Query         Ver_Hs_NP_057225.1_DNCLI1 
Command       /cluster/toolkit/production/bioprogs/hhpred/hhsearch -cal -cpu 4 -v 1 -i /cluster/toolkit/production/tmp/production/96125/Hs_NP_057225.hhm -d /cluster/toolkit/production/databases/hhpred/new_dbs/pdb70_3Jan08/db/pdb.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/scop70_1.72pre/db/scop.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/scop70_1.71/db/scop.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/pfamA_22.0/db/pfamA.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/smart_18Apr07/db/smart.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/pfam_18Apr07/db//pfam.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/KOG_18Apr07/db/KOG.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/COG_18Apr07/db/COG.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/cd_18Apr07/db/cd.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/panther_13Dec06/db/panther.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/tigrfam_13Dec06/db/tigrfam.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/pirsf_13Dec06/db/pirsf.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/supfam_13Dec06/db/supfam.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/CATH_13Dec06/db/CATH.hmm -o /cluster/toolkit/production/tmp/production/96125/Hs_NP_057225.hhr -p 20 -P 20 -Z 100 -B 100 -seq 1 -aliw 80 -local -ssm 2 -norealign -sc 1 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF05783 DLIC:  Dynein light in 100.0       0       0 1340.1  39.8  497   21-517     1-525 (525)
  2 pfam05783 DLIC Dynein light in 100.0       0       0 1336.5  40.5  474   21-517     1-475 (475)
  3 KOG3905 Dynein light intermedi 100.0       0       0 1292.0  35.6  473   14-522     1-473 (473)
  4 PTHR12688 DYNEIN LIGHT INTERME 100.0       0       0  964.5  25.4  404   98-521     1-405 (415)
  5 PTHR13236 DYNEIN 2 LIGHT INTER  99.9 8.5E-27 8.9E-32  207.3   8.1  264   65-334    38-305 (397)
  6 KOG3929 Uncharacterized conser  99.9 1.3E-23 1.4E-28  185.4  10.9  246   39-335    29-282 (363)
  7 cd04128 Spg1 Spg1p.  Spg1p (se  99.1 2.9E-09   3E-14   86.5  11.3  177   70-321     3-182 (182)
  8 2q3h_A RAS homolog gene family  99.0 1.5E-09 1.5E-14   88.5   6.3  185   55-305     6-194 (201)
  9 1oix_A RAS-related protein RAB  99.0   5E-08 5.2E-13   78.0  12.0  159   70-305    32-191 (191)
 10 e2gjsa1 c.37.1.8 (A:91-258) Ra  98.9 1.4E-08 1.4E-13   81.8   8.8  159   70-305     4-162 (168)
 11 d3raba_ c.37.1.8 (A:) Rab3a {R  98.9 1.6E-08 1.7E-13   81.3   8.9  157   70-305     8-167 (169)
 12 2oil_A CATX-8, RAS-related pro  98.9 6.9E-09 7.2E-14   83.9   6.8  170   59-305    10-187 (193)
 13 e1z2aa_ c.37.1.8 (A:) Rab23 {M  98.9 8.2E-09 8.5E-14   83.4   7.2  157   69-305     4-163 (164)
 14 2hxs_A RAB-26, RAS-related pro  98.9   7E-08 7.3E-13   77.0  11.2  167   69-310     8-177 (178)
 15 e2erxa1 c.37.1.8 (A:6-176) di-  98.9 2.9E-08 3.1E-13   79.5   9.2  161   69-304     4-164 (171)
 16 2fg5_A RAB-22B, RAS-related pr  98.9 2.1E-08 2.2E-13   80.5   8.4  173   50-304    11-184 (192)
 17 d1r2qa_ c.37.1.8 (A:) Rab5a {H  98.9 2.3E-08 2.4E-13   80.3   8.4  159   70-305     9-168 (170)
 18 e2a5ja1 c.37.1.8 (A:9-181) Rab  98.9 4.2E-08 4.3E-13   78.5   9.6  159   70-305     6-165 (173)
 19 e1x3sa1 c.37.1.8 (A:2-178) Rab  98.9   3E-08 3.2E-13   79.5   8.9  167   63-309     4-173 (177)
 20 1ek0_A GTP-binding protein YPT  98.9 6.3E-08 6.6E-13   77.3  10.5  160   69-304     5-167 (170)
 21 cd00154 Rab Rab family.  Rab G  98.9 2.5E-08 2.6E-13   80.0   8.4  152   70-300     3-157 (159)
 22 2p5s_A RAS and EF-hand domain   98.9 5.8E-09 6.1E-14   84.4   5.1  193   40-304     2-195 (199)
 23 cd01868 Rab11_like Rab11-like.  98.9 2.9E-08   3E-13   79.6   8.6  159   70-305     6-165 (165)
 24 e1xtqa1 c.37.1.8 (A:3-169) GTP  98.9 3.7E-08 3.9E-13   78.8   9.0  159   70-304     7-165 (167)
 25 cd00877 Ran Ran (Ras-related n  98.9 8.8E-08 9.2E-13   76.3  10.6  157   70-308     3-162 (166)
 26 d1wmsa_ c.37.1.8 (A:) Rab9a {H  98.9 1.2E-07 1.3E-12   75.3  11.2  160   70-305     9-172 (174)
 27 d1r2qa_ c.37.1.8 (A:) Rab5a {H  98.9 3.1E-08 3.3E-13   79.4   8.1  160   69-305     8-168 (170)
 28 1xtq_A GTP-binding protein RHE  98.9 1.6E-07 1.7E-12   74.5  11.7  157   70-305     9-168 (177)
 29 cd04122 Rab14 Rab14 subfamily.  98.9 4.9E-08 5.1E-13   78.0   9.0  159   70-305     5-164 (166)
 30 d1g16a_ c.37.1.8 (A:) Rab-rela  98.8 4.7E-08 4.9E-13   78.2   8.6  159   69-305     4-163 (166)
 31 cd01866 Rab2 Rab2 subfamily.    98.8 1.6E-07 1.7E-12   74.4  11.3  157   70-305     7-166 (168)
 32 e1z0fa_ c.37.1.8 (A:) Rab14 {H  98.8 8.4E-08 8.8E-13   76.4   9.7  159   70-305     8-167 (167)
 33 1r2q_A RAS-related protein RAB  98.8   5E-08 5.2E-13   78.0   8.4  158   70-304     9-167 (170)
 34 2gf9_A RAS-related protein RAB  98.8 2.9E-07   3E-12   72.7  12.2  170   59-305    10-184 (189)
 35 pfam00071 Ras Ras family. Incl  98.8 7.6E-08 7.9E-13   76.7   9.1  159   70-305     2-161 (162)
 36 1x3s_A RAS-related protein RAB  98.8 3.3E-08 3.4E-13   79.2   7.0  167   64-308    13-180 (195)
 37 d1oiva_ c.37.1.8 (A:) Rab11a {  98.8 1.2E-07 1.2E-12   75.4   9.8  159   70-305     9-168 (168)
 38 e2atxa1 c.37.1.8 (A:9-193) Rho  98.8 8.6E-08   9E-13   76.3   9.1  171   69-305    11-183 (185)
 39 cd04119 RJL RJL (RabJ-Like) su  98.8 1.7E-07 1.8E-12   74.3  10.4  162   70-306     3-168 (168)
 40 e1z08a1 c.37.1.8 (A:17-183) Ra  98.8   5E-08 5.2E-13   78.0   7.6  156   70-304     6-164 (167)
 41 e1x1ra1 c.37.1.8 (A:10-178) Ra  98.8 5.2E-08 5.5E-13   77.8   7.5  164   64-304     2-166 (169)
 42 cd04106 Rab23_lke Rab23-like s  98.8 6.2E-08 6.5E-13   77.3   7.9  156   70-303     3-161 (162)
 43 cd00876 Ras Ras family.  The R  98.8 6.3E-08 6.6E-13   77.3   7.8  159   70-304     2-160 (160)
 44 e2f7sa1 c.37.1.8 (A:5-190) Rab  98.8 1.3E-07 1.4E-12   75.1   9.3  161   69-305     7-178 (186)
 45 2atx_A Small GTP binding prote  98.8 4.8E-08   5E-13   78.1   6.9  180   59-304     5-191 (194)
 46 cd04101 RabL4 RabL4 (Rab-like4  98.8 9.9E-08   1E-12   75.9   8.4  157   70-305     3-164 (164)
 47 cd04108 Rab36_Rab34 Rab34/Rab3  98.8 1.1E-07 1.2E-12   75.6   8.5  163   70-307     3-167 (170)
 48 2j1l_A RHO-related GTP-binding  98.8 3.7E-08 3.9E-13   78.8   6.1  188   50-305    17-208 (214)
 49 cd01863 Rab18 Rab18 subfamily.  98.8 1.7E-07 1.8E-12   74.3   9.4  156   70-304     3-161 (161)
 50 cd04109 Rab28 Rab28 subfamily.  98.8 1.7E-07 1.8E-12   74.3   9.3  170   70-314     3-175 (215)
 51 1z08_A RAS-related protein RAB  98.8 3.4E-07 3.5E-12   72.2  10.9  159   70-305     9-168 (170)
 52 2dpx_A GTP-binding protein RAD  98.8 3.2E-08 3.4E-13   79.2   5.7  159   70-305    10-168 (174)
 53 1m7b_A RND3/RHOE small GTP-bin  98.8 1.8E-07 1.9E-12   74.1   9.3  171   70-306    10-183 (184)
 54 1vg8_A RAS-related protein RAB  98.8 2.4E-07 2.5E-12   73.3   9.9  183   69-324    10-193 (207)
 55 cd01865 Rab3 Rab3 subfamily.    98.8 3.3E-07 3.5E-12   72.3  10.6  156   70-304     4-162 (165)
 56 cd04116 Rab9 Rab9 subfamily.    98.8 2.3E-07 2.4E-12   73.4   9.7  161   70-304     8-170 (170)
 57 2f9l_A RAB11B, member RAS onco  98.8 1.2E-07 1.3E-12   75.3   8.3  157   70-305     8-167 (199)
 58 2bov_A RAla, RAS-related prote  98.8 8.3E-08 8.7E-13   76.4   7.5  157   70-305    17-176 (206)
 59 cd04123 Rab21 Rab21 subfamily.  98.8 1.8E-07 1.9E-12   74.2   9.1  156   70-304     3-161 (162)
 60 1wms_A RAB-9, RAB9, RAS-relate  98.8 7.8E-08 8.2E-13   76.6   7.2  162   70-305    10-173 (177)
 61 1z0j_A RAB-22, RAS-related pro  98.7 1.3E-07 1.4E-12   75.0   8.3  159   69-304     8-167 (170)
 62 1yzq_A Small GTP binding prote  98.7 1.8E-07 1.9E-12   74.1   8.8  161   70-307     9-170 (170)
 63 cd04112 Rab26 Rab26 subfamily.  98.7 1.7E-07 1.8E-12   74.3   8.7  156   70-304     3-162 (191)
 64 2g6b_A RAS-related protein RAB  98.7   2E-07   2E-12   73.9   8.9  164   70-312    13-180 (180)
 65 1x1r_A RAS-related protein M-R  98.7 7.9E-08 8.2E-13   76.6   6.7  166   60-305     2-176 (178)
 66 2fn4_A P23, RAS-related protei  98.7 1.7E-07 1.8E-12   74.3   8.3  160   70-305    12-171 (181)
 67 d1ukvy_ c.37.1.8 (Y:) GTPase Y  98.7 1.5E-07 1.5E-12   74.7   8.0  156   70-304     9-167 (204)
 68 d1d5ca_ c.37.1.8 (A:) Rab6 {Ma  98.7 8.7E-08 9.1E-13   76.3   6.8  158   70-304     4-162 (162)
 69 cd04115 Rab33B_Rab33A Rab33B/R  98.7 1.9E-07   2E-12   74.0   8.5  157   70-304     5-168 (170)
 70 d1ek0a_ c.37.1.8 (A:) Ypt51 {B  98.7 4.5E-07 4.7E-12   71.4  10.2  160   69-304     5-167 (170)
 71 cd04113 Rab4 Rab4 subfamily.    98.7 1.9E-07   2E-12   74.0   8.1  158   70-304     3-161 (161)
 72 1zbd_A Rabphilin-3A; G protein  98.7 8.9E-07 9.3E-12   69.3  11.5  157   70-305    11-170 (203)
 73 e2ew1a1 c.37.1.8 (A:4-174) Rab  98.7 3.5E-07 3.6E-12   72.2   9.3  158   70-304     8-166 (171)
 74 2g3y_A GTP-binding protein GEM  98.7 9.1E-08 9.5E-13   76.2   6.2  181   46-305    16-202 (211)
 75 d1kao__ c.37.1.8 (-) Rap2a {Hu  98.7 9.7E-07   1E-11   69.1  11.3  160   69-304     5-164 (167)
 76 e2g6ba1 c.37.1.8 (A:58-227) Ra  98.7 2.4E-07 2.5E-12   73.3   8.1  158   70-304     9-168 (170)
 77 2bcg_Y Protein YP2, GTP-bindin  98.7 2.3E-07 2.4E-12   73.4   8.0  159   70-305    11-170 (206)
 78 cd04110 Rab35 Rab35 subfamily.  98.7 3.9E-07 4.1E-12   71.8   9.1  156   70-305     9-167 (199)
 79 cd04139 RalA_RalB RalA/RalB su  98.7 3.6E-07 3.8E-12   72.0   8.9  157   70-305     3-162 (164)
 80 cd01861 Rab6 Rab6 subfamily.    98.7 2.6E-07 2.8E-12   73.0   8.0  156   70-304     3-161 (161)
 81 1z2a_A RAS-related protein RAB  98.7   3E-07 3.2E-12   72.5   8.2  156   70-305     8-166 (168)
 82 e1z0ja1 c.37.1.8 (A:2-168) Rab  98.7 3.6E-07 3.8E-12   72.0   8.6  159   69-304     6-165 (167)
 83 d1m7ba_ c.37.1.8 (A:) RhoE (RN  98.7 2.9E-07 3.1E-12   72.6   8.1  166   70-301     5-173 (179)
 84 2rex_B RHO-related GTP-binding  98.7 1.8E-07 1.9E-12   74.2   7.0  180   69-314    12-194 (197)
 85 2a5j_A RAS-related protein RAB  98.7 2.8E-07 2.9E-12   72.8   7.9  173   54-305     5-183 (191)
 86 cd04120 Rab12 Rab12 subfamily.  98.7 4.2E-07 4.4E-12   71.6   8.8  157   70-305     3-163 (202)
 87 e2g3ya1 c.37.1.8 (A:73-244) GT  98.7 4.1E-07 4.2E-12   71.7   8.6  162   70-304     6-167 (172)
 88 1u8z_A RAS-related protein RAL  98.7 2.8E-07 2.9E-12   72.8   7.8  161   64-304     2-165 (168)
 89 d1g16a_ c.37.1.8 (A:) Rab-rela  98.7 1.2E-07 1.3E-12   75.3   5.8  159   69-305     4-163 (166)
 90 1gwn_A RHO-related GTP-binding  98.7 4.2E-07 4.4E-12   71.6   8.6  188   50-304    12-202 (205)
 91 cd04127 Rab27A Rab27a subfamil  98.7 4.2E-07 4.4E-12   71.6   8.6  160   70-305     7-177 (180)
 92 cd04140 ARHI_like ARHI subfami  98.7 7.4E-07 7.8E-12   69.9   9.8  159   70-304     4-164 (165)
 93 e2bcgy_ c.37.1.8 (Y:) GTPase Y  98.7 4.6E-07 4.8E-12   71.3   8.7  159   70-305     9-168 (194)
 94 cd04114 Rab30 Rab30 subfamily.  98.7 4.6E-07 4.9E-12   71.3   8.7  158   70-304    10-168 (169)
 95 e1z06a1 c.37.1.8 (A:32-196) Ra  98.7 3.4E-07 3.6E-12   72.2   8.1  155   70-300     5-164 (165)
 96 cd01864 Rab19 Rab19 subfamily.  98.7 3.7E-07 3.9E-12   72.0   8.2  156   70-304     6-165 (165)
 97 2ce2_X GTPase HRAS; guanine nu  98.7   2E-07 2.1E-12   73.8   6.8  160   69-305     5-164 (166)
 98 cd04124 RabL2 RabL2 subfamily.  98.7 8.8E-07 9.2E-12   69.4  10.0  154   70-304     3-157 (161)
 99 cd04125 RabA_like RabA-like su  98.6 5.7E-07 5.9E-12   70.7   9.0  157   70-305     3-162 (188)
100 2gf0_A GTP-binding protein DI-  98.6 1.1E-07 1.2E-12   75.5   5.4  157   70-305    11-170 (199)

No 1  
>PF05783 DLIC:  Dynein light intermediate chain (DLIC);  InterPro: IPR008467 This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo .; GO: 0003774 motor activity
Probab=100.00  E-value=0  Score=1340.12  Aligned_columns=497  Identities=72%

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC-
Q ss_conf             4567653211046888666654533679999998864144542578765889736997678999997420146888652-
Q Ver_Hs_NP_0572   21 YTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRGL-   99 (523)
Q Consensus        21 ~~~~~~~~~~~~g~~~~~~~~~~~~~nlWssiL~~v~t~~~~klp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~gL-   99 (523)
                      ..++...++.+.++..+..++++|++||||+||+||+|++|+|||+||||||||++++||||||++||++|+++||+|| 
T Consensus         1 ~~~~~~~n~~~~~~~~~~~~~~~e~~~lWs~iL~evst~~~sklp~gk~vlVLGd~~sGKttLlakLqg~e~~~Kg~gLl   80 (525)
T PF05783_consen    1 LESDTTANAVTSSATAALKSEEEEKENLWSSILSEVSTRSNSKLPSGKNVLVLGDNGSGKTTLLAKLQGVEETKKGRGLL   80 (525)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             97775455444434344453023543388999887541245105788616886178876789999872344344676411


Q ss_pred             EEEEEECCCHHCC-----------------HHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1456404500004-----------------32524636865862432455567870026664556554010136899999
Q Ver_Hs_NP_0572  100 EYLYLNVHDEDRD-----------------DQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSL  162 (523)
Q Consensus       100 eY~Yl~V~DeDrd-----------------d~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL  162 (523)
                      ||+|+||+|+|||                 |++||+||||||++||++||||||+++||++|||||++||++||+||++|
T Consensus        81 eY~yl~v~dd~RD~~~~~~~~~~~~~~~p~d~tR~nVWiLdGd~~h~~LLKfAl~~~s~~~tlvilt~dms~PW~~mesL  160 (525)
T PF05783_consen   81 EYLYLNVHDDDRDASYAYQLGTAGANLNPSDLTRLNVWILDGDAYHKGLLKFALNAESIADTLVILTLDMSRPWNLMESL  160 (525)
T ss_pred             CEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHH
T ss_conf             13465311010121210000000011233310115515761752555554443685440345888875310103589999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99999999999732789889999999999999985045556666553445676667765344788876230058832799
Q Ver_Hs_NP_0572  163 QKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLV  242 (523)
Q Consensus       163 ~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivV  242 (523)
                      ++|+.||++||++|++++|++++|+++++++||+|+||+++++++||||++.....+|++++|||++|+||+||||||||
T Consensus       161 qkW~~Vl~ehi~kLki~~E~~~~meqrl~k~~QeY~EP~~~~~~sPqrr~~~~~s~~de~v~LPL~~g~Lt~NLGipi~V  240 (525)
T PF05783_consen  161 QKWASVLREHIDKLKIPPEELKEMEQRLVKKFQEYVEPGEDLDGSPQRRTTVVSSSDDESVLLPLGEGTLTENLGIPIIV  240 (525)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             99999999999605789899999999999987643161336888841056778754433232668866411478951799


Q ss_pred             EEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf             85074125555420577478999999999999997187688832663678999999999876065556556411364025
Q Ver_Hs_NP_0572  243 VCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVF  322 (523)
Q Consensus       243 VctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLygfpf~~~a~ViDrD~If  322 (523)
                      ||||||+|++|||||||+||||||||||||+|||+|||+|||||+|+++||+|||+||+||||||||+++|+|||||+||
T Consensus       241 Vctk~D~i~~LeKe~d~kdE~fDfIqq~lR~fcL~yGAsLiYTSvKe~kN~dllykYi~HrlYgf~f~~~a~vvekdavf  320 (525)
T PF05783_consen  241 VCTKSDAISVLEKEHDYKDEHFDFIQQHLRRFCLQYGASLIYTSVKEEKNIDLLYKYIVHRLYGFPFKTPAQVVEKDAVF  320 (525)
T ss_pred             EEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCEE
T ss_conf             85077513444420475277899999999999976074046740455210899999998876077557743034100012


Q ss_pred             ECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH--HCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             26888837888876527611378753023678886512020--0211124078899999999862687788887666778
Q Ver_Hs_NP_0572  323 IPAGWDNDKKIGILHENFQTLKAEDNFEDIITKPPVRKFVH--EKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDASPR  400 (523)
Q Consensus       323 IPaGWDs~~KI~IL~Enf~~~~~~d~y~~ii~kPp~rk~~~--~~ei~aedeQ~FL~klq~~l~~~p~t~a~~p~~~~~~  400 (523)
                      |||||||++||.||||||++||++|+|||||+|||+||.+|  ++||+|||||+||||||++|++||++++++|.++++|
T Consensus       321 iPaGwDn~kKI~Il~En~~~~K~dd~~ed~i~kpp~rk~v~~re~ei~aEddQ~FL~k~qs~La~q~~t~~~~p~~s~~r  400 (525)
T PF05783_consen  321 IPAGWDNLKKISILHENFQTVKPDDPYEDIITKPPVRKLVHNREKEIQAEDDQVFLMKQQSLLAKQPPTAAGRPLDSSSR  400 (525)
T ss_pred             ECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             03676511333443203344666543233212686330011224554112068999999998614787777765555677


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCC------CCCCCCC
Q ss_conf             877777688888777777556555665556888888851100578888888742-688887666666------6666666
Q Ver_Hs_NP_0572  401 VPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSK-KTGSPGGPGVSG------GSPAGGA  473 (523)
Q Consensus       401 ~~~~s~~~~~~~~~~~~~~~~p~~~~~~k~d~~~~~~~~~egvLanFFnsLl~K-kt~sp~~~~~s~------~~~~~~~  473 (523)
                      +++|+|||++|++++++++++||+++.||+|||+++++++|||||||||||||| ||||||+|+..|      +||++++
T Consensus       401 ~~~gsprt~~rs~~~~~~~~sP~~~~~kK~dPn~~~~~~~EgvLANFFnSLLsKdKtgsPg~~~~gg~~~~~~~S~~~g~  480 (525)
T PF05783_consen  401 APSGSPRTPNRSGPSNVAQVSPIMAGTKKPDPNIKATASSEGVLANFFNSLLSKDKTGSPGSPGTGGAGSPAKKSGGGGG  480 (525)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78888777876566666655655555667786545675320267888887652024678888776653222345555556


Q ss_pred             CCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             77766666544257743134-589999986337653356778876
Q Ver_Hs_NP_0572  474 GGGSSGLPPSTKKSGQKPVL-DVHAELDRITRKPVTVSPTTPTSP  517 (523)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~-d~~~eldr~~~~~~~~~~~~~~~~  517 (523)
                      ++++.+++.++++++|++++ |||+|||||+|+++++.+++++.+
T Consensus       481 ~~~~~~~~~s~~~~~q~~~~td~qaELDRl~r~~~~~~~~~~t~~  525 (525)
T PF05783_consen  481 AGSGSSLASSAKTSGQKPVLTDVQAELDRLSRKPDSVVPTSPTES  525 (525)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             666677765544555310278999999986315342357777899


No 2  
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=100.00  E-value=0  Score=1336.53  Aligned_columns=474  Identities=73%

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             45676532110468886666545336799999988641445425787658897369976789999974201468886521
Q Ver_Hs_NP_0572   21 YTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLE  100 (523)
Q Consensus        21 ~~~~~~~~~~~~g~~~~~~~~~~~~~nlWssiL~~v~t~~~~klp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLe  100 (523)
                      +.+|+..|+++++-.+...+++++|||||||||++|+|++|+|||+||||||||++++|||||+++||++++++||+|||
T Consensus         1 ~~~~~~~n~~~~~~~~~~~~~~~~k~nLWsSIL~~V~t~~r~Klp~~KniLVLG~~~~GKttLl~~Lqg~~~~kkg~aL~   80 (475)
T pfam05783         1 LESGDTANALASVFTGKLYSSTEEGQNLWSEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISRLQGSERTKKGRGLE   80 (475)
T ss_pred             CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             98762012333320267777410122478988865302533347776647885089975578999750577667863101


Q ss_pred             EEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             45640450000432524636865862432455567870026664556554010136899999999999999997327898
Q Ver_Hs_NP_0572  101 YLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPP  180 (523)
Q Consensus       101 Y~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~  180 (523)
                      |+|+||+|+||||++|||||||||++||++||||||+++||+|||||||||||+||+||+||++|++|||+|+++|++++
T Consensus        81 Y~YldV~DeD~Dd~~R~~vwiLd~~~~~~~LLK~aL~~~si~~TlViI~lDms~PW~~i~qL~~Wi~VLrehi~~L~i~~  160 (475)
T pfam05783        81 YLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPP  160 (475)
T ss_pred             EEEECCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             34632322030322154247608751522232125772314220120012120134899999999999999997138998


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCC
Q ss_conf             89999999999999985045556666553445676667765344788876230058832799850741255554205774
Q Ver_Hs_NP_0572  181 EEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYR  260 (523)
Q Consensus       181 ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~  260 (523)
                      |++++|++++|++||+|+|||++.+++++++++.....++++|.+|||||+||+||||||||||||||+|++|||||+|+
T Consensus       161 ee~~el~e~l~~~wqeY~epg~~~d~s~~r~t~~~~~~~~~~v~lPLgeg~Lt~NLGiPiiVVctKsD~ie~LEKe~~yk  240 (475)
T pfam05783       161 EEMKAGRQKLEKDWQEYVEPGEDLDGSPQRRTSVVGSFDEEHVLLPLGQDTLTHNLGLPVLVVCTKCDAMSVLEKEHDYR  240 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEECCCHHHHHHCCCCCC
T ss_conf             89999999999999986055346787763245665653444565778876341278826999861762133332015664


Q ss_pred             HHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCC
Q ss_conf             78999999999999997187688832663678999999999876065556556411364025268888378888765276
Q Ver_Hs_NP_0572  261 DEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGILHENF  340 (523)
Q Consensus       261 dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLygfpf~~~a~ViDrD~IfIPaGWDs~~KI~IL~Enf  340 (523)
                      ||||||||||||+|||+|||||||||+|+++||+|||+||+||||||||+++|+|+|||+||||||||||+||+||||||
T Consensus       241 eE~fDfIqq~LR~~cLqYGAsLiYTS~ke~kNldlLykYl~HrlYgfpf~~~a~VvekDaIfIPsGWDn~kKI~Il~Enf  320 (475)
T pfam05783       241 DEHFDFIQSHLRKFCLQYGAALIYTSVKETKNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKIDILHENF  320 (475)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEHHEEEECCCCCCHHHHHHHHCCC
T ss_conf             36799999999999987097589854776423899999999886076545622001000034058888145567543365


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11378753023678886512020021112407889999999986268778888766677887777768888877777755
Q Ver_Hs_NP_0572  341 QTLKAEDNFEDIITKPPVRKFVHEKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASV  420 (523)
Q Consensus       341 ~~~~~~d~y~~ii~kPp~rk~~~~~ei~aedeQ~FL~klq~~l~~~p~t~a~~p~~~~~~~~~~s~~~~~~~~~~~~~~~  420 (523)
                      ++|+++|+|||||+|||+||.+|++||+|||||+||||||++|++||++++++|.+++   |.|+||+.+|+ +..+++.
T Consensus       321 ~~~k~~~~~ed~i~kp~~rk~~~~~ei~aeddQ~Fl~k~q~~l~~~~~~~~~~~~~~~---~~~~p~~~~~~-~~~~~~~  396 (475)
T pfam05783       321 PTVKAEDAYEDIITKPPVRKVVHEKEIEAEDDQAFLMKLQSILAKQPTTAAPRPLRSQ---GVGSPRTMPRT-PGTVGQS  396 (475)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCCCC-CCCCCCC
T ss_conf             4357876422344788402333333200012789999999997167877777755677---78887457745-5423666


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHH
Q ss_conf             6555665556888888851100578888888742688887666666666666677766666544257743134-589999
Q Ver_Hs_NP_0572  421 SPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPVL-DVHAEL  499 (523)
Q Consensus       421 ~p~~~~~~k~d~~~~~~~~~egvLanFFnsLl~Kkt~sp~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~el  499 (523)
                      +|    +||+|||+++|+++||||||||||||||||||||.|+..               +++++++||++++ ||||||
T Consensus       397 ~p----~kk~dp~~~~~~~~egvlanffnsll~kk~~sp~~~~~~---------------~~~~~~~~~~~~~~d~~~el  457 (475)
T pfam05783       397 SP----TKKIDPNLKATAGSEGVLANFFNSLLSKKTGSPGKPGPG---------------GSSPSTVGQKMVLSDVQAEL  457 (475)
T ss_pred             CC----CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC---------------CCCCCCCCCHHHHHHHHHHH
T ss_conf             77----646677757886431157777776630357888888888---------------87764665312378999999


Q ss_pred             HHHHCCCCCCCCCCCCCC
Q ss_conf             986337653356778876
Q Ver_Hs_NP_0572  500 DRITRKPVTVSPTTPTSP  517 (523)
Q Consensus       500 dr~~~~~~~~~~~~~~~~  517 (523)
                      |||+|+|+++.|++++.+
T Consensus       458 dr~~r~~~~~~~~~~~~~  475 (475)
T pfam05783       458 DRLTRSPQSPKPMSPTES  475 (475)
T ss_pred             HHHHCCCCCCCCCCCCCC
T ss_conf             987437787778886789


No 3  
>KOG3905 Dynein light intermediate chain [Cell motility]
Probab=100.00  E-value=0  Score=1292.02  Aligned_columns=473  Identities=78%

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             86432234567653211046888666654533679999998864144542578765889736997678999997420146
Q Ver_Hs_NP_0572   14 PPGLSSTYTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEY   93 (523)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~nlWssiL~~v~t~~~~klp~~KnILvLG~~~sGKTtLl~~Lq~~e~~   93 (523)
                      ||++..++.|||+||++++  .+..++|++|||||||+||+||+|+.|+|||+||||||||++++|||+||++||++|++
T Consensus         1 ppg~~~~l~~g~~~nav~s--~~~~~~deeegqnlWs~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~~   78 (473)
T KOG3905           1 PPGTAQPLEFGPTGNAVAS--VGYSSTDEEEGQNLWSEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSETV   78 (473)
T ss_pred             CCCCCCCCCCCCCHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf             9886653246874134544--32014535677899999986542012344778865799705887457898876302456


Q ss_pred             CCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88865214564045000043252463686586243245556787002666455655401013689999999999999999
Q Ver_Hs_NP_0572   94 KKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHV  173 (523)
Q Consensus        94 kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi  173 (523)
                      |||+||||+||+||||||||++||+||||||++||++||||||++.|+++||||+++||++||+||++|++|++|||+||
T Consensus        79 KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehi  158 (473)
T KOG3905          79 KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHI  158 (473)
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHCCCEEECCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             77653126788621310044654871487187555212432046556154589899865750358999999999999989


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             73278988999999999999998504555666655344567666776534478887623005883279985074125555
Q Ver_Hs_NP_0572  174 DKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVL  253 (523)
Q Consensus       174 ~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~L  253 (523)
                      +++++++|+|++++++++++||+|+|||+|+|+|||||++....+.|+++++||++++||||||||++|||||||+|.+|
T Consensus       159 dkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~l  238 (473)
T KOG3905         159 DKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVL  238 (473)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEEECCCHHHHH
T ss_conf             86258989999999998888897605124788886203433356553111122677620000687479998424303345


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHH
Q ss_conf             42057747899999999999999718768883266367899999999987606555655641136402526888837888
Q Ver_Hs_NP_0572  254 EKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKI  333 (523)
Q Consensus       254 EKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLygfpf~~~a~ViDrD~IfIPaGWDs~~KI  333 (523)
                      ||||+|+||||||||+|||+|||+|||+|||||+||+|||+||||||+||+|||||+++|+|||||+|||||||||++||
T Consensus       239 eke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI  318 (473)
T KOG3905         239 EKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKI  318 (473)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCEEEECCCCCCCCHH
T ss_conf             52010016789999999999998606302554111245568888888876415531350012320314630466863002


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             87652761137875302367888651202002111240788999999998626877888876667788777776888887
Q Ver_Hs_NP_0572  334 GILHENFQTLKAEDNFEDIITKPPVRKFVHEKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSV  413 (523)
Q Consensus       334 ~IL~Enf~~~~~~d~y~~ii~kPp~rk~~~~~ei~aedeQ~FL~klq~~l~~~p~t~a~~p~~~~~~~~~~s~~~~~~~~  413 (523)
                      .||||||++++++|+|+|||.|||+||.+|++||+|||||+||||||++|++||+|++++|.++++|.|++|||||+|.+
T Consensus       319 ~Il~En~~~vkaed~y~d~itkpp~Rk~v~ekei~aEddQaFL~k~q~iLak~~~t~a~rp~~sq~~~~~ksprtpg~~g  398 (473)
T KOG3905         319 DILHENFPTVKAEDNYEDIITKPPVRKVVHEKEIEAEDDQAFLMKLQSILAKQPTTAAPRPRTSQERGPDKSPRTPGRSG  398 (473)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             21000356778776533243688401566666541013789999999986058888887865467888788876788876


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             77777556555665556888888851100578888888742688887666666666666677766666544257743134
Q Ver_Hs_NP_0572  414 SSNVASVSPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPVL  493 (523)
Q Consensus       414 ~~~~~~~~p~~~~~~k~d~~~~~~~~~egvLanFFnsLl~Kkt~sp~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (523)
                      ++     ||    .||+||      ++||||||||||||||||||||+|             |+++...++|++|||+||
T Consensus       399 ~s-----SP----~k~~~P------~segVlasffnsll~kktgspg~~-------------g~g~~~s~~~k~~q~~v~  450 (473)
T KOG3905         399 SS-----SP----LKKSDP------TSEGVLASFFNSLLSKKTGSPGGP-------------GAGGGSSSTKKSGQKPVL  450 (473)
T ss_pred             CC-----CC----CCCCCC------HHHHHHHHHHHHHHHHCCCCCCCC-------------CCCCCCCCCCCCCHHHHH
T ss_conf             66-----78----888885------024678999998864126888888-------------887654211353102578


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             58999998633765335677887655678
Q Ver_Hs_NP_0572  494 DVHAELDRITRKPVTVSPTTPTSPTEGEA  522 (523)
Q Consensus       494 d~~~eldr~~~~~~~~~~~~~~~~~~~~~  522 (523)
                      ||+||||||+|+|+     .+++ ||+||
T Consensus       451 ~v~aeldr~trk~~-----t~~~-te~e~  473 (473)
T KOG3905         451 DVHAELDRITRKPV-----TPTS-TEGEA  473 (473)
T ss_pred             HHHHHHHHHHCCCC-----CCCC-CCCCC
T ss_conf             89999887513777-----7776-55689


No 4  
>PTHR12688 DYNEIN LIGHT INTERMEDIATE CHAIN; InterPro: IPR008467 This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo .; GO: 0003774 motor activity.
Probab=100.00  E-value=0  Score=964.54  Aligned_columns=404  Identities=76%

Q ss_pred             CCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             52145640450000432524636865862432455567870026664556554010136899999999999999997327
Q Ver_Hs_NP_0572   98 GLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLK  177 (523)
Q Consensus        98 gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~  177 (523)
                      ||+|+|++|+|+||||.+||+||||||++||++||||+++++|+++|||+||+||++||+||++||+|++|||+|+++|+
T Consensus         1 g~~Y~y~~v~d~d~d~~~r~~vW~Ldgd~~~~gLlk~a~~~~s~~~tl~~~~~dm~~PW~~~~~L~~W~~v~~~~~~kl~   80 (415)
T PTHR12688         1 GLEYLYLNVHDEDRDDLTRCNVWILDGDLYHKGLLKFALSAESLPDTLVILVADMSKPWTVMDSLQKWASVLREHIDKLK   80 (415)
T ss_pred             CCCHHHHHHHHCCHHHHHHCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             92013220110360134321010343527677788863173017899999999872255799999999999999998733


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCC
Q ss_conf             89889999999999999985045556666553445676667765344788876230058832799850741255554205
Q Ver_Hs_NP_0572  178 IPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEH  257 (523)
Q Consensus       178 i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~  257 (523)
                      +++|+|+++++++++.||+|+||+++.++++.++      ..|+.+.+||++++||+|||+|++|||||||.|++|||||
T Consensus        81 i~~~~~~~~~~~~~~~~q~y~e~~~~~~~s~~~~------~~d~~~~lp~~~~~lt~nlG~~~~vV~~k~d~~~~L~ke~  154 (415)
T PTHR12688        81 IPPEEMKELEQKLVKDFQEYVEPGEGLPGSPLRR------NADELVPLPLGEGTLTHNLGIPVVVVCTKSDAMSVLEKEH  154 (415)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH------HHHHHHHCCCCHHHHHHHCCCEEEEEEECCHHHHHHHHHC
T ss_conf             8888999999999997542102001333342011------2344431234124677637916999874131578875430


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             77478999999999999997187688832663678999999999876065556556411364025268888378888765
Q Ver_Hs_NP_0572  258 DYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGILH  337 (523)
Q Consensus       258 ~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLygfpf~~~a~ViDrD~IfIPaGWDs~~KI~IL~  337 (523)
                      +|+||||||||++||+|||+|||+|||||+||+|||+||||||+||+|||+|+.+|.|||||+||||||||+++||+|||
T Consensus       155 dyrdehfDfiq~~lR~fcL~yga~L~ytsvke~kN~dLlykYivh~~yGf~f~~~a~VvekdavfiPaGWD~~kKI~il~  234 (415)
T PTHR12688       155 DYRDEHFDFIQSHLRKFCLQYGAALIYTSVKEEKNIDLLYKYIVHKLYGFPFTIPALVVEKDAVFIPAGWDNEKKIGILH  234 (415)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEEEEECCCCCCHHHHHHHH
T ss_conf             31288999999999999998402531101001334899999998886065434401112200045168988077889876


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             27611378753023678886512020021112407889999999986268778888766677887777768888877777
Q Ver_Hs_NP_0572  338 ENFQTLKAEDNFEDIITKPPVRKFVHEKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNV  417 (523)
Q Consensus       338 Enf~~~~~~d~y~~ii~kPp~rk~~~~~ei~aedeQ~FL~klq~~l~~~p~t~a~~p~~~~~~~~~~s~~~~~~~~~~~~  417 (523)
                      |||++++++|.|+++|+|||+||.+|++||.|||||+||||||++|++||++.+ +..++++|.|+|||+|+++.++.++
T Consensus       235 enf~~~~~~d~y~d~i~~P~~Rk~v~~~~~~aed~Q~fl~k~~~~l~~~~~~~~-~~~e~p~r~~~~S~~~~~~~~~~~~  313 (415)
T PTHR12688       235 ENFTTVKPEDAYEDIIVKPPVRKLVHEKEIAAEDEQVFLMKQQSLLAKQPATPT-RTSESPARGPGGSPRTQGRGGPASV  313 (415)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             052002444210110257850123458887544677899999999852123211-0000111256665445677765422


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHH
Q ss_conf             7556555665556888888851100578888888742688887666666666666677766666544257743134-589
Q Ver_Hs_NP_0572  418 ASVSPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPVL-DVH  496 (523)
Q Consensus       418 ~~~~p~~~~~~k~d~~~~~~~~~egvLanFFnsLl~Kkt~sp~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~  496 (523)
                      ++++|.+.+.||+||+.++++.+||||||||||||+|||||||+|             |.++...+++++||+.++ ++|
T Consensus       314 ~~~~~~~~~~~k~d~~~~~~~~~~g~la~ffn~Ll~k~~gs~g~~-------------~~gg~~~~~~~~g~~~~~~~~~  380 (415)
T PTHR12688       314 PSASPGTASVKKPDPNLKNNAASEGVLANFFNSLLSKKTGSPGSP-------------GAGGVQSTAKKSGQKGVLSDVQ  380 (415)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-------------CCCCCCCCCCCCCCHHHHHHHH
T ss_conf             110234555554452100343011256777765531035788876-------------5455555543334314677789


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             9999863376533567788765567
Q Ver_Hs_NP_0572  497 AELDRITRKPVTVSPTTPTSPTEGE  521 (523)
Q Consensus       497 ~eldr~~~~~~~~~~~~~~~~~~~~  521 (523)
                      +||||+.|+|+++.++.++...+++
T Consensus       381 ~~l~~~~~~~~~~~~~~~~~~~~~~  405 (415)
T PTHR12688       381 AELDRLLRKPDSVVPTSPTENEKGE  405 (415)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             9999986301110367630256777


No 5  
>PTHR13236 DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2.
Probab=99.94   E-value=8.5e-27  Score=207.30  Aligned_columns=264  Identities=24%

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC-CCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             787658897369976789999974201468886-5214564045000043252463686586243245556787002666
Q Ver_Hs_NP_0572   65 PAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGR-GLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKD  143 (523)
Q Consensus        65 p~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~-gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~  143 (523)
                      +..|.|.++|.++.||||+|.++...++.+|++ +|||+|.+....+...+..+|+|+|.|......|+.+.++.++++.
T Consensus        38 ~~e~~~ffiGsk~gGKttiilr~ldrde~~kPtlaLEYtygRr~~g~~~~Kdiah~WELGGg~~~~~li~iPit~~~l~~  117 (397)
T PTHR13236        38 IAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRT  117 (397)
T ss_pred             EEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEECHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHH
T ss_conf             01016888873488546677656323456787400000011110468885303565531774245778641223012531


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             455655401013689999999999999999732--7898899999999999999850455566-6655344567666776
Q Ver_Hs_NP_0572  144 TLVMLVVDMSKPWTALDSLQKWASVVREHVDKL--KIPPEEMKQMEQKLIRDFQEYVEPGEDF-PASPQRRNTASQEDKD  220 (523)
Q Consensus       144 TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L--~i~~ee~ke~~e~~i~~~q~y~epg~d~-~~s~~~~~~~~~~~~d  220 (523)
                      ..+|++||+|+|..+|.++..|+.-++.++++.  +......+...+.-.+.|.....-..-. -..............+
T Consensus       118 ~~~~lvLDlS~p~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (397)
T PTHR13236       118 FSLVLVLDLSKPNDLWPTLENLLQATKSHVDKVLLKLGKTNAKAVSEMRQRIWNNMPKDHPVSCCLGLLLESLVPFIVND  197 (397)
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             20110440576400245499999999999999999852013567898888887420012468999999998888888887


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             53447888762300588327998507412555542057747899999999999999718768883266367899999999
Q Ver_Hs_NP_0572  221 DSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYI  300 (523)
Q Consensus       221 ~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl  300 (523)
                      ....--...-.....++||++||..|+|.+      +++..|...++-++||.+++.|||+|+|.|.+.......+...+
T Consensus       198 ~~~~~~~~~~~~~~~~p~~~~i~g~kyD~f------~~~~~e~rk~~~~~Lr~~ah~~Ga~L~~~s~~~~~l~~~~~~~~  271 (397)
T PTHR13236       198 NITGNAFPDLELVDPFPIPLVIVGSKYDVF------QDFDSEKRKVICRTLRFLAHAYGASLLFLSSKSEALLKKVRGVI  271 (397)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             776432023565510781168852011011------05446789999999999999743687677422589999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHH
Q ss_conf             9876065556556411364025268888378888
Q Ver_Hs_NP_0572  301 VQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIG  334 (523)
Q Consensus       301 ~HrLygfpf~~~a~ViDrD~IfIPaGWDs~~KI~  334 (523)
                      -|..||.+......+.....++||+|.|+|.+|+
T Consensus       272 ~~l~Fg~~~~~~~~~~~~~P~~~~~g~d~~~~~g  305 (397)
T PTHR13236       272 NHLAFGSPLPKSILVDHNKPLAIPAGLDSLAKIG  305 (397)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCC
T ss_conf             8886303566776520457716870613476606


No 6  
>KOG3929 Uncharacterized conserved protein [Function unknown]
Probab=99.91   E-value=1.3e-23  Score=185.35  Aligned_columns=246  Identities=27%

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC--CCEEEEEECCC-HHCCHHH
Q ss_conf             66545336799999988641445425787658897369976789999974201468886--52145640450-0004325
Q Ver_Hs_NP_0572   39 AGDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGR--GLEYLYLNVHD-EDRDDQT  115 (523)
Q Consensus        39 ~~~~~~~~nlWssiL~~v~t~~~~klp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~--gLeY~Yl~V~D-eDrdd~a  115 (523)
                      .|-..|-|      |++|.++.-      ..|+++|+++.  |++|.+.--.++.++.-  +|||+|  -+. .-+....
T Consensus        29 nG~~~deq------L~e~~~~~E------~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYty--gRR~~g~~~kd   92 (363)
T KOG3929          29 NGSEGDEQ------LAEIAEKFE------FFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTY--GRRAKGHNPKD   92 (363)
T ss_pred             CCCHHHHH------HHHHHCCHH------CEEEEECCCCE--EEEEEECCCCCCCCCCCCEEEEEHH--HHHHCCCCCHH
T ss_conf             23213789------998503002------05677338850--6653300576567899721221012--34414788514


Q ss_pred             HCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH
Q ss_conf             2463686586243245556787002666455655401013689999999999999999732-----78988999999999
Q Ver_Hs_NP_0572  116 RCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKL-----KIPPEEMKQMEQKL  190 (523)
Q Consensus       116 r~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L-----~i~~ee~ke~~e~~  190 (523)
                      ..++|.|.|......||...++-.++.-+.+|++||||+|-.+|-.|..-++-+|.|++++     +..++...+|++++
T Consensus        93 iaN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~  172 (363)
T KOG3929          93 IANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRI  172 (363)
T ss_pred             HHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             56555326732468886055455628775666765115624432579999999998999999987414889999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99999850455566665534456766677653447888762300588327998507412555542057747899999999
Q Ver_Hs_NP_0572  191 IRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSH  270 (523)
Q Consensus       191 i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~  270 (523)
                      +                    +.+.+.+.|....-|+         .||+++|..|+|.+      ++|..|...-+-|+
T Consensus       173 ~--------------------~rvgqd~~d~e~~dP~---------P~PV~IVgsKYDvF------q~FesekRkH~C~~  217 (363)
T KOG3929         173 W--------------------NRVGQDHPDHELIDPF---------PVPVVIVGSKYDVF------QDFESEKRKHICKT  217 (363)
T ss_pred             H--------------------HHHCCCCCCCCCCCCC---------CCCEEEECCCCHHH------CCCCHHHHHHHHHH
T ss_conf             9--------------------8621468740002778---------85347853520001------26636789999999


Q ss_pred             HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf             99999971876888326636789999999998760655565564113640252688883788887
Q Ver_Hs_NP_0572  271 IRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGI  335 (523)
Q Consensus       271 LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLygfpf~~~a~ViDrD~IfIPaGWDs~~KI~I  335 (523)
                      ||..+..|||+|.+-|.|-++...++..-+-|.-||.+-...+.|+.-..+||-+|.|||++|++
T Consensus       218 LRf~Ah~yGaaLlmfSskMe~l~K~ir~~i~HlaFG~~~~~s~~vD~NkPlfi~~G~DS~~~IG~  282 (363)
T KOG3929         218 LRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGIDKSKSICVDQNKPLFITAGLDSFGQIGS  282 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCHHHCCC
T ss_conf             99999997789999888789999998777775404765766545307874589855532233378


No 7  
>cd04128 Spg1 Spg1p.  Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase.  Spg1p is an essential gene that localizes to the spindle pole bodies.  When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p.  Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p.  The existence of a SIN-related pathway in plants has been proposed.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP.  Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are
Probab=99.12   E-value=2.9e-09  Score=86.50  Aligned_columns=177  Identities=26%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.|+..   .+.+...-|++|.-..+.-++.  .-.+.+|=..|...+.++.+.-..--+    .+
T Consensus         3 ivliGd~~VGKTsLi~r~~~~~F~~~y~~TiG~~~~~k~i~v~~~--~v~l~iwDtaGqE~f~~~~~~y~~~a~----~~   76 (182)
T cd04128           3 IGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGT--EITFSIWDLGGQREFINMLPLVCNDAV----AI   76 (182)
T ss_pred             EEEEECCCCCHHHHHHHHHCCEECCCCCCEEEEEEEEEEEEECCE--EEEEEEEECCCCCCCHHHHHHHCCCCC----EE
T ss_conf             899816984388887776437127763550344678989998896--899887316888310127786403777----68


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+-++ +.+++|++.++.+-..                                                   
T Consensus        77 ilVfDit~~~Sf-~~i~~W~~~i~~~~~~---------------------------------------------------  104 (182)
T cd04128          77 LFMFDLTRKSTL-NSIKEWYRQARGFNKT---------------------------------------------------  104 (182)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             999865997899-9999999999862799---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCC
Q ss_conf             88762300588327998507412555542057747899999999999999718768883266367899999999987606
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYG  306 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLyg  306 (523)
                                .+|| +|.+|+|.+.      +...++-+.+....+.+|-++|+.+|+||+|.+.|++-+.+.+.-++|+
T Consensus       105 ----------~~~I-LVGNK~DL~~------~~~~~~~~~~~~~~~~~a~~~~~~~~etSAktg~nV~e~Fe~l~~ki~~  167 (182)
T cd04128         105 ----------AIPI-LVGTKYDLFA------DLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             ----------CCEE-EEECCCCCCC------CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             ----------6089-9832743100------1442456778899999999729959999724798878999999999853


Q ss_pred             CCCCCCCCCCCCCEE
Q ss_conf             555655641136402
Q Ver_Hs_NP_0572  307 FPYKIPAVVVEKDAV  321 (523)
Q Consensus       307 fpf~~~a~ViDrD~I  321 (523)
                      .+.+.|.+.---+.|
T Consensus       168 ~~~~~~~~~~~~~~~  182 (182)
T cd04128         168 LPLTIPEILTVGEPI  182 (182)
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             788877668888899


No 8  
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.73A {Homo sapiens}
Probab=99.02   E-value=1.5e-09  Score=88.49  Aligned_columns=185  Identities=21%

Q ss_pred             HHHCCCCCCCCCCCEE--EEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCC
Q ss_conf             8641445425787658--89736997678999997420146888652145640450000432524636865862432455
Q Ver_Hs_NP_0572   55 EVSTRSRSKLPAGKNV--LLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLL  132 (523)
Q Consensus        55 ~v~t~~~~klp~~KnI--LvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LL  132 (523)
                      |--.+.+.--|++|+|  +|+|+.++|||||+.+|...+-..........+..+.-......-++++|-..|...+..+.
T Consensus         6 ~~~~~~~~~~~~~k~iKV~iiG~~gvGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~   85 (201)
T 2q3h_A            6 EPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR   85 (201)
T ss_dssp             --------------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG
T ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEECCCCCCHHHCCCC
T ss_conf             87777788888887248998707997789999998717656553422555789999860605665303465200110012


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             56787002666455655401013689999999999999999732789889999999999999985045556666553445
Q Ver_Hs_NP_0572  133 KFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRN  212 (523)
Q Consensus       133 K~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~  212 (523)
                      +..+..-.    .++||.|++.+.++.+.++.|+..++.+..                                      
T Consensus        86 ~~~~~~a~----~~iiV~d~~~~~Sf~~~~~~~~~~i~~~~~--------------------------------------  123 (201)
T 2q3h_A           86 PLCYTNTD----IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP--------------------------------------  123 (201)
T ss_dssp             GGGGTTCS----EEEEEEETTCHHHHHHHHHTHHHHHHHHCS--------------------------------------
T ss_pred             CCHHHHHH----HCCEEEECCCHHHHHHHHHHHHHHHHHHCC--------------------------------------
T ss_conf             00100122----122112113166677899987655543067--------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHCCEEEE-ECCCCH
Q ss_conf             67666776534478887623005883279985074125555420577478999-9999999999971876888-326636
Q Ver_Hs_NP_0572  213 TASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFD-FFQSHIRKFCLRYGAALIY-TSVKEN  290 (523)
Q Consensus       213 ~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fD-fIqq~LR~icL~YGAaLiY-TS~ke~  290 (523)
                                              .+|++||++|+|..+.............. +..+..+.+|-++++-.+| ||++..
T Consensus       124 ------------------------~~piiivgnK~D~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~Sak~~  179 (201)
T 2q3h_A          124 ------------------------KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQ  179 (201)
T ss_dssp             ------------------------SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             ------------------------CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             ------------------------73688861147841135677776553125577899999999708953899851588


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             789999999998760
Q Ver_Hs_NP_0572  291 KNIDLVYKYIVQKLY  305 (523)
Q Consensus       291 knl~LLykYl~HrLy  305 (523)
                      .|++-+..++.....
T Consensus       180 ~gI~e~f~~ii~~al  194 (201)
T 2q3h_A          180 KNLKEVFDAAIVAGI  194 (201)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             787899999999998


No 9  
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96   E-value=5e-08  Score=77.96  Aligned_columns=159  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCC-CCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             8897369976789999974201-468886521456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIE-EYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e-~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|..++|||||+.+|.+.. ........+..+..+.-...+..-.+.+|...|......+.+..+..-.+    +++
T Consensus        32 I~iiG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~----iil  107 (191)
T 1oix_A           32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG----ALL  107 (191)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE----EEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECEEEEEEEECCCCCHHHHHHHHHHCCCCCE----EEE
T ss_conf             9998179977899999986482564443321220110268750213444551477720234567764136765----899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.+.+ ++.+.+|...+..+.                                                       
T Consensus       108 v~d~~~~~S-~~~~~~~~~~i~~~~-------------------------------------------------------  131 (191)
T 1oix_A          108 VYDIAKHLT-YENVERWLKELRDHA-------------------------------------------------------  131 (191)
T ss_dssp             EEETTCHHH-HHTHHHHHHHHHHHS-------------------------------------------------------
T ss_pred             EEEECCCCC-HHHHHHHHHHHHHHC-------------------------------------------------------
T ss_conf             975077530-689999888777632-------------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                            +..+|++||++|+|    |.+++.-..++       ++.||-+++...+.||.+.+.|++-+...|...+|
T Consensus       132 ------~~~~piiivgnK~D----l~~~~~i~~~e-------~~~~~~~~~~~~~evSak~~~~I~elf~~i~~~iy  191 (191)
T 1oix_A          132 ------DSNIVIMLVGNKSD----LRHLRAVPTDE-------ARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY  191 (191)
T ss_dssp             ------CTTCEEEEEEECGG----GGGGCCSCHHH-------HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             ------CCCCEEEEEECCCC----CCCCCCCCHHH-------HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             ------89977999841433----00003688899-------99999963993899961688688899999999709


No 10 
>e2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxID:9606]} SCOP: u2gjsb_
Probab=98.95   E-value=1.4e-08  Score=81.80  Aligned_columns=159  Identities=23%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88973699767899999742014688865214564045000043252463686586243245556787002666455655
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLV  149 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIv  149 (523)
                      |+|+|..++|||+|+.++.+.+........+-.|-..-.-+.... .+++|-..|...+..+.+..+..-.    .++||
T Consensus         4 I~iiG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~l~i~D~~G~~~~~~~~~~~~~~~d----~~ilv   78 (168)
T e2gjsa1           4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEA-SLMVYDIWEQDGGRWLPGHCMAMGD----AYVIV   78 (168)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCEEE-EEEEEEEEEECCCCCCCCCCCCCEE----EEEEE
T ss_conf             999807998799999988356267523506888999999714157-9999975310321000200124528----99998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40101368999999999999999973278988999999999999998504555666655344567666776534478887
Q Ver_Hs_NP_0572  150 VDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGA  229 (523)
Q Consensus       150 lDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLge  229 (523)
                      .|.+.+.++ +.+++|+..++++...-.                                                    
T Consensus        79 ~d~t~~~sf-~~~~~~~~~i~~~~~~~~----------------------------------------------------  105 (168)
T e2gjsa1          79 YSVTDKGSF-EKASELRVQLRRARQTDD----------------------------------------------------  105 (168)
T ss_pred             EEECCCCCH-HHHHHHHHHHHHHHCCCC----------------------------------------------------
T ss_conf             640235545-677578899996211267----------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             6230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  230 DTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       230 g~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              +|++||++|+|.           .++..+-++.+|.++-+|++..+.||++.+.|++-+...|+..+.
T Consensus       106 --------~piiivgnK~Dl-----------~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~~~f~~i~~~i~  162 (168)
T e2gjsa1         106 --------VPIILVGNKSDL-----------VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR  162 (168)
T ss_pred             --------CCEEEEEECCCC-----------CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             --------504567531332-----------324567989999999965980899970589788899999999999


No 11 
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus)} SCOP: d1zbda_
Probab=98.94   E-value=1.6e-08  Score=81.28  Aligned_columns=157  Identities=20%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|+.++|||||+.+|.+   .+.+....+.++.+..+..+++  ..++++|-..|...+..+.+..+..-..    +
T Consensus         8 i~iiG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~----~   81 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK--RIKLQIWDTAGQERYRTITTAYYRGAMG----F   81 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE--EEEEEEEEECCSGGGHHHHHTTTTTCCE----E
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCE--EEEEEEEECCCCCHHHHHHHHHCCCCCE----E
T ss_conf             999836998799999998658015440220110357899999886--8999985157731122321211013457----8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      ++|.|.+.+.++ +.+++|+..++...                                                     
T Consensus        82 i~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------------------------------  107 (169)
T d3raba_          82 ILMYDITNEESF-NAVQDWSTQIKTYS-----------------------------------------------------  107 (169)
T ss_dssp             EEEEETTCHHHH-HTHHHHHHHHHHHC-----------------------------------------------------
T ss_pred             EEEEECCCCCHH-HHHHHHHHHHHHHH-----------------------------------------------------
T ss_conf             998622554205-66888999987653-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              .-.+|++||++|+|..           ++..+.++-.+.++-++|...+.||++...|++-+...|...+.
T Consensus       108 --------~~~~pivvv~nK~Dl~-----------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~i~e~f~~li~~i~  167 (169)
T d3raba_         108 --------WDNAQVLLVGNKCDME-----------DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             --------CSCCEEEEEEECTTCG-----------GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             --------CCCCCEEHHHHCCCCC-----------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             --------0683000000012321-----------11257888999999955983999872689888899999999996


No 12 
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC; HET: GDP; 2.30A {Homo sapiens}
Probab=98.93   E-value=6.9e-09  Score=83.90  Aligned_columns=170  Identities=24%

Q ss_pred             CCCCCCCCCCE-------EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCC
Q ss_conf             44542578765-------88973699767899999742014688865-21456404500004325246368658624324
Q Ver_Hs_NP_0572   59 RSRSKLPAGKN-------VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKG  130 (523)
Q Consensus        59 ~~~~klp~~Kn-------ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~  130 (523)
                      +|.+-+|-|.+       |+|+|+.++|||||+.+|.+.+-..+... .+..+....-...+..-++.+|...|......
T Consensus        10 ~~~~~~~r~~~~~d~~~KI~iiG~~~vGKSSli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~   89 (193)
T 2oil_A           10 HSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA   89 (193)
T ss_dssp             ----------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCHHHCC
T ss_conf             45677889986754578999980799879999999865811576356146667777887656566667614667001100


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             55567870026664556554010136899999999999999997327898899999999999999850455566665534
Q Ver_Hs_NP_0572  131 LLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQR  210 (523)
Q Consensus       131 LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~  210 (523)
                      +.+..+...+    .+++|.|.+.+.++ +.+..|+.-++++...                                   
T Consensus        90 ~~~~~~~~~~----~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-----------------------------------  129 (193)
T 2oil_A           90 ITSAYYRGAV----GALLVFDLTKHQTY-AVVERWLKELYDHAEA-----------------------------------  129 (193)
T ss_dssp             THHHHHTTCC----EEEEEEETTCHHHH-HTHHHHHHHHHTTSCT-----------------------------------
T ss_pred             CHHCCCCCCE----EEEEEEEECCCCHH-HHHHHHHHHHHHCCCC-----------------------------------
T ss_conf             0002256752----79999750340000-0111100122100356-----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCH
Q ss_conf             45676667765344788876230058832799850741255554205774789999999999999971876888326636
Q Ver_Hs_NP_0572  211 RNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKEN  290 (523)
Q Consensus       211 ~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~  290 (523)
                                                .+|+++|++|+|.           +++.++..+.++.+|-.++...+.+|++.+
T Consensus       130 --------------------------~~piilv~nK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~~~Sak~~  172 (193)
T 2oil_A          130 --------------------------TIVVMLVGNKSDL-----------SQAREVPTEEARMFAENNGLLFLETSALDS  172 (193)
T ss_dssp             --------------------------TCEEEEEEECGGG-----------GGGCCSCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred             --------------------------CEEEEEEECCHHH-----------HHHHCCHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             --------------------------1344332132022-----------333111367778999865972999862689


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             789999999998760
Q Ver_Hs_NP_0572  291 KNIDLVYKYIVQKLY  305 (523)
Q Consensus       291 knl~LLykYl~HrLy  305 (523)
                      .|++-+..+|...+|
T Consensus       173 ~~I~elf~~i~~~i~  187 (193)
T 2oil_A          173 TNVELAFETVLKEIF  187 (193)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             788899999999999


No 13 
>e1z2aa_ c.37.1.8 (A:) Rab23 {Mouse (Mus musculus) [TaxID:10090]}
Probab=98.93   E-value=8.2e-09  Score=83.37  Aligned_columns=157  Identities=29%

Q ss_pred             EEEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             588973699767899999742---01468886521456404500004325246368658624324555678700266645
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTL  145 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TL  145 (523)
                      .|+|+|..++|||||+.+|.+   .+.+...-+.+|.+..+.-++++  .++.+|-..|...+..+.+..+..-.    .
T Consensus         4 kI~ivG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~l~i~d~~~~~~~~~~~~~~~~~~d----~   77 (164)
T e1z2aa_           4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED--VRLMLWDTAGQEEFDAITKAYYRGAQ----A   77 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCEE--EEEEECCCCCCCHHHHHHHHHCCCCC----E
T ss_conf             89998289988999999986480167623404533588999973288--87410146422024577886405875----7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56554010136899999999999999997327898899999999999999850455566665534456766677653447
Q Ver_Hs_NP_0572  146 VMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVV  225 (523)
Q Consensus       146 VvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~l  225 (523)
                      +++|.|++++.++ +.+.+|+.-++.+..+                                                  
T Consensus        78 ~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------------------------------  106 (164)
T e1z2aa_          78 CVLVFSTTDRESF-EAISSWREKVVAEVGD--------------------------------------------------  106 (164)
T ss_pred             EEEEEECCCCCCH-HHHHHHHHHHHHHCCC--------------------------------------------------
T ss_conf             9999740455424-6788888874310023--------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             88876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  226 PLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       226 PLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                  +|++||++|+|..           ++-.+-...++.++-++++..+.||.+...|++-+.+.|.-+..
T Consensus       107 ------------~piiiv~nK~Dl~-----------~~~~i~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~k~l  163 (164)
T e1z2aa_         107 ------------IPTALVQNKIDLL-----------DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_pred             ------------CEEEEEEECCCCC-----------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             ------------0023444200211-----------12367989999999965990999971589888899999999970


No 14 
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens}
Probab=98.91   E-value=7e-08  Score=76.97  Aligned_columns=167  Identities=26%

Q ss_pred             EEEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             588973699767899999742---01468886521456404500004325246368658624324555678700266645
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTL  145 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TL  145 (523)
                      +|+|+|+.++|||||+.++..   .+++....+.+|...+|...+ ...-++.+|-..|...+..+.+..+..-.    .
T Consensus         8 ki~iiG~~~vGKSsli~~~~~~~~~~~~~~T~~~~~~~~~v~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~----~   82 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG-NLNVTLQIWDIGGQTIGGKMLDKYIYGAQ----G   82 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT-TEEEEEEEEECTTCCTTCTTHHHHHTTCS----E
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCC-CEEEEEEEEECCCCCCCCCCCCCCCCCCC----C
T ss_conf             899980799889999999862833776222255423545322320-10356777531474312211211121000----0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56554010136899999999999999997327898899999999999999850455566665534456766677653447
Q Ver_Hs_NP_0572  146 VMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVV  225 (523)
Q Consensus       146 VvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~l  225 (523)
                      +++|.|.+.|..+-. ++.|+..++.+.....                                                
T Consensus        83 ~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~------------------------------------------------  113 (178)
T 2hxs_A           83 VLLVYDITNYQSFEN-LEDWYTVVKKVSEESE------------------------------------------------  113 (178)
T ss_dssp             EEEEEETTCHHHHHT-HHHHHHHHHHHHHHHT------------------------------------------------
T ss_pred             CEEEEECCCCCCCCC-HHHHHHHHHHHHCCCC------------------------------------------------
T ss_conf             001322024554110-1245677753100246------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             88876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  226 PLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       226 PLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                -.+|+++|++|+|    |+.+.....|+       ++.||-++++..+.+|++...+++.+...|...++
T Consensus       114 ----------~~~~iilV~nK~D----l~~~~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~~I~e~f~~i~~~i~  172 (178)
T 2hxs_A          114 ----------TQPLVALVGNKID----LEHMRTIKPEK-------HLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL  172 (178)
T ss_dssp             ----------CCCEEEEEEECGG----GGGGCSSCHHH-------HHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred             ----------CCCEEEEEECCCC----CHHHHCCCHHH-------HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ----------5630233302344----10222024588-------99999964990899961578788899999999998


Q ss_pred             CCCCC
Q ss_conf             65556
Q Ver_Hs_NP_0572  306 GFPYK  310 (523)
Q Consensus       306 gfpf~  310 (523)
                      +...+
T Consensus       173 ~~~~~  177 (178)
T 2hxs_A          173 GIKLN  177 (178)
T ss_dssp             TCCCC
T ss_pred             HHHCC
T ss_conf             62126


No 15 
>e2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxID:9606]} SCOP: u2erxb_ u2gf0c_ u2gf0d_ u2gf0a1 u2gf0b_
Probab=98.90   E-value=2.9e-08  Score=79.55  Aligned_columns=161  Identities=22%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             58897369976789999974201468886521456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      .|+|+|+.++|||||+.+|.+-.-.......--......-......-++.+|...|...+..+.+.....-.    .+++
T Consensus         4 kI~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~----~~i~   79 (171)
T e2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGH----AFIL   79 (171)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHCCCCC----EEEE
T ss_conf             899980799879999999863821666243022002579987464789999730561023343022115872----6999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.++++ +.+..|.+.+++.-....                                                   
T Consensus        80 v~d~~~~~s~-~~~~~~~~~l~~~~~~~~---------------------------------------------------  107 (171)
T e2erxa1          80 VYSITSRQSL-EELKPIYEQICEIKGDVE---------------------------------------------------  107 (171)
T ss_pred             EECCCCCCCH-HHHHHHHHHHHHHHCCCC---------------------------------------------------
T ss_conf             9717742007-899999754666402678---------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                              ++|++||++|+|.           ++...+-.+.++.||-++++.++++|++...+++-+.+.|++..
T Consensus       108 --------~~piiivgnK~Dl-----------~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gi~e~f~~i~~~~  164 (171)
T e2erxa1         108 --------SIPIMLVGNKCDE-----------SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_pred             --------CCCEEEEEECCCC-----------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             --------8527999731356-----------63335447899999996499289997058968789999999999


No 16 
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90   E-value=2.1e-08  Score=80.52  Aligned_columns=173  Identities=22%

Q ss_pred             HHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCC
Q ss_conf             9999886414454257876588973699767899999742014688865-214564045000043252463686586243
Q Ver_Hs_NP_0572   50 SCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYH  128 (523)
Q Consensus        50 ssiL~~v~t~~~~klp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~  128 (523)
                      ||=|  |.-++.  +.+ -.|+|+|..++|||||+.+|.+-.-..+-.. ++..|........+..-.+.+|-..+....
T Consensus        11 ~~~~--~~~~~~--~k~-~KI~iiG~~~vGKSsLi~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~   85 (192)
T 2fg5_A           11 SSGL--VPRGSA--IRE-LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF   85 (192)
T ss_dssp             --------------CEE-EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG
T ss_pred             CCCC--CCCCCC--CCE-EEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCHHHHH
T ss_conf             6676--778777--654-78999806997689999998728106776762233456664104650111000001002355


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             24555678700266645565540101368999999999999999973278988999999999999998504555666655
Q Ver_Hs_NP_0572  129 KGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASP  208 (523)
Q Consensus       129 ~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~  208 (523)
                      ..+.+..+..-.    .+++|.|.+.+..+ +++..|+..+++..                                   
T Consensus        86 ~~~~~~~~~~~~----~~i~v~d~~~~~s~-~~i~~~~~~i~~~~-----------------------------------  125 (192)
T 2fg5_A           86 HSLAPMYYRGSA----AAVIVYDITKQDSF-YTLKKWVKELKEHG-----------------------------------  125 (192)
T ss_dssp             GGGTHHHHTTCS----EEEEEEETTCTHHH-HHHHHHHHHHHHHS-----------------------------------
T ss_pred             HHHHHHHHHHHH----HEEEEECCCCHHHH-HHHHHHHHHHHHHC-----------------------------------
T ss_conf             678888763111----00122103440568-99999999998725-----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCC
Q ss_conf             34456766677653447888762300588327998507412555542057747899999999999999718768883266
Q Ver_Hs_NP_0572  209 QRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVK  288 (523)
Q Consensus       209 ~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~k  288 (523)
                                                ...+|++||++|+|..           ++...+.+.++.||-++++.++.+|++
T Consensus       126 --------------------------~~~~~iilVgnK~Dl~-----------~~~~~~~~~~~~~~k~~~~~~~evSak  168 (192)
T 2fg5_A          126 --------------------------PENIVMAIAGNKCDLS-----------DIREVPLKDAKEYAESIGAIVVETSAK  168 (192)
T ss_dssp             --------------------------CTTCEEEEEEECGGGG-----------GGCCSCHHHHHHHHHTTTCEEEECBTT
T ss_pred             --------------------------CCCCEEEEEECCCCHH-----------HHCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf             --------------------------8970688850522000-----------110454789999999639859998526


Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             3678999999999876
Q Ver_Hs_NP_0572  289 ENKNIDLVYKYIVQKL  304 (523)
Q Consensus       289 e~knl~LLykYl~HrL  304 (523)
                      ...|++-+..+|...|
T Consensus       169 ~g~gV~elf~~i~~~i  184 (192)
T 2fg5_A          169 NAINIEELFQGISRQI  184 (192)
T ss_dssp             TTBSHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHC
T ss_conf             8978889999999864


No 17 
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens)} SCOP: d1n6oa_ d1tu4a_ d1n6la_ d1tu4d_ d1n6ka_ d1n6ha_ d1tu3c_ d1tu3b_ d1n6na_ d1n6ra_ d1tu4b_ d1n6pa_ d1tu3d_ u1z0da1 d1huqa_ u1z07a1
Probab=98.89   E-value=2.3e-08  Score=80.32  Aligned_columns=159  Identities=19%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|+.++|||||+.++.+-+-...... ..-.|..+.-...+...++.+|...|...+..+.+..+..-.    .+++
T Consensus         9 i~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~----~~i~   84 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ----AAIV   84 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCS----EEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCC----EEEE
T ss_conf             999827997799999998648125563530356777765655690799987427773034454121026886----7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.+.++-. +.+|+..+....                                                       
T Consensus        85 v~d~~~~~s~~~-~~~~~~~~~~~~-------------------------------------------------------  108 (170)
T d1r2qa_          85 VYDITNEESFAR-AKNWVKELQRQA-------------------------------------------------------  108 (170)
T ss_dssp             EEETTCHHHHHH-HHHHHHHHHHHS-------------------------------------------------------
T ss_pred             EEECCCHHHHHH-HHHHHHHHHHHH-------------------------------------------------------
T ss_conf             830652035888-988899998864-------------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                            ...+|+++|.+|+|.           +++..+.++.++.|+-.+++.++.||.+...+++.+...|.++|+
T Consensus       109 ------~~~~piilv~nK~Dl-----------~~~~~i~~~~~~~~~~~~~~~~~e~Sak~g~gi~elf~~i~~~l~  168 (170)
T d1r2qa_         109 ------SPNIVIALSGNKADL-----------ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             ------CTTCEEEEEEECGGG-----------GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             ------HCCCCEEEEECCHHH-----------HHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             ------058612443032110-----------100365878999999855983999861689788899999999841


No 18 
>e2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxID:9606]} SCOP: u1z0aa1 u1z0ad_ u1z0ab_
Probab=98.89   E-value=4.2e-08  Score=78.51  Aligned_columns=159  Identities=18%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|+.++|||+|+.++.+..-...... .+..+....-...+....+.+|-..|...+..+.+..+....    .+++
T Consensus         6 V~ivG~~~vGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d----~~i~   81 (173)
T e2a5ja1           6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA----GALL   81 (173)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEECCCEEEEEEEECCCCCCCCCHHHHHHCCCC----EEEE
T ss_conf             999836997799999998648346663413552001011101585279998614785311000055504897----6899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.+.++ +.+.+|+.-+..+...-.                                                   
T Consensus        82 v~d~~~~~s~-~~~~~~~~~i~~~~~~~~---------------------------------------------------  109 (173)
T e2a5ja1          82 VYDITRRETF-NHLTSWLEDARQHSSSNM---------------------------------------------------  109 (173)
T ss_pred             EEECCCHHHH-HHHHHHHHHHHHHCCCCC---------------------------------------------------
T ss_conf             9742651467-898888999885216761---------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                |++||++|+|.           .++..+-++.++.+|-+++...+.||++...|++-+...+...+|
T Consensus       110 ----------p~iivgnK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~e~Saktg~gv~e~F~~l~~~i~  165 (173)
T e2a5ja1         110 ----------VIMLIGNKSDL-----------ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY  165 (173)
T ss_pred             ----------EEEEEECCCCC-----------HHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ----------23221011244-----------101032088999999964984999851689888899999999999


No 19 
>e1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxID:9606]}
Probab=98.89   E-value=3e-08  Score=79.46  Aligned_columns=167  Identities=22%

Q ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             257876588973699767899999742---01468886521456404500004325246368658624324555678700
Q Ver_Hs_NP_0572   63 KLPAGKNVLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAV  139 (523)
Q Consensus        63 klp~~KnILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~  139 (523)
                      .+|+ =.|+|+|..++|||||+.++..   ...+....+.+|....+...+....  +.+|-..+...+..+.+..+..-
T Consensus         4 ~~~~-iKi~ivG~~~vGKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~   80 (177)
T e1x3sa1           4 VLTT-LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK--LAIWDTAGQERFRTLTPSYYRGA   80 (177)
T ss_pred             CCCE-EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEE--EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             6661-35899807998799999998648116751464101356789988794899--99711653102223304331576


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             26664556554010136899999999999999997327898899999999999999850455566665534456766677
Q Ver_Hs_NP_0572  140 SLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDK  219 (523)
Q Consensus       140 si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~  219 (523)
                      .    ++++|.|.+.+.++-+ +.+|+.-++++....++                                         
T Consensus        81 d----~~i~~~d~~~~~s~~~-~~~~~~~i~~~~~~~~~-----------------------------------------  114 (177)
T e1x3sa1          81 Q----GVILVYDVTRRDTFVK-LDNWLNELETYCTRNDI-----------------------------------------  114 (177)
T ss_pred             C----EEEEECCCCCCHHHHH-HHHHHHHHHHHCCCCCC-----------------------------------------
T ss_conf             0----6898504676101000-13589999974576663-----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH
Q ss_conf             65344788876230058832799850741255554205774789999999999999971876888326636789999999
Q Ver_Hs_NP_0572  220 DDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKY  299 (523)
Q Consensus       220 d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykY  299 (523)
                                         |++||++|+|.            ++..+..+-++.||-++|+.++.||++...|++-+...
T Consensus       115 -------------------~iiiv~nK~Dl------------~~~~v~~~e~~~~~~~~~~~~~e~Sa~~g~gi~e~f~~  163 (177)
T e1x3sa1         115 -------------------VNMLVGNKIDK------------ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_pred             -------------------CEEEECCCCHH------------HCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf             -------------------22453011001------------10467888999999965982999861688787899999


Q ss_pred             HHHHHCCCCC
Q ss_conf             9987606555
Q Ver_Hs_NP_0572  300 IVQKLYGFPY  309 (523)
Q Consensus       300 l~HrLygfpf  309 (523)
                      |.++++..|.
T Consensus       164 i~~~i~~~~~  173 (177)
T e1x3sa1         164 LVEKIIQTPG  173 (177)
T ss_pred             HHHHHHCCCC
T ss_conf             9999850777


No 20 
>1ek0_A GTP-binding protein YPT51; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.89   E-value=6.3e-08  Score=77.27  Aligned_columns=160  Identities=24%

Q ss_pred             EEEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             588973699767899999742---01468886521456404500004325246368658624324555678700266645
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTL  145 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TL  145 (523)
                      .|+|+|+.++|||||+.+|.+   .+.+....+.+|....+...++.  -.+++|-..|...+..+.+..+..-.+    
T Consensus         5 ki~ivG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~l~i~d~~g~~~~~~~~~~~~~~~~~----   78 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT--VKFEIWDTAGQERFASLAPXYYRNAQA----   78 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE--EEEEEEEECCSGGGGGGHHHHHTTCSE----
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCC--CCEEEECCCCCHHHHHHHHHHCCCCCE----
T ss_conf             89988179977899999986483465534310234554200012234--302430344511232220111256503----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56554010136899999999999999997327898899999999999999850455566665534456766677653447
Q Ver_Hs_NP_0572  146 VMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVV  225 (523)
Q Consensus       146 VvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~l  225 (523)
                      ++||.|.+.|..+ +++..|+.-+.....+..                                                
T Consensus        79 ~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~------------------------------------------------  109 (170)
T 1ek0_A           79 ALVVYDVTKPQSF-IKARHWVKELHEQASKDI------------------------------------------------  109 (170)
T ss_dssp             EEEEEETTCHHHH-HHHHHHHHHHHHHSCTTC------------------------------------------------
T ss_pred             EEEEEECCCCCHH-HHHHHHHHHHHHHCCCCC------------------------------------------------
T ss_conf             7899702365045-566788888864113564------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             8887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  226 PLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       226 PLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                   |++||++|+|..+.-....-..+|        ++.||-.+++..+.||++.+.+++-+...|.+++
T Consensus       110 -------------~iivv~nK~D~~~~~~~~~v~~~~--------~~~~~~~~~~~~~e~Sa~~~~gi~elf~~i~~~i  167 (170)
T 1ek0_A          110 -------------IIALVGNKIDXLQEGGERKVAREE--------GEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             -------------EEEEEEECGGGGGSSCCCCSCHHH--------HHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             -------------CEEEEECCCCCCCHHHHHHHHHHH--------HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             -------------334541153100000001100789--------9999986598399986268868889999999970


No 21 
>cd00154 Rab Rab family.  Rab GTPases form the largest family within the Ras superfamily.  There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways.  The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide di
Probab=98.89   E-value=2.5e-08  Score=80.02  Aligned_columns=152  Identities=28%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+++...-+.+|..-.+.  ......++.+|-..|...+..|.+..+.--+    .+
T Consensus         3 i~ivG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~k~i~--~~~~~~~~~i~Dt~g~e~~~~~~~~~~~~~d----~~   76 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIE--IDGKTVKLQIWDTAGQERFRSITPSYYRGAH----GA   76 (159)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEE--ECCEEEEEEEEECCCCHHHHHHHHHHCCCCC----EE
T ss_conf             89982699668999999863824744465310036888998--8895999999865997145677787514898----69


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||.|++.+.++ +.+++|++.++++...                                                   
T Consensus        77 iiv~d~~~~~Sf-~~i~~~~~~i~~~~~~---------------------------------------------------  104 (159)
T cd00154          77 ILVYDITNRESF-ENLDKWLKELKEYAPE---------------------------------------------------  104 (159)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             999866997899-9999999999982699---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             88762300588327998507412555542057747899999999999999718768883266367899999999
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYI  300 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl  300 (523)
                                .+|+++|++|+|.           +++..+.....|.+|-++++..+.||++.+.|++-+.+-|
T Consensus       105 ----------~~piiivgnK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~F~~i  157 (159)
T cd00154         105 ----------NIPIILVGNKIDL-----------EDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSL  157 (159)
T ss_pred             ----------CCEEEEEECCCCH-----------HHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
T ss_conf             ----------9789998413100-----------0102656889999999659969999704798878999997


No 22 
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium; HET: GDP; 2.15A {Homo sapiens}
Probab=98.89   E-value=5.8e-09  Score=84.39  Aligned_columns=193  Identities=22%

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCC-CCCCEEEEEECCCHHCCHHHHCC
Q ss_conf             65453367999999886414454257876588973699767899999742014688-86521456404500004325246
Q Ver_Hs_NP_0572   40 GDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKK-GRGLEYLYLNVHDEDRDDQTRCN  118 (523)
Q Consensus        40 ~~~~~~~nlWssiL~~v~t~~~~klp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kK-g~gLeY~Yl~V~DeDrdd~ar~~  118 (523)
                      |.++-+-..=|-++-.-+..+.+...+ =.|+|+|..++|||||+.+|.+-+-... ...++..|.-..=...+..-.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~k~-~KI~ivG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~   80 (199)
T 2p5s_A            2 GSSHHHHHHSSGLVPRGSAKSFSSQKA-YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ   80 (199)
T ss_dssp             --------------------------C-EEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCEEEEE
T ss_conf             864344556656664776667786653-2799980799879999999865812565145402467888874156214564


Q ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             36865862432455567870026664556554010136899999999999999997327898899999999999999850
Q Ver_Hs_NP_0572  119 VWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYV  198 (523)
Q Consensus       119 vWiLdg~~~~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~  198 (523)
                      +|...|...+..+.+..+..-.    .+++|.|.+.|..+ +.+.+|+..++++...                       
T Consensus        81 i~d~~~~~~~~~~~~~~~~~~d----~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-----------------------  132 (199)
T 2p5s_A           81 LWDTAGQERFRSIAKSYFRKAD----GVLLLYDVTCEKSF-LNIREWVDMIEDAAHE-----------------------  132 (199)
T ss_dssp             EEECTTCTTCHHHHHHHHHHCS----EEEEEEETTCHHHH-HTHHHHHHHHHHHC-------------------------
T ss_pred             EECCCCHHHHHHHHHHHHHHHC----CEEEEEHHCCHHHH-HHHHCCCCCCCCCCCC-----------------------
T ss_conf             2025412455678898753300----22432001020233-3321000121113689-----------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             45556666553445676667765344788876230058832799850741255554205774789999999999999971
Q Ver_Hs_NP_0572  199 EPGEDFPASPQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRY  278 (523)
Q Consensus       199 epg~d~~~s~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~Y  278 (523)
                                                            ++|++||.+|+|..+....+     ++-.+.+...+.++-++
T Consensus       133 --------------------------------------~~Piiiv~nK~Dl~~~~~~~-----~~~~i~~~~~~~~a~~~  169 (199)
T 2p5s_A          133 --------------------------------------TVPIMLVGNKADIRDTAATE-----GQKCVPGHFGEKLAMTY  169 (199)
T ss_dssp             ---------------------------------------CCEEEEEECGGGHHHHHHT-----TCCCCCHHHHHHHHHHH
T ss_pred             --------------------------------------CCEEEEEECCCCHHHHHHHH-----HHHCCCHHHHHHHHHHC
T ss_conf             --------------------------------------72798821125602344444-----43134688999999855


Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             87688832663678999999999876
Q Ver_Hs_NP_0572  279 GAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       279 GAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                      ++..+.+|++.+.+++-+...|.+.+
T Consensus       170 ~~~~~~~Sak~g~gi~e~f~~i~~~i  195 (199)
T 2p5s_A          170 GALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             98699985257988899999999999


No 23 
>cd01868 Rab11_like Rab11-like.  Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.88   E-value=2.9e-08  Score=79.59  Aligned_columns=159  Identities=21%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+++|+.++|||+|+.++..-+-..+... ++..|....=.-.+..-.+.+|=..|...+..+.+.-+.--+    .++|
T Consensus         6 i~~iG~~~VGKTsli~r~~~~~F~~~~~~Tig~~~~~k~v~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~----~~ii   81 (165)
T cd01868           6 IVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAV----GALL   81 (165)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHCCCC----EEEE
T ss_conf             999826996589999998638567455641001246889864890899998538986124577676504886----7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |-|.+.+-++ +.+++|+..++++...                                                     
T Consensus        82 vyDit~~~Sf-~~i~~w~~~i~~~~~~-----------------------------------------------------  107 (165)
T cd01868          82 VYDITKKQTF-ENVERWLKELRDHADS-----------------------------------------------------  107 (165)
T ss_pred             EEECCCHHHH-HHHHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             9746997789-9999999999983289-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              .+|+++|.+|+|.           ++...+-.+-.+.+|.++|+..+.||+|...|++-+.+.|...+|
T Consensus       108 --------~~piilVGNK~DL-----------~~~r~v~~~e~~~~a~~~~~~~~e~Sak~g~ni~~~F~~l~~~i~  165 (165)
T cd01868         108 --------NIVIMLVGNKSDL-----------RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY  165 (165)
T ss_pred             --------CCEEEEEECCCCH-----------HHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             --------9379998216562-----------120377688999999965994999971479888899999998709


No 24 
>e1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxID:9606]} SCOP: u1xtsa_ u1xtra_
Probab=98.88   E-value=3.7e-08  Score=78.83  Aligned_columns=159  Identities=19%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88973699767899999742014688865214564045000043252463686586243245556787002666455655
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLV  149 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIv  149 (523)
                      |+|+|+.++|||+|+.++..-.-.......--..+...-......-.+.+|-..|...+..+.+....--+    .+++|
T Consensus         7 i~ivG~~~vGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d----~~ilv   82 (167)
T e1xtqa1           7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN----GYILV   82 (167)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCCE----EEEEE
T ss_conf             89981699879999999863811677344055310799998248999999850362334345511145402----79998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40101368999999999999999973278988999999999999998504555666655344567666776534478887
Q Ver_Hs_NP_0572  150 VDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGA  229 (523)
Q Consensus       150 lDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLge  229 (523)
                      .|.+.|.+| +.++.|+.-+.++.....                                                    
T Consensus        83 ~d~~~~~sf-~~~~~~~~~i~~~~~~~~----------------------------------------------------  109 (167)
T e1xtqa1          83 YSVTSIKSF-EVIKVIHGKLLDMVGKVQ----------------------------------------------------  109 (167)
T ss_pred             EEECCCCCH-HHHHHHHHHHHHHHCCCC----------------------------------------------------
T ss_conf             641232102-356777789986412578----------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  230 DTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       230 g~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                              +|++||++|+|.           .++..+-.+-++.|+-++++..+.||++.+.|++-+.+.|+..+
T Consensus       110 --------~piiivgnK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~li~~~  165 (167)
T e1xtqa1         110 --------IPIMLVGNKKDL-----------HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA  165 (167)
T ss_pred             --------CCEEEEEECCCC-----------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             --------618998613464-----------22246898999999995598299997158977789999999998


No 25 
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division.  Among the Ras superfamily, Ran is a unique small G protein.  It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily.  Ran may therefore interact with a wide range of proteins in various intracellular locations.  Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors.  Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins.  The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.87   E-value=8.8e-08  Score=76.28  Aligned_columns=157  Identities=24%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.|+..   .+++...-|.++....+..+.+..  ++.+|-..|...+.+|.+.-..--+    .+
T Consensus         3 IvliGd~~VGKTsli~r~~~~~F~~~y~~Tig~~~~~~~~~~~~~~i--~l~iwDtaG~e~f~~l~~~y~~~a~----~~   76 (166)
T cd00877           3 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKI--RFNVWDTAGQEKFGGLRDGYYIGGQ----CA   76 (166)
T ss_pred             EEEEECCCCCHHHHHHHHHCCEECCCCCCEEEEEEEEEEEEECCCEE--EEEEEECCCCCCCCCCCCCCCCCCC----EE
T ss_conf             89982698448999888763811666453464488899999879479--9998845785213545512000267----58


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      |||-|.+.++++-. +.+|++-++.+...                                                   
T Consensus        77 ilvfDit~~~Sf~~-i~~w~~~i~~~~~~---------------------------------------------------  104 (166)
T cd00877          77 IIMFDVTSRVTYKN-VPNWHRDLVRVCGN---------------------------------------------------  104 (166)
T ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             99986699789898-98899999864599---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCC
Q ss_conf             88762300588327998507412555542057747899999999999999718768883266367899999999987606
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYG  306 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLyg  306 (523)
                                 +|+++|++|+|    |+.+....++.         .++-++++..|-||+|.+.|++-+-.+|.-++.+
T Consensus       105 -----------ipivlVGNK~D----l~~~~~~~~~~---------~~~~~~~~~~~EtSAk~g~NV~e~F~~la~~il~  160 (166)
T cd00877         105 -----------IPIVLCGNKVD----IKDRKVKAKQI---------TFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             -----------CCEEEEECCCC----CCCCCCCHHHH---------HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             -----------65899932677----32011248999---------9999579949999704898988999999999853


Q ss_pred             CC
Q ss_conf             55
Q Ver_Hs_NP_0572  307 FP  308 (523)
Q Consensus       307 fp  308 (523)
                      -|
T Consensus       161 ~~  162 (166)
T cd00877         161 NP  162 (166)
T ss_pred             CC
T ss_conf             78


No 26 
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens)}
Probab=98.86   E-value=1.2e-07  Score=75.29  Aligned_columns=160  Identities=25%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|..++|||+|+.++.+   .+++....+.+|....+..+++  .-++.+|-..+...+..+.+..+..-.    .+
T Consensus         9 ivivG~~~vGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~--~i~l~~~d~~~~~~~~~~~~~~~~~~d----~~   82 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH--FVTMQIWDTAGQERFRSLRTPFYRGSD----CC   82 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE--EEEEEEEECCCCGGGHHHHGGGGTTCS----EE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEECEEEEEEEECCE--EEEEEEEECCCCCHHHHHHHEECCCCE----EE
T ss_conf             999817998789999998638135653331551105679999897--999998312473001021100126865----89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      ++|.|.+.|+++ +.++.|..-++.+.....                                                 
T Consensus        83 i~v~d~~~~~s~-~~i~~~~~~i~~~~~~~~-------------------------------------------------  112 (174)
T d1wmsa_          83 LLTFSVDDSQSF-QNLSNWKKEFIYYADVKE-------------------------------------------------  112 (174)
T ss_dssp             EEEEETTCHHHH-HTHHHHHHHHHHHHTCSC-------------------------------------------------
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHHCCCC-------------------------------------------------
T ss_conf             998635886789-999899999998710036-------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888-326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIY-TSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiY-TS~ke~knl~LLykYl~HrLy  305 (523)
                              .-++|+++|++|+|.     .+.....|+       ++.++-+++...+| ||++...|++-+...+..++.
T Consensus       113 --------~~~~piiivgnK~Dl-----~~~~v~~ee-------~~~~~~~~~~~~~~e~Sak~~~~I~e~f~~li~~il  172 (174)
T d1wmsa_         113 --------PESFPFVILGNKIDI-----SERQVSTEE-------AQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             --------TTTSCEEEEEECTTC-----SSCSSCHHH-------HHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             --------CCCCCEEEEECCCCC-----CCCCCCHHH-------HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             --------788528999514575-----435569899-------999999707982799860589888899999999995


No 27 
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens)}
Probab=98.86   E-value=3.1e-08  Score=79.36  Aligned_columns=160  Identities=21%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             588973699767899999742014688865-2145640450000432524636865862432455567870026664556
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVM  147 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVv  147 (523)
                      .|+++|..++|||||+.+|.+..-...... +...|..+.-+..+..-++.+|...|...+..+.+..+....    .++
T Consensus         8 ki~liG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~----~~i   83 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ----AAI   83 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCS----EEE
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCC----EEE
T ss_conf             8999817998799999998648015662442024543454555791799987306773011232155404652----899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55401013689999999999999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  148 LVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       148 IvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      +|.|.+.+.++ +.++.|+..++.+...                                                    
T Consensus        84 ~v~d~~~~~s~-~~~~~~~~~~~~~~~~----------------------------------------------------  110 (170)
T d1r2qa_          84 VVYDITNEESF-ARAKNWVKELQRQASP----------------------------------------------------  110 (170)
T ss_dssp             EEEETTCHHHH-HHHHHHHHHHHHHSCT----------------------------------------------------
T ss_pred             EEEECCCHHHH-HHHHHHHHHHHHHCCC----------------------------------------------------
T ss_conf             99625301468-9999999998750378----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                               .+|+++|++|+|.           .++..+-+.-++.|+-.+++-++.+|.+...+++-+..+|..+|+
T Consensus       111 ---------~~piilVgnK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~gi~elf~~l~~~i~  168 (170)
T d1r2qa_         111 ---------NIVIALSGNKADL-----------ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             ---------TCEEEEEEECGGG-----------GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             ---------CEEEEEEEEHHHH-----------HHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             ---------5577753200102-----------210477989999999955981899862689788899999999832


No 28 
>1xtq_A GTP-binding protein RHEB; beta saddle, P-loop; HET: GDP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86   E-value=1.6e-07  Score=74.47  Aligned_columns=157  Identities=19%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|..++|||||+.++..   .+.+....+..|...-..+   +...++.+|-..|...+..+.+..+..-.    .+
T Consensus         9 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~i~D~~g~~~~~~~~~~~~~~~d----~~   81 (177)
T 1xtq_A            9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVN---GQEYHLQLVDTAGQDEYSIFPQTYSIDIN----GY   81 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEET---TEEEEEEEEECCCCCTTCCCCGGGTSSCC----EE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCC---CEEEEEEEEECCCCCCCCCCCCCCCHHHH----HH
T ss_conf             899807998789999998627236664312320011210135---44566421001100011222332100033----32


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||.|++.|.++ +.++.|+.-+.++....++                                                
T Consensus        82 i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~------------------------------------------------  112 (177)
T 1xtq_A           82 ILVYSVTSIKSF-EVIKVIHGKLLDMVGKVQI------------------------------------------------  112 (177)
T ss_dssp             EEEEETTCHHHH-HHHHHHHHHHHHHHCSSCC------------------------------------------------
T ss_pred             HHHHCCCCCCCC-CHHCCHHHHHHHHCCCCCC------------------------------------------------
T ss_conf             110001112320-0001001221110035786------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                  |+++|++|+|.           .+...+-...++.||-++|..++.||.+.+.+++-+...|+..+.
T Consensus       113 ------------piiivgnK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~g~gi~elf~~ii~~i~  168 (177)
T 1xtq_A          113 ------------PIMLVGNKKDL-----------HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE  168 (177)
T ss_dssp             ------------CEEEEEECTTC-----------GGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             ------------CEEEEEECCCC-----------HHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ------------26999612573-----------000157888999999964982899861689788899999999999


No 29 
>cd04122 Rab14 Rab14 subfamily.  Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles.  Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments.  Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation.  In addition, Rab14 is believed to play a role in the regulation of phagocytosis.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.  Most Rab GT
Probab=98.86   E-value=4.9e-08  Score=78.04  Aligned_columns=159  Identities=19%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+++|+.++|||+|+.++...+-..+-.. ++..|....=.-.+..-++.+|=..|...+.+|.+..+.--+    .++|
T Consensus         5 ivviGd~~VGKTsli~r~~~~~f~~~~~~Ti~~~~~~k~i~~~~~~v~l~i~Dt~G~e~~~~~~~~~~~~a~----~~il   80 (166)
T cd04122           5 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAA----GALM   80 (166)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHCCCCC----EEEE
T ss_conf             999826995589999887638436445621022146788852890899998635886023455386426987----5999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |-|.+.+=++ +.+++|+.-++.+...                                                     
T Consensus        81 vydit~~~Sf-~~i~~w~~~~~~~~~~-----------------------------------------------------  106 (166)
T cd04122          81 VYDITRRSTY-NHLSSWLTDARNLTNP-----------------------------------------------------  106 (166)
T ss_pred             EEECCCHHHH-HHHHHHHHHHHHCCCC-----------------------------------------------------
T ss_conf             8207998789-9999999999740489-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              .+|+++|++|+|.           +++.++-..-.+.+|-++++..+.||+|.+.|++-+..++.-++|
T Consensus       107 --------~~~iilVGNK~DL-----------~~~r~v~~~e~~~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~  164 (166)
T cd04122         107 --------NTVIFLIGNKADL-----------EAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY  164 (166)
T ss_pred             --------CCEEEEECCHHHH-----------HHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             --------9579996372544-----------430354178999999964991999971589887899999999985


No 30 
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae)}
Probab=98.85   E-value=4.7e-08  Score=78.15  Aligned_columns=159  Identities=22%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             588973699767899999742014688865-2145640450000432524636865862432455567870026664556
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVM  147 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVv  147 (523)
                      .|+|+|..++|||||+.+|...+-...... ++..|....-...+....+.+|-..|...+..+.+..+..-.    .++
T Consensus         4 Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d----~~i   79 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAM----GII   79 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEE----EEE
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCCCC----EEE
T ss_conf             8999807998799999998648007762445411468889987584136887205783200001243326996----899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55401013689999999999999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  148 LVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       148 IvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      +|.|.+.|.++ +.+++|++.++.....                                                    
T Consensus        80 ~v~d~~~~~s~-~~~~~~~~~i~~~~~~----------------------------------------------------  106 (166)
T d1g16a_          80 LVYDITDERTF-TNIKQWFKTVNEHAND----------------------------------------------------  106 (166)
T ss_dssp             EEEETTCHHHH-HTHHHHHHHHHHHSCT----------------------------------------------------
T ss_pred             EEEECCCCCHH-HHHHHHHHHHHHCCCC----------------------------------------------------
T ss_conf             99851565338-8999999998612689----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                               .+|++||.+|+|    |+++.-..+|        ++.|+-+++...+-||++...+++-+...|.+.++
T Consensus       107 ---------~~piivv~nK~D----l~~~~v~~~e--------~~~~~~~~~~~~~e~Sa~~g~gv~~lf~~l~~~i~  163 (166)
T d1g16a_         107 ---------EAQLLLVGNKSD----METRVVTADQ--------GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ  163 (166)
T ss_dssp             ---------TCEEEEEEECTT----CTTCCSCHHH--------HHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ---------CCCEEEEEECHH----HHHCCCCHHH--------HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ---------851666763102----2200675889--------99999965993999961589888899999999999


No 31 
>cd01866 Rab2 Rab2 subfamily.  Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.  Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.84   E-value=1.6e-07  Score=74.40  Aligned_columns=157  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+.+...-+.+|....+.-  .+...++.+|-..|...+..|.+.-....+    .+
T Consensus         7 ivliGd~~VGKTsli~r~~~~~f~~~~~~Ti~~~~~~k~i~~--~~~~v~l~iwDt~G~e~~~~l~~~~~~~a~----~~   80 (168)
T cd01866           7 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DGKQIKLQIWDTAGQESFRSITRSYYRGAA----GA   80 (168)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCC--CCCEEEEEEEECCCCCCHHHHHHHHCCCCC----EE
T ss_conf             999816984389999998548257544530000001232146--784289998753888411245365347997----79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+=++ +.++.|++.++++.                                                     
T Consensus        81 iivfdvt~~~Sf-~~i~~w~~~~~~~~-----------------------------------------------------  106 (168)
T cd01866          81 LLVYDITRRETF-NHLTSWLEDARQHS-----------------------------------------------------  106 (168)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHC-----------------------------------------------------
T ss_conf             999766997789-99999999999736-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              +-.+|+++|.+|+|    |+.++....++       .+.+|-++|+..+-||+|...|++-+...+.-.+|
T Consensus       107 --------~~~~piilVGnK~D----L~~~r~v~~~e-------~~~~a~~~~~~~~E~SAkt~~nV~~~F~~la~~i~  166 (168)
T cd01866         107 --------NSNMTIMLIGNKCD----LESRREVSYEE-------GEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIY  166 (168)
T ss_pred             --------CCCCEEEEEECCHH----HHHHCCCCHHH-------HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             --------99968999833201----23304776889-------99999965984999861579887899999999997


No 32 
>e1z0fa_ c.37.1.8 (A:) Rab14 {Human (Homo sapiens) [TaxID:9606]} SCOP: u2aeda1
Probab=98.84   E-value=8.4e-08  Score=76.40  Aligned_columns=159  Identities=19%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|+.++|||||+.++.+-+-...... .+..+....-........+.+|-..|......+.+..+..-.    .+++
T Consensus         8 i~ivG~~~vGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~i~d~~g~~~~~~~~~~~~~~~d----~~i~   83 (167)
T e1z0fa_           8 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA----GALM   83 (167)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHCCCCC----EEEE
T ss_conf             999817997799999998648235665412443320168987793257877216773012121032236886----7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|++.+ .-.+.+.+|..-++.+...                                                     
T Consensus        84 v~d~~~~-~s~~~~~~~~~~~~~~~~~-----------------------------------------------------  109 (167)
T e1z0fa_          84 VYDITRR-STYNHLSSWLTDARNLTNP-----------------------------------------------------  109 (167)
T ss_pred             EEECCCC-HHHHHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_conf             9852774-0289999888889886178-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              .+|++||++|+|.           +++-++..+-++.+|-.+|+.++.||++...|++=+..-+..++|
T Consensus       110 --------~~~iiiv~nK~Dl-----------~~~~~i~~~e~~~~~~~~~~~~~e~Sa~~g~gi~elf~~i~~~iy  167 (167)
T e1z0fa_         110 --------NTVIILIGNKADL-----------EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY  167 (167)
T ss_pred             --------CCEEEEEEECCHH-----------HHCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             --------7258875211021-----------000243178999999964982999962689888899999999719


No 33 
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
Probab=98.83   E-value=5e-08  Score=77.96  Aligned_columns=158  Identities=18%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCC-CCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             8897369976789999974201-468886521456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIE-EYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e-~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|+.++|||+|+.++...+ .......++..+....-......-++.+|-..|...+..+.+..+..-.    .+++
T Consensus         9 v~viG~~~vGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~----~~i~   84 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ----AAIV   84 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCS----EEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC----EEEE
T ss_conf             999817997789999998648015543540011100122147884689987215563201133267523775----4899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|...|+++ +.+.+|+..++.+.                                                       
T Consensus        85 v~d~~~~~s~-~~~~~~~~~i~~~~-------------------------------------------------------  108 (170)
T 1r2q_A           85 VYDITNEESF-ARAKNWVKELQRQA-------------------------------------------------------  108 (170)
T ss_dssp             EEETTCHHHH-HHHHHHHHHHHHHS-------------------------------------------------------
T ss_pred             EEECCCCCCC-HHHHHHHHHHHHHH-------------------------------------------------------
T ss_conf             8405555343-01445566553320-------------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                            +..+|+++|.+|+|..           ++..+-++-++.||-++++..+.||++...|++-+...|..++
T Consensus       109 ------~~~~piilvgnK~Dl~-----------~~~~v~~~~~~~~a~~~~~~~~~~Sak~g~~i~elf~~l~~~i  167 (170)
T 1r2q_A          109 ------SPNIVIALSGNKADLA-----------NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             ------CTTCEEEEEEECGGGG-----------GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             ------CCCCCEEECCCCCCHH-----------HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             ------3782244134643013-----------3431024444357886596289986278978889999999996


No 34 
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.53A {Homo sapiens}
Probab=98.83   E-value=2.9e-07  Score=72.72  Aligned_columns=170  Identities=24%

Q ss_pred             CCCCCCCCCCE----EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCC
Q ss_conf             44542578765----88973699767899999742014688865-21456404500004325246368658624324555
Q Ver_Hs_NP_0572   59 RSRSKLPAGKN----VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLK  133 (523)
Q Consensus        59 ~~~~klp~~Kn----ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK  133 (523)
                      ++..-.|.|..    |+|+|+.++|||||+.+|..-.-...-.. .+..+....-...+....+.+|-..|...+..+..
T Consensus        10 ~~~~~~p~~~d~~~KI~iiG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~i~D~~g~~~~~~~~~   89 (189)
T 2gf9_A           10 HSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT   89 (189)
T ss_dssp             ----CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCEEEEEEECCEEEEEEEECCCCCCHHHHHHH
T ss_conf             45688988867258999981799878999999864803645242100121024454211589998840677421345558


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             67870026664556554010136899999999999999997327898899999999999999850455566665534456
Q Ver_Hs_NP_0572  134 FSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNT  213 (523)
Q Consensus       134 ~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~  213 (523)
                      ......+    .++||.|++.+.++ +.+++|+..++.......                                    
T Consensus        90 ~~~~~~~----~~iivfd~~~~~S~-~~~~~~~~~~~~~~~~~~------------------------------------  128 (189)
T 2gf9_A           90 AYYRGAM----GFLLMYDIANQESF-AAVQDWATQIKTYSWDNA------------------------------------  128 (189)
T ss_dssp             GGGTTCS----EEEEEEETTCHHHH-HTHHHHHHHHHHHSCTTC------------------------------------
T ss_pred             HHCCCCE----EEEEEEECCCCHHH-HHHHHHHCCCCCCCCCCE------------------------------------
T ss_conf             7605971----89999850330123-333210000010224662------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHH
Q ss_conf             76667765344788876230058832799850741255554205774789999999999999971876888326636789
Q Ver_Hs_NP_0572  214 ASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNI  293 (523)
Q Consensus       214 ~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl  293 (523)
                                               |++||++|+|    |.+++.-..++       ++.|+-+++..++.||++.+.|+
T Consensus       129 -------------------------piiivgnK~D----l~~~~~v~~~e-------~~~~a~~~~~~~~e~Sa~~~~gI  172 (189)
T 2gf9_A          129 -------------------------QVILVGNKCD----LEDERVVPAED-------GRRLADDLGFEFFEASAKENINV  172 (189)
T ss_dssp             -------------------------EEEEEEECTT----CGGGCCSCHHH-------HHHHHHHHTCEEEECBTTTTBSH
T ss_pred             -------------------------EEEEECCCCC----CHHHHHHHHHH-------HHHHHHHCCCCEEEEECCCCCCH
T ss_conf             -------------------------4775013232----01232001789-------99999965991899962689788


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999998760
Q Ver_Hs_NP_0572  294 DLVYKYIVQKLY  305 (523)
Q Consensus       294 ~LLykYl~HrLy  305 (523)
                      +.+...|...+.
T Consensus       173 ~elf~~i~~~i~  184 (189)
T 2gf9_A          173 KQVFERLVDVIC  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 35 
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=98.83   E-value=7.6e-08  Score=76.71  Aligned_columns=159  Identities=23%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|+.++|||+|+.++..-+-...-.. ++..+....=...+..-.+.+|-..|...+..|.+..+.--+    .++|
T Consensus         2 i~viG~~~vGKTsli~r~~~~~f~~~~~~Ti~~~~~~k~v~~~~~~~~l~i~Dt~g~e~~~~~~~~~~~~ad----~~il   77 (162)
T pfam00071         2 LVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRSLRPAYYRGAQ----GFLL   77 (162)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHCCCCC----EEEE
T ss_conf             788817996689999998638327654420101578999987367999999866998013567586504898----8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |-|++.. .=++.+++|+..++.+...                                                     
T Consensus        78 vfd~~~~-~Sf~~i~~w~~~i~~~~~~-----------------------------------------------------  103 (162)
T pfam00071        78 VYDITSR-DSFENVKKWLEEILRHADE-----------------------------------------------------  103 (162)
T ss_pred             EEECCCH-HHHHHHHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             9877997-8999999999999984599-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              .+|+++|++|+|.           ++...+-.+-.+.||-++++..+.||++...|++-+...|.-+|+
T Consensus       104 --------~~piilvgnK~Dl-----------~~~~~i~~~e~~~~~~~~~~~y~e~Sak~g~gI~e~F~~l~~~i~  161 (162)
T pfam00071       104 --------NVPIVLVGNKCDL-----------EDQRVVSTEEGEALAKELGLPFMETSAKTNTNVEEAFEELAREIL  161 (162)
T ss_pred             --------CCEEEEEEECCHH-----------HHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             --------9489998504201-----------121167688999999964995999971479888899999999980


No 36 
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82   E-value=3.3e-08  Score=79.21  Aligned_columns=167  Identities=25%

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             57876588973699767899999742014688865-21456404500004325246368658624324555678700266
Q Ver_Hs_NP_0572   64 LPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLK  142 (523)
Q Consensus        64 lp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~  142 (523)
                      +|+ -.|+|+|..++|||||+.++.+.+....... .+..+....-...+...++.+|-..|...+..+.+..+..-.  
T Consensus        13 ~~~-~KI~viG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~--   89 (195)
T 1x3s_A           13 LTT-LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ--   89 (195)
T ss_dssp             EEE-EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC--
T ss_pred             CCE-EEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHCCCC--
T ss_conf             451-56899806998799999998658136553320221125788888787889885003220022334377722588--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64556554010136899999999999999997327898899999999999999850455566665534456766677653
Q Ver_Hs_NP_0572  143 DTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDS  222 (523)
Q Consensus       143 ~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~  222 (523)
                        .++||.|++.+.++-. +..|+..++                                                    
T Consensus        90 --~~i~v~d~~~~~S~~~-~~~~~~~i~----------------------------------------------------  114 (195)
T 1x3s_A           90 --GVILVYDVTRRDTFVK-LDNWLNELE----------------------------------------------------  114 (195)
T ss_dssp             --EEEEEEETTCHHHHHT-HHHHHHHHT----------------------------------------------------
T ss_pred             --CEEEEEECCCCCCHHH-HHHHHHHHH----------------------------------------------------
T ss_conf             --1289972367410112-478887665----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             44788876230058832799850741255554205774789999999999999971876888326636789999999998
Q Ver_Hs_NP_0572  223 VVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQ  302 (523)
Q Consensus       223 v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~H  302 (523)
                              ..-.+..+|++||++|+|.            ++..+..+-++.|+-+++..++++|++...+++-+...|..
T Consensus       115 --------~~~~~~~~piiiv~nK~Dl------------~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~i~~  174 (195)
T 1x3s_A          115 --------TYCTRNDIVNMLVGNKIDK------------ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE  174 (195)
T ss_dssp             --------TCCSCSCCEEEEEEECTTS------------SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             --------HHCCCCCCEEEEECCCCCH------------HHCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             --------4101245306774265200------------11010178999999962987999851678788899999999


Q ss_pred             HHCCCC
Q ss_conf             760655
Q Ver_Hs_NP_0572  303 KLYGFP  308 (523)
Q Consensus       303 rLygfp  308 (523)
                      .++.-+
T Consensus       175 ~i~~~~  180 (195)
T 1x3s_A          175 KIIQTP  180 (195)
T ss_dssp             HHHTSG
T ss_pred             HHHHCC
T ss_conf             997445


No 37 
>d1oiva_ c.37.1.8 (A:) Rab11a {Human (Homo sapiens)}
Probab=98.82   E-value=1.2e-07  Score=75.44  Aligned_columns=159  Identities=21%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|+.++|||||+.+|.+.+-..+... .+..+....-...+..-.+.+|-..|...+..+.+..+..-..    ++|
T Consensus         9 i~ivG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~----~i~   84 (168)
T d1oiva_           9 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVG----ALL   84 (168)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEECSCCCCHHHHHHHHTTEEE----EEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCE----EEE
T ss_conf             9998369987999999986580343655326533422789988948999985067830123555776227878----999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.+ .-++.+.+|+.-++.......                                                   
T Consensus        85 v~d~~~~-~s~~~i~~~~~~i~~~~~~~~---------------------------------------------------  112 (168)
T d1oiva_          85 VYDIAKH-LTYENVERWLKELRDHADSNI---------------------------------------------------  112 (168)
T ss_dssp             EEETTCH-HHHHTHHHHHHHHHHHSCTTC---------------------------------------------------
T ss_pred             EEEECCC-CHHHHHHHHHHHHHHHCCCCE---------------------------------------------------
T ss_conf             9984263-016889999999986148953---------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                |++||++|+|    |+++..-..|+       .|.||-++++..+.||+|...|++-+...|..++|
T Consensus       113 ----------piiivgnK~D----l~~~~~v~~~~-------~~~~~~~~~~~~~e~Sak~g~~i~e~f~~ii~~i~  168 (168)
T d1oiva_         113 ----------VIMLVGNKSD----LRHLRAVPTDE-------ARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY  168 (168)
T ss_dssp             ----------EEEEEEECTT----CGGGCCSCHHH-------HHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             ----------EEEEEEECCC----HHHCCCCCHHH-------HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             ----------8996110001----22203779899-------99999963993899971689787899999999709


No 38 
>e2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxID:9606]} SCOP: u2atxb_
Probab=98.81   E-value=8.6e-08  Score=76.32  Aligned_columns=171  Identities=16%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             58897369976789999974201468886521456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      +|+|+|+.++|||||+.++.+.+-..+..+....+....-...+..-.+.+|-..|...+..+.+..+..-.    +++|
T Consensus        11 ki~viG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d----~~i~   86 (185)
T e2atxa1          11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD----VFLI   86 (185)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCE----EEEE
T ss_conf             999980699889999999863832676355168888899987396489998505573112333454314342----5678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.|++|-.-.+.|+..++.+-                                                       
T Consensus        87 v~D~~~~~S~~~~~~~~~~~~~~~~-------------------------------------------------------  111 (185)
T e2atxa1          87 CFSVVNPASFQNVKEEWVPELKEYA-------------------------------------------------------  111 (185)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_conf             8743574027887788899998607-------------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHCCEEEE-ECCCCHHHHHHHHHHHHHHHC
Q ss_conf             7623005883279985074125555420577478-9999999999999971876888-326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDE-HFDFFQSHIRKFCLRYGAALIY-TSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE-~fDfIqq~LR~icL~YGAaLiY-TS~ke~knl~LLykYl~HrLy  305 (523)
                             -.+|++||.+|+|..+.-..+...+++ +..+-++..+.+|-++|+-.++ ||++...|++=+...+.....
T Consensus       112 -------~~~piiivgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~t~~gi~e~fe~~i~~~l  183 (185)
T e2atxa1         112 -------PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_pred             -------CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             -------970799997235876512466655441146678899999999708913788750578787899999999960


No 39 
>cd04119 RJL RJL (RabJ-Like) subfamily.  RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa.  RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.81   E-value=1.7e-07  Score=74.28  Aligned_columns=162  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+++...-+.+|....|.-+++.  .++.+|=..|...+..+.+....--+    .+
T Consensus         3 ivivGd~~vGKTsli~r~~~~~f~~~y~~Tig~~~~~k~i~~~~~~--~~l~iwDtaG~e~~~~~~~~~~~~a~----~~   76 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKE--VRVNFFDLSGHPEYLEVRNEFYKDTQ----GV   76 (168)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEE--EEEEEEECCCCHHHHHHHHHHHCCCC----EE
T ss_conf             8998079854899998877180166536503555556788887948--99998606898125788788723999----38


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+.++-. +++|+.-++.+.....                                                 
T Consensus        77 ilvydit~~~Sf~~-i~~w~~~~~~~~~~~~-------------------------------------------------  106 (168)
T cd04119          77 LLVYDVTDRQSFEA-LDSWLKEMKQEGGPHG-------------------------------------------------  106 (168)
T ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHHCCCCC-------------------------------------------------
T ss_conf             99985699778999-9999999998605556-------------------------------------------------


Q ss_pred             CCCCCCCCCCC-CCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             88762300588-32799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLG-IPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLG-iPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              +.. +|+++|.+|+|    |...+.-..++       .+.+|-++|+..|.||+|...|++.+..+|+..+.
T Consensus       107 --------~~~~~~iilvGNK~D----l~~~r~V~~~~-------~~~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~  167 (168)
T cd04119         107 --------NMENIVVVVCANKID----LTKHRAVSEDE-------GRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             --------CCCCCEEEEEECCCC----CCCCCCCCHHH-------HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             --------668747999705323----32357679899-------99999964991999971589787899999999855


Q ss_pred             C
Q ss_conf             6
Q Ver_Hs_NP_0572  306 G  306 (523)
Q Consensus       306 g  306 (523)
                      .
T Consensus       168 d  168 (168)
T cd04119         168 D  168 (168)
T ss_pred             C
T ss_conf             9


No 40 
>e1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxID:9606]} SCOP: u1z08d_ u1yzta1 u1yzua_
Probab=98.81   E-value=5e-08  Score=77.98  Aligned_columns=156  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|..++|||+|+.+|.+   .+.+....+.++....+..+++  .-++.+|-..|...+..+.+......+    .+
T Consensus         6 i~ivG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~d~~g~~~~~~~~~~~~~~~~----~~   79 (167)
T e1z08a1           6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK--RVNLAIWDTAGQERFHALGPIYYRDSN----GA   79 (167)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCE--EEEEEEECCCCCHHHHHHHHHHHHCCC----CE
T ss_conf             999827998799999998658015663440342024479988887--999998425571355677676530001----02


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      ++|.|.+.++++ +.+.+|+..++.....                                                   
T Consensus        80 i~v~d~~~~~s~-~~i~~~~~~i~~~~~~---------------------------------------------------  107 (167)
T e1z08a1          80 ILVYDITDEDSF-QKVKNWVKELRKMLGN---------------------------------------------------  107 (167)
T ss_pred             EEEEECCCCCCH-HHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             555302245657-8999999998752146---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                ++|++||++|+|.           +++.++-+..++.++-.+++..|.||.+...|++-+...|..++
T Consensus       108 ----------~~piiivgnK~Dl-----------~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~i~~~i  164 (167)
T e1z08a1         108 ----------EICLCIVGNKIDL-----------EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_pred             ----------CCCEEEEEECCCC-----------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             ----------7422567623345-----------54556798999999997399389996158978889999999997


No 41 
>e1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxID:10090]} SCOP: u1x1sa_
Probab=98.80   E-value=5.2e-08  Score=77.82  Aligned_columns=164  Identities=17%

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             57876588973699767899999742014688865214564045000043252463686586243245556787002666
Q Ver_Hs_NP_0572   64 LPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKD  143 (523)
Q Consensus        64 lp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~  143 (523)
                      ||+ =-|+|+|+.++|||||+.++..-.-........-......-...+..-.+.+|-..|...+..+.+..+..-+   
T Consensus         2 ~~~-~Ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~---   77 (169)
T e1x1ra1           2 LPT-YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD---   77 (169)
T ss_pred             CCE-EEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECCEEEEEECCEEEEEEEEEECCCCCCHHHHHHHCCCCE---
T ss_conf             974-8899982699878999999862723766564200021158997133778778760576532023587606975---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             45565540101368999999999999999973278988999999999999998504555666655344567666776534
Q Ver_Hs_NP_0572  144 TLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSV  223 (523)
Q Consensus       144 TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v  223 (523)
                       .++||.|++.++++-. +.+|+..+......-.+                                             
T Consensus        78 -~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~---------------------------------------------  110 (169)
T e1x1ra1          78 -GFLIVYSVTDKASFEH-VDRFHQLILRVKDRESF---------------------------------------------  110 (169)
T ss_pred             -EEEEEEECCCCCCCCC-CHHHHHHHHHHCCCCCC---------------------------------------------
T ss_conf             -8999853341000120-00467888753176876---------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHH-HHHHHHHHHHH
Q ss_conf             47888762300588327998507412555542057747899999999999999718768883266367-89999999998
Q Ver_Hs_NP_0572  224 VVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENK-NIDLVYKYIVQ  302 (523)
Q Consensus       224 ~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~k-nl~LLykYl~H  302 (523)
                                     |++||++|+|..           ++..+.++.++.||-++++..+.||+|... |++-+...|++
T Consensus       111 ---------------piilvgnK~Dl~-----------~~~~v~~~e~~~~~~~~~~~~~e~SAk~~~~nv~~~f~~l~~  164 (169)
T e1x1ra1         111 ---------------PMILVANKVDLM-----------HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR  164 (169)
T ss_pred             ---------------CEEEEEECCCHH-----------HCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             ---------------179995156810-----------216669899999999659959999614588697899999999


Q ss_pred             HH
Q ss_conf             76
Q Ver_Hs_NP_0572  303 KL  304 (523)
Q Consensus       303 rL  304 (523)
                      .+
T Consensus       165 ~i  166 (169)
T e1x1ra1         165 VI  166 (169)
T ss_pred             HH
T ss_conf             99


No 42 
>cd04106 Rab23_lke Rab23-like subfamily.  Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina.  Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system.  GTPase activating proteins (GAPs) interact with G
Probab=98.80   E-value=6.2e-08  Score=77.29  Aligned_columns=156  Identities=28%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+++...-|.+|.--.|.-+++...-++.+|-..|...+..|.+....--+    .+
T Consensus         3 i~~iGd~~vGKTsli~r~~~~~f~~~~~~Tig~~~~~k~v~v~~~~~~v~l~iwDt~g~e~~~~~~~~~~~~~~----~~   78 (162)
T cd04106           3 VIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQ----AC   78 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHCCCCC----EE
T ss_conf             89980798448999999862822755564101046777899700884799998718888003455376414897----89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+.++ +.++.|..-+++....                                                   
T Consensus        79 llvydvt~~~Sf-~~i~~w~~~i~~~~~~---------------------------------------------------  106 (162)
T cd04106          79 ILVFSTTDRESF-EAIESWKEKVEAECGD---------------------------------------------------  106 (162)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             999866997899-9999999999985499---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             88762300588327998507412555542057747899999999999999718768883266367899999999987
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQK  303 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~Hr  303 (523)
                                 +|+++|.+|+|..           ++..+..+-.+.+|-++++..+.||+|.+.|++-+.++|.-+
T Consensus       107 -----------~p~ilVGNK~Dl~-----------~~~~vs~~~~~~~a~~~~~~~~E~SAk~~~nV~e~F~~la~k  161 (162)
T cd04106         107 -----------IPMVLVQTKIDLL-----------DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             -----------CEEEEEECCCCCC-----------CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             -----------3799982142321-----------246589899999999669959999715898878999999850


No 43 
>cd00876 Ras Ras family.  The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins.  Ras proteins regulate cell growth, proliferation and differentiation.  Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding.  Many RasGEFs have been identified.  These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras.  Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1.  Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid.  Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.79   E-value=6.3e-08  Score=77.28  Aligned_columns=159  Identities=21%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88973699767899999742014688865214564045000043252463686586243245556787002666455655
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLV  149 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIv  149 (523)
                      |+++|+.++|||+|+.++..-+-...-..---.+....-...+..-++.+|-..|...+..+.+..+.--+    .++||
T Consensus         2 i~~iGd~~vGKTsli~r~~~~~f~~~~~~ti~~~~~k~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~----~~iiv   77 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGD----GFILV   77 (160)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCC----EEEEE
T ss_conf             78880799668999999872810675354200226778888482899998635884133468887640461----78999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40101368999999999999999973278988999999999999998504555666655344567666776534478887
Q Ver_Hs_NP_0572  150 VDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGA  229 (523)
Q Consensus       150 lDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLge  229 (523)
                      -|.+.+.++ +.+++|+.-+++....-++                                                   
T Consensus        78 fdi~~~~Sf-~~i~~w~~~i~~~~~~~~~---------------------------------------------------  105 (160)
T cd00876          78 YSITDRESF-EEIKGYREQILRVKDDEDI---------------------------------------------------  105 (160)
T ss_pred             EECCCHHHH-HHHHHHHHHHHHHCCCCCC---------------------------------------------------
T ss_conf             866997799-9999999999985389996---------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  230 DTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       230 g~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                               |+++|++|+|..           ++..+-.+-.+.||-++++..+.||+|.+.|++-+...|.-.+
T Consensus       106 ---------piilvgNK~Dl~-----------~~r~v~~~e~~~~a~~~~~~~~e~Sak~~~nV~~~F~~i~~~i  160 (160)
T cd00876         106 ---------PIVLVGNKCDLE-----------NERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             ---------EEEEEECCCCCH-----------HHCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC
T ss_conf             ---------799982132630-----------0116768899999996499699997048988889999999829


No 44 
>e2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxID:9606]} SCOP: u2f7sb_
Probab=98.79   E-value=1.3e-07  Score=75.09  Aligned_columns=161  Identities=20%

Q ss_pred             EEEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEEC--------CCHHCCHHHHCCEEEECCCCCCCCCCCCCCC
Q ss_conf             588973699767899999742---01468886521456404--------5000043252463686586243245556787
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNV--------HDEDRDDQTRCNVWILDGDLYHKGLLKFSLD  137 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V--------~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt  137 (523)
                      .|+|+|..++|||||+.+|.+   .+.+....+.+|....+        ...+......+++|-..+...+..+.+..+.
T Consensus         7 ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (186)
T e2f7sa1           7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFR   86 (186)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEECCCEEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf             99998179987999999986581166514543013579999986755200001440589998762102332101022200


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             00266645565540101368999999999999999973278988999999999999998504555666655344567666
Q Ver_Hs_NP_0572  138 AVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQE  217 (523)
Q Consensus       138 ~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~  217 (523)
                      .-.    .+++|.|.+.++++-+ +..|+.-+..+...-.+                                       
T Consensus        87 ~~d----~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~---------------------------------------  122 (186)
T e2f7sa1          87 DAM----GFLLMFDLTSQQSFLN-VRNWMSQLQANAYCENP---------------------------------------  122 (186)
T ss_pred             CCC----EEEEECCCCCCCCHHH-HHHHHHHHHHHCCCCCC---------------------------------------
T ss_conf             435----4898303456555678-98999999985067996---------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHH
Q ss_conf             77653447888762300588327998507412555542057747899999999999999718768883266367899999
Q Ver_Hs_NP_0572  218 DKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVY  297 (523)
Q Consensus       218 ~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLy  297 (523)
                                           |++||++|+|..           +...+..+.++.|+-++|...+.||++...|++-+.
T Consensus       123 ---------------------piiiv~nK~Dl~-----------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~e~f  170 (186)
T e2f7sa1         123 ---------------------DIVLIGNKADLP-----------DQREVNERQARELADKYGIPYFETSAATGQNVEKAV  170 (186)
T ss_pred             ---------------------EEEEEECCCCCC-----------CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             ---------------------489974054422-----------124779899999999649939999626896888999


Q ss_pred             HHHHHHHC
Q ss_conf             99998760
Q Ver_Hs_NP_0572  298 KYIVQKLY  305 (523)
Q Consensus       298 kYl~HrLy  305 (523)
                      ..|...+.
T Consensus       171 ~~l~~~i~  178 (186)
T e2f7sa1         171 ETLLDLIM  178 (186)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 45 
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78   E-value=4.8e-08  Score=78.10  Aligned_columns=180  Identities=17%

Q ss_pred             CCCCCCCCCC-----EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCC
Q ss_conf             4454257876-----58897369976789999974201468886521456404500004325246368658624324555
Q Ver_Hs_NP_0572   59 RSRSKLPAGK-----NVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLK  133 (523)
Q Consensus        59 ~~~~klp~~K-----nILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK  133 (523)
                      .+|+.+.++-     .|+|+|+.++|||+|+.+|..-.-..........+..+.-...+..-.+++|-..|...+..+.+
T Consensus         5 ~~~~~~~~~~~~~~iKi~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~D~~g~~~~~~~~~   84 (194)
T 2atx_A            5 AGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP   84 (194)
T ss_dssp             ----CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG
T ss_pred             CCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCHHHHH
T ss_conf             77742335865327889998179987899999986384377535416543445665349448887612532100001233


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             67870026664556554010136899999999999999997327898899999999999999850455566665534456
Q Ver_Hs_NP_0572  134 FSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNT  213 (523)
Q Consensus       134 ~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~  213 (523)
                      ..+..-.    .++||.|++.++++-.-+++|+..++.+...                                      
T Consensus        85 ~~~~~~~----~~ilV~d~~~~~sf~~~~~~~~~~~~~~~~~--------------------------------------  122 (194)
T 2atx_A           85 LSYPMTD----VFLICFSVVNPASFQNVKEEWVPELKEYAPN--------------------------------------  122 (194)
T ss_dssp             GGCTTCS----EEEEEEETTCHHHHHHHHHTHHHHHHHHSTT--------------------------------------
T ss_pred             HHHCCCE----EEECCCCCCHHHHHHHHHHHHHHHHHHCCCC--------------------------------------
T ss_conf             3202010----0200000104678888888766666530678--------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHCCEEEE-ECCCCHH
Q ss_conf             766677653447888762300588327998507412555542057747-89999999999999971876888-3266367
Q Ver_Hs_NP_0572  214 ASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRD-EHFDFFQSHIRKFCLRYGAALIY-TSVKENK  291 (523)
Q Consensus       214 ~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~d-E~fDfIqq~LR~icL~YGAaLiY-TS~ke~k  291 (523)
                                              +|+++|.+|+|..+.-+....+.+ ....+.....+++|-++|+..+| ||++...
T Consensus       123 ------------------------~~iilVgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~e~Sak~~~  178 (194)
T 2atx_A          123 ------------------------VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQK  178 (194)
T ss_dssp             ------------------------CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCT
T ss_pred             ------------------------CCEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             ------------------------53799862645554303677765520256378999999997189227897504887


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8999999999876
Q Ver_Hs_NP_0572  292 NIDLVYKYIVQKL  304 (523)
Q Consensus       292 nl~LLykYl~HrL  304 (523)
                      |++-+..++...+
T Consensus       179 ~I~~~f~~li~~i  191 (194)
T 2atx_A          179 GLKTVFDEAIIAI  191 (194)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             8889999999997


No 46 
>cd04101 RabL4 RabL4 (Rab-like4) subfamily.  RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like.  As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus.  The specific function of RabL4 remains unknown.
Probab=98.78   E-value=9.9e-08  Score=75.91  Aligned_columns=157  Identities=17%

Q ss_pred             EEEEECCCCCHHHHHHHHHHC-----CCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             889736997678999997420-----146888652145640450000432524636865862432455567870026664
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGI-----EEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDT  144 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~-----e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~T  144 (523)
                      |+++|+.++|||+|+.++...     +.+...-+.+|..-.+.=.+.+ .-.+.+|=..|...+..+.+.-..--+    
T Consensus         3 vv~iGd~~VGKTsli~~~~~~~~~f~~~y~~T~~~~~~~~~~~i~~~~-~~~l~i~DtaGqe~~~~~~~~~~~~a~----   77 (164)
T cd04101           3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDN-TVELFIFDSAGQELYSDMVSNYWESPS----   77 (164)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCEECCCCCCCEEEEEEEEEEEECCCC-EEEEEEEECCCCHHHHHHHHHHCCCCC----
T ss_conf             899807982189888877616844166654311245679999977996-799999603872246788787424997----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55655401013689999999999999999732789889999999999999985045556666553445676667765344
Q Ver_Hs_NP_0572  145 LVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVV  224 (523)
Q Consensus       145 LVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~  224 (523)
                      .++||-|.+.+.++ +.+.+|+.-++.+-                                                   
T Consensus        78 ~~ilvydit~~~Sf-~~i~~w~~~i~~~~---------------------------------------------------  105 (164)
T cd04101          78 VFILVYDVSNKASF-ENCSRWVNKVRTAS---------------------------------------------------  105 (164)
T ss_pred             EEEEEEECCCHHHH-HHHHHHHHHHHHHC---------------------------------------------------
T ss_conf             69999417997689-99999999999844---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             78887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  225 VPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       225 lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                 -.+|+++|++|+|.           .++..+-..-.|.+|-.+++..+.||+|...|++.+...|.-..
T Consensus       106 -----------~~~p~ilVGNK~DL-----------~~~r~V~~~~~~~~a~~~~~~~~e~SAktg~nV~e~F~~lar~~  163 (164)
T cd04101         106 -----------KHMPGVLVGNKMDL-----------ADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             -----------CCCEEEEEECCCCC-----------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             -----------99739998214340-----------01167898999999996399499997168988789999999972


Q ss_pred             C
Q ss_conf             0
Q Ver_Hs_NP_0572  305 Y  305 (523)
Q Consensus       305 y  305 (523)
                      +
T Consensus       164 ~  164 (164)
T cd04101         164 H  164 (164)
T ss_pred             C
T ss_conf             9


No 47 
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily.  Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice.  This isoform is associated with membrane ruffles and promotes macropinosome formation.  Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further re
Probab=98.77   E-value=1.1e-07  Score=75.56  Aligned_columns=163  Identities=18%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+++|+.++|||+|+.|+..-+-..+-.. ++.-|..-.=.-.+..-.+.+|=..|...+.++.+....--+    .+||
T Consensus         3 ivliGd~~VGKTsli~rf~~~~f~~~y~~Tig~d~~~k~~~~~~~~i~l~iwDtaG~e~~~~~~~~~~~~a~----~~il   78 (170)
T cd04108           3 VIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQ----AIII   78 (170)
T ss_pred             EEEEECCCCCHHHHHHHHHCCEECCCCCCEEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHCCCCC----EEEE
T ss_conf             899816985489988887628227862442566788998751883799998536886024566675404888----0899


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             540101368999999999-9999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWA-SVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi-~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      |-|.+.+.++ +.+++|+ .+++.+-.+                                                    
T Consensus        79 vyDit~~~Sf-~~~~~w~~~~~~~~~~~----------------------------------------------------  105 (170)
T cd04108          79 VFDLTDVASL-EHTRQWLEDALKENDPS----------------------------------------------------  105 (170)
T ss_pred             EEECCCHHHH-HHHHHHHHHHHHHHCCC----------------------------------------------------
T ss_conf             9754986578-99999999998740799----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             87623005883279985074125555420577478999999999999997187688832663678999999999876065
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYGF  307 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLygf  307 (523)
                               .+|+++|.+|+|..+         .++..++.+.-+.++-++|+..|.||+|.+.|++-+...|.-.+|.+
T Consensus       106 ---------~~~i~LVGnK~DL~~---------~~~~~~~~~~~~~~a~~~~~~~fEtSAktg~nV~e~F~~ia~~~~~~  167 (170)
T cd04108         106 ---------SVLLFLVGTKKDLSS---------PAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFEL  167 (170)
T ss_pred             ---------CCEEEEEECCCCCCC---------CCCCEECHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             ---------968999835601045---------31120037899999996599599997258878789999999999850


No 48 
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome dynamics; HET: GDP; 2.5A {Homo sapiens}
Probab=98.77   E-value=3.7e-08  Score=78.83  Aligned_columns=188  Identities=19%

Q ss_pred             HHHHHHHHCCCCCCCCCCCE--EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCC
Q ss_conf             99998864144542578765--8897369976789999974201468886521456404500004325246368658624
Q Ver_Hs_NP_0572   50 SCILSEVSTRSRSKLPAGKN--VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLY  127 (523)
Q Consensus        50 ssiL~~v~t~~~~klp~~Kn--ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~  127 (523)
                      ..++...+-..+  .|.-+.  |+|+|..++||||||.+|..-+-........-.+....=.-.+..-++.+|-..|...
T Consensus        17 ~~~~~~~~~~~~--~~~~r~iKI~iiG~~gvGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iwD~~g~~~   94 (214)
T 2j1l_A           17 NLYFQSMAGEEA--PPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD   94 (214)
T ss_dssp             -----------------CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             CCHHHHCCCCCC--CCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCHHH
T ss_conf             210222132247--777763789987079977999999986373367646501357899986468478741035650112


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             32455567870026664556554010136899999999999999997327898899999999999999850455566665
Q Ver_Hs_NP_0572  128 HKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPAS  207 (523)
Q Consensus       128 ~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s  207 (523)
                      +..+.+..+..-.    .|++|.|++.|+++-.-.+.|...++....                                 
T Consensus        95 ~~~~~~~~~~~~~----~iilV~d~~~~~s~~~~~~~~~~~~~~~~~---------------------------------  137 (214)
T 2j1l_A           95 YDRLRPLFYPDAS----VLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---------------------------------  137 (214)
T ss_dssp             ----------CEE----EEEEEEETTCHHHHHHHHHTHHHHHHHHCS---------------------------------
T ss_pred             HHHHHHHHCCCCE----EEEEEECCCCHHHHHHHHHHHHHHHHHHCC---------------------------------
T ss_conf             1001022204404----566531133003344444678999986248---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHCCEEEE-E
Q ss_conf             534456766677653447888762300588327998507412555542057747899999-99999999971876888-3
Q Ver_Hs_NP_0572  208 PQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFF-QSHIRKFCLRYGAALIY-T  285 (523)
Q Consensus       208 ~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfI-qq~LR~icL~YGAaLiY-T  285 (523)
                                                   .+|+++|++|+|..+.-+....+.......| ....+.+|-+++.--+| |
T Consensus       138 -----------------------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~~~~~~~E~  188 (214)
T 2j1l_A          138 -----------------------------KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             -----------------------------SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             -----------------------------CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             -----------------------------863542113566311245666777630476737899999997089317887


Q ss_pred             CCCCHHHHHHHHHHHHHHHC
Q ss_conf             26636789999999998760
Q Ver_Hs_NP_0572  286 SVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       286 S~ke~knl~LLykYl~HrLy  305 (523)
                      |++.+.|++-+...|...+.
T Consensus       189 Sakt~~gV~~~f~~ii~~~l  208 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVAL  208 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
T ss_conf             40588678899999999999


No 49 
>cd01863 Rab18 Rab18 subfamily.  Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex.  In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.77   E-value=1.7e-07  Score=74.27  Aligned_columns=156  Identities=27%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+++...-+.+|.-..+.-+.+.  -++.+|=..|...+..|.+.-..--+    .+
T Consensus         3 iv~iG~~~VGKTsli~r~~~~~f~~~~~~Ti~~~~~~k~i~~~~~~--~~l~iwDt~G~e~~~~l~~~~~~~~~----~~   76 (161)
T cd01863           3 ILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKK--VKLAIWDTAGQERFRTLTSSYYRGAQ----GV   76 (161)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEE--EEEEEEECCCCCHHHHHHHHHCCCCC----EE
T ss_conf             8998079965899999986282077656510002458899898969--99999754887101245475435998----79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+ .=.+.+++|+.-++                                                        
T Consensus        77 i~vfd~t~~-~Sf~~i~~w~~~i~--------------------------------------------------------   99 (161)
T cd01863          77 ILVYDVTRR-DTFTNLETWLNELE--------------------------------------------------------   99 (161)
T ss_pred             EEEEECCCH-HHHHHHHHHHHHHH--------------------------------------------------------
T ss_conf             999856986-79999999999999--------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                          ....+-.+|+++|.+|+|.            +...+...-.+.+|.++|+-.+.||++.+.|++-+...|..++
T Consensus       100 ----~~~~~~~~~~ilvGNK~Dl------------~~r~v~~~e~~~~a~~~~~~~~e~SAk~~~nv~e~F~~l~~~i  161 (161)
T cd01863         100 ----TYSTNNDIVKMLVGNKIDK------------ENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEKI  161 (161)
T ss_pred             ----HHCCCCCCEEEEECCCCCC------------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             ----7338999389996123343------------0004888899999996699299997058978789999999849


No 50 
>cd04109 Rab28 Rab28 subfamily.  First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA).  In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos.  Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus.  The two human isoforms are presumbly the result of alternative splicing.  Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs 
Probab=98.77   E-value=1.7e-07  Score=74.32  Aligned_columns=170  Identities=27%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+.+...-|++|.--.+. -+....-.+++|-..|...+..++..-+.--+    .+
T Consensus         3 VvliGd~~VGKTSLi~rf~~~~F~~~y~~Tig~d~~~k~i~-i~~~~~v~l~iwDtaGqe~~~~~~~~y~~~a~----~~   77 (215)
T cd04109           3 IVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVT-LPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAH----AV   77 (215)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEE-ECCCCEEEEEEEECCCCCHHHHHHHHHHCCCC----EE
T ss_conf             89982698538999988770721776465145678789999-75860589999864773023688998705998----48


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+.+| +.|+.|+..+++....-.                                                 
T Consensus        78 ilVYdIt~~~SF-~~i~~W~~~i~~~~~~~~-------------------------------------------------  107 (215)
T cd04109          78 FLVYDVTNSQSF-ENLEDWYSMVRKVLKSSE-------------------------------------------------  107 (215)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHHHCCC-------------------------------------------------
T ss_conf             999753897689-999999999998731058-------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCC
Q ss_conf             88762300588327998507412555542057747899999999999999718768883266367899999999987606
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYG  306 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLyg  306 (523)
                               -.++|++|.+|+|.           +++..+-..-.+.||-++|+..|.||+|...|++.+...|.-++.|
T Consensus       108 ---------~~~~iiLVGNK~DL-----------~~~R~Vs~ee~~~~A~~~~~~f~EvSAktg~nV~elF~~la~~i~~  167 (215)
T cd04109         108 ---------TQPLVVLVGNKTDL-----------EHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             ---------CCCEEEEECCCCCH-----------HHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             ---------98189996054240-----------1206679899999999649959999626798888999999999808


Q ss_pred             CCCCCCCC
Q ss_conf             55565564
Q Ver_Hs_NP_0572  307 FPYKIPAV  314 (523)
Q Consensus       307 fpf~~~a~  314 (523)
                      ...+..+.
T Consensus       168 ~~~~~~~~  175 (215)
T cd04109         168 VDLSKAEL  175 (215)
T ss_pred             CCCCHHHC
T ss_conf             63110104


No 51 
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.77   E-value=3.4e-07  Score=72.24  Aligned_columns=159  Identities=23%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|..++||||||.+|.+.+-..+... ....+....-...+..-++.+|-..+...+..+.+.....-.    .+++
T Consensus         9 i~ivG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~----~~i~   84 (170)
T 1z08_A            9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN----GAIL   84 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCS----EEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCHHHHCCCCHHHHCCCC----EEEE
T ss_conf             899817997789999998658036544432332011333026614788753013210000112302220562----5788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|++.+.++-. +.+|+.-++.......                                                   
T Consensus        85 v~d~~~~~s~~~-~~~~~~~~~~~~~~~~---------------------------------------------------  112 (170)
T 1z08_A           85 VYDITDEDSFQK-VKNWVKELRKMLGNEI---------------------------------------------------  112 (170)
T ss_dssp             EEETTCHHHHHH-HHHHHHHHHHHHGGGS---------------------------------------------------
T ss_pred             EECCCCCCCCHH-HHHHHHHHCCCCCCCC---------------------------------------------------
T ss_conf             731432332000-1121100000245554---------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                |+++|++|+|.           .++.++-.+-++.++-.+++..+.+|++...|++-+...|..+++
T Consensus       113 ----------p~ilVgnK~Dl-----------~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gi~~lf~~i~~~i~  168 (170)
T 1z08_A          113 ----------CLCIVGNKIDL-----------EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             ----------EEEEEEECGGG-----------GGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----------CEEECCCCCHH-----------HHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ----------21220344011-----------111034578999999964993899961589788899999999983


No 52 
>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes; HET: GDP; 1.80A {Homo sapiens}
Probab=98.77   E-value=3.2e-08  Score=79.25  Aligned_columns=159  Identities=21%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88973699767899999742014688865214564045000043252463686586243245556787002666455655
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLV  149 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIv  149 (523)
                      |+|+|..++|||||+.+|.+..........+-.|-....-|.. ...+.+|-..|...+..+.+..+..-.    .++||
T Consensus        10 I~viG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~d----~~i~v   84 (174)
T 2dpx_A           10 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGE-EASLMVYDIWEQDGGRWLPGHCMAMGD----AYVIV   84 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCC---------CEEEEEEEETTE-EEEEEEECC-------CCHHHHHTSCS----EEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCE-EEEEEEEECCCCCCCHHHHHHHHHCCH----HHHHE
T ss_conf             9998079987999999984563664123047645542366040-134777621000100111111110100----00000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40101368999999999999999973278988999999999999998504555666655344567666776534478887
Q Ver_Hs_NP_0572  150 VDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGA  229 (523)
Q Consensus       150 lDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLge  229 (523)
                      .|++.|+++ +.+..|+..+.++...-.+                                                   
T Consensus        85 ~d~~~~~s~-~~~~~~~~~i~~~~~~~~~---------------------------------------------------  112 (174)
T 2dpx_A           85 YSVTDKGSF-EKASELRVQLRRARQTDDV---------------------------------------------------  112 (174)
T ss_dssp             EETTCHHHH-HHHHHHHHHHHHHC---CC---------------------------------------------------
T ss_pred             ECCCCCCCC-CCCCHHHHHHHHCCCCCCE---------------------------------------------------
T ss_conf             002123420-1000012343210112420---------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             6230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  230 DTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       230 g~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                               |++||++|+|.           .+...+..+-.|.|+-+||+..+.||.+.+.|++-+...|.+.++
T Consensus       113 ---------piiiv~nK~Dl-----------~~~~~v~~~e~~~~~~~~~~~~~~~Sak~~~~i~~~f~~l~~~i~  168 (174)
T 2dpx_A          113 ---------PIILVGNKSDL-----------VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR  168 (174)
T ss_dssp             ---------CEEEEEECTTC-----------CTTCCSCHHHHHHHHHHHTSEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             ---------EEEEEHHCCCH-----------HHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ---------20100111221-----------231155278888899865971899861689788899999999999


No 53 
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76   E-value=1.8e-07  Score=74.12  Aligned_columns=171  Identities=17%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88973699767899999742014688865214564045000043252463686586243245556787002666455655
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLV  149 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIv  149 (523)
                      |+|+|+.++|||||+.+|.+-+-...........+...-...+..-.+++|-..|...+..+.+.....-+    .+++|
T Consensus        10 I~iiG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~----~ii~v   85 (184)
T 1m7b_A           10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD----AVLIC   85 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCS----EEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHCCCE----EEEEE
T ss_conf             99981799878999999863843666354377756553220653477642145444333100001101212----46666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40101368999999999999999973278988999999999999998504555666655344567666776534478887
Q Ver_Hs_NP_0572  150 VDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGA  229 (523)
Q Consensus       150 lDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLge  229 (523)
                      .|.+.+.++-.-++.|...++.+.                                                        
T Consensus        86 ~d~~~~~sf~~~~~~~~~~~~~~~--------------------------------------------------------  109 (184)
T 1m7b_A           86 FDISRPETLDSVLKKWKGEIQEFC--------------------------------------------------------  109 (184)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--------------------------------------------------------
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_conf             406716568888887788887617--------------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHCCEEEE-ECCCCHHH-HHHHHHHHHHHHCC
Q ss_conf             62300588327998507412555542057747899999-99999999971876888-32663678-99999999987606
Q Ver_Hs_NP_0572  230 DTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFF-QSHIRKFCLRYGAALIY-TSVKENKN-IDLVYKYIVQKLYG  306 (523)
Q Consensus       230 g~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfI-qq~LR~icL~YGAaLiY-TS~ke~kn-l~LLykYl~HrLyg  306 (523)
                            -.+|+++|++|+|..+..........++...| .+-...+|=+.++-.+| ||++.+.| ++-+...+....++
T Consensus       110 ------~~~piilvgnK~D~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~E~Sak~~~n~v~e~f~~~~~~~~~  183 (184)
T 1m7b_A          110 ------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             ------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             ------CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             ------99418998625475432036788775203355889999999971895389975146872489999999999960


No 54 
>1vg8_A RAS-related protein RAB-7; GTP-binding protein; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.76   E-value=2.4e-07  Score=73.29  Aligned_columns=183  Identities=22%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             588973699767899999742014688865-2145640450000432524636865862432455567870026664556
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVM  147 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVv  147 (523)
                      .|+|+|..++|||||+.+|.+..-...... ++..|..+.-.......++.+|-..|...+..+.+..+..-.    .++
T Consensus        10 KI~iiG~~~vGKSsLi~~l~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~----~~i   85 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD----CCV   85 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCS----EEE
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCC----EEE
T ss_conf             9999807998789999998648016752563035789999751276155565327764311225531002421----133


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55401013689999999999999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  148 LVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       148 IvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      |+.|.+.+..+-. +.+|+.-++.......                                                  
T Consensus        86 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~--------------------------------------------------  114 (207)
T 1vg8_A           86 LVFDVTAPNTFKT-LDSWRDEFLIQASPRD--------------------------------------------------  114 (207)
T ss_dssp             EEEETTCHHHHHT-HHHHHHHHHHHHCCSS--------------------------------------------------
T ss_pred             EEEEEECCHHHCC-CHHHHHHHHHHHHHCC--------------------------------------------------
T ss_conf             4443200001002-0346899999862116--------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             87623005883279985074125555420577478999999999999997187688832663678999999999876065
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYGF  307 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLygf  307 (523)
                             .-++|+++|.+|+|    |..+....++...+.+.       .+++..+.+|++.+.+++.+...|...++..
T Consensus       115 -------~~~~piiiV~nK~D----l~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gi~~lf~~l~~~i~~~  176 (207)
T 1vg8_A          115 -------PENFPFVVLGNKID----LENRQVATKRAQAWCYS-------KNNIPYFETSAKEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             -------GGGSCEEEEEECTT----SSCCCSCHHHHHHHHHH-------TTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             -------CCCCEEEEEECCCC----CCHHHHHHHHHHHHHHH-------HCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             -------78841899844645----10111048999999998-------5389447751356778889999999999862


Q ss_pred             CCCCCCCCCCCCEEEEC
Q ss_conf             55655641136402526
Q Ver_Hs_NP_0572  308 PYKIPAVVVEKDAVFIP  324 (523)
Q Consensus       308 pf~~~a~ViDrD~IfIP  324 (523)
                      ...........+.+.+.
T Consensus       177 ~~~~~~~~~~~~~~~~~  193 (207)
T 1vg8_A          177 ETEVELYNEFPEPIKLD  193 (207)
T ss_dssp             HHHHHHHHHSCCCC---
T ss_pred             HCCCCCCCCCCCCEECC
T ss_conf             00122222466631226


No 55 
>cd01865 Rab3 Rab3 subfamily.  The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D.  All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression.  Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules.  Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.76   E-value=3.3e-07  Score=72.28  Aligned_columns=156  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.|+..   .+.+...-+.+|..-.+...+..  -.+.+|=..|...+..+.+..+.--.    .+
T Consensus         4 iilvGd~~VGKTsli~rf~~~~f~~~y~~Ti~~~~~~k~i~~~~~~--v~l~iwDt~G~e~~~~~~~~~~~~~~----~~   77 (165)
T cd01865           4 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKR--VKLQIWDTAGQERYRTITTAYYRGAM----GF   77 (165)
T ss_pred             EEEEECCCCCHHHHHHHHHCCEECCCCCCCEEEEEEEEEEEECCEE--EEEEEEECCCCCHHHHHHHHHCCCCC----EE
T ss_conf             9998079953899888764481066634303656789999877938--99999745887013456564336998----89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+-++ +.+.+|++-++.+-..                                                   
T Consensus        78 iivfd~t~~~Sf-~~i~~w~~~i~~~~~~---------------------------------------------------  105 (165)
T cd01865          78 ILMYDITNEESF-NAVQDWSTQIKTYSWD---------------------------------------------------  105 (165)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             999866986689-9999999999860699---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                .+|+++|.+|+|.           +++..+-..-.+.+|-++|...|.||+|.+.|++.+...|...+
T Consensus       106 ----------~~~iilVGNK~Dl-----------~~~r~v~~~~~~~~a~~~~~~y~EtSAk~~~nV~e~F~~l~~~i  162 (165)
T cd01865         106 ----------NAQVILVGNKCDM-----------EDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII  162 (165)
T ss_pred             ----------CEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             ----------6089997217772-----------46553138899999996599499997158988789999999998


No 56 
>cd04116 Rab9 Rab9 subfamily.  Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47).  Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs.  Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.  Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.76   E-value=2.3e-07  Score=73.38  Aligned_columns=161  Identities=24%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+++|+.++|||+|+.++..-+-..+... ++..|....-.-......+.+|-..|...+..|.+....--+    .++|
T Consensus         8 ivliGd~~vGKTsLi~rf~~~~f~~~~~~tig~~~~~k~i~~~~~~~~l~i~Dtag~e~~~~l~~~~~~~~~----~~ii   83 (170)
T cd04116           8 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSD----CCLL   83 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC----EEEE
T ss_conf             999807995489999887538117773473231102200004796489998707898101231157631898----4899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |-|.+.+.++-. +..|+.-+..+.+.-.                                                   
T Consensus        84 vydit~~~Sf~~-i~~w~~e~~~~~~~~~---------------------------------------------------  111 (170)
T cd04116          84 TFAVDDSQSFQN-LSNWKKEFIYYADVKE---------------------------------------------------  111 (170)
T ss_pred             EEECCCHHHHHH-HHHHHHHHHHHCCCCC---------------------------------------------------
T ss_conf             985499768999-9999999998603577---------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCCHHHHHHHHHHHHHHH
Q ss_conf             76230058832799850741255554205774789999999999999971876888-32663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIY-TSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiY-TS~ke~knl~LLykYl~HrL  304 (523)
                            .=.+|+++|++|+|.            ++..+...-.+.+|-++|...+| ||++.+.|++.+...+..++
T Consensus       112 ------~~~ipiilVGNK~DL------------~~r~V~~~e~~~~~~~~~~~~~~E~SAk~g~nv~~~F~~l~r~i  170 (170)
T cd04116         112 ------PESFPFVVLGNKNDI------------PERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRRV  170 (170)
T ss_pred             ------CCCCEEEEEECCCCC------------HHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             ------897079998354220------------11101178999999970797178986048988789999998509


No 57 
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76   E-value=1.2e-07  Score=75.30  Aligned_columns=157  Identities=24%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|+.++|||||+.++..   .+++....+.++.+..+...+...  .+.+|-..|...+..+.+.......    .+
T Consensus         8 i~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~i~d~~~~~~~~~~~~~~~~~~~----~~   81 (199)
T 2f9l_A            8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI--KAQIWDTAGQERYRRITSAYYRGAV----GA   81 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE--EEEEEECSSGGGTTCCCHHHHTTCS----EE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHCCCC----EE
T ss_conf             89982699768999999862833676456145445655543100356--5565245321012356676504783----79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||.|++.+.+ .+.++.|+..++.+.                                                     
T Consensus        82 i~v~d~~~~~s-~~~~~~~~~~~~~~~-----------------------------------------------------  107 (199)
T 2f9l_A           82 LLVYDIAKHLT-YENVERWLKELRDHA-----------------------------------------------------  107 (199)
T ss_dssp             EEEEETTCHHH-HHTHHHHHHHHHHHS-----------------------------------------------------
T ss_pred             EEEECCCCHHH-HHHHHHHHHHHHHHC-----------------------------------------------------
T ss_conf             99702678668-899998899999834-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              +-.+|+++|++|+|.           .++......-.+.+|-.++..++.||++...|++-+...|.-.++
T Consensus       108 --------~~~~piilVgnK~Dl-----------~~~~~~~~~e~~~~a~~~~~~~~e~Saktg~~v~elf~~l~~~i~  167 (199)
T 2f9l_A          108 --------DSNIVIMLVGNKSDL-----------RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY  167 (199)
T ss_dssp             --------CTTCEEEEEEECTTC-----------GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             --------CCCCEEEEEEECCCC-----------CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             --------899779999610572-----------200146077888999973897378872378788899999999999


No 58 
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.76   E-value=8.3e-08  Score=76.42  Aligned_columns=157  Identities=18%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|+.++|||||+.+|.+   .+.+....+-.|.+.-..+..+   -.+.+|...|...+..+.+..+..-.+    +
T Consensus        17 I~iiG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---~~l~i~d~~g~~~~~~~~~~~~~~~~~----~   89 (206)
T 2bov_A           17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE---VQIDILDTAGQEDYAAIRDNYFRSGEG----F   89 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEE---EEEEEEECCCTTCCHHHHHHHHHHCSE----E
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECCCCCCCCCCCCCCCCCCCE----E
T ss_conf             999827998789999998628316752563045789999834748---999873024743113100000112201----1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      ++|.|.+.+ .-++.+..|+..+.                                                        
T Consensus        90 i~v~d~~~~-~s~~~~~~~~~~~~--------------------------------------------------------  112 (206)
T 2bov_A           90 LCVFSITEM-ESFAATADFREQIL--------------------------------------------------------  112 (206)
T ss_dssp             EEEEETTCH-HHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred             EEEECCCCH-HHHHHHHHHHHHHH--------------------------------------------------------
T ss_conf             222114320-01688998866643--------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                          .....-.+|++||++|+|.           .++..+-++.++.|+-+|++-.|.||++.+.|++.+..+|.+.++
T Consensus       113 ----~~~~~~~~piilv~nK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~i~  176 (206)
T 2bov_A          113 ----RVKEDENVPFLLVGNKSDL-----------EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR  176 (206)
T ss_dssp             ----HHTTCSCCCEEEEEECTTC-----------GGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             ----HCCCCCCCEEEEECCCCCC-----------HHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             ----1147997079971476440-----------010467889999999964895589860589888899999999999


No 59 
>cd04123 Rab21 Rab21 subfamily.  The localization and function of Rab21 are not clearly defined, with conflicting data reported.  Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker.  More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.  Most Rab GTPases contain a lipid modification site
Probab=98.75   E-value=1.8e-07  Score=74.16  Aligned_columns=156  Identities=23%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+.+...-+.+|..-.+.-+++.  ..+++|-..|...+..|.+.-+.--.    .+
T Consensus         3 i~~iGd~~vGKTsli~r~~~~~f~~~~~~ti~~~~~~k~i~~~~~~--~~l~iwDt~G~~~~~~~~~~~~~~a~----~~   76 (162)
T cd04123           3 VVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKR--IDLAIWDTAGQERYHALGPIYYRDAD----GA   76 (162)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCE--EEEEEEECCCCHHHHHHHHHHHCCCC----EE
T ss_conf             8998269965899999986281177645411244135533159938--99997307875023566576614898----68


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+.++-. +++|+.-++++...                                                   
T Consensus        77 ilvydit~~~Sf~~-i~~w~~~i~~~~~~---------------------------------------------------  104 (162)
T cd04123          77 ILVYDITDADSFQK-VKKWIKELKQMRGN---------------------------------------------------  104 (162)
T ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             99942798778999-99999989973189---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                .+|+++|++|+|.           +++..+=.+-.+.+|-++|+..+-||+|.+.|++-+...|.-++
T Consensus       105 ----------~~piilVGNK~Dl-----------~~~r~V~~~~~~~~a~~~~~~~~E~Sak~~~nv~e~F~~l~~~i  161 (162)
T cd04123         105 ----------NISLVIVGNKIDL-----------ERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             ----------CCEEEEEEEHHHH-----------HHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             ----------9659998400231-----------21025477899999996499389997158978789999999982


No 60 
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75   E-value=7.8e-08  Score=76.62  Aligned_columns=162  Identities=23%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|..++|||||+.+|.+.+-..+... .+..|....-......-.+.+|-..+...+..+.+..+..-.    .+++
T Consensus        10 i~iiG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~----~ii~   85 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD----CCLL   85 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS----EEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCHHHHHHHHCCHHHCCCCC----CEEE
T ss_conf             999817997689999998648026763574011246775322386122101441011233210101103654----0566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.++++-. +..|+.-++.+.....                                                   
T Consensus        86 v~d~~~~~s~~~-~~~~~~~i~~~~~~~~---------------------------------------------------  113 (177)
T 1wms_A           86 TFSVDDSQSFQN-LSNWKKEFIYYADVKE---------------------------------------------------  113 (177)
T ss_dssp             EEETTCHHHHHT-HHHHHHHHHHHHTCSC---------------------------------------------------
T ss_pred             ECCCCCCCCCCH-HHHHHHHHHHHHHHCC---------------------------------------------------
T ss_conf             335663000101-3343788998742013---------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888-326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIY-TSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiY-TS~ke~knl~LLykYl~HrLy  305 (523)
                            .-++|++||++|+|.            .+..+...-++.++-+++.--+| ||++...+++-+..-|..++.
T Consensus       114 ------~~~~piiiv~nK~Dl------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~  173 (177)
T 1wms_A          114 ------PESFPFVILGNKIDI------------SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  173 (177)
T ss_dssp             ------TTTSCEEEEEECTTC------------SSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ------CCCCCEEEEECCCCC------------CHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ------457737998135571------------000356789999999807971899851688788899999999998


No 61 
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8
Probab=98.75   E-value=1.3e-07  Score=74.99  Aligned_columns=159  Identities=23%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             588973699767899999742014688865-2145640450000432524636865862432455567870026664556
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVM  147 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVv  147 (523)
                      .|+|+|..++|||||+.+|.+.+-...-.. ....+..+.-......-++.+|-..|...+..+.+.....-.    .++
T Consensus         8 kI~iiG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~----~~i   83 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSA----AAI   83 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCS----EEE
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC----EEE
T ss_conf             8899807998789999998648135552320000011100100140354431026662012121013203665----079


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55401013689999999999999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  148 LVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       148 IvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      +|.|.+.+ .-++.+..|+..++.+...                                                    
T Consensus        84 ~v~d~~~~-~s~~~~~~~~~~~~~~~~~----------------------------------------------------  110 (170)
T 1z0j_A           84 IVYDITKE-ETFSTLKNWVRELRQHGPP----------------------------------------------------  110 (170)
T ss_dssp             EEEETTCH-HHHHHHHHHHHHHHHHSCT----------------------------------------------------
T ss_pred             EEEECCCC-HHHHHHHHHHHHHHCCCCC----------------------------------------------------
T ss_conf             99743551-1343233343221103799----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             87623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                               .+|++||++|+|.           .+...+..+.++.++-++++..+.||++.+.|++-+...|..++
T Consensus       111 ---------~~piilv~nK~Dl-----------~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~elf~~i~~~i  167 (170)
T 1z0j_A          111 ---------SIVVAIAGNKCDL-----------TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             ---------TSEEEEEEECTTC-----------GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ---------CCEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             ---------8469998334300-----------13320135788999995498599985268978889999999961


No 62 
>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74   E-value=1.8e-07  Score=74.15  Aligned_columns=161  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|..++|||||+.+|....-...-.. .+..|....-...+....+.+|-..|...+..+.+..+....    .+++
T Consensus         9 I~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~----~~i~   84 (170)
T 1yzq_A            9 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSA----AAVV   84 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCS----EEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCHHCCCCHHHHCCCE----EEEE
T ss_conf             999807997789999998648245554421000343357611584676643146552100123300100011----3466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.|+.+- .+..|..-.+.+...                                                     
T Consensus        85 v~d~~~~~s~~-~i~~~~~~~~~~~~~-----------------------------------------------------  110 (170)
T 1yzq_A           85 VYDITNVNSFQ-QTTKWIDDVRTERGS-----------------------------------------------------  110 (170)
T ss_dssp             EEETTCHHHHH-THHHHHHHHHHHHTT-----------------------------------------------------
T ss_pred             EECCCCHHHHH-HHHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             43156602455-555655433221147-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876065
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLYGF  307 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLygf  307 (523)
                              .+|+++|++|+|.           +++-....+.++.++-+++...+.+|++.+.+++-+...|...|-|+
T Consensus       111 --------~~p~ilV~nK~Dl-----------~~~~~~~~~~~~~~~~~~~~~~~evSa~~~~gv~~~f~~i~~~l~~~  170 (170)
T 1yzq_A          111 --------DVIIMLVGNKTDL-----------ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  170 (170)
T ss_dssp             --------SSEEEEEEECTTC-----------GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHSCCC
T ss_pred             --------CCEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             --------8417998625581-----------23332468999999996498189986268978889999999960379


No 63 
>cd04112 Rab26 Rab26 subfamily.  First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation.  Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.  Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.74   E-value=1.7e-07  Score=74.30  Aligned_columns=156  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHH----CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             88973699767899999742----01468886521456404500004325246368658624324555678700266645
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG----IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTL  145 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~----~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TL  145 (523)
                      |+++|+.++|||+|+.|+..    -+.+...-|.+|....+.-++..  .++.+|=..|...+.+|.+.-..--+    .
T Consensus         3 Iv~iGd~~VGKTsli~r~~~~~f~~~~~~~Tig~~~~~k~i~~~~~~--i~l~iwDtaGqe~~~~l~~~yy~~a~----~   76 (191)
T cd04112           3 VMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVK--VKLQIWDTAGQERFRSVTHAYYRDAH----A   76 (191)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEE--EEEEEEECCCCHHHHHHHHHHHCCCC----E
T ss_conf             89982699548999988762822587634211100367789887938--99998755887012455366613897----7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56554010136899999999999999997327898899999999999999850455566665534456766677653447
Q Ver_Hs_NP_0572  146 VMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVV  225 (523)
Q Consensus       146 VvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~l  225 (523)
                      ++||-|.+.+.+|-. |..|+.-++++...                                                  
T Consensus        77 ~iivyDit~~~Sf~~-i~~w~~~i~~~~~~--------------------------------------------------  105 (191)
T cd04112          77 LLLLYDITNKASFDN-IRAWLTEIKEYAQE--------------------------------------------------  105 (191)
T ss_pred             EEEEEECCCHHHHHH-HHHHHHHHHHHCCC--------------------------------------------------
T ss_conf             999987799789999-99999988852699--------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             8887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  226 PLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       226 PLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                 .+|+++|.+|+|.           +++..+-.+-.+.+|-++|+..|.||+|.+.|++-+..+|...+
T Consensus       106 -----------~~~ivlVGNK~DL-----------~~~r~V~~~e~~~~a~~~~~~~~EtSAk~~~nI~e~F~~l~~~i  162 (191)
T cd04112         106 -----------DVVIMLLGNKADM-----------SGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL  162 (191)
T ss_pred             -----------CCEEEEEEECCCC-----------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             -----------9489998632776-----------32255388999999996699599996258988889999999999


No 64 
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74   E-value=2e-07  Score=73.88  Aligned_columns=164  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHH----CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             88973699767899999742----01468886521456404500004325246368658624324555678700266645
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG----IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTL  145 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~----~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TL  145 (523)
                      |+|+|+.++|||||+.+|..    .+.+....+.++.+..+...++..  .+.+|-+.|...+..+.+.....-.    .
T Consensus        13 I~ivG~~~vGKTSLl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~--~l~i~D~~~~~~~~~~~~~~~~~ad----~   86 (180)
T 2g6b_A           13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV--KLQMWDTAGQERFRSVTHAYYRDAH----A   86 (180)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEE--EEEEEECCCC--------CCGGGCS----E
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCCCC--CEEEEECCCCCCCCCCHHHHHCCCC----E
T ss_conf             888816997789999998648536774332132013677897557431--0247514665433300035543886----2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56554010136899999999999999997327898899999999999999850455566665534456766677653447
Q Ver_Hs_NP_0572  146 VMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVV  225 (523)
Q Consensus       146 VvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~l  225 (523)
                      +++|.|.+.| .-++.+.+|+..+++..                                                    
T Consensus        87 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~----------------------------------------------------  113 (180)
T 2g6b_A           87 LLLLYDVTNK-ASFDNIQAWLTEIHEYA----------------------------------------------------  113 (180)
T ss_dssp             EEEEEETTCH-HHHHTHHHHHHHHHHHS----------------------------------------------------
T ss_pred             EEEECCCCCH-HHHHHHHHHHHHHHHCC----------------------------------------------------
T ss_conf             7998126631-44444566677886406----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             88876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  226 PLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       226 PLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                               +-++|++||.+|+|..           ++..+-.+.++.++-++++.++.||++.+.|++-+..+|.+.+.
T Consensus       114 ---------~~~~piivv~nK~D~~-----------~~~~v~~~~~~~~~~~~~~~~~e~Sa~~g~gI~~~f~~i~~~l~  173 (180)
T 2g6b_A          114 ---------QHDVALMLLGNKVDSA-----------HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  173 (180)
T ss_dssp             ---------CTTCEEEEEEECCSTT-----------SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ---------CCCCEEEEEEECCCCC-----------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ---------8981589985012434-----------44535889999999965990999862689788899999999999


Q ss_pred             CCCCCCC
Q ss_conf             6555655
Q Ver_Hs_NP_0572  306 GFPYKIP  312 (523)
Q Consensus       306 gfpf~~~  312 (523)
                      .-..+.|
T Consensus       174 ~~~~~~P  180 (180)
T 2g6b_A          174 RRSMKAP  180 (180)
T ss_dssp             C------
T ss_pred             HHHCCCC
T ss_conf             8312789


No 65 
>1x1r_A RAS-related protein M-RAS; GTP-binding; HET: GDP; 1.30A {Mus musculus} SCOP: c.37.1.8
Probab=98.73   E-value=7.9e-08  Score=76.59  Aligned_columns=166  Identities=19%

Q ss_pred             CCCCCCCCCEE-----EEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCC
Q ss_conf             45425787658-----8973699767899999742---014688865214564045000043252463686586243245
Q Ver_Hs_NP_0572   60 SRSKLPAGKNV-----LLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGL  131 (523)
Q Consensus        60 ~~~klp~~KnI-----LvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~L  131 (523)
                      +++..|. +|+     +|+|+.++|||||+.+|.+   .+.+....+-.|...-..+   +....+++|...|...+..+
T Consensus         2 ~~~~~p~-~~~~~~Ki~iiG~~~vGKTsll~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~i~d~~g~e~~~~~   77 (178)
T 1x1r_A            2 ATSAVPS-ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEID---NQWAILDVLDTAGQEEFSAM   77 (178)
T ss_dssp             ---------CCCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEET---TEEEEEEEEECCSCGGGCSS
T ss_pred             CCCCCCC-CCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCC---CCEEEEEEEEECCCCCCCCC
T ss_conf             6677887-6786689998817997789999998628237754541100112001237---81478877751365323325


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             55678700266645565540101368999999999999999973278988999999999999998504555666655344
Q Ver_Hs_NP_0572  132 LKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRR  211 (523)
Q Consensus       132 LK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~  211 (523)
                      .+..+.    .-..+++|.|++.+.++ ..+..|...+..+...                                    
T Consensus        78 ~~~~~~----~~~~~i~vfd~~~~~S~-~~~~~~~~~~~~~~~~------------------------------------  116 (178)
T 1x1r_A           78 REQYMR----TGDGFLIVYSVTDKASF-EHVDRFHQLILRVKDR------------------------------------  116 (178)
T ss_dssp             HHHHHH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTS------------------------------------
T ss_pred             CHHHCC----CCCEEEEEEECCCCCCH-HHHHHHHHHHHHHCCC------------------------------------
T ss_conf             400104----78547999742454211-2445666666530256------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHH
Q ss_conf             56766677653447888762300588327998507412555542057747899999999999999718768883266367
Q Ver_Hs_NP_0572  212 NTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENK  291 (523)
Q Consensus       212 ~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~k  291 (523)
                                              -++|+++|++|+|..           +...+..+-++.||-+||...+.+|.|...
T Consensus       117 ------------------------~~~piiiVgnK~D~~-----------~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  161 (178)
T 1x1r_A          117 ------------------------ESFPMILVANKVDLM-----------HLRKVTRDQGKEMATKYNIPYIETSAKDPP  161 (178)
T ss_dssp             ------------------------SCCCEEEEEECTTCS-----------TTCCSCHHHHHHHHHHHTCCEEEEBCSSSC
T ss_pred             ------------------------CCCEEEEEEECCCCC-----------CCCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             ------------------------764046775245521-----------003558899999999659948999615488


Q ss_pred             -HHHHHHHHHHHHHC
Q ss_conf             -89999999998760
Q Ver_Hs_NP_0572  292 -NIDLVYKYIVQKLY  305 (523)
Q Consensus       292 -nl~LLykYl~HrLy  305 (523)
                       |++-+...|.+.++
T Consensus       162 ~~i~e~f~~i~~~i~  176 (178)
T 1x1r_A          162 LNVDKTFHDLVRVIR  176 (178)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             787899999999998


No 66 
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.73   E-value=1.7e-07  Score=74.29  Aligned_columns=160  Identities=18%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88973699767899999742014688865214564045000043252463686586243245556787002666455655
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLV  149 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIv  149 (523)
                      |+|+|..++|||||+.+|.+-+-...-.......+-..=......-++.+|-..+...+..+.+..+..-.    .+++|
T Consensus        12 I~viG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~i~~~i~d~~~~~~~~~~~~~~~~~~~----~~i~v   87 (181)
T 2fn4_A           12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH----GFLLV   87 (181)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS----EEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCCHH----HEEEE
T ss_conf             99980799879999999863823676354157766555336882799886024572011000122200001----02331


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40101368999999999999999973278988999999999999998504555666655344567666776534478887
Q Ver_Hs_NP_0572  150 VDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGA  229 (523)
Q Consensus       150 lDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLge  229 (523)
                      .|.+.+.. .+.+.+|+..+......                                                      
T Consensus        88 ~d~~~~~s-~~~~~~~~~~~~~~~~~------------------------------------------------------  112 (181)
T 2fn4_A           88 FAINDRQS-FNEVGKLFTQILRVKDR------------------------------------------------------  112 (181)
T ss_dssp             EETTCHHH-HHHHHHHHHHHHHHHTS------------------------------------------------------
T ss_pred             EEECCCCH-HHHHHHHHHHHHHHCCC------------------------------------------------------
T ss_conf             00012100-23443223222211015------------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             6230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  230 DTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       230 g~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                            .++|+++|++|+|.           +++.....+.++.++.+++...+.||++.+.|++-+...|.+.++
T Consensus       113 ------~~~piilvgnK~Dl-----------~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~  171 (181)
T 2fn4_A          113 ------DDFPVVLVGNKADL-----------ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR  171 (181)
T ss_dssp             ------SCCCEEEEEECGGG-----------GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ------CCCEEEEEECCCCC-----------HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             ------78507997066551-----------023310478888999870872799960589888899999999999


No 67 
>d1ukvy_ c.37.1.8 (Y:) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae)}
Probab=98.73   E-value=1.5e-07  Score=74.71  Aligned_columns=156  Identities=18%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|+.++|||||+.++..   .+++....+.+|.+..+..+++  ...+.+|-..|...+..+.+..+.--.    .+
T Consensus         9 I~iiG~~~vGKTSLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~i~i~D~~g~e~~~~~~~~~~~~ad----~i   82 (204)
T d1ukvy_           9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK--TVKLQIWDTAGQERFRTITSSYYRGSH----GI   82 (204)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCTTCCCSSCCCEEEEEEEETTE--EEEEEEECCTTTTTTTCCCHHHHTTCS----EE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCE--EEEEEEECCCCCCHHHHHHHHHHCCCC----EE
T ss_conf             889816997799999998648105762452112466889988886--887443026773012345677614797----47


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      |+|.|.+.+..+-+ ++.|+.-+..+.                                                     
T Consensus        83 ilvfd~~d~~S~~~-~~~~~~~i~~~~-----------------------------------------------------  108 (204)
T d1ukvy_          83 IIVYDVTDQESFNG-VKMWLQEIDRYA-----------------------------------------------------  108 (204)
T ss_dssp             EEEEETTCHHHHHH-HHHHHHHHHHHS-----------------------------------------------------
T ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHHH-----------------------------------------------------
T ss_conf             99985166012335-689999986531-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                              ...+|++||++|+|.           +++..+-..-.+.||-.+++..+-||++...|++-+...|...+
T Consensus       109 --------~~~~~iiivgnK~D~-----------~~~~~v~~~e~~~~~~~~~~~~~e~SAk~~~gi~e~f~~i~~~i  167 (204)
T d1ukvy_         109 --------TSTVLKLLVGNKCDL-----------KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI  167 (204)
T ss_dssp             --------CTTCEEEEEEECTTC-----------TTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             --------CCCCEEEEEEECCCC-----------HHCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             --------024102455411340-----------01025418999999996198189995168988899999999999


No 68 
>d1d5ca_ c.37.1.8 (A:) Rab6 {Malaria parasite (Plasmodium falciparum)}
Probab=98.73   E-value=8.7e-08  Score=76.31  Aligned_columns=158  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|..++|||||+.+|.+-+-...-.. ++..|....=...+..-++.+|...|...+....+..+..-.    .+++
T Consensus         4 i~i~G~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d----~~i~   79 (162)
T d1d5ca_           4 LVFLGEQAVGKTSIITRFMYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSA----AAIV   79 (162)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTCCCCCCCEEEEEEEEETTEEEEEEEEECCCSGGGGGGHHHHHTTCS----EEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCC----EEEE
T ss_conf             899817998799999998648015661331554677789730881699986237652033456677632683----8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.++++ +.+.+|+.-++.......                                                   
T Consensus        80 v~d~~~~~s~-~~~~~~l~~i~~~~~~~~---------------------------------------------------  107 (162)
T d1d5ca_          80 VYDITNRQSF-ENTTKWIQDILNERGKDV---------------------------------------------------  107 (162)
T ss_dssp             EEETTCHHHH-HTHHHHHHHHHHHHTTSS---------------------------------------------------
T ss_pred             EEECCCCCCH-HHHHHHHHHHHHHCCCCE---------------------------------------------------
T ss_conf             9744666777-899999999975124865---------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                |++||++|+|..           ++-++....++.++-++++..+.+|++...+++-|.+-|.-+|
T Consensus       108 ----------piilvgnK~Dl~-----------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~lf~~i~~~l  162 (162)
T d1d5ca_         108 ----------IIALVGNKTDLG-----------DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKTASKL  162 (162)
T ss_dssp             ----------EEEEEEECGGGG-----------GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSCHHHHHHHHHCC
T ss_pred             ----------EEEEEEECCCCC-----------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             ----------789975214653-----------2245488999999996499299997268968789999999839


No 69 
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily.  Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II.  Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells.  In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine 
Probab=98.73   E-value=1.9e-07  Score=74.01  Aligned_columns=157  Identities=26%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCC-CCCCCCCCCCCHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243-24555678700266645
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYH-KGLLKFSLDAVSLKDTL  145 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~-~~LLK~aLt~~si~~TL  145 (523)
                      |+++|+.++|||+|+.|+..   .+.+...-|.+|..-.+.=+  +..-++.+|-..|...+ .+|.+....--+    .
T Consensus         5 ivliGd~~VGKTsli~r~~~~~F~~~~~~Tig~d~~~k~i~~~--~~~v~l~iwDtaGqe~f~~~l~~~y~~~a~----~   78 (170)
T cd04115           5 IIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEID--GERIKVQLWDTAGQERFRKSMVQHYYRNVH----A   78 (170)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEC--CEEEEEEEECCCCCHHHHHHHHHHHCCCCC----E
T ss_conf             9998079965899999986285575445312203578999988--958999982278733567777654304898----4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56554010136899999999999999997327898899999999999999850455566665534456766677653447
Q Ver_Hs_NP_0572  146 VMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVV  225 (523)
Q Consensus       146 VvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~l  225 (523)
                      ++||-|.+.+.++-. +..|+.-++.+...-.+                                               
T Consensus        79 ~ilvydit~~~SF~~-i~~w~~~i~~~~~~~~~-----------------------------------------------  110 (170)
T cd04115          79 VVFVYDVTNMASFHS-LPSWIEECEQHSLPNEV-----------------------------------------------  110 (170)
T ss_pred             EEEEEECCCHHHHHH-HHHHHHHHHHHCCCCCC-----------------------------------------------
T ss_conf             899987699778899-99999999972599861-----------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCC---CHHHHHHHHHHHHH
Q ss_conf             888762300588327998507412555542057747899999999999999718768883266---36789999999998
Q Ver_Hs_NP_0572  226 PLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVK---ENKNIDLVYKYIVQ  302 (523)
Q Consensus       226 PLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~k---e~knl~LLykYl~H  302 (523)
                                   |+++|++|+|.           +++..+-..-.+.+|-++|+..|-||+|   ++.|++.+...|..
T Consensus       111 -------------p~iLVGNK~DL-----------~~~r~Vs~~e~~~~A~~~~~~~fE~SAK~~~~~~nV~~~F~~la~  166 (170)
T cd04115         111 -------------PRILVGNKCDL-----------REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAH  166 (170)
T ss_pred             -------------EEEEEECCCCC-----------HHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             -------------79998021350-----------121367989999999966995999862678888687899999999


Q ss_pred             HH
Q ss_conf             76
Q Ver_Hs_NP_0572  303 KL  304 (523)
Q Consensus       303 rL  304 (523)
                      +|
T Consensus       167 ~l  168 (170)
T cd04115         167 KL  168 (170)
T ss_pred             HH
T ss_conf             96


No 70 
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae)}
Probab=98.72   E-value=4.5e-07  Score=71.37  Aligned_columns=160  Identities=24%

Q ss_pred             EEEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             588973699767899999742---01468886521456404500004325246368658624324555678700266645
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTL  145 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TL  145 (523)
                      .|+|+|..++|||||+.+|.+   .+.+..+-+.+|....+  +......++.+|-..|...+..+.+..+..-.    .
T Consensus         5 Ki~ivG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d----~   78 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRV--TINEHTVKFEIWDTAGQERFASLAPXYYRNAQ----A   78 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEE--EETTEEEEEEEEEECCSGGGGGGHHHHHTTCS----E
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEE--EECCEEEEEEEECCCCCHHHHHHHHHHHCCCC----C
T ss_conf             89998079987999999986483357635315533567789--99896899987226682245555254403578----4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56554010136899999999999999997327898899999999999999850455566665534456766677653447
Q Ver_Hs_NP_0572  146 VMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVV  225 (523)
Q Consensus       146 VvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~l  225 (523)
                      +++|.|++.|..+ ++++.|+..++.+...-.                                                
T Consensus        79 ~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~------------------------------------------------  109 (170)
T d1ek0a_          79 ALVVYDVTKPQSF-IKARHWVKELHEQASKDI------------------------------------------------  109 (170)
T ss_dssp             EEEEEETTCHHHH-HHHHHHHHHHHHHSCTTC------------------------------------------------
T ss_pred             EEEEEEECCCHHH-HHHHHHHHHHHHHHCCCC------------------------------------------------
T ss_conf             1899974161236-789999999986421587------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             8887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  226 PLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       226 PLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                   |+++|.+|+|..+...+..--.+        .++.++-.+++..+.||++...|++-+..-|..+|
T Consensus       110 -------------~~iiv~nK~D~~~~~~~~~i~~~--------~~~~~~~~~~~~~~e~Sa~~~~gi~e~f~~i~~~i  167 (170)
T d1ek0a_         110 -------------IIALVGNKIDXLQEGGERKVARE--------EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             -------------EEEEEEECGGGGGSSCCCCSCHH--------HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             -------------CEEEEECCCCCCCCCCCCCCCHH--------HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             -------------27999717552111565421778--------99999995598499986268978889999999855


No 71 
>cd04113 Rab4 Rab4 subfamily.  Rab4 has been implicated in numerous functions within the cell.  It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A.  Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane.  It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.71   E-value=1.9e-07  Score=74.01  Aligned_columns=158  Identities=20%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+++|+.++|||+|+.++..-+-..+... ++..|....=...+....+.+|=..|...+..|.+....--+    .++|
T Consensus         3 iviiGd~~VGKTsli~~~~~~~f~~~~~~Tig~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~----~~ii   78 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAA----GALL   78 (161)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHCCCCC----EEEE
T ss_conf             899826985589999998628106665641012013589988896999998325887013455586426997----7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |-|.+.+.++ +.+++|+.-++.+...                                                     
T Consensus        79 vydi~~~~Sf-~~i~~w~~~~~~~~~~-----------------------------------------------------  104 (161)
T cd04113          79 VYDITNRTSF-EALPTWLSDARALASP-----------------------------------------------------  104 (161)
T ss_pred             EEECCCHHHH-HHHHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             9855986689-9999999999872489-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                              .+|+++|++|+|.           .+...+=..-.+.+|-++|...+.||+|...|++-+...|.-.+
T Consensus       105 --------~~~iilvgNK~DL-----------~~~r~v~~~e~~~~a~~~~~~~~e~Sak~~~ni~e~F~~lar~i  161 (161)
T cd04113         105 --------NIVVILVGNKSDL-----------ADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             --------CCEEEEEECCCCC-----------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             --------9689998324564-----------21334588999999996599099997158988889999999829


No 72 
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.71   E-value=8.9e-07  Score=69.35  Aligned_columns=157  Identities=21%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|..++|||||+.++.+   .+++...-+.++....+..++.  .-.+.+|-..|...+..+....+..-.    .+
T Consensus        11 i~ivG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~----~~   84 (203)
T 1zbd_A           11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK--RIKLQIWDTAGLERYRTITTAYYRGAM----GF   84 (203)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTE--EEEEEEEEECCSGGGHHHHHTTGGGCS----EE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC--CCCEEEECCCCCHHHHHHHHHHCCCCC----EE
T ss_conf             778817998799999998648215541242123334310211122--562246316775267889987503773----68


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      ++|.|.+.+.++ +.+..|...++.+.                                                     
T Consensus        85 i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------------------------------  110 (203)
T 1zbd_A           85 ILMYDITNEESF-NAVQDWSTQIKTYS-----------------------------------------------------  110 (203)
T ss_dssp             EEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------------------------------
T ss_pred             EEEEECCCCCHH-HHHHHHHHHHHHCC-----------------------------------------------------
T ss_conf             999854772013-45544333321011-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              ...+|++||++|+|    |..++....++.       +.|+-.|+...|.||++...|++-+...|.+.++
T Consensus       111 --------~~~~piivvgnK~D----l~~~~~v~~~~~-------~~~~~~~~~~~~e~Sa~~g~gi~~~f~~l~~~i~  170 (203)
T 1zbd_A          111 --------WDNAQVLLVGNKCD----MEDERVVSSERG-------RQLADHLGFEFFEASAKDNINVKQTFERLVDVIC  170 (203)
T ss_dssp             --------CSSCEEEEEEECTT----CTTSCCSCHHHH-------HHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             --------CCEEEEEEECCCCH----HHHHHCCHHHHH-------HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             --------44058986114420----222211026778-------8999862982899961689788899999999999


No 73 
>e2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxID:9606]}
Probab=98.70   E-value=3.5e-07  Score=72.15  Aligned_columns=158  Identities=19%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|..++|||||+.+|..-.-...... .+..+....-.-......+.+|...|...+....+..+....    .+++
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~----~~i~   83 (171)
T e2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN----ALIL   83 (171)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHCCCC----EEEE
T ss_conf             999826998799999998648246665404787777678730893135888605884100001201203787----2799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.+.+ ++.+..|+..+......                                                     
T Consensus        84 v~d~~~~~s-~~~~~~~~~~~~~~~~~-----------------------------------------------------  109 (171)
T e2ew1a1          84 TYDITCEES-FRCLPEWLREIEQYASN-----------------------------------------------------  109 (171)
T ss_pred             EEECCCCCC-HHHHHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             874123120-25688889999863268-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                              .+|++||++|+|.           .++.++..+.++.||-.++...+.||++...|++-+...|.-++
T Consensus       110 --------~~~iilv~nK~Dl-----------~~~~~i~~~e~~~~~~~~~~~~~e~Saktg~gI~elf~~i~~~i  166 (171)
T e2ew1a1         110 --------KVITVLVGNKIDL-----------AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL  166 (171)
T ss_pred             --------CCEEEEEEECCCC-----------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             --------7037999723454-----------44556698999999996498399997158988889999999999


No 74 
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70   E-value=9.1e-08  Score=76.17  Aligned_columns=181  Identities=20%

Q ss_pred             HHH-HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEECCCHHCCHH-HHCCE
Q ss_conf             679-9999988641445425787658897369976789999974201468886----52145640450000432-52463
Q Ver_Hs_NP_0572   46 QNL-WSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGR----GLEYLYLNVHDEDRDDQ-TRCNV  119 (523)
Q Consensus        46 ~nl-WssiL~~v~t~~~~klp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~----gLeY~Yl~V~DeDrdd~-ar~~v  119 (523)
                      +|| .+||...-...+-+.-+.-| |+|+|+.++|||||+.+|.+........    ..++..-.+.-+..... -...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~K-I~lvG~~~vGKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~i   94 (211)
T 2g3y_A           16 ENLYFQSMSTDSVISSESGNTYYR-VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM   94 (211)
T ss_dssp             -------------------CCEEE-EEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECC
T ss_pred             CCCEECCCCCCCCCCCCCCCCEEE-EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEC
T ss_conf             441000012221135678882589-9998289865889887775265532543575178889999963486168998611


Q ss_pred             EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             68658624324555678700266645565540101368999999999999999973278988999999999999998504
Q Ver_Hs_NP_0572  120 WILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVE  199 (523)
Q Consensus       120 WiLdg~~~~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~e  199 (523)
                      |-..|...+ -...+...++     .++||.|.+.+.+ ++.+..|..-++                             
T Consensus        95 ~d~~g~e~~-~~~~~~~~~d-----~~ilvfD~~~~~S-~~~i~~~~~~i~-----------------------------  138 (211)
T 2g3y_A           95 WENKGENEW-LHDHCMQVGD-----AYLIVYSITDRAS-FEKASELRIQLR-----------------------------  138 (211)
T ss_dssp             TTTTHHHHH-HHHCCCCCCS-----EEEEEEETTCHHH-HHHHHHHHHHHH-----------------------------
T ss_pred             CCCCCCCCC-CCHHHHCCCE-----EEEEEEEEECCCC-CCCCCCCCEEEE-----------------------------
T ss_conf             101100000-1112220340-----3443443210454-232212310000-----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             55566665534456766677653447888762300588327998507412555542057747899999999999999718
Q Ver_Hs_NP_0572  200 PGEDFPASPQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYG  279 (523)
Q Consensus       200 pg~d~~~s~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YG  279 (523)
                                                     ....+..+|++||++|+|.           +++..+-..-.+.|+-.++
T Consensus       139 -------------------------------~~~~~~~~piiivgnK~Dl-----------~~~~~i~~~e~~~~~~~~~  176 (211)
T 2g3y_A          139 -------------------------------RARQTEDIPIILVGNKSDL-----------VRCREVSVSEGRACAVVFD  176 (211)
T ss_dssp             -------------------------------TSGGGTTSCEEEEEECTTC-----------GGGCCSCHHHHHHHHHHHT
T ss_pred             -------------------------------ECCCCCCEEEEEEECCCCC-----------CCCCCCCHHHHHHHHHHCC
T ss_conf             -------------------------------0134451689997025780-----------0104678899999999649


Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76888326636789999999998760
Q Ver_Hs_NP_0572  280 AALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       280 AaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                      +.++.||++...+++-+...|.+.++
T Consensus       177 ~~~~e~SAk~g~gI~elf~~i~~~i~  202 (211)
T 2g3y_A          177 CKFIETSAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             93899970488688899999999998


No 75 
>d1kao__ c.37.1.8 (-) Rap2a {Human (Homo sapiens)}
Probab=98.69   E-value=9.7e-07  Score=69.09  Aligned_columns=160  Identities=19%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             58897369976789999974201468886521456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      .|+++|..++|||||+.+|.+..-...-......+....-......-.+++|-..|...+..+.+.....-.    .+++
T Consensus         5 ki~lvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~----~~i~   80 (167)
T d1kao__           5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ----GFIL   80 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS----EEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCHHHHHHHHHHCCCC----EEEE
T ss_conf             899981799878999999864821676365301268999987367899998730274301233254302776----6999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.|.++-. +..|+.-+..+...                                                     
T Consensus        81 v~d~~~~~s~~~-~~~~~~~~~~~~~~-----------------------------------------------------  106 (167)
T d1kao__          81 VYSLVNQQSFQD-IKPMRDQIIRVKRY-----------------------------------------------------  106 (167)
T ss_dssp             EEETTCHHHHHH-HHHHHHHHHHHTTT-----------------------------------------------------
T ss_pred             EEECCCCCCCCH-HHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             985043333211-34778898864179-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                             ..+|++||.+|+|    |+.+.....|       .++.++-++++..+.||++...+++-+...|.-++
T Consensus       107 -------~~~piiivgnK~D----l~~~~~v~~~-------~~~~~~~~~~~~~~e~Sa~~g~gi~~lf~~i~~~l  164 (167)
T d1kao__         107 -------EKVPVILVGNKVD----LESEREVSSS-------EGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             -------SCCCEEEEEECGG----GGGGCCSCHH-------HHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             -------CCCEEEEEEECCC----CCCCCCCCHH-------HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             -------9846999750335----4556667989-------99999996498089986168978889999999973


No 76 
>e2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxID:9606]}
Probab=98.69   E-value=2.4e-07  Score=73.30  Aligned_columns=158  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCC--CCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             8897369976789999974201--46888652145640450000432524636865862432455567870026664556
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIE--EYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVM  147 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e--~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVv  147 (523)
                      |+|+|+.++||||||.+|...+  ......-.+..+....-...+..-.+.+|-..|......+.+.....-.    .++
T Consensus         9 i~ivG~~~vGKTsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~----~~i   84 (170)
T e2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH----ALL   84 (170)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHCCCC----EEE
T ss_conf             9998269977899999986483267742430100101578988897899999734784101121044525871----789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55401013689999999999999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  148 LVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       148 IvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      +|.|.+.+.++ +.+.+|...++.......                                                  
T Consensus        85 ~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~--------------------------------------------------  113 (170)
T e2g6ba1          85 LLYDVTNKASF-DNIQAWLTEIHEYAQHDV--------------------------------------------------  113 (170)
T ss_pred             EEEECCCHHHH-HHHHHHHHHHHHCCCCCC--------------------------------------------------
T ss_conf             98505520358-876111578862158870--------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             87623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                 |++||++|+|..           ++..+..+.++.++-++|+..+.||++...|++-+-..|.-.|
T Consensus       114 -----------p~iiv~nK~Dl~-----------~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gI~elf~~i~~~i  168 (170)
T e2g6ba1         114 -----------ALMLLGNKVDSA-----------HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_pred             -----------EEEEEEECCCHH-----------HHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             -----------577532100000-----------1015577899999996599289997268988889999999995


No 77 
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.69   E-value=2.3e-07  Score=73.37  Aligned_columns=159  Identities=16%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|+.++|||||+.++.+.+-...... .+..|..+.-..+...-++.+|-..|...+..+.+..+.--.    .+++
T Consensus        11 i~iiG~~~vGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~a~----~~i~   86 (206)
T 2bcg_Y           11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH----GIII   86 (206)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS----EEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEEECCCCCHHHHHHHHHCCCCC----EEEE
T ss_conf             999836997789999998648116761442033567999998646899998625785224568797525885----7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.|.++ +.+.+|+.-+..+...                                                     
T Consensus        87 v~d~~~~~s~-~~~~~~~~~~~~~~~~-----------------------------------------------------  112 (206)
T 2bcg_Y           87 VYDVTDQESF-NGVKMWLQEIDRYATS-----------------------------------------------------  112 (206)
T ss_dssp             EEETTCHHHH-HHHHHHHHHHHHHSCT-----------------------------------------------------
T ss_pred             EECCCCCCCC-HHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_conf             9706655653-0233455554332036-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              .+|++||.+|+|.           +++..+-+.-++.|+-.+++..+.+|++...|++-+...|...++
T Consensus       113 --------~~~iilvgnK~D~-----------~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~i~  170 (206)
T 2bcg_Y          113 --------TVLKLLVGNKCDL-----------KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK  170 (206)
T ss_dssp             --------TCEEEEEEECTTC-----------TTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             --------CCCEEEEECCCCC-----------CHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             --------8427998536343-----------101010278889999855882689870478888999999999999


No 78 
>cd04110 Rab35 Rab35 subfamily.  Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells.  Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.  Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is 
Probab=98.69   E-value=3.9e-07  Score=71.77  Aligned_columns=156  Identities=25%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.|+..   .+.+...-|.+|....|.-+++.  .++.+|=..|...+.+|.+.-..--+    .+
T Consensus         9 vv~iGd~~VGKTsli~r~~~~~F~~~y~~Tig~~~~~k~v~i~~~~--~~l~iwDtaGqe~~~~l~~~y~~~a~----~~   82 (199)
T cd04110           9 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGER--VKLQIWDTAGQERFRTITSTYYRGTH----GV   82 (199)
T ss_pred             EEEEECCCCCHHHHHHHHHCCEECCCCCCCEEEEEEEEEEEECCEE--EEEEEEECCCCCHHHHHHHHHCCCCC----EE
T ss_conf             9998269843899998876180076646511223578889985839--99999866997035677676503898----79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      |||-|.+.+.+| +.|.+|+..++.+...                                                   
T Consensus        83 ilVydit~~~Sf-~~i~~w~~~i~~~~~~---------------------------------------------------  110 (199)
T cd04110          83 IVVYDVTNGESF-VNVKRWLQEIEQNCDD---------------------------------------------------  110 (199)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             999877997799-9999999999851256---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                 +|+++|.+|+|.           +++.-+-..-.+.+|-++++..|.||+|...|++-+.+.|.-.++
T Consensus       111 -----------~~~iLVGNK~Dl-----------~~~r~v~~ee~~~~a~~~~~~f~EtSAktg~nV~e~F~~i~~~i~  167 (199)
T cd04110         111 -----------VCKVLVGNKNDD-----------PERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL  167 (199)
T ss_pred             -----------CCEEEEEECCCC-----------HHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             -----------736998403363-----------112265689999999966995999971589888899999999999


No 79 
>cd04139 RalA_RalB RalA/RalB subfamily.  The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB.  Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics.  Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration.  In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it.  A Ral-specific set of GEFs has been identified that are activated by Ras binding.  This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K).   Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis.  In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.68   E-value=3.6e-07  Score=72.01  Aligned_columns=157  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+++...-+..|. -.+..+.+.  ..+++|-..|...+..|.+.-+.--+    .+
T Consensus         3 ivliGd~~VGKTsli~r~~~~~f~~~~~~Ti~~~~~-~~i~~~~~~--v~l~iwDt~Gqe~~~~l~~~~~~~a~----~~   75 (164)
T cd04139           3 VIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGED--VQLNILDTAGQEDYAAIRDNYHRSGE----GF   75 (164)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEE-EEEEECCCE--EEEEEEECCCCHHHHHHHHHHCCCCC----EE
T ss_conf             899817985489999998718207654432232146-899885938--99998427887135788887525898----79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+.++ +.+.+|..-+..+...-.+                                                
T Consensus        76 ilvydit~~~Sf-~~i~~~~~~~~~~~~~~~i------------------------------------------------  106 (164)
T cd04139          76 LLVFSITDMESF-TATAEFREQILRVKDDDNV------------------------------------------------  106 (164)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHHCCCCC------------------------------------------------
T ss_conf             999752885578-8999999999986179972------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                  |+++|.+|+|.           +++..+-.+..+.+|-++|+..|-||+|.+.|++-+...|.-+++
T Consensus       107 ------------p~ilvGNK~Dl-----------~~~r~v~~~e~~~~a~~~~~~~~E~SAk~g~ni~e~F~~l~~~i~  162 (164)
T cd04139         107 ------------PLLLVGNKCDL-----------EDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             ------------EEEEECCCHHH-----------HHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ------------79997240132-----------231167489999999965995999971589887899999999996


No 80 
>cd01861 Rab6 Rab6 subfamily.  Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.67   E-value=2.6e-07  Score=72.97  Aligned_columns=156  Identities=25%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+.+...-|.+|.--.+.-+++  .-.+.+|=..|...+..|.+.-+.--+    .+
T Consensus         3 I~~iG~~~vGKTsli~r~~~~~f~~~~~~Tig~~~~~k~i~~~~~--~v~l~i~Dt~G~e~~~~l~~~~~~~~~----~~   76 (161)
T cd01861           3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK--TVRLQLWDTAGQERFRSLIPSYIRDSS----VA   76 (161)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCE--EEEEEEECCCCCHHHHHHHHHHCCCCC----CE
T ss_conf             899817985589999988638126655743433688889988793--999998517884257788898603888----17


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      |||-|++.+-++ +.+++|+.-+++....                                                   
T Consensus        77 ilvyd~t~~~Sf-~~~~~w~~~i~~~~~~---------------------------------------------------  104 (161)
T cd01861          77 VVVYDITNRQSF-DNTDKWIDDVRDERGN---------------------------------------------------  104 (161)
T ss_pred             EEEEECCCHHHH-HHHHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             999853987689-9999999888862399---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             887623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                                .+|+++|++|+|.           .++..+-.+-.+.++-++|+..+-||+|.+.|++-+.+-|...|
T Consensus       105 ----------~~~iilVgNK~Dl-----------~~~~~v~~~~~~~~a~~~~~~~~E~Sak~~~nV~e~F~~ia~~l  161 (161)
T cd01861         105 ----------DVIIVLVGNKTDL-----------SDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASAL  161 (161)
T ss_pred             ----------CCEEEEEECCCCH-----------HHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             ----------9789997155332-----------12136768899999996599399997148978789999999839


No 81 
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8
Probab=98.67   E-value=3e-07  Score=72.55  Aligned_columns=156  Identities=28%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|..++|||||+.++.+   .+++....+.+|....+...+..  -.+.+|...|...+..+.+..+..-.    .+
T Consensus         8 i~ivG~~~vGKSsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~----~~   81 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED--VRLMLWDTAGQEEFDAITKAYYRGAQ----AC   81 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEE--EEEEEECCTTGGGTTCCCHHHHTTCC----EE
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCE--EEEEEECCCCCCCCCHHHHHHHHCCH----HH
T ss_conf             9998189977899999986381465422101221000010358815--89864115775310010134431101----10


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||.|.+.|.++-. +.+|+.-+..+.                                                     
T Consensus        82 i~v~d~~~~~s~~~-~~~~~~~i~~~~-----------------------------------------------------  107 (168)
T 1z2a_A           82 VLVFSTTDRESFEA-ISSWREKVVAEV-----------------------------------------------------  107 (168)
T ss_dssp             EEEEETTCHHHHHT-HHHHHHHHHHHH-----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHCC-----------------------------------------------------
T ss_conf             11111001123333-221000012106-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                               -.+|+++|++|+|..           +...+-...++.|+-++++..+.+|++...|++-+..+|..+++
T Consensus       108 ---------~~~~iilvgnK~Dl~-----------~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~i~~l~~~l~~~~l  166 (168)
T 1z2a_A          108 ---------GDIPTALVQNKIDLL-----------DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             ---------CSCCEEEEEECGGGG-----------GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             ---------CCCEEEEEECCCCHH-----------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ---------882389973135712-----------32100478999999965991899861589788899999999997


No 82 
>e1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxID:10090]} SCOP: u1yvda1 u2fg5a1
Probab=98.67   E-value=3.6e-07  Score=72.02  Aligned_columns=159  Identities=23%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             588973699767899999742014688865-2145640450000432524636865862432455567870026664556
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVM  147 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVv  147 (523)
                      .|+|+|..++|||||+.+|...+-..+-.. ++..|....-..++..-++.+|-..|...+..+.+..+..-.    .++
T Consensus         6 kI~iiG~~~~GKTsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~----~~i   81 (167)
T e1z0ja1           6 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSA----AAI   81 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEECCCEEEEEEEECCCCHHHHHHHHCCCCCCE----EEE
T ss_conf             7899807998899999998648225654530011000023554581589997311571245442000147861----899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55401013689999999999999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  148 LVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       148 IvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      +|.|.+.+ .-++++.+|+..++.+...                                                    
T Consensus        82 ~v~d~~~~-~s~~~~~~~~~~~~~~~~~----------------------------------------------------  108 (167)
T e1z0ja1          82 IVYDITKE-ETFSTLKNWVRELRQHGPP----------------------------------------------------  108 (167)
T ss_pred             EEEECCCC-HHHHHHHHHHHHHHHHCCC----------------------------------------------------
T ss_conf             99625620-3678888899999860588----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             87623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                               ..|++||++|+|.           .++-.+....++.|+-++++..+.||.+...|++-+..-|.-++
T Consensus       109 ---------~~~iiivgnK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~elf~~i~~~i  165 (167)
T e1z0ja1         109 ---------SIVVAIAGNKCDL-----------TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_pred             ---------CEEEEEEEECCCC-----------HHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             ---------5378997403342-----------01115487899999996398699986168988889999999864


No 83 
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus)} SCOP: d1gwnc_
Probab=98.67   E-value=2.9e-07  Score=72.65  Aligned_columns=166  Identities=17%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88973699767899999742014688865214564045000043252463686586243245556787002666455655
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLV  149 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIv  149 (523)
                      |+|+|+.++|||+|+.++...+-..+....-...+...-...+..-++.+|-..|...+..+.+..+.--.    .+++|
T Consensus         5 I~iiG~~~vGKSsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d----~~ilv   80 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD----AVLIC   80 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCS----EEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHHCCCC----EEEEE
T ss_conf             99970799878999999862842676244068888886551556899998713551100312203331787----69999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40101368999999999999999973278988999999999999998504555666655344567666776534478887
Q Ver_Hs_NP_0572  150 VDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGA  229 (523)
Q Consensus       150 lDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLge  229 (523)
                      .|++.+.++-.-++.|...++...                                                        
T Consensus        81 ~d~~~~~S~~~~~~~~~~~~~~~~--------------------------------------------------------  104 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFC--------------------------------------------------------  104 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--------------------------------------------------------
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_conf             863761468888533489999734--------------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHCCEEEE-ECCCCHHH-HHHHHHHHH
Q ss_conf             6230058832799850741255554205774789999999-999999971876888-32663678-999999999
Q Ver_Hs_NP_0572  230 DTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQS-HIRKFCLRYGAALIY-TSVKENKN-IDLVYKYIV  301 (523)
Q Consensus       230 g~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq-~LR~icL~YGAaLiY-TS~ke~kn-l~LLykYl~  301 (523)
                            -.+|+++|++|+|..+......+..++....|.+ -.+.+|-++|+-.+| ||++...| +.-+...+.
T Consensus       105 ------~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~e~~~la~~~~~~~y~E~SA~~~~n~v~~vF~~~~  173 (179)
T d1m7ba_         105 ------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT  173 (179)
T ss_dssp             ------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHH
T ss_pred             ------CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             ------875046564155544311356655420377479899999999718943898740368741899999999


No 84 
>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens}
Probab=98.67   E-value=1.8e-07  Score=74.16  Aligned_columns=180  Identities=19%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             58897369976789999974201468886521456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      .|+|+|+.++|||+|+.++..-+-...........+.+.-...+..-++.+|-..|...+..+.+..+..-+    .++|
T Consensus        12 Ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~iwD~~g~~~~~~~~~~~~~~~~----~~i~   87 (197)
T 2rex_B           12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD----AVLL   87 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEE---CCCEEEEEEEECCSGGGTTTGGGGGTTCS----EEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECEEEEEEEECCCCCCCCCCCCCCCCCCEE----EEEE
T ss_conf             899981699878999999861755765343277756775232021457764113121122212300010112----3576


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|++.+=++-.-++.|...++++...                                                     
T Consensus        88 v~d~~~~~S~~~~~~~~~~~~~~~~~~-----------------------------------------------------  114 (197)
T 2rex_B           88 CFDISRPETVDSALKKWRTEILDYCPS-----------------------------------------------------  114 (197)
T ss_dssp             EEETTCTTTC--CHHHHHHHHHHHCTT-----------------------------------------------------
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             304560678999998877767761799-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHCCEEEE-ECCCCH-HHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789-999999999999971876888-326636-789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEH-FDFFQSHIRKFCLRYGAALIY-TSVKEN-KNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~-fDfIqq~LR~icL~YGAaLiY-TS~ke~-knl~LLykYl~HrLy  305 (523)
                               +|+++|++|+|...-......+.++. ..+=.+..+.+|-++|+..+| ||++.. .|++-+...+...+.
T Consensus       115 ---------~~iilVgnK~DL~~~~~~~~~~~~~~~~~is~~e~~~~a~~~~~~~y~E~Sakt~~~~v~~~f~~~~~~~~  185 (197)
T 2rex_B          115 ---------TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL  185 (197)
T ss_dssp             ---------SEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSCEEECBTTTBHHHHHHHHHHHHHHHC
T ss_pred             ---------CEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             ---------47999504568632113556655542046788999999996599589987523466127999999999996


Q ss_pred             CCCCCCCCC
Q ss_conf             655565564
Q Ver_Hs_NP_0572  306 GFPYKIPAV  314 (523)
Q Consensus       306 gfpf~~~a~  314 (523)
                      ..|...|..
T Consensus       186 ~~~~~~p~~  194 (197)
T 2rex_B          186 NKPSPLPQK  194 (197)
T ss_dssp             ---------
T ss_pred             CCCCCCCCC
T ss_conf             287888867


No 85 
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
Probab=98.67   E-value=2.8e-07  Score=72.80  Aligned_columns=173  Identities=19%

Q ss_pred             HHHHCCCCCCCCCCC---EEEEEECCCCCHHHHHHHHHHCC---CCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCC
Q ss_conf             886414454257876---58897369976789999974201---468886521456404500004325246368658624
Q Ver_Hs_NP_0572   54 SEVSTRSRSKLPAGK---NVLLLGEDGAGKTSLIRKIQGIE---EYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLY  127 (523)
Q Consensus        54 ~~v~t~~~~klp~~K---nILvLG~~~sGKTtLl~~Lq~~e---~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~  127 (523)
                      ++-++++..-.|.+.   .|+|+|+.++|||+|+.+|...+   .+....+.++....+.-  ....-++.+|-..|...
T Consensus         5 ~~~~~~~~~~~p~~~~~~KIvivG~~~vGKTSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~d~~g~~~   82 (191)
T 2a5j_A            5 HHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI--DGKQIKLQIWDTAGQES   82 (191)
T ss_dssp             -----CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE--TTEEEEEEEECCTTGGG
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEE--CCEEEEEEEEECCCHHH
T ss_conf             2344444578987343278999817997689999998638226762451101230454221--25057777630211112


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             32455567870026664556554010136899999999999999997327898899999999999999850455566665
Q Ver_Hs_NP_0572  128 HKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPAS  207 (523)
Q Consensus       128 ~~~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s  207 (523)
                      +..+.+.....-+    .+++|.|++.++++                             +.+...|.+.......    
T Consensus        83 ~~~~~~~~~~~~d----~ii~vfd~~d~~sf-----------------------------~~~~~~~~~~~~~~~~----  125 (191)
T 2a5j_A           83 FRSITRSYYRGAA----GALLVYDITRRETF-----------------------------NHLTSWLEDARQHSSS----  125 (191)
T ss_dssp             TSCCCHHHHTTCS----EEEEEEETTCHHHH-----------------------------HTHHHHHHHHHHHSCT----
T ss_pred             HHHHHHHHHHCCC----EEEEEEEECCCHHH-----------------------------HHHHHHHHHCCCCCCC----
T ss_conf             2234365431277----57999840562058-----------------------------8887642100124799----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
Q ss_conf             53445676667765344788876230058832799850741255554205774789999999999999971876888326
Q Ver_Hs_NP_0572  208 PQRRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSV  287 (523)
Q Consensus       208 ~~~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~  287 (523)
                                                   .+|++||++|+|.           +....+-.+-++.+|-+++...+.||+
T Consensus       126 -----------------------------~~piilv~nK~D~-----------~~~~~v~~~e~~~~~~~~~~~~~e~Sa  165 (191)
T 2a5j_A          126 -----------------------------NMVIMLIGNKSDL-----------ESRRDVKREEGEAFAREHGLIFMETSA  165 (191)
T ss_dssp             -----------------------------TCEEEEEEECTTC-----------GGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred             -----------------------------CEEEEEECCCCCH-----------HHHCCCCHHHHHHHHHHCCCEEEEEEC
T ss_conf             -----------------------------7079985153200-----------021055688999999965990999961


Q ss_pred             CCHHHHHHHHHHHHHHHC
Q ss_conf             636789999999998760
Q Ver_Hs_NP_0572  288 KENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       288 ke~knl~LLykYl~HrLy  305 (523)
                      +.+.|++-+...|.+.++
T Consensus       166 k~g~gI~elf~~i~~~i~  183 (191)
T 2a5j_A          166 KTACNVEEAFINTAKEIY  183 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
T ss_conf             689788899999999999


No 86 
>cd04120 Rab12 Rab12 subfamily.  Rab12 was first identified in canine cells, where it was localized to the Golgi complex.  The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported.  More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex.  Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.67   E-value=4.2e-07  Score=71.61  Aligned_columns=157  Identities=29%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+.+...-|.+|..-.+.-+.+..  ++.+|=..|...+.+|.+.-..--.    .+
T Consensus         3 IvliGd~~VGKTsli~rf~~~~F~~~y~~Tig~df~~k~i~i~g~~i--~lqIwDTaGqE~f~~l~~~y~r~a~----g~   76 (202)
T cd04120           3 VIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKI--RLQIWDTAGQERFNSITSAYYRSAK----GI   76 (202)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEEE--EEEEEECCCCCHHHHHHHHHHCCCC----EE
T ss_conf             89980798428999999763811666565123578899999879189--9998756886035788777632898----79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      |||-|.+.+.+|-. |++|+..++.+...                                                   
T Consensus        77 ilVyDit~~~SF~~-l~~W~~~i~~~~~~---------------------------------------------------  104 (202)
T cd04120          77 ILVYDITKKETFDD-LPKWMKMIDKYASE---------------------------------------------------  104 (202)
T ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             99976698457899-99999999972499---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888-326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIY-TSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiY-TS~ke~knl~LLykYl~HrLy  305 (523)
                                .+|+++|.+|+|+           +.+..+-.+--+.||-++++..+| ||+|.+.|++-+..-|.-+++
T Consensus       105 ----------~~~iiLVGNK~DL-----------~~~R~Vs~~e~~~~A~~~~~~~f~EtSAk~~~NV~e~F~~l~~~i~  163 (202)
T cd04120         105 ----------DAELLLVGNKLDC-----------ETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL  163 (202)
T ss_pred             ----------CEEEEEEECCCCH-----------HHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ----------3489997122212-----------1020236799999999708970899851489888899999999999


No 87 
>e2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxID:9606]}
Probab=98.66   E-value=4.1e-07  Score=71.69  Aligned_columns=162  Identities=22%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88973699767899999742014688865214564045000043252463686586243245556787002666455655
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLV  149 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvIv  149 (523)
                      |+|+|..++|||||+.++.+.........-.-...........+.....++.++.. .......+........--.+++|
T Consensus         6 I~ivG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v   84 (172)
T e2g3ya1           6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW-ENKGENEWLHDHCMQVGDAYLIV   84 (172)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC-CCCCEEECCCCCCCCCCCEEEEE
T ss_conf             99982799879999999864754324445404667888899976636555652000-23310000232111233214555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             40101368999999999999999973278988999999999999998504555666655344567666776534478887
Q Ver_Hs_NP_0572  150 VDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLGA  229 (523)
Q Consensus       150 lDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLge  229 (523)
                      .|.+....+....+.|..+.+...                                                        
T Consensus        85 ~~~~~~~s~~~~~~~~~~~~~~~~--------------------------------------------------------  108 (172)
T e2g3ya1          85 YSITDRASFEKASELRIQLRRARQ--------------------------------------------------------  108 (172)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHH--------------------------------------------------------
T ss_conf             310012430122145799998620--------------------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  230 DTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       230 g~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                           +..+|++||++|+|..           ++..+..+..+.++..+|...+.||++...|++-+-.+|.+++
T Consensus       109 -----~~~~~iivv~nK~Dl~-----------~~~~i~~~~~~~~a~~~~~~~~e~Sa~tg~gi~elf~~li~~i  167 (172)
T e2g3ya1         109 -----TEDIPIILVGNKSDLV-----------RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV  167 (172)
T ss_pred             -----CCCCCCEEEEECCCCC-----------CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             -----1477510100000100-----------1346688999999996498189986157978889999999999


No 88 
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8
Probab=98.66   E-value=2.8e-07  Score=72.79  Aligned_columns=161  Identities=20%

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCH
Q ss_conf             57876588973699767899999742---014688865214564045000043252463686586243245556787002
Q Ver_Hs_NP_0572   64 LPAGKNVLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVS  140 (523)
Q Consensus        64 lp~~KnILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~s  140 (523)
                      ||- .-|+|+|+.++|||||+.++.+   .+++....+-.|...-..|...   -.+.+|-..|...+..+.+.....-.
T Consensus         2 ~~~-~KI~iiG~~~vGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---~~l~i~d~~g~~~~~~~~~~~~~~~~   77 (168)
T 1u8z_A            2 LAL-HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE---VQIDILDTAGQEDYAAIRDNYFRSGE   77 (168)
T ss_dssp             CCE-EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEE---EEEEEEECCC---CHHHHHHHHHHCS
T ss_pred             CCC-EEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCEEECCCCCEE---EEEECCCCCCCHHHCCCCCCCHHCCH
T ss_conf             660-57899827997789999998638447653432010101002566624---64200234560111222310000100


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66645565540101368999999999999999973278988999999999999998504555666655344567666776
Q Ver_Hs_NP_0572  141 LKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKD  220 (523)
Q Consensus       141 i~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d  220 (523)
                          .+++|.|.+.+.++ +.+..|...+......                                             
T Consensus        78 ----~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~---------------------------------------------  107 (168)
T 1u8z_A           78 ----GFLCVFSITEMESF-AATADFREQILRVKED---------------------------------------------  107 (168)
T ss_dssp             ----EEEEEEETTCHHHH-HHHHHHHHHHHHHHCC---------------------------------------------
T ss_pred             ----HEEEHHHHHCCCCH-HHHHHHHHHHHHCCCC---------------------------------------------
T ss_conf             ----00001111100325-7899999754320379---------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             53447888762300588327998507412555542057747899999999999999718768883266367899999999
Q Ver_Hs_NP_0572  221 DSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYI  300 (523)
Q Consensus       221 ~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl  300 (523)
                                     ..+|++||++|+|.           .++..+-.+-++.++-++|+..+.||++.+.|++-+..+|
T Consensus       108 ---------------~~~piiiv~nK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~gi~e~f~~i  161 (168)
T 1u8z_A          108 ---------------ENVPFLLVGNKSDL-----------EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             ---------------TTSCEEEEEECGGG-----------GGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             ---------------CCCEEEEECCCHHH-----------HHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             ---------------98379971452012-----------3311543789999999659958998616887888999999


Q ss_pred             HHHH
Q ss_conf             9876
Q Ver_Hs_NP_0572  301 VQKL  304 (523)
Q Consensus       301 ~HrL  304 (523)
                      ...+
T Consensus       162 ~~~i  165 (168)
T 1u8z_A          162 MREI  165 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999


No 89 
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae)} SCOP: d1g16b_ d1g16c_ d1g16d_
Probab=98.66   E-value=1.2e-07  Score=75.34  Aligned_columns=159  Identities=21%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             588973699767899999742014688865-2145640450000432524636865862432455567870026664556
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVM  147 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVv  147 (523)
                      .|+++|..++|||||+.++...+-...... .+..+....-...+...++.+|-..|...+..+.+..+..-.    .++
T Consensus         4 Ki~iiG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~----~~i   79 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAM----GII   79 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEE----EEE
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHCCCC----EEE
T ss_conf             8999807998799999998648006762344421578999987287489997306883001111044504884----899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55401013689999999999999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  148 LVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       148 IvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      +|.|.+.|-++ +.+.+|++.++..-..                                                    
T Consensus        80 ~v~d~~~~~s~-~~~~~~~~~i~~~~~~----------------------------------------------------  106 (166)
T d1g16a_          80 LVYDITDERTF-TNIKQWFKTVNEHAND----------------------------------------------------  106 (166)
T ss_dssp             EEEETTCHHHH-HTHHHHHHHHHHHSCT----------------------------------------------------
T ss_pred             EEEECCCCCHH-HHHHHHHHHHHHHCCC----------------------------------------------------
T ss_conf             98513463102-3433678999973047----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                               .+|++||++|+|.            +...+.++-++.++-.++...+.+|++.+.+++-+...|.+.+|
T Consensus       107 ---------~~~iivv~nK~Dl------------~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gi~e~f~~l~~~i~  163 (166)
T d1g16a_         107 ---------EAQLLLVGNKSDM------------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ  163 (166)
T ss_dssp             ---------TCEEEEEEECTTC------------TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ---------CCCEEEEECCCCH------------HHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ---------7530100000002------------21068689999999964992899961589888899999999999


No 90 
>1gwn_A RHO-related GTP-binding protein RHOE; inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.66   E-value=4.2e-07  Score=71.60  Aligned_columns=188  Identities=18%

Q ss_pred             HHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCC
Q ss_conf             99998864144542578765889736997678999997420146888652145640450000432524636865862432
Q Ver_Hs_NP_0572   50 SCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHK  129 (523)
Q Consensus        50 ssiL~~v~t~~~~klp~~KnILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~  129 (523)
                      |+.....+.....+-=..| |+++|+.++|||||+.+|..-.-..+....-...+...-...+....+.+|-..|...+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~K-I~liG~~~vGKTSli~~l~~~~~~~~~~~ti~~~~~~~~~~~~~~~~i~i~Dt~G~~~~~   90 (205)
T 1gwn_A           12 SGLVPRGSHMDPNQNVKCK-IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD   90 (205)
T ss_dssp             ---------------CEEE-EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT
T ss_pred             CCCCCCCCCCCCCCCCEEE-EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCCCC
T ss_conf             3557655578888873289-999816998789999998628447653430244589999863478865431242223443


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             45556787002666455655401013689999999999999999732789889999999999999985045556666553
Q Ver_Hs_NP_0572  130 GLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQ  209 (523)
Q Consensus       130 ~LLK~aLt~~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~  209 (523)
                      .+.+..+..-.    .+++|.|.+.+.++-.-++.|...++.+-..                                  
T Consensus        91 ~~~~~~~~~ad----~~ilv~dv~~~~Sf~~~~~~~~~~i~~~~~~----------------------------------  132 (205)
T 1gwn_A           91 NVRPLSYPDSD----AVLICFDISRPETLDSVLKKWKGEIQEFCPN----------------------------------  132 (205)
T ss_dssp             TTGGGGCTTCS----EEEEEEETTCHHHHHHHHHTHHHHHHHHCTT----------------------------------
T ss_pred             CCCCCCCCCCE----EEEEEEECCCHHHHHHHHHHHHHHHHHHCCC----------------------------------
T ss_conf             23410012201----1245763254667778888889999863578----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHCCEEEE-ECC
Q ss_conf             4456766677653447888762300588327998507412555542057747899999-99999999971876888-326
Q Ver_Hs_NP_0572  210 RRNTASQEDKDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFF-QSHIRKFCLRYGAALIY-TSV  287 (523)
Q Consensus       210 ~~~~~~~~~~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfI-qq~LR~icL~YGAaLiY-TS~  287 (523)
                                                  +|+++|.+|+|..+......+...+.-..| .+..+.+|-++++-.+| ||+
T Consensus       133 ----------------------------~piiiVgNK~Dl~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~~~~~~~E~SA  184 (205)
T 1gwn_A          133 ----------------------------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  184 (205)
T ss_dssp             ----------------------------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             ----------------------------CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf             ----------------------------7279986055765320257888752123568899999999718953899751


Q ss_pred             CCHHH-HHHHHHHHHHHH
Q ss_conf             63678-999999999876
Q Ver_Hs_NP_0572  288 KENKN-IDLVYKYIVQKL  304 (523)
Q Consensus       288 ke~kn-l~LLykYl~HrL  304 (523)
                      +.+.| ++-+...+....
T Consensus       185 ~~~~n~i~evF~~~~~~i  202 (205)
T 1gwn_A          185 LQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
T ss_conf             478715899999999999


No 91 
>cd04127 Rab27A Rab27a subfamily.  The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b.  Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions.  Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder.  When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated 
Probab=98.66   E-value=4.2e-07  Score=71.58  Aligned_columns=160  Identities=18%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHH--------HHCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             88973699767899999742---0146888652145640450000432--------524636865862432455567870
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQ--------TRCNVWILDGDLYHKGLLKFSLDA  138 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~--------ar~~vWiLdg~~~~~~LLK~aLt~  138 (523)
                      |+++|+.++|||+|+.++..   .+.+...-|+++..-.+.-+.++..        -.+.+|=..|...+.+|.+....-
T Consensus         7 ivviGd~~vGKTsli~r~~~~~f~~~~~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~   86 (180)
T cd04127           7 FLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRD   86 (180)
T ss_pred             EEEEECCCCCHHHHHHHHHCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf             99980698438999888763832776354011135577999712554332457727999997247762145676886049


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             02666455655401013689999999999999999732789889999999999999985045556666553445676667
Q Ver_Hs_NP_0572  139 VSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQED  218 (523)
Q Consensus       139 ~si~~TLVvIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~  218 (523)
                      -+    .++||-|.+.+.++-. ++.|+..++.+...                                           
T Consensus        87 a~----~~ilvydit~~~Sf~~-~~~w~~~i~~~~~~-------------------------------------------  118 (180)
T cd04127          87 AM----GFLLIFDLTNEQSFLN-VRNWMSQLQTHAYC-------------------------------------------  118 (180)
T ss_pred             CC----EEEEEEECCCHHHHHH-HHHHHHHHHHHCCC-------------------------------------------
T ss_conf             98----8999974689668899-99999999861367-------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf             76534478887623005883279985074125555420577478999999999999997187688832663678999999
Q Ver_Hs_NP_0572  219 KDDSVVVPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYK  298 (523)
Q Consensus       219 ~d~~v~lPLgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLyk  298 (523)
                                       -.+|+++|++|+|.           +++..+-..-.+.||-.++...|.||+|.+.|++-+..
T Consensus       119 -----------------~~~~ivlVgNK~Dl-----------~~~r~Vs~~e~~~~a~~~~~~~~e~SAk~~~nV~e~F~  170 (180)
T cd04127         119 -----------------ENPDIVLCGNKADL-----------EDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVE  170 (180)
T ss_pred             -----------------CCCEEEEEECCCCC-----------CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf             -----------------87507887202355-----------21122487899999996599599997147988789999


Q ss_pred             HHHHHHC
Q ss_conf             9998760
Q Ver_Hs_NP_0572  299 YIVQKLY  305 (523)
Q Consensus       299 Yl~HrLy  305 (523)
                      +|.-+++
T Consensus       171 ~l~~~i~  177 (180)
T cd04127         171 RLLDLVM  177 (180)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 92 
>cd04140 ARHI_like ARHI subfamily.  ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties.  ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer.  ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity.   Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity.  ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis.  Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid.  Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.  Due to
Probab=98.66   E-value=7.4e-07  Score=69.88  Aligned_columns=159  Identities=23%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+++|+.++|||+|+.++..-+-...-.. ++-.|-.+...+... -.+.+|-..|...+..|.+.-+.--+    .+||
T Consensus         4 IvliGd~~VGKTsli~r~~~~~F~~~y~~ti~~~~~~~i~~~~~~-~~l~i~Dt~G~e~~~~l~~~~~~~a~----~~il   78 (165)
T cd04140           4 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNI-CTLQITDTTGSHQFPAMQRLSISKGH----AFIL   78 (165)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECEEEEEEEECCCE-EEEEEECCCCCCCHHHHHHHHHCCCC----EEEE
T ss_conf             899807996589999887628206654542001157788636948-99997037763102356688621898----5899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5401013689999999999999999-732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHV-DKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi-~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      |-|.+.+.+| +.++.|...+.+.- +...                                                  
T Consensus        79 vydit~~~Sf-~~i~~~~~~i~~~~~~~~~--------------------------------------------------  107 (165)
T cd04140          79 VYSVTSKQSL-EELKPIYELICEIKGNNIE--------------------------------------------------  107 (165)
T ss_pred             EEECCCHHHH-HHHHHHHHHHHHHHCCCCC--------------------------------------------------
T ss_conf             9875997788-9999999999986224889--------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             87623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                               .+|+++|.+|+|    |+.++.-..|+       .+.+|-++++..|.||+|.+.|++.+.+.|+..+
T Consensus       108 ---------~ipiilvGNK~D----l~~~r~V~~~e-------~~~~a~~~~~~~~E~SAk~~~nv~~~F~~l~~l~  164 (165)
T cd04140         108 ---------KIPIMLVGNKCD----ESHKREVSSNE-------GAACATEWNCAFMETSAKTNHNVQELFQELLNLE  164 (165)
T ss_pred             ---------CCEEEEEECCCC----CCCCCCCCHHH-------HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             ---------857999503114----01046689899-------9999995699589997148988789999999851


No 93 
>e2bcgy_ c.37.1.8 (Y:) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae)} SCOP: d1ukvy_ u2fola1
Probab=98.65   E-value=4.6e-07  Score=71.31  Aligned_columns=159  Identities=16%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+|+|+.++|||||+.+|.+.+-...... .........=...+..-++.+|-..|...+..+.......-.    .+++
T Consensus         9 IviiG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~ad----~iil   84 (194)
T e2bcgy_           9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH----GIII   84 (194)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHCCCCC----EEEE
T ss_conf             899826998799999998638106762453035788875046645789988516786300011143405886----7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.++++-. +..|+.-+......                                                     
T Consensus        85 v~d~~~~~s~~~-~~~~~~~i~~~~~~-----------------------------------------------------  110 (194)
T e2bcgy_          85 VYDVTDQESFNG-VKMWLQEIDRYATS-----------------------------------------------------  110 (194)
T ss_pred             EEECCCCCHHHH-HHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             820457102333-45789999862377-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                              .+|++||.+|+|..           ++..+-..-++.++-.+++..+.||++.+.|++-+...|.+.++
T Consensus       111 --------~~~iivv~nK~D~~-----------~~~~v~~~~~~~~~~~~~~~~~e~SAk~g~gV~e~f~~i~~~i~  168 (194)
T e2bcgy_         111 --------TVLKLLVGNKCDLK-----------DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK  168 (194)
T ss_pred             --------CCCEEEEEECCCCC-----------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             --------52024455023510-----------02566889999999864971899862689888899999999999


No 94 
>cd04114 Rab30 Rab30 subfamily.  Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.  Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.  Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.65   E-value=4.6e-07  Score=71.29  Aligned_columns=158  Identities=18%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+++|+.++|||+|+.|+..-+-..+-.. .+-.|....-.-.+..-.+.+|=..|...+..|.+.-+.--+    .++|
T Consensus        10 ivliGd~~VGKTsli~rf~~~~f~~~~~~Ti~~~~~~k~~~~~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~----~~ii   85 (169)
T cd04114          10 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSAN----ALIL   85 (169)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCC----EEEE
T ss_conf             999826984489999998628678543311221147889988895999999865898024677687604888----3899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |-|.+.+=++ +.|.+|++-++++...                                                     
T Consensus        86 vydit~~~Sf-~~i~~w~~~i~~~~~~-----------------------------------------------------  111 (169)
T cd04114          86 TYDITCEESF-RCLPEWLREIEQYANN-----------------------------------------------------  111 (169)
T ss_pred             EEECCCHHHH-HHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_conf             9655984688-9999999999874069-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                              .+|+++|++|+|..           ++..+-.+-.+.+|-++|...|-||+|.+.|++.+..+|.-+|
T Consensus       112 --------~~~iilVGNK~Dl~-----------~~r~v~~~~~~~~a~~~~~~~~e~SAktg~nV~~~F~~la~~i  168 (169)
T cd04114         112 --------KVITILVGNKIDLA-----------ERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             --------CCEEEEEECCCCCC-----------CCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             --------94189981143211-----------0236587899999996498399997037988889999999982


No 95 
>e1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxID:10090]}
Probab=98.65   E-value=3.4e-07  Score=72.18  Aligned_columns=155  Identities=21%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEE-CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             88973699767899999742014688865-214564045000043252463686-5862432455567870026664556
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWIL-DGDLYHKGLLKFSLDAVSLKDTLVM  147 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiL-dg~~~~~~LLK~aLt~~si~~TLVv  147 (523)
                      |+|+|+.++|||||+.++.+.+-..+... .+..|....-...+...++.+|.. ....+...+++..+..-.    .++
T Consensus         5 I~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~----~~i   80 (165)
T e1z06a1           5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH----AVV   80 (165)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHCCCC----EEE
T ss_conf             9998269987899999986382367624310000102676418917999985035753012343143301433----689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55401013689999999999999999732789889999999999999985045556666553445676667765344788
Q Ver_Hs_NP_0572  148 LVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPL  227 (523)
Q Consensus       148 IvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPL  227 (523)
                      ||.|++.+.++-. +++|+..++.+...                                                    
T Consensus        81 lv~d~~~~~s~~~-i~~~~~~i~~~~~~----------------------------------------------------  107 (165)
T e1z06a1          81 FVYDMTNMASFHS-LPAWIEECKQHLLA----------------------------------------------------  107 (165)
T ss_pred             EEEECCCCCCHHH-HHHHHHHHHHHHCC----------------------------------------------------
T ss_conf             9875056565678-98899999986034----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHH---HHHHHHHHH
Q ss_conf             8762300588327998507412555542057747899999999999999718768883266367---899999999
Q Ver_Hs_NP_0572  228 GADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENK---NIDLVYKYI  300 (523)
Q Consensus       228 geg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~k---nl~LLykYl  300 (523)
                              -++|++||++|+|.           .++..+..+.++.||-+|++.++.||+|...   |++-+..-|
T Consensus       108 --------~~~piiivgnK~Dl-----------~~~~~v~~~~~~~~~~~~~~~~~e~SAK~~~~~~nv~~~f~~l  164 (165)
T e1z06a1         108 --------NDIPRILVGNKCDL-----------RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_pred             --------CCCCEEEEEECCCC-----------HHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf             --------78838999715684-----------0004679899999999659949998537787774778999870


No 96 
>cd01864 Rab19 Rab19 subfamily.  Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.  Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.65   E-value=3.7e-07  Score=71.97  Aligned_columns=156  Identities=20%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.++..   .+.+...-|.+|..-.+.-+  +..-.+.+|-..|...+..|.+.-..--+    .+
T Consensus         6 ivivGd~~vGKTsli~rf~~~~F~~~~~~tig~~~~~k~i~~~--~~~v~l~iwDt~G~e~~~~l~~~~~~~~~----~~   79 (165)
T cd01864           6 IILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE--GKRVKLQIWDTAGQERFRTITQSYYRSAN----GA   79 (165)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEC--CEEEEEEEEECCCCCHHHHHHHHHCCCCC----EE
T ss_conf             9998079944899999876282077667711257789999988--95899999754887013577686426998----79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||-|.+.+-++-. |++|+.-++++..+                                                   
T Consensus        80 ilvydit~~~Sf~~-l~~w~~~i~~~~~~---------------------------------------------------  107 (165)
T cd01864          80 IIAYDITRRSSFES-VPHWIEEVEKYGAS---------------------------------------------------  107 (165)
T ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHCCCC---------------------------------------------------
T ss_conf             99987599779999-99988889851698---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEE-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf             88762300588327998507412555542057747899999999999999718768-8832663678999999999876
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAAL-IYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaL-iYTS~ke~knl~LLykYl~HrL  304 (523)
                                .+|+++|.+|+|.           .++..+-..-.+.+|-++|+-- |-||+|.+.|++-+..+|.+.|
T Consensus       108 ----------~~~ivlVGNK~Dl-----------~~~r~V~~~~~~~~a~~~~~~~~~E~SAk~~~nv~e~F~~la~~i  165 (165)
T cd01864         108 ----------NVVLLLIGNKCDL-----------EEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATEL  165 (165)
T ss_pred             ----------CCEEEEEECCCCC-----------CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC
T ss_conf             ----------9579997242110-----------003554578999999964994899974048989889999999829


No 97 
>2ce2_X GTPase HRAS; guanine nucleotide binding protein, fluorescence, membrane, signaling protein, disease mutation, golgi stack, GTP- binding; HET: GDP XY2; 1.0A {Homo sapiens}
Probab=98.65   E-value=2e-07  Score=73.83  Aligned_columns=160  Identities=16%

Q ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             58897369976789999974201468886521456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        69 nILvLG~~~sGKTtLl~~Lq~~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      .|+++|..++||||||.++.+-+-........=..+...-...+..-+..+|...|...+..+.+.....-.+    +++
T Consensus         5 Ki~iiG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~----~i~   80 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG----FLC   80 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSE----EEE
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCCHHHHHHEE----EEE
T ss_conf             6899807998789999998638325553430000256778643435531244046764332111001110001----110


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |.|.+.+.++-. +.+|+.-++.+.....+                                                  
T Consensus        81 v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~--------------------------------------------------  109 (166)
T 2ce2_X           81 VFAINNTKSFED-IHQYREQIKRVKDSDDV--------------------------------------------------  109 (166)
T ss_dssp             EEETTCHHHHHH-HHHHHHHHHHHHTCSCC--------------------------------------------------
T ss_pred             EEECCCHHHHHH-HHHHHHHHHHHCCCCCC--------------------------------------------------
T ss_conf             121341122344-44566555530278984--------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             76230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                |++||++|+|.            ++.....+-++.++-.++..++.||++.+.|++-+...|...++
T Consensus       110 ----------piiiv~nK~Dl------------~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~i~~~i~  164 (166)
T 2ce2_X          110 ----------PMVLVGNKSDL------------AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             ----------CEEEEEECTTC------------SCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             ----------EEEEEECCCCH------------HHCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ----------89995025450------------11034078999999964981899862688687899999999997


No 98 
>cd04124 RabL2 RabL2 subfamily.  RabL2 (Rab-like2) subfamily.  RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share  98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.65   E-value=8.8e-07  Score=69.39  Aligned_columns=154  Identities=24%

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCC-CEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88973699767899999742014688865-21456404500004325246368658624324555678700266645565
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQGIEEYKKGRG-LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVML  148 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~~e~~kKg~g-LeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLVvI  148 (523)
                      |+++|+.++|||+|+.|+..-+-..+-.. .+..++...-.-.+..-.+.+|=..|...+.++.+....--+    .++|
T Consensus         3 iiliGd~~VGKTsli~r~~~~~f~~~~~~t~~~~~~~k~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~a~----~~il   78 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAH----ACIL   78 (161)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHCCCCC----EEEE
T ss_conf             899806994488988786538637662353256789999999886999999745784110356674302478----5899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54010136899999999999999997327898899999999999999850455566665534456766677653447888
Q Ver_Hs_NP_0572  149 VVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVPLG  228 (523)
Q Consensus       149 vlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lPLg  228 (523)
                      |-|.+.+.++ +.|.+|+.-++++-..                                                     
T Consensus        79 vfDit~~~Sf-~~l~~W~~~i~~~~~~-----------------------------------------------------  104 (161)
T cd04124          79 VFDVTRKITY-KNLSKWYEELREYRPE-----------------------------------------------------  104 (161)
T ss_pred             EEECCCHHHH-HHHHHHHHHHHHHCCC-----------------------------------------------------
T ss_conf             9866996688-9999999999984699-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7623005883279985074125555420577478999999999999997187688832663678999999999876
Q Ver_Hs_NP_0572  229 ADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKL  304 (523)
Q Consensus       229 eg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrL  304 (523)
                               +|+++|++|+|.           +..   +.+--+.++-+++...|+||+|.+.|++.+.+-+.-..
T Consensus       105 ---------~p~ilVGNK~Dl-----------~~~---~~~~~~~~a~~~~~~~fetSAk~g~nV~e~F~~~~~~~  157 (161)
T cd04124         105 ---------IPCIVVANKIDL-----------DPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             ---------CEEEEEECCCCC-----------CHH---HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             ---------379998237656-----------435---68999999996599199997268988789999999999


No 99 
>cd04125 RabA_like RabA-like subfamily.  RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells.  The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression.  The function of RabA remains unknown.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.  Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.65   E-value=5.7e-07  Score=70.70  Aligned_columns=157  Identities=24%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+++|+.++|||+|+.|+..   .+.+...-|.+|..-.+.-+++  .-.+.+|=..|...+..|.+.-..--+    .+
T Consensus         3 IvviGd~~VGKTsli~r~~~~~f~~~~~~Tig~d~~~k~i~~~~~--~v~l~iwDtaGqe~~~~l~~~~~~~a~----~~   76 (188)
T cd04125           3 VVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK--IIKLQIWDTNGQERFRSLNNSYYRGAH----GY   76 (188)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCE--EEEEEEEECCCCCHHHHHHHHHHCCCC----EE
T ss_conf             899826995489999987628017764673021257889998684--999998756998202567687630898----59


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      |||-|.+.+.+|-. ++.|+.-++.+...                                                   
T Consensus        77 ilvyDit~~~Sf~~-i~~w~~~i~~~~~~---------------------------------------------------  104 (188)
T cd04125          77 LLVYDVTDQESFEN-LKFWINEINRYARE---------------------------------------------------  104 (188)
T ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHHCCC---------------------------------------------------
T ss_conf             99986699789999-99999999861699---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                .+|+++|++|+|.           .++..+-..-.+.||-++|+..|-||++.+.|++-+..+|.-.++
T Consensus       105 ----------~~~~ilvgNK~DL-----------~~~r~V~~~~~~~~a~~~~~~~fEtSAktg~nV~e~F~~l~~~il  162 (188)
T cd04125         105 ----------NVIKVIVANKSDL-----------VNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLII  162 (188)
T ss_pred             ----------CCEEEEEEECCCC-----------HHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ----------9689998513523-----------012336999999999856992999962589888899999999999


No 100
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65   E-value=1.1e-07  Score=75.50  Aligned_columns=157  Identities=25%

Q ss_pred             EEEEECCCCCHHHHHHHHHH---CCCCCCCCCCEEEEEECCCHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88973699767899999742---014688865214564045000043252463686586243245556787002666455
Q Ver_Hs_NP_0572   70 VLLLGEDGAGKTSLIRKIQG---IEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLV  146 (523)
Q Consensus        70 ILvLG~~~sGKTtLl~~Lq~---~e~~kKg~gLeY~Yl~V~DeDrdd~ar~~vWiLdg~~~~~~LLK~aLt~~si~~TLV  146 (523)
                      |+|+|+.++|||||+.++.+   .+.+...-+..|...-..|.-.   -++++|-..|...+..+.+..+..-.    .+
T Consensus        11 I~viG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~~----~~   83 (199)
T 2gf0_A           11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSV---CTLQITDTTGSHQFPAMQRLSISKGH----AF   83 (199)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEE---EEEEEEECCGGGSCHHHHHHHHHHCS----EE
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCC---CEEEEEECCCCCHHHHHHHHHCCCCC----EE
T ss_conf             999707998799999998628426763430222578998506622---20235421221100234321102222----00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65540101368999999999999999973278988999999999999998504555666655344567666776534478
Q Ver_Hs_NP_0572  147 MLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVVP  226 (523)
Q Consensus       147 vIvlDmS~PWt~m~qL~~Wi~vLrehi~~L~i~~ee~ke~~e~~i~~~q~y~epg~d~~~s~~~~~~~~~~~~d~~v~lP  226 (523)
                      +||.|.+.+.++ ..+..|++.+.++-....                                                 
T Consensus        84 iiv~d~~~~~S~-~~~~~~~~~~~~~~~~~~-------------------------------------------------  113 (199)
T 2gf0_A           84 ILVFSVTSKQSL-EELGPIYKLIVQIKGSVE-------------------------------------------------  113 (199)
T ss_dssp             EEEEETTCHHHH-HTTHHHHHHHHHHHSCGG-------------------------------------------------
T ss_pred             EEEEECHHHHHH-HHHHHHHHHHHHHCCCCC-------------------------------------------------
T ss_conf             011101023467-776653100033202347-------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             8876230058832799850741255554205774789999999999999971876888326636789999999998760
Q Ver_Hs_NP_0572  227 LGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFFQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIVQKLY  305 (523)
Q Consensus       227 Lgeg~Lt~NLGiPivVVctKsD~ie~LEKe~~y~dE~fDfIqq~LR~icL~YGAaLiYTS~ke~knl~LLykYl~HrLy  305 (523)
                                ++|+++|++|+|.            .+.++-..-++.||-.+|...|.||++...+++-+..+|...+.
T Consensus       114 ----------~~piilvgnK~Dl------------~~~~v~~e~~~~~~~~~~~~~~e~Sa~~g~gi~~~f~~i~~~~~  170 (199)
T 2gf0_A          114 ----------DIPVMLVGNKCDE------------TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             ----------GSCEEEEEECTTC------------SSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             ----------CCEEEEHHHHHHH------------HCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ----------7202201001101------------10266788999999965970899861688677899999999999


Done!