 Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 15 SFTMKKKDAAAEKENLWSAILNEVQTQGSTKLPSNKSVLVLGDNATGKTTLIAKLQGVED 74 +F +K D AE L+ N V G+ + ++++ +LGD A GK L Sbjct: 1163 AFDLKTNDPYAETNALYQN--NPVAIMGAREYIFSENIGILGDVAAGKEQTFGTLFARTM 1220 Query: 75 PKKGSGLEYAYID 87 + G L Y + D Sbjct: 1221 AQIGGKLHYGHPD 1233 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 52 VLVLGDNATGKTTL-IAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLGVWVLDGDPGH 110 V ++GD++ GKT+L + +QG D + L +++ R+ +W L G Sbjct: 13 VGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREF 72 Query: 111 TNLLHYALNE 120 N+L N+ Sbjct: 73 VNMLPMVCND 82 >SPAC1142.03c |swi2|SPAC17G6.20c|Swi5-complex subunit Swi2|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 722 Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 AAEKENLWSAILNEVQTQGSTKLPSNKSVLVLGDNATGKTTLIAK 68 A+ KEN+W+ + +VQT+ + SN+ VL +N + T + K Sbjct: 437 ASRKENVWTGLYGKVQTE----MVSNRGEAVLNENNSKNRTNVTK 477 >SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 476 Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 17/77 (22%) Query: 86 IDVKDEYRDDMTRLGVWVLDGDPGHTNLLH------YALNETNYAHTLVILTVSMTQPW- 138 ++V +D T+ G ++LDG PG + +AL++ N+ ++L V + W Sbjct: 180 VNVLQRSKDQGTKDGRFLLDGAPGSGRSIALIQAELFALSQPNF----IVLPVHNCEGWV 235 Query: 139 ------GWLEQLNHWIK 149 G+ EQL W++ Sbjct: 236 NSTSSYGYDEQLKLWVQ 252 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Query: 243 DEHFDFIQQWIRNFCLRHGTSLFYTSVKED----KNCDVLYKYLTHRIYGLPFRTPALVV 298 D +FI Q++R L TS S+ D N +VL KY P A + Sbjct: 172 DNSQEFILQFLRTTLLSVPTSSI-VSISADPTSWNNLNVLMKYNFMFQKFKPRDFHAQTI 230 Query: 299 EKDAVLIPAGWDSLKKI 315 + + + IP WD++ KI Sbjct: 231 QSETMFIPPCWDTISKI 247 >SPBP19A11.04c |mor2|cps12|HEAT repeat |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 2196 Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 206 LLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH-FDFIQ 250 L PL+ DA N+G + +++V ++ Y + +Y+ D F++I+ Sbjct: 438 LTPLSTDAFTENIGPEKLMIVVRSVYYILHDMKYKKSDSTIFEYIE 483 >SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1115 Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%) Query: 376 ESPLRSQGVGSNKSGPRTPGTTGQSSPKKIDPKLTPATPGAEGV 419 E ++ G GS S P +P + + S D KL PA+P V Sbjct: 992 EERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKLVPASPDKSAV 1035 >SPAC323.04 |||ATPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 487 Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 25/49 (51%) Query: 43 STKLPSNKSVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDE 91 S +L ++ ++G+ +G+TT + +QG P + Y ++ K + Sbjct: 24 SFELARKQNWAIIGNTGSGRTTFLRCIQGSFTPSPSTSFSYPFLKGKSD 72 >SPCC663.03 |pmd1||ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1362 Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query: 47 PSNKSVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKD 90 PS K ++G + +GK+T+I ++ DP G ++D KD Sbjct: 446 PSGKITALVGASGSGKSTIIGLVERFYDPIGGQ----VFLDGKD 485 >SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit Sfc4|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1006 Score = 26.9 bits (58), Expect = 6.1, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 125 HTLVILTVSMTQPWGWLEQLNHWIKVLGQHIDSLQ-----LDAKEKEAARQRLTTTWQSY 179 H L IL S+ + E LN W+ + + ID +++K AR L T Y Sbjct: 595 HKLDILRQSLKKEENVSESLNEWLAIASELIDEFVSIKAFFPSEKKARARAGLLTRRTRY 654 Query: 180 CEVGDDL 186 + D L Sbjct: 655 ASLNDQL 661 >SPBC1539.08 |||ADP-ribosylation factor |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 184 Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 2/29 (6%) Query: 44 TKLPSNKS--VLVLGDNATGKTTLIAKLQ 70 ++L SNK +L+LG +A GKTT++ KL+ Sbjct: 14 SRLFSNKEMRILMLGLDAAGKTTILYKLK 42 >SPAC3C7.08c |elf1||AAA family ATPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1057 Score = 26.6 bits (57), Expect = 8.6, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 23/43 (53%) Query: 46 LPSNKSVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDV 88 L + V +LG N GK+TLI L G P++G ++ + V Sbjct: 716 LSLSSRVAILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPNLRV 758 >SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 767 Score = 26.6 bits (57), Expect = 8.6, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 141 LEQLNHWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCE-VGDDLDPGSPVKRTMRNN 199 L++L+H +L + + S+ LD EA L+ + Q+Y + V D++ GS + T+ Sbjct: 162 LQRLSHMETILSKLMPSMSLDLPSLEAKIAELSESLQTYPDKVLTDIELGSYQQVTLNET 221 Query: 200 SIDEDD 205 +D Sbjct: 222 QTYYED 227 >SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 903 Score = 26.6 bits (57), Expect = 8.8, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Query: 34 ILNEVQTQGST-KLPSNKSVLVLGDNATGKTTLIAKLQGVEDPKKGSGL 81 IL ++Q S LPS ++V+G ++GK++++ + G E KGS + Sbjct: 250 ILQDIQDNNSAVTLPS---IVVIGSQSSGKSSVLEAIVGHEFLPKGSNM 295 >SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 211 Score = 26.2 bits (56), Expect = 9.6, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 49 NKSVLVLGDNATGKTTLIAKLQGVE-DPKKGSGLEYAYIDVKDEYRDDMT-RLGVWVLDG 106 N+ +++LGD+A GK++L+ + + D + S + A++ ++ + +L +W G Sbjct: 14 NQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAG 73 Query: 107 DPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKVL 151 + +L N A I+ +TQ LE+ WIK L Sbjct: 74 QERYKSLAPMYYRNANCA----IVVYDITQA-ASLEKAKSWIKEL 113 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Dr_NP_001095898.1 (501 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.25 SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manu... 28 2.6 SPAC30.04c |||ABC transporter family|Schizosaccharomyces pombe|c... 28 3.2 SPCC663.03 |pmd1||ABC transporter family|Schizosaccharomyces pom... 28 3.6 SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Sch... 27 5.3 SPAC23A1.10 |ef1a-b||translational elongation factor EF-1 alpha ... 27 5.5 SPCC794.09c |ef1a-a||translational elongation factor EF-1 alpha ... 27 5.5 SPBC839.15c |ef1a-c||translational elongation factor EF-1 alpha ... 27 5.5 SPAC9E9.12c |||ABC transporter family |Schizosaccharomyces pombe... 27 6.0 SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pomb... 27 6.7 SPAC17G6.03 |||calcineurin-like phosphoesterase |Schizosaccharom... 27 8.0 SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 8.7 SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 26 9.4 SPCC895.09c |||RNA helicase|Schizosaccharomyces pombe|chr 3|||Ma... 26 10.0 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 31.6 bits (70), Expect = 0.25, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 275 NLDLLYKYLVHRLYGFPFNSPAQVVEKDSVFIPSGWDNEKKIAILHENFQM 325 NL++L KY P + AQ ++ +++FIP WD KI ++ F + Sbjct: 206 NLNVLMKYNFMFQKFKPRDFHAQTIQSETMFIPPCWDTISKIQSVNHEFNI 256 >SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 469 Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%) Query: 55 NVVVMGEVGSGKTTLVAKLQGVEEY 79 NV+V+GE GSGK+TLV L + Y Sbjct: 97 NVLVLGESGSGKSTLVNTLLNRDVY 121 >SPAC30.04c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1469 Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 50 LPSGKNVVVMGEVGSGKTTLVAKLQGVEEYMKG 82 P K +V+G GSGK++L++ L G KG Sbjct: 638 FPRNKLSIVIGPTGSGKSSLISALLGELSLNKG 670 >SPCC663.03 |pmd1||ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1362 Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 6/44 (13%) Query: 51 PSGKNVVVMGEVGSGKTTLVAKLQ------GVEEYMKGRGLEYL 88 PSGK ++G GSGK+T++ ++ G + ++ G+ L L Sbjct: 446 PSGKITALVGASGSGKSTIIGLVERFYDPIGGQVFLDGKDLRTL 489 >SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1530 Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 8/45 (17%) Query: 53 GKNVVVMGEVGSGKTTLVAKL-----QGV---EEYMKGRGLEYLY 89 GK +MGE G+GKTTL+ L GV + + GRGL+ + Sbjct: 911 GKLTALMGESGAGKTTLLNVLAQRVDTGVVTGDMLVNGRGLDSTF 955 >SPAC23A1.10 |ef1a-b||translational elongation factor EF-1 alpha |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 460 Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%) Query: 55 NVVVMGEVGSGKTT----LVAKLQGVEEYMKGRGLEYLYFNVHDDDIDDQSRCNAWVLD 109 NVVV+G V SGK+T L+ K G+++ R +E F ++ S AWVLD Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDK----RTIE--KFEKEATELGKGSFKYAWVLD 61 >SPCC794.09c |ef1a-a||translational elongation factor EF-1 alpha |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 460 Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%) Query: 55 NVVVMGEVGSGKTT----LVAKLQGVEEYMKGRGLEYLYFNVHDDDIDDQSRCNAWVLD 109 NVVV+G V SGK+T L+ K G+++ R +E F ++ S AWVLD Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDK----RTIE--KFEKEATELGKGSFKYAWVLD 61 >SPBC839.15c |ef1a-c||translational elongation factor EF-1 alpha |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 460 Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%) Query: 55 NVVVMGEVGSGKTT----LVAKLQGVEEYMKGRGLEYLYFNVHDDDIDDQSRCNAWVLD 109 NVVV+G V SGK+T L+ K G+++ R +E F ++ S AWVLD Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDK----RTIE--KFEKEATELGKGSFKYAWVLD 61 >SPAC9E9.12c |||ABC transporter family |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1427 Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 50 LPSGKNVVVMGEVGSGKTTLVAKLQGVEEYMKGR 83 +P + +V+G GSGK+TL L G + G+ Sbjct: 604 IPRNQFTLVVGSTGSGKSTLAMALLGELHVISGK 637 >SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1396 Score = 26.9 bits (58), Expect = 6.7, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 50 LPSGKNVVVMGEVGSGKTTLVAKLQGVEEYMKGRGLEYLYFNVHDDDID 98 L G +++V+G GSG +TL+ L G+ E E L ++H D +D Sbjct: 99 LQPGSSLLVLGHEGSGGSTLLKALCGIVEEN-----ERLNGSLHYDGLD 142 >SPAC17G6.03 |||calcineurin-like phosphoesterase |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 635 Score = 26.6 bits (57), Expect = 8.0, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Query: 220 GLPIVVVCTKCDAISTLEKEHDYKDEHLDFIQSHIRRFCLQYGAALLYTSMKENKNLDLL 279 G+P K IS+L Y E L FI IRR Q +++S++ K+ + Sbjct: 292 GIPSFKSLVKLSGISSLMGVESYLAERLRFIGESIRRSSQQ-----IFSSLQSAKSASVS 346 Query: 280 Y--KYLVHRLYGFPFNSPAQ 297 + Y+ GF F+S + Sbjct: 347 FSRSYIDWNPEGFMFHSKTK 366 >SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1049 Score = 26.6 bits (57), Expect = 8.7, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 123 SLENLEDSLILFVVDLSRPWLALDSLQKWGSVVRDFVDKLRVPPETMRELEHRLTKQFQE 182 + E+ ED L +V+ P + L+K + +VDKL V + + L L KQ+QE Sbjct: 245 TTEDFEDKETLELVNRLNPVVWRTYLRK---SLNSYVDKLEVYCQKRKSLFEELNKQYQE 301 >SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 565 Score = 26.2 bits (56), Expect = 9.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 278 LLYKYLVHRLYGFPFNSPAQVVEKDSVFIPSGWDNEKKIAILHENFQMVKAEDSFEDVIV 337 + Y Y H L+ ++ ++ E + +F S + ++ + +++ +AE FE+++ Sbjct: 239 IFYVYASHELHQVNSSAYEKLAEAEIIFPNSRYLKTQRALLTYDSRDFDEAESLFENILT 298 Query: 338 KPPVR 342 P R Sbjct: 299 NDPYR 303 >SPCC895.09c |||RNA helicase|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1327 Score = 26.2 bits (56), Expect = 10.0, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 13/46 (28%) Query: 41 EVSTRSRSKLPSGKN-------------VVVMGEVGSGKTTLVAKL 73 ++ R R KLP+ ++ VV+ GE GSGK+T V + Sbjct: 568 QLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQF 613 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Hs_NP_057225.1_DNCLI1 (523 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC18G6.03 |ypt3||GTPase|Schizosaccharomyces pombe|chr 1|||Manu... 34 0.058 SPAC4C5.02c |ryh1|hos1|GTPase|Schizosaccharomyces pombe|chr 1|||... 32 0.29 SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.30 SPCC965.04c |||AAA family ATPase|Schizosaccharomyces pombe|chr 3... 30 0.89 SPBC29A3.09c |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual ... 28 2.4 SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pomb... 28 2.7 SPBC8D2.20c |sec31||COPII-coated vesicle component |Schizosaccha... 28 2.9 SPCC417.08 |tef3|EF-3|translation elongation factor 3 |Schizosac... 28 3.2 SPBC405.04c |ypt7||GTPase|Schizosaccharomyces pombe|chr 2|||Manu... 27 8.4 SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manu... 27 8.5 SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Sch... 27 8.8 >SPAC18G6.03 |ypt3||GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 214 Score = 33.9 bits (76), Expect = 0.058, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 55/108 (50%), Gaps = 12/108 (11%) Query: 71 LLLGEDGAGKTSLIRKIQGIE---EYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLY 127 +L+G+ G GK++L+ + E E K G+E+ N+ +++ + + +W G Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNK--KIKAQIWDTAGQER 71 Query: 128 HKGLLK-FSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVD 174 ++ + + AV ++V D++K ++ D++ +W +REH D Sbjct: 72 YRAITSAYYRGAVG-----ALIVYDITKQ-SSFDNVGRWLKELREHAD 113 >SPAC4C5.02c |ryh1|hos1|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 201 Score = 31.6 bits (70), Expect = 0.29, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%) Query: 70 VLLLGEDGAGKTSLIRKI---QGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDL 126 ++ LGE GKTSLI + Q Y+ G+++L ++ EDR R +W G Sbjct: 14 LVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQE 71 Query: 127 YHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVR 170 + L+ ++D+ V ++V + + +KW VR Sbjct: 72 RFRSLI-----PSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVR 110 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 31.2 bits (69), Expect = 0.30, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 290 NKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGILHENFQTL---KAE 346 N N+ + Y ++ QK P A ++ + +FIP WD KI ++ F + Sbjct: 206 NLNVLMKYNFMFQKFK--PRDFHAQTIQSETMFIPPCWDTISKIQSVNHEFNIALFKQTA 263 Query: 347 DNFEDII 353 NF D + Sbjct: 264 KNFYDTL 270 >SPCC965.04c |||AAA family ATPase|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 709 Score = 29.6 bits (65), Expect = 0.89, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Query: 58 TRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEE----YKKGRGLEYLYLNVHDEDRDD 113 TR KLP G VLL G G GKT L R + G + G + +Y+ V + + Sbjct: 293 TRLGGKLPRG--VLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRE 350 Query: 114 -----QTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDM 152 + + I +L G + + DA ++ TL L+VD+ Sbjct: 351 LFAAARKQAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDL 394 >SPBC29A3.09c |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 736 Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 64 LPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILD 123 L G+ L G +G GK++L+R + + L+V E D T +LD Sbjct: 205 LAQGRRYGLTGRNGIGKSTLLR---ALSRREIAIPTHITILHVEQEMTGDDTPALQSVLD 261 Query: 124 GDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVD 174 D++ K L++ + T+ + ++SK TA ++ + R+ +D Sbjct: 262 ADVWRKYLIQDQEKITNRLSTIEKELEELSKDQTADQAISRRLERERDELD 312 >SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1396 Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query: 64 LPAGKNVLLLGEDGAGKTSLIRKIQGI-EEYKKGRG-LEYLYLN---VHDEDRDDQTRC 117 L G ++L+LG +G+G ++L++ + GI EE ++ G L Y L+ H + + D + C Sbjct: 99 LQPGSSLLVLGHEGSGGSTLLKALCGIVEENERLNGSLHYDGLDYKIAHSQFKADLSYC 157 >SPBC8D2.20c |sec31||COPII-coated vesicle component |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1224 Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 383 LAKQPPTAAGRPVDASPRVPGGSPRTP 409 +A Q P AA + +SP +P +P TP Sbjct: 960 VAPQSPVAAASRISSSPNMPPSNPYTP 986 >SPCC417.08 |tef3|EF-3|translation elongation factor 3 |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1047 Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 20/29 (68%) Query: 59 RSRSKLPAGKNVLLLGEDGAGKTSLIRKI 87 R+R +L G+ L G +G+GK++L+R I Sbjct: 452 RTRLRLKRGRRYGLCGPNGSGKSTLMRAI 480 >SPBC405.04c |ypt7||GTPase|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 205 Score = 26.6 bits (57), Expect = 8.4, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 7/47 (14%) Query: 70 VLLLGEDGAGKTSLI-----RKIQGIEEYKKGRGLEYLYLNVHDEDR 111 V++LGE G GKTS++ RK ++YK G ++L V +D+ Sbjct: 11 VIILGESGVGKTSIMNQYVNRKFS--KDYKATIGADFLTKEVLVDDK 55 >SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 469 Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 18/25 (72%) Query: 69 NVLLLGEDGAGKTSLIRKIQGIEEY 93 NVL+LGE G+GK++L+ + + Y Sbjct: 97 NVLVLGESGSGKSTLVNTLLNRDVY 121 >SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1530 Score = 26.6 bits (57), Expect = 8.8, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 67 GKNVLLLGEDGAGKTSLI 84 GK L+GE GAGKT+L+ Sbjct: 911 GKLTALMGESGAGKTTLL 928 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Mm_NP_666341.1_LIC-1 (523 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC18G6.03 |ypt3||GTPase|Schizosaccharomyces pombe|chr 1|||Manu... 35 0.034 SPAC4C5.02c |ryh1|hos1|GTPase|Schizosaccharomyces pombe|chr 1|||... 34 0.041 SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.30 SPCC965.04c |||AAA family ATPase|Schizosaccharomyces pombe|chr 3... 30 0.60 SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 29 1.4 SPBC1347.12 |||actin-like protein|Schizosaccharomyces pombe|chr ... 28 2.9 SPBC29A3.09c |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual ... 28 3.1 SPBC8D2.20c |sec31||COPII-coated vesicle component |Schizosaccha... 28 3.1 SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pomb... 28 3.6 SPCC417.08 |tef3|EF-3|translation elongation factor 3 |Schizosac... 28 3.6 SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 27 5.3 SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Sch... 27 8.8 SPBC405.04c |ypt7||GTPase|Schizosaccharomyces pombe|chr 2|||Manu... 27 8.8 SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manu... 27 9.0 >SPAC18G6.03 |ypt3||GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 214 Score = 34.7 bits (78), Expect = 0.034, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 12/108 (11%) Query: 71 LLLGEDGAGKTSLIRRIQGIE---EYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLY 127 +L+G+ G GK++L+ R E E K G+E+ N+ +++ + + +W G Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNK--KIKAQIWDTAGQER 71 Query: 128 HKGLLKFSLDALSLRDTLVMLVV-DMSKPWTALDSLQKWASVVREHVD 174 ++ ++ + R + L+V D++K ++ D++ +W +REH D Sbjct: 72 YR-----AITSAYYRGAVGALIVYDITKQ-SSFDNVGRWLKELREHAD 113 >SPAC4C5.02c |ryh1|hos1|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 201 Score = 34.3 bits (77), Expect = 0.041, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 10/104 (9%) Query: 70 VLLLGEDGAGKTSLIRRI---QGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDL 126 ++ LGE GKTSLI R Q Y+ G+++L ++ EDR R +W G Sbjct: 14 LVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQE 71 Query: 127 YHKGLLKFSLDALSLRDTLVMLVVDMSKPWTALDSLQKWASVVR 170 + L+ +RD+ V ++V + + +KW VR Sbjct: 72 RFRSLI-----PSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVR 110 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 31.2 bits (69), Expect = 0.30, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 10/105 (9%) Query: 257 HDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKE-----NKNIDLVYKYIVQKLYGFPYKI 311 H D +FI +R L + I + + N N+ + Y ++ QK P Sbjct: 168 HTSVDNSQEFILQFLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFK--PRDF 225 Query: 312 PAVVVEKDAVFIPAGWDNDKKIGILHENFQTL---KVEDNFEDII 353 A ++ + +FIP WD KI ++ F + NF D + Sbjct: 226 HAQTIQSETMFIPPCWDTISKIQSVNHEFNIALFKQTAKNFYDTL 270 >SPCC965.04c |||AAA family ATPase|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 709 Score = 30.4 bits (67), Expect = 0.60, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Query: 58 TRSRSKLPTGKNVLLLGEDGAGKTSLIRRIQGIEE----YKKGRGLEYLYLNVHDEDRDD 113 TR KLP G VLL G G GKT L R + G + G + +Y+ V + + Sbjct: 293 TRLGGKLPRG--VLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRE 350 Query: 114 -----QTRCNVWILDGDLYHKGLLKFSLDALSLRDTLVMLVVDM 152 + + I +L G + + DA +R TL L+VD+ Sbjct: 351 LFAAARKQAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDL 394 >SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 957 Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Query: 161 SLQKWASVVREHVDKLKIPPEEMKEMEQKLIRDFQEYVEPGEDFPASPQRRTTGAQEDRG 220 ++++W E + + P K E+KL DF EY EDF + R Q DRG Sbjct: 115 NIRQWLKDKFEKDKRAAVCPTTTKSEEEKLENDF-EYSFDLEDFSSENFR-----QYDRG 168 Query: 221 DSVVLPLGAD 230 D +V G++ Sbjct: 169 DLLVFYRGSE 178 >SPBC1347.12 |||actin-like protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 379 Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 31/149 (20%) Query: 151 DMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKEMEQKLIRDFQEYVE-PGEDFPASP- 208 DM + W+ + S Q+ ++ EH L PP ++K+ F E + P F P Sbjct: 85 DMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPV 144 Query: 209 -----QRRTTGAQEDRGDSVVLPLGADTLTHNLGLPVLVVCTKCDAISV---LEKEHDYR 260 RTTG +VL G D LTH+ +P+ D S+ +++E Sbjct: 145 LALYASARTTG--------IVLECG-DGLTHS--VPIY------DGFSIPSAIQQEEIGG 187 Query: 261 DEHFDFIQSHIRKFCLQYGAALIYTSVKE 289 + D++Q +RK G L+ ++ KE Sbjct: 188 RDVTDYLQLQLRK----SGHELVSSAEKE 212 >SPBC29A3.09c |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 736 Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 64 LPTGKNVLLLGEDGAGKTSLIRRIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILD 123 L G+ L G +G GK++L+R + + L+V E D T +LD Sbjct: 205 LAQGRRYGLTGRNGIGKSTLLR---ALSRREIAIPTHITILHVEQEMTGDDTPALQSVLD 261 Query: 124 GDLYHKGLLKFSLDALSLRDTLVMLVVDMSKPWTALDSLQKWASVVREHVD 174 D++ K L++ + T+ + ++SK TA ++ + R+ +D Sbjct: 262 ADVWRKYLIQDQEKITNRLSTIEKELEELSKDQTADQAISRRLERERDELD 312 >SPBC8D2.20c |sec31||COPII-coated vesicle component |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1224 Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 383 LAKQPPTAAGRPVDASPRVPGGSPRTP 409 +A Q P AA + +SP +P +P TP Sbjct: 960 VAPQSPVAAASRISSSPNMPPSNPYTP 986 >SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1396 Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query: 64 LPTGKNVLLLGEDGAGKTSLIRRIQGI-EEYKKGRG-LEYLYLN---VHDEDRDDQTRC 117 L G ++L+LG +G+G ++L++ + GI EE ++ G L Y L+ H + + D + C Sbjct: 99 LQPGSSLLVLGHEGSGGSTLLKALCGIVEENERLNGSLHYDGLDYKIAHSQFKADLSYC 157 >SPCC417.08 |tef3|EF-3|translation elongation factor 3 |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1047 Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 20/29 (68%) Query: 59 RSRSKLPTGKNVLLLGEDGAGKTSLIRRI 87 R+R +L G+ L G +G+GK++L+R I Sbjct: 452 RTRLRLKRGRRYGLCGPNGSGKSTLMRAI 480 >SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 720 Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 60 SRSKLPTGK------NVLLLGEDGAGKTSLIR---RIQGIEEYKKGRGLEYLYLNVHDED 110 S+ LP G NVLLLG+ G K+ ++ R+ I Y G+G L + Sbjct: 352 SKKILPDGMRLRGDINVLLLGDPGTAKSQFLKFVERLAPIAVYTSGKGSSAAGLTASIQ- 410 Query: 111 RDDQTR 116 RD TR Sbjct: 411 RDSVTR 416 >SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1530 Score = 26.6 bits (57), Expect = 8.8, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 67 GKNVLLLGEDGAGKTSLI 84 GK L+GE GAGKT+L+ Sbjct: 911 GKLTALMGESGAGKTTLL 928 >SPBC405.04c |ypt7||GTPase|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 205 Score = 26.6 bits (57), Expect = 8.8, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 70 VLLLGEDGAGKTSLIRRI---QGIEEYKKGRGLEYLYLNVHDEDR 111 V++LGE G GKTS++ + + ++YK G ++L V +D+ Sbjct: 11 VIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDK 55 >SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 469 Score = 26.6 bits (57), Expect = 9.0, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 18/25 (72%) Query: 69 NVLLLGEDGAGKTSLIRRIQGIEEY 93 NVL+LGE G+GK++L+ + + Y Sbjct: 97 NVLVLGESGSGKSTLVNTLLNRDVY 121 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Dr_NP_001017669.1 (498 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1902.02 ||SPCC663.16c|ketopantoate reductase |Schizosaccharo... 34 0.052 SPAC18G6.03 |ypt3||GTPase|Schizosaccharomyces pombe|chr 1|||Manu... 31 0.47 SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 30 0.54 SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 30 0.93 SPCC584.15c |||arrestin family|Schizosaccharomyces pombe|chr 3||... 28 2.0 SPAC11E3.13c |||GPI anchored protein |Schizosaccharomyces pombe|... 28 2.3 SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manu... 28 3.4 SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pomb... 28 3.6 SPAC6G9.04 |||pleckstrin homology domain|Schizosaccharomyces pom... 27 4.2 SPCC965.04c |||AAA family ATPase|Schizosaccharomyces pombe|chr 3... 27 5.3 SPBC29A3.09c |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual ... 27 6.0 SPAC9E9.12c |||ABC transporter family |Schizosaccharomyces pombe... 27 6.1 SPAC821.06 |spn2||septin|Schizosaccharomyces pombe|chr 1|||Manua... 27 6.2 SPAPYUG7.06 |||DUF862|Schizosaccharomyces pombe|chr 1|||Manual [... 27 6.4 SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Sch... 27 6.5 SPCC737.09c |hmt1|SPCC74.08c|ABC transporter family|Schizosaccha... 27 6.5 SPCC663.03 |pmd1||ABC transporter family|Schizosaccharomyces pom... 27 8.5 SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein|Schizo... 27 8.5 >SPCC1902.02 ||SPCC663.16c|ketopantoate reductase |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 574 Score = 33.9 bits (76), Expect = 0.052, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 15/145 (10%) Query: 269 VKEEKNLDLLYKY-----MVHKIYDFQFSSPALVVEKDAVLIPSGWDNDKKIGILHENFT 323 + +E NL L+Y+ ++ + D FS + + P D K+ I++ Sbjct: 227 INDEPNLALMYRLKSFAKVIDGLMDEAFS---IAQAQGCEFEPEKLDVLKR-HIVNRMLA 282 Query: 324 TVRPEDPFEDFITKPPVRKLV---HDKEISAEDEQVFLMKQQSLLAKQPATPTRGTESPA 380 T RP P++D+I P+ V + EI A++ V + + ++LLA A R A Sbjct: 283 TPRPSYPYQDYIAHRPLEVAVLLGYPVEI-AKELGVSVPRMETLLALFDAKNKRNLTVRA 341 Query: 381 RTASGSP--RPTGRTGPTNVASVSP 403 T SP P R P AS SP Sbjct: 342 GTPQSSPNFNPAMRRSPVGAASRSP 366 >SPAC18G6.03 |ypt3||GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 214 Score = 30.8 bits (68), Expect = 0.47, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 49/107 (45%), Gaps = 10/107 (9%) Query: 54 LLFGEDGSGKTTLMSKLQGAEHNKKGR---GLEYLYLNVQDEDIDDLTRCSVWILDGDLY 110 +L G+ G GK+ L+ + E N + + G+E+ N+ ++ + +W G Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDN--KKIKAQIWDTAGQER 71 Query: 111 HKGLLKFAVTAESLKDSLAVFVVDMSRPWTIMESLQKWTSVLREHVD 157 ++ A+T+ + ++ +V + +++ +W LREH D Sbjct: 72 YR-----AITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD 113 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 30.4 bits (67), Expect = 0.54, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%) Query: 219 GIPMLIVCTKCDAVNVLEKEHDYKEEHFDFIQSHIRRFCLQYGAGLIYTSVKEEKNLDLL 278 +P+LI TK D +E D +E I RR+ A L++ S N+ + Sbjct: 115 AVPILI-GTKYDHFMTFPRE-DQEE-----ITKQARRYAKAMKASLVFCSTSHSINVQKI 167 Query: 279 YKYMVHKIYDFQFSSPALVVEKDAVL 304 +K ++ K++D + + P + D +L Sbjct: 168 FKIVLAKVFDLKCTIPEIKNVGDPIL 193 >SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 299 Score = 29.6 bits (65), Expect = 0.93, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%) Query: 181 VEPEEA-TPGSPQRRAPAAAGEDESV------LLPLADNVLTHNLGIP 221 +EPE A T +P++RA + E +S+ +LP+ DN+ H G P Sbjct: 162 IEPEVAPTTKTPKKRAALSNEEKQSLKKFQSAMLPMLDNISNHRFGAP 209 >SPCC584.15c |||arrestin family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 594 Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Query: 366 AKQPATPTRGTESPARTASGSPRPTGRTGPTNVASVSPMT 405 A +P++PT E P+ T + +P P PT +A P T Sbjct: 532 ATRPSSPTESVEIPSNTTTIAPSPV----PTIIAPALPST 567 >SPAC11E3.13c |||GPI anchored protein |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 510 Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 372 PTRGTESPARTASGSPRPTGRTGPTNVASVSPMTAVKKPDPNMKGAAANEGVL 424 PT +E+ SG+ +P G P+N + TA+ P P+ N ++ Sbjct: 366 PTMPSEAKGFIESGAGQPLGFNAPSNQEFSANATALVSPGPHSVSTTINTNIV 418 >SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 469 Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 16/19 (84%) Query: 52 NVLLFGEDGSGKTTLMSKL 70 NVL+ GE GSGK+TL++ L Sbjct: 97 NVLVLGESGSGKSTLVNTL 115 >SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1396 Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 47 LPSGKNVLLFGEDGSGKTTLMSKLQG-AEHNKKGRG 81 L G ++L+ G +GSG +TL+ L G E N++ G Sbjct: 99 LQPGSSLLVLGHEGSGGSTLLKALCGIVEENERLNG 134 >SPAC6G9.04 |||pleckstrin homology domain|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1318 Score = 27.3 bits (59), Expect = 4.2, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%) Query: 178 QEYVEPEEATPGSPQRRAPAAAGEDESVLLPLADNVLTHNLGIPMLIVCTKCDAVNVLEK 237 Q E T +P +AP + + + LA + N+ +P I + + + + K Sbjct: 361 QALAAAESPTTKAPTTKAPTSEAPPKGHVKQLAKQL--GNIYMPQSINNVEPTSHSSISK 418 Query: 238 EHDYKEEHFDFIQSHIRRFCLQYGAGLIYTSVKEEKNLDL 277 + E+ + S I R CL G G ++ S+K EKNL+L Sbjct: 419 VVNPSEK----VISKIERACLA-GNGNVHPSIKMEKNLEL 453 >SPCC965.04c |||AAA family ATPase|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 709 Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats. Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 41 TRSSSKLPSGKNVLLFGEDGSGKTTLMSKLQG 72 TR KLP G VLL G G+GKT L + G Sbjct: 293 TRLGGKLPRG--VLLTGPPGTGKTMLARAVAG 322 >SPBC29A3.09c |||ATPase|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 736 Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 39 VSTRSSSKLPSGKNVLLFGEDGSGKTTLMSKLQGAEHNKKGRGLEYLYLNVQDEDIDDLT 98 + T +S L G+ L G +G GK+TL+ L E L+V+ E D T Sbjct: 197 ILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRRE---IAIPTHITILHVEQEMTGDDT 253 Query: 99 RCSVWILDGDLYHKGLLK 116 +LD D++ K L++ Sbjct: 254 PALQSVLDADVWRKYLIQ 271 >SPAC9E9.12c |||ABC transporter family |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1427 Score = 26.9 bits (58), Expect = 6.1, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 47 LPSGKNVLLFGEDGSGKTTLMSKLQGAEHNKKGR 80 +P + L+ G GSGK+TL L G H G+ Sbjct: 604 IPRNQFTLVVGSTGSGKSTLAMALLGELHVISGK 637 >SPAC821.06 |spn2||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 331 Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%) Query: 52 NVLLFGEDGSGKTTLMSKLQGAE-HNKKGRGLEY 84 NV++ G GSGK+TL++ L A + KGR L+Y Sbjct: 34 NVMVVGPSGSGKSTLINTLFSAHLMDSKGR-LDY 66 >SPAPYUG7.06 |||DUF862|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 201 Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 85 LYLNVQDEDIDDLTRCSVWILDGDLYHKGLL----KFAVTAESLKDSLAVFVVDMSRP 138 +Y+NV D D W L +YH GL+ ++A A + S VF M RP Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFAT-MPRP 59 >SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1530 Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 50 GKNVLLFGEDGSGKTTLMSKL 70 GK L GE G+GKTTL++ L Sbjct: 911 GKLTALMGESGAGKTTLLNVL 931 >SPCC737.09c |hmt1|SPCC74.08c|ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 830 Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Query: 50 GKNVLLFGEDGSGKTTLMSKLQGAEHNKKGRGLEYLYLNVQDEDIDDLTRCSV 102 GK + L GE G GK+T+M L G + + D+DI ++T S+ Sbjct: 610 GKVIALVGESGGGKSTIMRILLRFFDVNSGS------ITIDDQDIRNVTLSSL 656 >SPCC663.03 |pmd1||ABC transporter family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1362 Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 48 PSGKNVLLFGEDGSGKTTLM 67 PSGK L G GSGK+T++ Sbjct: 446 PSGKITALVGASGSGKSTII 465 >SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 832 Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 33 SSILSEVSTRSSSKLPSGKNVLLF--GEDGSGKTTLMSKLQG 72 SS+ E+S S + G NV +F G+ GSGKT MS G Sbjct: 550 SSVFEEISQLIQSAI-DGYNVSIFAYGQTGSGKTYTMSSQDG 590 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Hs_NP_006132.1_LIC2 (492 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.7 SPAPYUG7.06 |||DUF862|Schizosaccharomyces pombe|chr 1|||Manual [... 28 1.8 SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manu... 28 2.3 SPAC9E9.12c |||ABC transporter family |Schizosaccharomyces pombe... 28 2.6 SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pomb... 28 3.9 SPBC119.15 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 4.8 SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 27 5.1 SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 27 6.9 SPAC821.06 |spn2||septin|Schizosaccharomyces pombe|chr 1|||Manua... 27 8.5 SPCC417.08 |tef3|EF-3|translation elongation factor 3 |Schizosac... 26 9.8 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 11/91 (12%) Query: 244 HDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEE---KNLDLLYKYIV----HKTYGFHF 296 H D +FI LR L + I + + NL++L KY K FH Sbjct: 168 HTSVDNSQEFILQFLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFKPRDFH- 226 Query: 297 TTPALVVEKDAVFIPAGWDNEKKIAILHENF 327 A ++ + +FIP WD KI ++ F Sbjct: 227 ---AQTIQSETMFIPPCWDTISKIQSVNHEF 254 >SPAPYUG7.06 |||DUF862|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 201 Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 89 LYLSVHDEDRDDHTRCNVWILDGDLYHKGLL----KFAVSAESLPETLVIFVADMSRP 142 +Y++V+D D W L +YH GL+ ++A A +P + +F A M RP Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVF-ATMPRP 59 >SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 469 Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 15/19 (78%) Query: 56 NILVFGEDGSGKTTLMTKL 74 N+LV GE GSGK+TL+ L Sbjct: 97 NVLVLGESGSGKSTLVNTL 115 >SPAC9E9.12c |||ABC transporter family |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1427 Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 51 LPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGR 84 +P + LV G GSGK+TL L G H G+ Sbjct: 604 IPRNQFTLVVGSTGSGKSTLAMALLGELHVISGK 637 >SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1396 Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 17/26 (65%) Query: 51 LPSGKNILVFGEDGSGKTTLMTKLQG 76 L G ++LV G +GSG +TL+ L G Sbjct: 99 LQPGSSLLVLGHEGSGGSTLLKALCG 124 >SPBC119.15 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 367 Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%) Query: 57 ILVFGEDGSGKTTLMTKLQGAEHGK 81 I+V G GSGKTT M +L H K Sbjct: 11 IIVVGMAGSGKTTFMQQLNAHLHSK 35 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 7/78 (8%) Query: 224 GIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLL 283 +P+L+ TK D +E + I RR+ A+L++ S N+ + Sbjct: 115 AVPILI-GTKYDHFMTFPREDQ------EEITKQARRYAKAMKASLVFCSTSHSINVQKI 167 Query: 284 YKYIVHKTYGFHFTTPAL 301 +K ++ K + T P + Sbjct: 168 FKIVLAKVFDLKCTIPEI 185 >SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 202 Score = 26.6 bits (57), Expect = 6.9, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%) Query: 42 EVSTRARSKLPSGK--NILVFGEDGSGKTTLMTKLQGAEHGKK 82 ++S+ SKL + K ++VFG G GK+TL+ +L +HG K Sbjct: 4 QLSSSVASKLVTLKLKPVVVFGPSGVGKSTLLKRLL-KDHGDK 45 >SPAC821.06 |spn2||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 331 Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 56 NILVFGEDGSGKTTLMTKLQGAE-HGKKGRGLEY 88 N++V G GSGK+TL+ L A KGR L+Y Sbjct: 34 NVMVVGPSGSGKSTLINTLFSAHLMDSKGR-LDY 66 >SPCC417.08 |tef3|EF-3|translation elongation factor 3 |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1047 Score = 26.2 bits (56), Expect = 9.8, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 17/26 (65%) Query: 46 RARSKLPSGKNILVFGEDGSGKTTLM 71 R R +L G+ + G +GSGK+TLM Sbjct: 452 RTRLRLKRGRRYGLCGPNGSGKSTLM 477 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Mm_NP_001013398.1_LIC2 (492 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 29 1.1 SPCC550.09 |||pex24 family|Schizosaccharomyces pombe|chr 3|||Man... 29 1.3 SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 2.0 SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manu... 28 2.1 SPCC737.03c |||hypothetical protein|Schizosaccharomyces pombe|ch... 28 2.2 SPAC9E9.12c |||ABC transporter family |Schizosaccharomyces pombe... 28 2.6 SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pomb... 28 3.9 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 4.0 SPBC119.15 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 4.8 SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 27 6.9 SPBC13A2.02 |||nucleoporin|Schizosaccharomyces pombe|chr 2|||Man... 27 6.9 SPAC821.06 |spn2||septin|Schizosaccharomyces pombe|chr 1|||Manua... 27 8.4 SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein|Schizo... 26 9.4 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 224 GIPVLVVCTKCDAMSVLEKEHDYRDEHLDFIQAHLRRFCLQYGAALIYTSVKEEKNLDLL 283 +P+L+ TK D +E + I RR+ A+L++ S N+ + Sbjct: 115 AVPILI-GTKYDHFMTFPREDQ------EEITKQARRYAKAMKASLVFCSTSHSINVQKI 167 Query: 284 YKYIVHKTYGFHFTIPAL 301 +K ++ K + TIP + Sbjct: 168 FKIVLAKVFDLKCTIPEI 185 >SPCC550.09 |||pex24 family|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 535 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 373 QPATPTRTSESPARGPSGSPRTQGRGGPASVPS--ASPGTSVKKPDPNIKNNAASEGVLA 430 QP T T +E + S SP +G PA V S A+ + ++ + N + N E + Sbjct: 140 QPKTTTLKTEVKEQQASQSPSVEGENEPAGVKSNEATKPSVTEEKEKNAEQNKRRERLSI 199 Query: 431 SFFNSLLSKK 440 S + L+KK Sbjct: 200 SHIVTELAKK 209 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 340 Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 11/91 (12%) Query: 244 HDYRDEHLDFIQAHLRRFCLQYGAALIYTSVKEE---KNLDLLYKYIV----HKTYGFHF 296 H D +FI LR L + I + + NL++L KY K FH Sbjct: 168 HTSVDNSQEFILQFLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFKPRDFH- 226 Query: 297 TIPALVVEKDAVFIPAGWDNEKKIAILHENF 327 A ++ + +FIP WD KI ++ F Sbjct: 227 ---AQTIQSETMFIPPCWDTISKIQSVNHEF 254 >SPAC4F10.11 |spn1||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 469 Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 15/19 (78%) Query: 56 NILVFGEDGSGKTTLMTKL 74 N+LV GE GSGK+TL+ L Sbjct: 97 NVLVLGESGSGKSTLVNTL 115 >SPCC737.03c |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 615 Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%) Query: 386 RGPSGSPRTQGRGGPASVPSASPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPG 445 R P SP T + A++P++SP + KP ++N+ S+ V N + + Sbjct: 417 RAPEESPMTFLQKKMAALPTSSPVRPMLKPTLQLQNSPLSKLVPQEVGNKVNDSIHTTSN 476 Query: 446 SPSAGGVQSTAKKSGQKTVLSNV 468 PS + + G + N+ Sbjct: 477 QPSKFSLNPSISLKGDNVIEKNL 499 >SPAC9E9.12c |||ABC transporter family |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1427 Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 51 LPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGR 84 +P + LV G GSGK+TL L G H G+ Sbjct: 604 IPRNQFTLVVGSTGSGKSTLAMALLGELHVISGK 637 >SPAPB24D3.09c |||ABC transporter family|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1396 Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 17/26 (65%) Query: 51 LPSGKNILVFGEDGSGKTTLMTKLQG 76 L G ++LV G +GSG +TL+ L G Sbjct: 99 LQPGSSLLVLGHEGSGGSTLLKALCG 124 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 3071 Score = 27.3 bits (59), Expect = 4.0, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 86 LEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLRETLVIFVA--DMSRPW 143 +E +YLS+H + ++ TR + L + L F + ++ RETL + ++SR Sbjct: 82 IEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESSSNPNISRKQ 141 Query: 144 TIMESL-QKWASVLREHIDKMKIPPEE-MRDLERKF 177 + +E L K ++ +I+++ + E+ + DLE+ + Sbjct: 142 SFIEYLIAKLTDNIQIYIERIHLRFEDNLSDLEKPY 177 >SPBC119.15 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 367 Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%) Query: 57 ILVFGEDGSGKTTLMTKLQGAEHGK 81 I+V G GSGKTT M +L H K Sbjct: 11 IIVVGMAGSGKTTFMQQLNAHLHSK 35 >SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 202 Score = 26.6 bits (57), Expect = 6.9, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%) Query: 42 EVSTRARSKLPSGK--NILVFGEDGSGKTTLMTKLQGAEHGKK 82 ++S+ SKL + K ++VFG G GK+TL+ +L +HG K Sbjct: 4 QLSSSVASKLVTLKLKPVVVFGPSGVGKSTLLKRLL-KDHGDK 45 >SPBC13A2.02 |||nucleoporin|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 803 Score = 26.6 bits (57), Expect = 6.9, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 317 EKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKKLAAEDEQVFLMKQQSLLAKQPAT 376 EK++ L KP DA + D +LAA ++ L+ QQSL K+ T Sbjct: 738 EKRVETLKTLLQRTKPRDAQTTLVASSS------DMRLAAIEQLQKLLAQQSLSIKELKT 791 Query: 377 PT 378 T Sbjct: 792 KT 793 >SPAC821.06 |spn2||septin|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 331 Score = 26.6 bits (57), Expect = 8.4, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 56 NILVFGEDGSGKTTLMTKLQGAE-HGKKGRGLEY 88 N++V G GSGK+TL+ L A KGR L+Y Sbjct: 34 NVMVVGPSGSGKSTLINTLFSAHLMDSKGR-LDY 66 >SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 832 Score = 26.2 bits (56), Expect = 9.4, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Query: 37 SSILSEVSTRARSKLPSGKNILVF--GEDGSGKTTLMTKLQG 76 SS+ E+S +S + G N+ +F G+ GSGKT M+ G Sbjct: 550 SSVFEEISQLIQSAI-DGYNVSIFAYGQTGSGKTYTMSSQDG 590 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Nem_Ce_NP_506683.2_X-BoX (370 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 27 3.3 SPBC405.04c |ypt7||GTPase|Schizosaccharomyces pombe|chr 2|||Manu... 27 5.3 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 74/182 (40%), Gaps = 42/182 (23%) Query: 52 GNRKSGKSSFMLNFLERKEDLKDSVGLEYTYARRTRG--NVKDIANLWELGGGATVTELL 109 G+ GK+S M+ +++ D + + L + +T N + ++W+LGG +L Sbjct: 17 GDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNML 76 Query: 110 SVPITMKNVEICSLILLLDMTNLDEMWITIEKTVDSVRRLVENLERQDINLQTRLAEKMR 169 P+ + +++ + D++ + T++S++ Sbjct: 77 --PMVCNDA--VAILFMFDLSR--------KSTLNSIK---------------------- 102 Query: 170 LRLEKYDDGSLKMCNPCPIPVTIVASKYDEFQNFESEKRRHLCQFLRFLAYSYGANLMMF 229 E Y + N +P+ ++ +KYD F F E + + + R A + A+L+ Sbjct: 103 ---EWYRQA--RGFNKTAVPI-LIGTKYDHFMTFPREDQEEITKQARRYAKAMKASLVFC 156 Query: 230 SS 231 S+ Sbjct: 157 ST 158 >SPBC405.04c |ypt7||GTPase|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 205 Score = 26.6 bits (57), Expect = 5.3, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 41 RRRHESHIIFAGNRKSGKSSFMLNFLERK--EDLKDSVGLEYTYARRTRGNVKDIANLWE 98 +++H +I G GK+S M ++ RK +D K ++G ++ + LW+ Sbjct: 4 KKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWD 63 Query: 99 LGG 101 G Sbjct: 64 TAG 66 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Art_Dm_NP_609289.1_CG3769 (368 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP31B10.06 |||C2 domain|Schizosaccharomyces pombe|chr 3|||Manu... 30 0.48 SPAPB2B4.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 29 1.1 SPBC1539.08 |||ADP-ribosylation factor |Schizosaccharomyces pomb... 28 1.8 SPBC651.01c ||SPBC725.18c|GTPase |Schizosaccharomyces pombe|chr ... 27 3.1 SPAC24C9.15c |spn5|mde9, meu28|septin |Schizosaccharomyces pombe... 27 4.0 SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 4.1 SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 27 4.6 SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 27 5.2 SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 8.2 >SPCP31B10.06 |||C2 domain|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1188 Score = 30.0 bits (66), Expect = 0.48, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 14/103 (13%) Query: 80 REEHATRPT-----LALEYSFGRRIGSGKSPQVMNVWELGSLDNAEQLLEVPMRTHGLQQ 134 R HA P A+ + F +++ + M VW + DN EQ + VP+ T Sbjct: 867 RSRHAVIPVNNRYRSAVVFEFRKQLQRKHNVFAM-VWLVDLEDNVEQNIRVPIFTSSKPA 925 Query: 135 LAVILMLDLSQPQR--------FWTDLECAYKGLRDTAQQMME 169 + M+D P + + + C ++GL D+ +Q+++ Sbjct: 926 HVLQNMIDFDHPDKESEFKIIGYLSTRICFHRGLDDSHEQLVD 968 >SPAPB2B4.07 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 239 Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%) Query: 301 VERIGATFGMEVPQLQLEKQKLKETTDPAKDPGFKELVIDEIRSQKNEELAGLMRDVLLR 360 V RI F L E + + DP K P + I S K+ EL + VL+R Sbjct: 117 VARIPRAFAERKDSLDDEDDNMISSNDPTKSPEEHDTTTKSIASLKDAELDSSLETVLIR 176 >SPBC1539.08 |||ADP-ribosylation factor |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 184 Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 56 KERTILVLGSKCVGKTTAINKFFDREEHATRPTLALEYSFGRRIGSGKSPQVMNVWELGS 115 KE IL+LG GKTT + K + T PT+ F + K+ + NVW++G Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVG----FNVETVTYKNIK-FNVWDVGG 74 Query: 116 LDNAEQL 122 D L Sbjct: 75 QDKIRPL 81 >SPBC651.01c ||SPBC725.18c|GTPase |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 642 Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 39 LAEEQQRLRQLEATTTPKERTILVLGSKCVGKTTAINK 76 L + +Q L +L A P RT+LV G VGK++ +NK Sbjct: 151 LEQVRQHLSRLPAID-PNTRTLLVCGYPNVGKSSFMNK 187 >SPAC24C9.15c |spn5|mde9, meu28|septin |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 464 Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 19/34 (55%) Query: 60 ILVLGSKCVGKTTAINKFFDREEHATRPTLALEY 93 ++V+G +GKTT +N F + RP +++ Sbjct: 121 LIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMDF 154 >SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1147 Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 44 QRLRQLEATTTPKERTILVLGSKCVGKTTAINKF-FDREEHATR 86 +RL+++E+ +E + L + V +T INKF F+R++ R Sbjct: 736 KRLQEIESLYRDRELLVTNLEDQLVDQTVTINKFAFERDQFRER 779 >SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 432 Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 312 VPQLQLEKQKLKETTDPAKDPGFKELVIDEIR------SQKNEELAGLMRDVLL 359 VP+ + KL+E D ++ F E V D IR S KN + M D ++ Sbjct: 266 VPKASMRPLKLREPEDDIENRQFSEYVADRIRKSFPDVSFKNLHVLSCMEDSVM 319 >SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transaminase |Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 696 Score = 26.6 bits (57), Expect = 5.2, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 20/41 (48%) Query: 203 PVIIVGGKYDVFSGFDPIIRKHTCRCLRSMAHLIGGALLFY 243 P+II K D GF I T CL+ + ++I LL Y Sbjct: 633 PIIITDKKLDNLEGFTIIKVPKTVDCLQGILNVIPFQLLSY 673 >SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit Sfc4|Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 1006 Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 10/78 (12%) Query: 123 LEVPMRTHGLQQLAVILMLDLSQPQRFWTDLECAYKGLRDTAQQMMEKVTPELREILEQR 182 LE+ H Q + IL++D S E L+D +E VT I EQR Sbjct: 477 LELKEYEHAQQCMEAILIVDNSNTNALIKLAEI--NELQDNRDAALEIVT----NIFEQR 530 Query: 183 ----TVERVGQQNKDSEK 196 +ER QN+D EK Sbjct: 531 RNINELEREQSQNEDHEK 548 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Dr_NP_956774.1 (358 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 31 0.19 SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate 3-phospha... 27 2.8 SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 27 3.0 SPAC23C11.15 |pst2||SIN3 family co-repressor|Schizosaccharomyces... 26 6.8 SPAC4C5.02c |ryh1|hos1|GTPase|Schizosaccharomyces pombe|chr 1|||... 26 7.1 SPBP4H10.06c |cut14|smc2|condensin subunit Cut14|Schizosaccharom... 26 8.3 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 31.2 bits (69), Expect = 0.19, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Query: 185 VPLLIVGSKFDIFQDFDSEKRKVICKTLRFLAHFYGASLIF 225 VP+LI G+K+D F F E ++ I K R A ASL+F Sbjct: 116 VPILI-GTKYDHFMTFPREDQEEITKQARRYAKAMKASLVF 155 >SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 534 Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Query: 241 INQLAFGTERPKSISTDPSKPLAIPAGSDSLSQIG 275 I QL G R K +S +PSKPL+ GS+ ++Q G Sbjct: 249 IQQLLQGN-REKFLSRNPSKPLSSVYGSELINQAG 282 >SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 339 Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 39 QRTVFFMGSKAGGKTTILLRFLERDETAKPTL 70 +R F G+ AGG +L + RDE KP L Sbjct: 163 KRGFFLGGASAGGNFVSVLSHIARDEKIKPEL 194 >SPAC23C11.15 |pst2||SIN3 family co-repressor|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 1075 Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 295 LWKKVFEKVFPHESTRERKELKDPVKDPQFSEPLIDSIRAQKDQELDQYKREQAKSWKSL 354 ++KK + V+ E E K + P + PL+ S +K++E KR W+S+ Sbjct: 448 IYKKTIKLVYTSEHAEEM--FKALERMPCLTLPLVISRLEEKNEEWKSVKRSLQPGWRSI 505 >SPAC4C5.02c |ryh1|hos1|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 201 Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 2/33 (6%) Query: 44 FMGSKAGGKTTILLRFL--ERDETAKPTLALEY 74 F+G ++ GKT+++ RF+ + D T + T+ +++ Sbjct: 16 FLGEQSVGKTSLITRFMYDQFDNTYQATIGIDF 48 >SPBP4H10.06c |cut14|smc2|condensin subunit Cut14|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1172 Score = 25.8 bits (55), Expect = 8.3, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Query: 313 KELKDPVKDPQFSEPLIDSIRAQKDQELDQYKREQAKSWK 352 ++ KD VKD + P +D + Q DQ + + +R+ + WK Sbjct: 747 QQYKDDVKDLKQRLPELDRLILQSDQAIKKIERDM-QEWK 785 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Hs_NP_057092.2_Lic3 (351 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 35 0.012 SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 29 1.1 SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex|Schizosaccharomyce... 27 2.7 SPBC21D10.09c |||zinc finger protein|Schizosaccharomyces pombe|c... 27 4.4 SPAC3C7.12 |tip1|noc1|CLIP170 family plus end tracking protein T... 27 5.4 SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 26 6.6 SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 26 6.8 SPBC17G9.04c |nup85||nucleoporin|Schizosaccharomyces pombe|chr 2... 26 6.9 SPBC651.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 9.1 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 35.4 bits (80), Expect = 0.012, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 182 VIIGSKYDVFQDFESEKRKVICKTLRFVAHYYGASLMFTSKSEAL 226 ++IG+KYD F F E ++ I K R A ASL+F S S ++ Sbjct: 118 ILIGTKYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSI 162 >SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity factor complex subunit Ysh1|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 775 Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%) Query: 52 LDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSL 93 D D P P+++LE+T + N +D+ F LG G + Sbjct: 7 FDEDAPVDPSVSLEFTIFYKGLLSNQCQDLLEFINLGAGNEV 48 >SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 273 Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 3/37 (8%) Query: 304 TLKDIKDPARDPQYAENEVDEMRIQKDLELEQYKRSS 340 T+++I DP DPQ+ ENE E+ Q +LE +Q R++ Sbjct: 53 TIQEIGDP--DPQFYENEAFELANQ-ELEGDQCSRNN 86 >SPBC21D10.09c |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1610 Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 122 DLWPTMENLLQATKSHVDKVIMKLGKTNAKA 152 D + NLL+ + HVD V+ KLG +++K+ Sbjct: 996 DFLIVVSNLLEMDEKHVDVVLGKLGLSSSKS 1026 >SPAC3C7.12 |tip1|noc1|CLIP170 family plus end tracking protein Tip1|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 461 Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 148 TNAKAVSEMRQKIWNNMPKDHPD-HELIDPFPVPLVIIGSKYDVFQDFESEKRKVICK 204 TNA S R K N++P++HP + ++ + + + ++ K + Q EK I K Sbjct: 299 TNASFESPKRGKGSNDLPENHPQRRQTLEFYEIEIEVLREKVEKLQALSDEKDFYISK 356 >SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 319 Score = 26.2 bits (56), Expect = 6.6, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 283 HSPMELWKKVYEKLFPPKSINTLKDIKDPARDPQYAENEVDEM-RIQKDLELEQYKRS 339 H P+ +++ +L +N L DIK P D VD M R+ DL+ + K S Sbjct: 120 HEPLPTYEQFLHELTKHPGVNLLVDIK-PVNDLLIIPRMVDAMLRVNSDLDFWKDKVS 176 >SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 539 Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 193 DFESEKRKVICKTLRFVAHYYGASLMFTSKSEALLLKIRGVI 234 DF S+ +I + LR + H Y L T K EAL K GVI Sbjct: 25 DFGSQYSHLIARRLREI-HVYAELLPCTQKIEALPFKPIGVI 65 >SPBC17G9.04c |nup85||nucleoporin|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 675 Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 27 AEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHFWE 86 +E+ + FV + NG K I+L C E AL + YG P+DI+ ++ Sbjct: 299 SEVLDDFVVLLDILNGNKEVIMLSCAHWQEYFS---ALAFLYG--PLDCKNPEDISLLYQ 353 Query: 87 LGGG 90 L G Sbjct: 354 LATG 357 >SPBC651.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 388 Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 32/128 (25%) Query: 41 NGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIP 100 N II C++ D PK LEY LL SIP Sbjct: 2 NSALKAIIELCIEEDLLPKSLDVLEY--------------------------LLSTTSIP 35 Query: 101 ITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKI 160 I +R +LV + +PT N+ ++ + +V+ K N A S Sbjct: 36 IPACYIRMCITLLV------HPEYPTSSNIQESCNWILQQVVENRSKINFDAWSFENDLS 89 Query: 161 WNNMPKDH 168 N+MPK++ Sbjct: 90 DNDMPKEN 97 BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= Ver_Mm_NP_758460.1_Lic3 (351 letters) Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pep. fa 4991 sequences; 2,360,646 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1||... 38 0.002 SPBC21D10.09c |||zinc finger protein|Schizosaccharomyces pombe|c... 30 0.41 SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 28 1.7 SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.1 SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 4.7 SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 26 9.6 >SPAC1565.06c |spg1|sid3|GTPase|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 198 Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 43/193 (22%) Query: 34 VFFIGSKNGGKTTIILRCLDRDESAKPTLALEYTYGRKTKGHNTPKDIAHFWELGGGTSL 93 V IG + GKT++++ + + T L + KT + W+LGG Sbjct: 13 VGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREF 72 Query: 94 LDLISIPITVDTLRTFSIVLVLDLSKPNDLWSTMENLLQATKSHVDKVIMKLGKTSSKAS 153 ++++ P+ + +I+ + DLS+ + L S E QA KT+ Sbjct: 73 VNML--PMVCND--AVAILFMFDLSRKSTLNSIKEWYRQARG---------FNKTA---- 115 Query: 154 AEMRQRMWSVVQKDHPDRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLRFVAHYY 213 +P ++IG+KYD F F E ++ I K R A Sbjct: 116 -------------------------VP-ILIGTKYDHFMTFPREDQEEITKQARRYAKAM 149 Query: 214 GASLMFTSKSEAL 226 ASL+F S S ++ Sbjct: 150 KASLVFCSTSHSI 162 >SPBC21D10.09c |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1610 Score = 30.0 bits (66), Expect = 0.41, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 102 TVDTLRTFSIVLVLDLSKPNDLWSTMENLLQATKSHVDKVIMKLGKTSSKA 152 + + +FSI L+ D + NLL+ + HVD V+ KLG +SSK+ Sbjct: 979 SAENTTSFSIFAAQGLT---DFLIVVSNLLEMDEKHVDVVLGKLGLSSSKS 1026 >SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 1154 Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats. Identities = 12/20 (60%), Positives = 13/20 (65%) Query: 329 KDQELEHYKRSSSKTWKQIE 348 KDQE KR SK W+QIE Sbjct: 639 KDQEWRRSKREWSKIWRQIE 658 >SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual [Schizosaccharomyces pombe] Length = 867 Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%) Query: 170 DRELIDPFPIPLV----IIGSKYDIFQDFDPEKRK--VICKTLR 207 D++L+ FP LV I+G D+FQ DP R+ ++ + LR Sbjct: 646 DQKLLGTFPSQLVRLSLIVGHISDVFQSPDPTDRQSPIVTQQLR 689 >SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity factor complex subunit Ysh1|Schizosaccharomyces pombe|chr 1|||Manual [Schizosaccharomyces pombe] Length = 775 Score = 26.6 bits (57), Expect = 4.7, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%) Query: 52 LDRDESAKPTLALEYTYGRKTKGHNTPKDIAHFWELGGGTSL 93 D D P+++LE+T K N +D+ F LG G + Sbjct: 7 FDEDAPVDPSVSLEFTIFYKGLLSNQCQDLLEFINLGAGNEV 48 >SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit Cct4|Schizosaccharomyces pombe|chr 2|||Manual [Schizosaccharomyces pombe] Length = 527 Score = 25.8 bits (55), Expect = 9.6, Method: Composition-based stats. Identities = 13/20 (65%), Positives = 13/20 (65%) Query: 30 GEKSVFFIGSKNGGKTTIIL 49 GEK V F G KN GKT IL Sbjct: 358 GEKIVKFSGVKNAGKTVSIL 377 Database: /data/curated/sequences/fasta/Schizosaccharomyces_pombe_pe p.fa Posted date: Jan 8, 2008 4:22 PM Number of letters in database: 2,360,646 Number of sequences in database: 4991 Lambda K H 0.322 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4991 Number of Hits to DB: 39,359,733 Number of extensions: 1736287 Number of successful extensions: 4964 Number of sequences better than 10.0: 217 Number of HSP's gapped: 4952 Number of HSP's successfully gapped: 315 Length of database: 2,360,646 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)