*This document is not part of the official presentation of
the Institute of Molecular Pathology. The contents of this page do not
represent the opinions of IMP representatives.
Database Search with the Brix Protein
BLASTP 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= xen_bx24
(339 letters)
Database: nr
618,844 sequences; 195,544,254 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melan... 286 2e-76
sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHR... 277 1e-73
ref|NP_014565.1| Essential nucleolar protein required for biogen... 252 4e-66
emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schiz... 242 5e-63
gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175... 237 1e-61
gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana] 234 9e-61
ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens] >g... 158 7e-38
gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melan... 42 0.016
pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment) 41 0.026
dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens] 40 0.031
emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapi... 39 0.072
emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora cra... 38 0.12
dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens] 38 0.21
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CH... 37 0.39
pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegan... 36 0.60
sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CH... 36 0.60
dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus] 33 4.7
pir||T39008 probable mating protein - fission yeast (Schizosacch... 33 4.7
dbj|BAA81892.1| (AB026979) ten-m3 [Danio rerio] 32 9.6
>gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melanogaster]
Length = 359
Score = 286 bits (726), Expect = 2e-76
Identities = 135/229 (58%), Positives = 179/229 (77%), Gaps = 2/229 (0%)
Query: 39 IVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNE 98
+VP + KW NK+RVL+FS+RGI+ R RHLM+D+++LMPH R E+KM+R L VVNE
Sbjct: 36 VVPKKARKEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNE 95
Query: 99 VCEMKNCNKCIYFEAKKKQDLYMWLSNS--PEGPSAKFLVQNIHTLAELKMSGNCLKGSR 156
+CEMK+CNK + FE ++K+DLYMW+SN+ GPSAKFL++NIHT+AELKM+GNCL+GSR
Sbjct: 96 MCEMKHCNKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSR 155
Query: 157 PILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII 216
P+LSFD FD P LLKEL Q + P +HP+SQPFVDH+FTF+ D RIWFRN+QI+
Sbjct: 156 PLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQIL 215
Query: 217 EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLA 265
ED L E+GPR+V+N +KIF GSF G T++ENP Y SP+ R++++ A
Sbjct: 216 SEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKA 264
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
pir||S44853 K12H4.3 protein - Caenorhabditis elegans
gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank: CE5D1 (Z14791),
CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
putative [Caenorhabditis elegans]
Length = 352
Score = 277 bits (702), Expect = 1e-73
Identities = 121/213 (56%), Positives = 171/213 (79%), Gaps = 1/213 (0%)
Query: 49 WKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKC 108
W N+ERVL+ SRG + RTR+LM+D++ L+PH++ ++K+D++ L V+NE+ EMKNC K
Sbjct: 59 WTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKV 118
Query: 109 IYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDRE 168
+YFE++K++D Y+W+SN +GPS KFLV N+HT+ ELKMSGNCL+ SRP+LSFD AFD++
Sbjct: 119 MYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKK 178
Query: 169 PQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIAD-NRIWFRNYQIIEEDAALVEIGP 227
PQ L+K +L Q GTP +HPRSQPFVDH+F FS+ + ++IWFRN+QI++E L E+GP
Sbjct: 179 PQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGP 238
Query: 228 RFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRR 260
RFVL ++++F GSF G LY+NP+Y SPN+ RR
Sbjct: 239 RFVLEMVRLFAGSFEGAVLYDNPNYVSPNVIRR 271
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 252 bits (638), Expect = 4e-66
Identities = 121/232 (52%), Positives = 160/232 (68%), Gaps = 12/232 (5%)
Query: 48 KWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNK 107
++ NK+R L+ SSRG+N+R RHL+QDL L+PHSR E K+D K L +NE+ E+ NCN
Sbjct: 26 QFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNN 85
Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDR 167
++FEA+K QDLY+WLS P GP+ KF +QN+HT+ EL +GNCLKGSRP+LSFD F+
Sbjct: 86 VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145
Query: 168 EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----------- 216
P Y L+KELL F P +S+PF+DH+ +FSI D++IW R Y+I
Sbjct: 146 SPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEISHSTKNKEEYED 205
Query: 217 -EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
EED +LVEIGPRFV+ +I I +GSFGGP +YEN Y SPN+ R I+ A
Sbjct: 206 GEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAA 257
>emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schizosaccharomyces
pombe]
Length = 295
Score = 242 bits (611), Expect = 5e-63
Identities = 118/255 (46%), Positives = 168/255 (65%), Gaps = 8/255 (3%)
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
K++VL+ SSRG+ +R RHL+ DL S+MPHS+ ++K+D KD+L+ +NE+ E+ NCN +F
Sbjct: 42 KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFF 101
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQY 171
E+++++DLY+ ++ +P GP+ KF V+N+HT+ EL M+GN LKGSRPILSFD FD P
Sbjct: 102 ESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHL 161
Query: 172 ALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEED------AALVEI 225
++KELL Q FG P+ RS+PF+D + T +IAD +IWFRNY+I E + L+EI
Sbjct: 162 KVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEI 221
Query: 226 GPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAXXXXXXXXXXXXXXXXX 285
GPRFV+ +I I +GSFGGP +Y+N + S M R IR A
Sbjct: 222 GPRFVMTIINILEGSFGGPVIYKNDTFVSSTMVRAAIR--NQAAQRYVNRQESKLERQVR 279
Query: 286 XDRPVIPVDPTEAVF 300
+ VIP DP + VF
Sbjct: 280 AQQNVIPEDPLDNVF 294
>gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175 [Arabidopsis thaliana]
Length = 320
Score = 237 bits (599), Expect = 1e-61
Identities = 119/227 (52%), Positives = 160/227 (70%), Gaps = 14/227 (6%)
Query: 49 WKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRK-DKLFVVNEVCEMKNCNK 107
+KNKE+VL+ SR I+FR R LM ++ SL+PH + ++K++ K K +NE+ E+KN N
Sbjct: 53 FKNKEKVLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNS 112
Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDR 167
C++FE +K +DLYMW+ SP GPS KFLV+ +H + E+K++GN LKGSRP+L+F FD+
Sbjct: 113 CLFFECRKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDK 172
Query: 168 EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EEDA--- 220
+ + LLKE+LTQ+FG P+ H +S+P+ DH+F FSI D IWFRNYQI E D
Sbjct: 173 DAHWKLLKEMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAK 232
Query: 221 ------ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN R +
Sbjct: 233 GGLDKMTLIEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRAL 279
>gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana]
Length = 315
Score = 234 bits (592), Expect = 9e-61
Identities = 119/233 (51%), Positives = 159/233 (68%), Gaps = 14/233 (6%)
Query: 43 PVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRK-DKLFVVNEVCE 101
P ++NKE+VL+ SR INFR RHLM ++ SL+PH + ++K++ K + +NE+ E
Sbjct: 43 PAYASVFRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIE 102
Query: 102 MKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSF 161
+K + C++FE +K +DLYMW+ SP GPS KFLV +HT+ ELK++GN LKGSRP+L+F
Sbjct: 103 LKGSSSCLFFECRKHKDLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTF 162
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----E 217
F+ + + LLKE+LTQIFG P H +S+P+ DH+F FSI D+ IWFRNYQI E
Sbjct: 163 SSNFENDAHWKLLKEMLTQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNE 222
Query: 218 EDA---------ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
D L+E+GPRF LN IKIF GSFGG TLYENP Y SPN R +
Sbjct: 223 SDKIARGDLDKMTLIEVGPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRAL 275
>ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens]
ref|XP_003882.1| hypothetical protein FLJ11100 [Homo sapiens]
dbj|BAA92003.1| (AK001962) unnamed protein product [Homo sapiens]
Length = 129
Score = 158 bits (397), Expect = 7e-38
Identities = 89/131 (67%), Positives = 99/131 (74%), Gaps = 11/131 (8%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSE----QEATAGEEFI-----VPPPVSEGKWKN 51
M+A KRKR A KK K+ +E + ATA E +P PV +GKWKN
Sbjct: 1 MAATKRKRRG--GFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKN 58
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
KER+LIFSSRGINFRTRHLMQDLR LMPHS+A+TKMDRKDKLFV+NEVCEMKNCNKCIYF
Sbjct: 59 KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYF 118
Query: 112 EAKKKQDLYMW 122
EAKKKQDLYMW
Sbjct: 119 EAKKKQDLYMW 129
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 41.5 bits (96), Expect = 0.016
Identities = 45/215 (20%), Positives = 99/215 (45%), Gaps = 17/215 (7%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFE 112
++++ +S + R + M++LR ++P+++ +M+R + +L + C N +
Sbjct: 82 KIMLTTSHNPSSRLKMFMKELRLIIPNAQ---QMNRGNYQLTTLMHACRANNVTDFLIVH 138
Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
+ + + + P GP+A F + ++ ++ G+ + +P L F+ + P
Sbjct: 139 EHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDIGH-MSEQKPHLIFNNF--KTPIGL 195
Query: 173 LLKELLTQIFGTPRYHP-RSQPFVDHIFTFSIADNRIWFRN--YQIIEEDAALVEIGPRF 229
++L +F P+ + R F++H ++ I FR+ Y+ + ++ L E+GPRF
Sbjct: 196 RTVKILKHLFPVPKENSQRVMSFLNH-------NDSIIFRHHQYKYVNKELELTEVGPRF 248
Query: 230 VLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRL 264
L L +I G+ + P M+ RL
Sbjct: 249 SLKLYQIKLGTLENIKAADTEWINRPYMNTSQKRL 283
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 40.8 bits (94), Expect = 0.026
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 14/192 (7%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
++LI +S + RT L + L +++P+S + R L + C ++ I
Sbjct: 50 KILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINE 107
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 108 DRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTR------ 161
Query: 174 LKELLTQIFGTPRYHPRSQPFVD-HIFTFSIADNRIWFRNYQII---EEDAALVEIGPRF 229
L + ++F + P + F+ + TF + I+FR ++ I E+ + E+GPRF
Sbjct: 162 LGHSIGRMFAS--LFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRF 219
Query: 230 VLNLIKIFKGSF 241
L L + KG+F
Sbjct: 220 TLKLRSLQKGTF 231
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 40.4 bits (93), Expect = 0.031
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 14/192 (7%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
++LI +S + RT L + L +++P+S + R L + C ++ I
Sbjct: 143 KILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINE 200
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 201 DRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTR------ 254
Query: 174 LKELLTQIFGTPRYHPRSQPFVD-HIFTFSIADNRIWFRNYQII---EEDAALVEIGPRF 229
L + ++F + P + F+ + TF + I+FR ++ I E+ + E+GPRF
Sbjct: 255 LGHSIGRMFAS--LFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRF 312
Query: 230 VLNLIKIFKGSF 241
L L + KG+F
Sbjct: 313 TLKLRSLQKGTF 324
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 39.2 bits (90), Expect = 0.072
Identities = 31/107 (28%), Positives = 55/107 (50%), Gaps = 11/107 (10%)
Query: 136 VQNIHTLAELKMSGNCLKGSRPILSF-DPAFDREPQYALLKELLTQIFGTPRYHPRSQPF 194
++N +L ++K S C +G++P+L F F+ Y LK LLT F P
Sbjct: 110 IENFVSLKDIKNS-KCPEGTKPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAG 168
Query: 195 VDHIFTFSIADNRIWFRNYQIIEEDAA-------LVEIGPRFVLNLI 234
++++ F+ + +I+FR Y+++ + + L EIGP LNL+
Sbjct: 169 LEYVLHFTALNGKIYFRRYKLLLKKSGCRTPRIELEEIGPS--LNLV 213
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 38.4 bits (88), Expect = 0.12
Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 18/237 (7%)
Query: 12 PEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLM 71
PE+A + K+ +K G+ + SE R+L+ +SR + R
Sbjct: 44 PEIAKD-KELRKDFDYDVSRDVNGDAIDIDDEYSELSGVIDPRILVTTSRDPSSRLGQFS 102
Query: 72 QDLRSLMPHSRAETKMDRKDKLFVVNEV---CEMKNCNKCIYFEAKKKQDLYMWLSNSPE 128
+++R L+P S +++R + V+ ++ + +N + + M +S+ P
Sbjct: 103 KEIRLLLPTS---VRLNRGN--LVLEDLVGAAKAQNLTDVVLLHEHRGVPTAMTISHFPH 157
Query: 129 GPSAKFLVQNIHTLAELKMS-GNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRY 187
GP+ + N+ A++ S + S P L F+ F + ++K +L +F P
Sbjct: 158 GPTLMVSLHNVVLRADIPKSIKGTVSESYPRLIFE-GFSTKLGERVVK-ILKHLF--PPR 213
Query: 188 HPRSQPFV-DHIFTFSIADNRIWFRNYQIIE---EDAALVEIGPRFVLNLIKIFKGS 240
P +P V + + TF D+ I R++ + + L E+GPRF + KI G+
Sbjct: 214 EPTQKPNVGNRVITFVNNDDTIEVRHHVYVRTSYDSVELSEVGPRFTMKPFKITMGT 270
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 37.6 bits (86), Expect = 0.21
Identities = 35/147 (23%), Positives = 67/147 (44%), Gaps = 24/147 (16%)
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFL---------------VQNIHTLAELKMSGNCLKG 154
+F K L+M+ S++ + P+ + ++N +L ++K S C +G
Sbjct: 80 FFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNS-KCPEG 138
Query: 155 SRPILSF-DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNY 213
++P+L F FD Y LK LL F P ++++ F+ + +I+FR+Y
Sbjct: 139 TKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSY 198
Query: 214 QIIEEDAA-------LVEIGPRFVLNL 233
+++ + + L E+GP L L
Sbjct: 199 KLLLKKSGCRTPRIELEEMGPSLDLVL 225
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 36.9 bits (84), Expect = 0.39
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 20/203 (9%)
Query: 45 SEGKWKNKE--RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEM 102
SE +W + +++I +SR + R + ++++ + P+++ + K V + +
Sbjct: 68 SEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVV--QASKA 125
Query: 103 KNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFD 162
++ I F + M + + P GP+A F + N+ ++ G + P L FD
Sbjct: 126 QDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFD 184
Query: 163 PAFDREPQYALLKELLTQIFGTPRYH--PRSQPFVDHIFTFSIADNRIWFRNYQIIEE-- 218
L L F T H P +P I TFS +++ I FR++ E
Sbjct: 185 N----------LNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTEND 234
Query: 219 -DAALVEIGPRFVLNLIKIFKGS 240
+ L E GPRF L +I G+
Sbjct: 235 GEVELTEAGPRFELKPYQIKLGT 257
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
Length = 746
Score = 36.1 bits (82), Expect = 0.60
Identities = 52/211 (24%), Positives = 95/211 (44%), Gaps = 33/211 (15%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLF--VVNEVCEMKNCNKCIYF 111
+V+I + T +L+ +P+S T RK+ L ++ + E + + +
Sbjct: 521 KVMITMTPKAKITTFKFCFELQKCIPNSEIFT---RKNVLLKTIIEQAKEREFTDLLVVH 577
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLKGSRPILSFDPAF 165
E +KK + ++ + PEGP+A F + ++ +LK+ CLK + F +
Sbjct: 578 EDRKKPNGIIF-CHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGEST 636
Query: 166 DREPQYAL----------LKELLTQIF-GTPRYHPRSQPFVDHIFTFSIADNRIWFRN-- 212
P+ L + +L +F P++ R + TF + I+FR+
Sbjct: 637 SHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGR------RVVTFHNQRDYIFFRHHR 690
Query: 213 YQIIEE--DAALVEIGPRFVLNLIKIFKGSF 241
Y+ +E AAL+E+GPRF L L + KG+F
Sbjct: 691 YEFKKEGSKAALLELGPRFTLRLKWLQKGTF 721
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
Length = 754
Score = 36.1 bits (82), Expect = 0.60
Identities = 52/211 (24%), Positives = 95/211 (44%), Gaps = 33/211 (15%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLF--VVNEVCEMKNCNKCIYF 111
+V+I + T +L+ +P+S T RK+ L ++ + E + + +
Sbjct: 529 KVMITMTPKAKITTFKFCFELQKCIPNSEIFT---RKNVLLKTIIEQAKEREFTDLLVVH 585
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLKGSRPILSFDPAF 165
E +KK + ++ + PEGP+A F + ++ +LK+ CLK + F +
Sbjct: 586 EDRKKPNGIIF-CHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGEST 644
Query: 166 DREPQYAL----------LKELLTQIF-GTPRYHPRSQPFVDHIFTFSIADNRIWFRN-- 212
P+ L + +L +F P++ R + TF + I+FR+
Sbjct: 645 SHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGR------RVVTFHNQRDYIFFRHHR 698
Query: 213 YQIIEE--DAALVEIGPRFVLNLIKIFKGSF 241
Y+ +E AAL+E+GPRF L L + KG+F
Sbjct: 699 YEFKKEGSKAALLELGPRFTLRLKWLQKGTF 729
>dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus]
Length = 306
Score = 33.4 bits (75), Expect = 4.7
Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFL---------------VQNIHTLAELKMSGNCLKG 154
+F K L+M+ S++ + P+ + ++ +L ++K S C +G
Sbjct: 80 FFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIEKFVSLKDIKTS-KCPEG 138
Query: 155 SRPILSF-DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNY 213
++P+L F FD + LK LL F P ++++ F+ + +++FR+Y
Sbjct: 139 TKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAGLEYVLHFTALNGKVYFRSY 198
Query: 214 QIIEEDAA-------LVEIGP 227
+++ + + L E+GP
Sbjct: 199 KLLLKKSGCRTPRIELEEMGP 219
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
Length = 361
Score = 33.4 bits (75), Expect = 4.7
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 222 LVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQS 254
L+EIGPR L LIKI + + GG LY + ++S
Sbjct: 261 LIEIGPRMTLELIKITEDAMGGKVLYHSHVHKS 293
>dbj|BAA81892.1| (AB026979) ten-m3 [Danio rerio]
Length = 2590
Score = 32.2 bits (72), Expect = 9.6
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 240 SFGGPTLYENPHYQ--SPNMHRRMIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTE 297
S P++ E+ H Q SPN+H + + A RPV P+
Sbjct: 4 SLSSPSVTEHSHSQPPSPNLHDNQSSILSNATTQAVQDSDSEEEYTAVLYRPVTQPAPSH 63
Query: 298 AVFYTPAEEKPQVIETEPPAPKP 320
+ P+ + Q T PP P P
Sbjct: 64 SCNEQPSNQHQQGQSTLPPVPPP 86
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schiz... 401 e-111
gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melan... 400 e-110
gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana] 399 e-110
ref|NP_014565.1| Essential nucleolar protein required for biogen... 395 e-109
gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175... 393 e-108
sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHR... 378 e-104
ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens] >g... 195 5e-49
Sequences not found previously or not previously below threshold:
emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora cra... 59 8e-08
gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melan... 52 1e-05
sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN ... 48 2e-04
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CH... 45 0.001
ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae] >gi|1730744|sp... 44 0.003
emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapi... 41 0.023
emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis tha... 41 0.028
dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens] 40 0.053
gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma... 39 0.061
gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar... 39 0.064
pir||T39008 probable mating protein - fission yeast (Schizosacch... 39 0.089
pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment) 39 0.095
pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana ... 38 0.17
gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melano... 37 0.22
dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens] 37 0.39
gb|AAD02810.1| (AF062396) protein phosphatase 2A regulatory subu... 37 0.40
gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster] 36 0.67
gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanoga... 36 0.76
sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHR... 34 2.6
gb|AAG52369.1|AC011765_21 (AC011765) putative cytochrome P450; 6... 34 2.6
sp|P07788|COTA_BACSU SPORE COAT PROTEIN A >gi|7475834|pir||F6960... 34 4.1
dbj|BAA22774.1| (AB007638) spore coat proein A [Bacillus subtilis] 34 4.1
pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegan... 33 5.4
>emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schizosaccharomyces
pombe]
Length = 295
Score = 401 bits (1021), Expect = e-111
Identities = 124/287 (43%), Positives = 177/287 (61%), Gaps = 16/287 (5%)
Query: 28 SEQEATAGEEFIVPPPVSEGKWKN--------KERVLIFSSRGINFRTRHLMQDLRSLMP 79
SE+ +E PV G+ K++VL+ SSRG+ +R RHL+ DL S+MP
Sbjct: 10 SERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLVSMMP 69
Query: 80 HSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNI 139
HS+ ++K+D KD+L+ +NE+ E+ NCN +FE+++++DLY+ ++ +P GP+ KF V+N+
Sbjct: 70 HSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENL 129
Query: 140 HTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIF 199
HT+ EL M+GN LKGSRPILSFD FD P ++KELL Q FG P+ RS+PF+D +
Sbjct: 130 HTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFIDRVC 189
Query: 200 TFSIADNRIWFRNYQIIEED------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQ 253
T +IAD +IWFRNY+I E + L+EIGPRFV+ +I I +GSFGGP +Y+N +
Sbjct: 190 TLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFV 249
Query: 254 SPNMHRRMIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEAVF 300
S M R IR A + VIP DP + VF
Sbjct: 250 SSTMVRAAIR--NQAAQRYVNRQESKLERQVRAQQNVIPEDPLDNVF 294
>gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melanogaster]
Length = 359
Score = 400 bits (1017), Expect = e-110
Identities = 135/230 (58%), Positives = 179/230 (77%), Gaps = 2/230 (0%)
Query: 39 IVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNE 98
+VP + KW NK+RVL+FS+RGI+ R RHLM+D+++LMPH R E+KM+R L VVNE
Sbjct: 36 VVPKKARKEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNE 95
Query: 99 VCEMKNCNKCIYFEAKKKQDLYMWLSNS--PEGPSAKFLVQNIHTLAELKMSGNCLKGSR 156
+CEMK+CNK + FE ++K+DLYMW+SN+ GPSAKFL++NIHT+AELKM+GNCL+GSR
Sbjct: 96 MCEMKHCNKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSR 155
Query: 157 PILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII 216
P+LSFD FD P LLKEL Q + P +HP+SQPFVDH+FTF+ D RIWFRN+QI+
Sbjct: 156 PLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQIL 215
Query: 217 EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
ED L E+GPR+V+N +KIF GSF G T++ENP Y SP+ R++++ A
Sbjct: 216 SEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKAA 265
>gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana]
Length = 315
Score = 399 bits (1015), Expect = e-110
Identities = 122/281 (43%), Positives = 170/281 (60%), Gaps = 14/281 (4%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
M ++ ++ ++ E+ P ++NKE+VL+ S
Sbjct: 1 MGRKRKHSETVTAAPVKDSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTCS 60
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMDRK-DKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
R INFR RHLM ++ SL+PH + ++K++ K + +NE+ E+K + C++FE +K +DL
Sbjct: 61 RRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDL 120
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
YMW+ SP GPS KFLV +HT+ ELK++GN LKGSRP+L+F F+ + + LLKE+LT
Sbjct: 121 YMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLT 180
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EEDA---------ALVEIG 226
QIFG P H +S+P+ DH+F FSI D+ IWFRNYQI E D L+E+G
Sbjct: 181 QIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVG 240
Query: 227 PRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
PRF LN IKIF GSFGG TLYENP Y SPN R + + A
Sbjct: 241 PRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKA 281
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 395 bits (1005), Expect = e-109
Identities = 124/263 (47%), Positives = 164/263 (62%), Gaps = 14/263 (5%)
Query: 48 KWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNK 107
++ NK+R L+ SSRG+N+R RHL+QDL L+PHSR E K+D K L +NE+ E+ NCN
Sbjct: 26 QFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNN 85
Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDR 167
++FEA+K QDLY+WLS P GP+ KF +QN+HT+ EL +GNCLKGSRP+LSFD F+
Sbjct: 86 VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145
Query: 168 EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----------- 216
P Y L+KELL F P +S+PF+DH+ +FSI D++IW R Y+I
Sbjct: 146 SPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEISHSTKNKEEYED 205
Query: 217 -EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAXXXXXXX 275
EED +LVEIGPRFV+ +I I +GSFGGP +YEN Y SPN+ R I+ A
Sbjct: 206 GEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAA--EEAKSR 263
Query: 276 XXXXXXXXXXXDRPVIPVDPTEA 298
V+ DP
Sbjct: 264 AEAAVERKIKRRENVLAADPLSN 286
>gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175 [Arabidopsis thaliana]
Length = 320
Score = 393 bits (999), Expect = e-108
Identities = 124/262 (47%), Positives = 173/262 (65%), Gaps = 16/262 (6%)
Query: 20 KAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMP 79
+ K+ L G + ++ E ++ +KNKE+VL+ SR I+FR R LM ++ SL+P
Sbjct: 26 RPKRTLLGWKDKSEGEAEKA--KALTSSGFKNKEKVLVTCSRRISFRYRSLMLNIVSLLP 83
Query: 80 HSRAETKMDRK-DKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQN 138
H + ++K++ K K +NE+ E+KN N C++FE +K +DLYMW+ SP GPS KFLV+
Sbjct: 84 HCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRKHKDLYMWMVKSPNGPSVKFLVKA 143
Query: 139 IHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHI 198
+H + E+K++GN LKGSRP+L+F FD++ + LLKE+LTQ+FG P+ H +S+P+ DH+
Sbjct: 144 VHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQVFGIPKEHRKSKPYHDHV 203
Query: 199 FTFSIADNRIWFRNYQII----EEDA---------ALVEIGPRFVLNLIKIFKGSFGGPT 245
F FSI D IWFRNYQI E D L+E+GPRF LN IKIF GSFGGPT
Sbjct: 204 FVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTLIEVGPRFCLNPIKIFAGSFGGPT 263
Query: 246 LYENPHYQSPNMHRRMIRLATA 267
LYENP Y SPN R + + A
Sbjct: 264 LYENPLYVSPNQIRALEKRNKA 285
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
pir||S44853 K12H4.3 protein - Caenorhabditis elegans
gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank: CE5D1 (Z14791),
CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
putative [Caenorhabditis elegans]
Length = 352
Score = 378 bits (961), Expect = e-104
Identities = 125/264 (47%), Positives = 184/264 (69%), Gaps = 4/264 (1%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSR 61
SA+++ ++ + ++ + E W N+ERVL+ SR
Sbjct: 15 SAHQKMEWEAAGAKDSSSDDSSDESDNDDQPKQATEET---RKRAELWTNRERVLVLCSR 71
Query: 62 GINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYM 121
G + RTR+LM+D++ L+PH++ ++K+D++ L V+NE+ EMKNC K +YFE++K++D Y+
Sbjct: 72 GADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKVMYFESRKRKDTYL 131
Query: 122 WLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181
W+SN +GPS KFLV N+HT+ ELKMSGNCL+ SRP+LSFD AFD++PQ L+K +L Q
Sbjct: 132 WMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQT 191
Query: 182 FGTPRYHPRSQPFVDHIFTFSIAD-NRIWFRNYQIIEEDAALVEIGPRFVLNLIKIFKGS 240
GTP +HPRSQPFVDH+F FS+ + ++IWFRN+QI++E L E+GPRFVL ++++F GS
Sbjct: 192 LGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGPRFVLEMVRLFAGS 251
Query: 241 FGGPTLYENPHYQSPNMHRRMIRL 264
F G LY+NP+Y SPN+ RR R
Sbjct: 252 FEGAVLYDNPNYVSPNVIRREHRK 275
>ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens]
ref|XP_003882.1| hypothetical protein FLJ11100 [Homo sapiens]
dbj|BAA92003.1| (AK001962) unnamed protein product [Homo sapiens]
Length = 129
Score = 195 bits (493), Expect = 5e-49
Identities = 89/131 (67%), Positives = 99/131 (74%), Gaps = 11/131 (8%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSE----QEATAGEEFI-----VPPPVSEGKWKN 51
M+A KRKR A KK K+ +E + ATA E +P PV +GKWKN
Sbjct: 1 MAATKRKRRG--GFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKN 58
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
KER+LIFSSRGINFRTRHLMQDLR LMPHS+A+TKMDRKDKLFV+NEVCEMKNCNKCIYF
Sbjct: 59 KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYF 118
Query: 112 EAKKKQDLYMW 122
EAKKKQDLYMW
Sbjct: 119 EAKKKQDLYMW 129
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 58.8 bits (141), Expect = 8e-08
Identities = 49/198 (24%), Positives = 88/198 (43%), Gaps = 25/198 (12%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNE----VCEMKNCNKCI 109
R+L+ +SR + R +++R L+P S R ++ +V E + +N +
Sbjct: 85 RILVTTSRDPSSRLGQFSKEIRLLLPTSV------RLNRGNLVLEDLVGAAKAQNLTDVV 138
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKG----SRPILSFDPAF 165
+ M +S+ P GP+ + N+ A++ S +KG S P L F+ F
Sbjct: 139 LLHEHRGVPTAMTISHFPHGPTLMVSLHNVVLRADIPKS---IKGTVSESYPRLIFE-GF 194
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFV-DHIFTFSIADNRIWFRNY---QIIEEDAA 221
+ ++K +L +F P P +P V + + TF D+ I R++ + +
Sbjct: 195 STKLGERVVK-ILKHLF--PPREPTQKPNVGNRVITFVNNDDTIEVRHHVYVRTSYDSVE 251
Query: 222 LVEIGPRFVLNLIKIFKG 239
L E+GPRF + KI G
Sbjct: 252 LSEVGPRFTMKPFKITMG 269
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 51.8 bits (123), Expect = 1e-05
Identities = 44/213 (20%), Positives = 98/213 (45%), Gaps = 19/213 (8%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFE 112
++++ +S + R + M++LR ++P+++ +M+R + +L + C N +
Sbjct: 82 KIMLTTSHNPSSRLKMFMKELRLIIPNAQ---QMNRGNYQLTTLMHACRANNVTDFLIVH 138
Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
+ + + + P GP+A F + ++ ++ G + +P L F+ F
Sbjct: 139 EHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDIG-HMSEQKPHLIFN-NFKTPIGLR 196
Query: 173 LLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN--YQIIEEDAALVEIGPRFV 230
+K +L +F P+ + + + +F ++ I FR+ Y+ + ++ L E+GPRF
Sbjct: 197 TVK-ILKHLFPVPKENSQ------RVMSFLNHNDSIIFRHHQYKYVNKELELTEVGPRFS 249
Query: 231 LNLIKIFKGSFG----GPTLYENPHYQSPNMHR 259
L L +I G+ T + N Y + + R
Sbjct: 250 LKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
Length = 289
Score = 47.9 bits (113), Expect = 2e-04
Identities = 51/219 (23%), Positives = 92/219 (41%), Gaps = 23/219 (10%)
Query: 29 EQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMD 88
E AT E + + +VL+ +SR + R +++R L+P+S
Sbjct: 60 ESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSY------ 113
Query: 89 RKDKLF-VVNEVCEMKNCNK----CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLA 143
R ++ VV + E N I E + D + +S+ P GP+ F + N+
Sbjct: 114 RLNRGNIVVGSLVEAARANDITDIVILHEHRGIPD-GLVISHLPYGPTLSFSLHNVVLRH 172
Query: 144 ELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSI 203
++ +G + + P L F+ + +K L+ +F P + P + TF+
Sbjct: 173 DIPNTGT-MSEAYPHLIFENLTSKLG--KRVKTALSALF--PPDPKDTTP---RVVTFAN 224
Query: 204 ADNRIWFRNY---QIIEEDAALVEIGPRFVLNLIKIFKG 239
D+ I FR++ + + L E GPRF + L +I G
Sbjct: 225 TDDYISFRHHIYAKTGPKQIILSEAGPRFEMKLFEITLG 263
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 45.2 bits (106), Expect = 0.001
Identities = 44/193 (22%), Positives = 86/193 (43%), Gaps = 16/193 (8%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF-E 112
+++I +SR + R + ++++ + P+++ + + V + + ++ I F E
Sbjct: 79 KIVITTSRDPSSRLKMFAKEMKLIFPNAQRINR--GHYDVKQVVQASKAQDSTDLIIFTE 136
Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
+ D M + + P GP+A F + N+ ++ G + P L FD +
Sbjct: 137 TRGNPD-GMLVCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDNLNSKLGHR- 193
Query: 173 LLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRF 229
+L +F P+ P S+ I TFS +++ I FR++ E + L E GPRF
Sbjct: 194 -FTTILKHLFPVPK--PDSK----RIITFSNSEDYISFRHHVYKTENDGEVELTEAGPRF 246
Query: 230 VLNLIKIFKGSFG 242
L +I G+
Sbjct: 247 ELKPYQIKLGTLE 259
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
Length = 290
Score = 44.0 bits (103), Expect = 0.003
Identities = 45/218 (20%), Positives = 92/218 (41%), Gaps = 24/218 (11%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFE 112
R+++ +SR + R ++++ L P++ +++R + + + + C+ +
Sbjct: 87 RIIVTTSRDPSTRLSQFAKEIKLLFPNA---VRLNRGNYVMPNLVDACKKSGTTDLVVLH 143
Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
+ + +S+ P GP+A+F + N+ ++ +GN + + P L FD F
Sbjct: 144 EHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVN-PHLIFD-NFTTA---- 197
Query: 173 LLKELLTQIFGTPRYHPRSQPFVD--HIFTFSIADNRIWFRN--YQIIEEDAALVEIGPR 228
L ++ ++ + P D + TF+ + I R Y E + E+GPR
Sbjct: 198 ----LGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVRTREGVEIAEVGPR 253
Query: 229 FVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
F + L ++ G+ EN RR IR A
Sbjct: 254 FEMRLFELRLGTL------ENKDADVEWQLRRFIRTAN 285
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 40.9 bits (95), Expect = 0.023
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 136 VQNIHTLAELKMSGNCLKGSRPILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPF 194
++N +L ++K S C +G++P+L F F+ Y LK LLT F P
Sbjct: 110 IENFVSLKDIKNS-KCPEGTKPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAG 168
Query: 195 VDHIFTFSIADNRIWFRNYQI-------IEEDAALVEIGP 227
++++ F+ + +I+FR Y++ L EIGP
Sbjct: 169 LEYVLHFTALNGKIYFRRYKLLLKKSGCRTPRIELEEIGP 208
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
Length = 343
Score = 40.5 bits (94), Expect = 0.028
Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 28/204 (13%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMP--HSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+VL+ + R + R L+ +L S++P H + D K + E K+ I
Sbjct: 128 KVLLTTCRFNSTRGPALISELLSVIPNSHYQKRGTYDLKK----IVEYATKKDFTSLIVV 183
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQY 171
+++ + + P GP+A F + N+ ++K GN +P L + F
Sbjct: 184 HTNRREPDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNP-TSHQPELVLN-NFTTRLGN 241
Query: 172 ALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI------IEEDAA---- 221
+ + Q P + R + + TF + I+FR+++ + D
Sbjct: 242 RVGR--FFQSLFPPDPNFRGR----RVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEET 295
Query: 222 ----LVEIGPRFVLNLIKIFKGSF 241
L E GPRF L L+ + G+F
Sbjct: 296 IKPRLQECGPRFTLKLVTLQHGTF 319
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 39.7 bits (92), Expect = 0.053
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 136 VQNIHTLAELKMSGNCLKGSRPILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPF 194
++N +L ++K S C +G++P+L F FD Y LK LL F P
Sbjct: 121 IENFVSLKDIKNS-KCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179
Query: 195 VDHIFTFSIADNRIWFRNYQI-------IEEDAALVEIGP 227
++++ F+ + +I+FR+Y++ L E+GP
Sbjct: 180 LEYVLHFTALNGKIYFRSYKLLLKKSGCRTPRIELEEMGP 219
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
Length = 287
Score = 39.3 bits (91), Expect = 0.061
Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 30/209 (14%)
Query: 45 SEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETK--------MDRKDKLFVV 96
RVL+ +SR + + +++R ++P + + MD +
Sbjct: 75 YANAGVEDPRVLVTTSREPSQKLLEFAKEIRLVIPSAVRMNRGNLSVRQLMDAARRGQ-- 132
Query: 97 NEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSR 156
+ + E++ D + +S+ P GP+ F + N+ T +++ G +
Sbjct: 133 -------YSDVVVLQESQGVPDS-LTVSHLPLGPTVVFTIHNLVTRHDIQDVGT-MSEQH 183
Query: 157 PILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII 216
P L F+ F ++++L +F P +P + TF ++ + FR++
Sbjct: 184 PHLIFE-NFTTRLGRR-VRDVLKFLFPVP------KPRPTRVLTFDNQNDFVSFRHHTFR 235
Query: 217 E---EDAALVEIGPRFVLNLIKIFKGSFG 242
+ L E+GPR + +I G+
Sbjct: 236 AVKGREVQLTEVGPRMDVAPYRITLGTLE 264
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
1537-3735 [Arabidopsis thaliana]
gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
73469-75667 [Arabidopsis thaliana]
Length = 294
Score = 39.3 bits (91), Expect = 0.064
Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 36/229 (15%)
Query: 17 NTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKE----RVLIFSSRGINFRTRHLMQ 72
N + +Q E + TA VP + ++ N ++L+ +SR + +
Sbjct: 48 NVEAKLRQEIDLEDQNTA-----VPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTK 102
Query: 73 DLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNK----CIYFEAKKKQDLYMWLSNSPE 128
+L+ + P+S+ +++R V++E+ E + + E + D + +S+ P
Sbjct: 103 ELKFVFPNSQ---RINRGS--QVISEIIETARSHDFTDVILVHEHRGVPD-GLIISHLPF 156
Query: 129 GPSAKFLVQNI---HTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTP 185
GP+A F + N+ H +++ K G + P L F+ F + + +L IF P
Sbjct: 157 GPTAYFGLLNVVTRHDISDKKSIGK-MPEQYPHLIFN-NFTTQMG-QRVGNILKHIFPAP 213
Query: 186 RYHPRSQPFVDHIFTFSIADNRIWFRNY-----QIIEEDAALVEIGPRF 229
+ + I TFS + I FRN+ + + L EIGPRF
Sbjct: 214 KLDAK------RIVTFSNQSDYISFRNHVYDKGEGGPKSIELKEIGPRF 256
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
Length = 361
Score = 39.0 bits (90), Expect = 0.089
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
L+EIGPR L LIKI + + GG LY + ++S ++
Sbjct: 259 IKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQ 300
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 39.0 bits (90), Expect = 0.095
Identities = 53/242 (21%), Positives = 95/242 (38%), Gaps = 39/242 (16%)
Query: 19 KKAKKQLAGSEQEATAGEEFIVPPPVSEG--KWKNKE---RVLIFSSRGINFRTRHLMQD 73
K Q E +E + ++ + NK+ ++LI +S + RT L +
Sbjct: 10 KTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQ 69
Query: 74 LRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAK 133
L +++P+S + R L + C ++ I +K + LS+ P GP+A
Sbjct: 70 LSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 127
Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYH----- 188
F + ++ E+K G D + E++ F T H
Sbjct: 128 FKMSSVRLRKEIKRRGK---------------DPTEH---IPEIILNNFTTRLGHSIGRM 169
Query: 189 -----PRSQPFVDH-IFTFSIADNRIWFRNYQI---IEEDAALVEIGPRFVLNLIKIFKG 239
P + F+ + TF + I+FR ++ E+ + E+GPRF L L + KG
Sbjct: 170 FASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKG 229
Query: 240 SF 241
+F
Sbjct: 230 TF 231
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
F44G4.1 (GB:Z49910) and several yeast hypothetical
proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
region (SP:P38805) [Arabidopsis thaliana]
Length = 434
Score = 38.2 bits (88), Expect = 0.17
Identities = 51/259 (19%), Positives = 96/259 (36%), Gaps = 49/259 (18%)
Query: 20 KAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKE--------------RVLIFSSRGINF 65
K +++ E T + V P E + + + +VL+ + R +
Sbjct: 93 KPPQKMIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNST 152
Query: 66 RTRHLMQDLRSLMP--HSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLY--- 120
R L+ +L S++P H + D K + E K+ I +++ +
Sbjct: 153 RGPALISELLSVIPNSHYQKRGTYDLKK----IVEYATKKDFTSLIVVHTNRREPAFAIS 208
Query: 121 ----MWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 176
+ + P GP+A F + N+ ++K GN +P L + F + +
Sbjct: 209 YVDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNP-TSHQPELVLN-NFTTRLGNRVGR- 265
Query: 177 LLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI------IEEDAA--------L 222
Q P + R + + TF + I+FR+++ + D L
Sbjct: 266 -FFQSLFPPDPNFRGR----RVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKPRL 320
Query: 223 VEIGPRFVLNLIKIFKGSF 241
E GPRF L L+ + G+F
Sbjct: 321 QECGPRFTLKLVTLQHGTF 339
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
Length = 394
Score = 37.4 bits (86), Expect = 0.22
Identities = 41/196 (20%), Positives = 83/196 (41%), Gaps = 13/196 (6%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
+VLI + +TR +L + P++ K+ K + + + E + +
Sbjct: 186 KVLITFADNPVTKTRKFGLELSRIFPNAL--VKIRNKSSVKKICKSAEREEFTDVVIVNE 243
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+++ + + + P GP+A F + N+ +++K + RP + + F
Sbjct: 244 DRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILN-NFTTRLGLT- 301
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN--YQIIEEDA--ALVEIGPRF 229
+ +L +F + P + TF + I+FR+ Y+ +E L E+GPRF
Sbjct: 302 VGRMLGALF---HHDPEFRG--RRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRF 356
Query: 230 VLNLIKIFKGSFGGPT 245
L L + +G+F T
Sbjct: 357 TLKLRSLQEGTFDSKT 372
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 36.6 bits (84), Expect = 0.39
Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 42/259 (16%)
Query: 5 KRKRGSLPEVATNTKKAK---KQLAGSEQEATAGEEFIVPPPVSEG--KWKNKE---RVL 56
K++R +L + A K Q E +E + ++ + NK+ ++L
Sbjct: 86 KKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKIL 145
Query: 57 IFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKK 116
I +S + RT L + L +++P+S + R L + C ++ I +K
Sbjct: 146 ITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINEDRK 203
Query: 117 QDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 176
+ LS+ P GP+A F + ++ E+K G D + E
Sbjct: 204 TPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGK---------------DPTEH---IPE 245
Query: 177 LLTQIFGTPRYH----------PRSQPFVDH-IFTFSIADNRIWFRNYQI---IEEDAAL 222
++ F T H P + F+ + TF + I+FR ++ E+ +
Sbjct: 246 IILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGI 305
Query: 223 VEIGPRFVLNLIKIFKGSF 241
E+GPRF L L + KG+F
Sbjct: 306 QELGPRFTLKLRSLQKGTF 324
>gb|AAD02810.1| (AF062396) protein phosphatase 2A regulatory subunit isoform B'
delta [Arabidopsis thaliana]
dbj|BAB01066.1| (AB023041) protein phosphatase 2A regulatory subunit B'
[Arabidopsis thaliana]
Length = 477
Score = 36.6 bits (84), Expect = 0.40
Identities = 11/38 (28%), Positives = 20/38 (51%), Gaps = 1/38 (2%)
Query: 169 PQYALLKELLTQIFGTPRYHPR-SQPFVDHIFTFSIAD 205
P ++ E L +I +P P+ S+ ++DH F + D
Sbjct: 167 PHLQIVYEFLLRIVASPNTDPKISKKYIDHTFVLKLLD 204
>gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster]
Length = 460
Score = 35.8 bits (82), Expect = 0.67
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 212 NYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
N + + L EIGPR + LIKI +G G LY
Sbjct: 260 NLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLY 295
>gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanogaster]
Length = 460
Score = 35.8 bits (82), Expect = 0.76
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 212 NYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
N + + L EIGPR + LIKI +G G LY
Sbjct: 260 NLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLY 295
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
pir||T38834 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
Length = 306
Score = 33.9 bits (77), Expect = 2.6
Identities = 41/209 (19%), Positives = 78/209 (36%), Gaps = 26/209 (12%)
Query: 44 VSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFV-VNEVCEM 102
+ + ++L+ +S+ + + +L P++ RK + V+E+ E
Sbjct: 85 AYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEF-----RKRTGDIEVHEIAEA 139
Query: 103 ---KNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPIL 159
+ + +K+ + L + P GPS F + N+ T E+ G G P L
Sbjct: 140 AAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRS-TGHIPEL 198
Query: 160 SFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFR--NYQIIE 217
+ F + + + TP+ R + T + ++FR Y E
Sbjct: 199 IIN-NFSTRLGMTVARAFQSLFIQTPQIQGR------QVVTIHCQRDFLFFRRHRYAFRE 251
Query: 218 ED-------AALVEIGPRFVLNLIKIFKG 239
+ L E+GPRF + L + KG
Sbjct: 252 KSNMPDGIGTGLQELGPRFTMRLRMVQKG 280
>gb|AAG52369.1|AC011765_21 (AC011765) putative cytochrome P450; 69682-71175 [Arabidopsis
thaliana]
Length = 497
Score = 33.9 bits (77), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 122 WLSNSPEGPSAKFLVQNIHTLAEL 145
W SN P GP KFL+ N+H + L
Sbjct: 23 WRSNIPPGPKPKFLLGNLHQMKPL 46
>sp|P07788|COTA_BACSU SPORE COAT PROTEIN A
pir||F69604 spore coat protein (outer) cotA - Bacillus subtilis
emb|CAB12449.1| (Z99107) spore coat protein (outer) [Bacillus subtilis]
Length = 513
Score = 33.5 bits (76), Expect = 4.1
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 9/94 (9%)
Query: 136 VQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFV 195
+QNI T LK++G + RP+L + +P K T+I+ + P
Sbjct: 366 IQNIRT---LKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIH 422
Query: 196 DHIFTFSIADNRIWFRNYQII--EEDAALVEIGP 227
H+ +F + D R + I +E L GP
Sbjct: 423 LHLVSFRVLDR----RPFDIARYQESGELSYTGP 452
>dbj|BAA22774.1| (AB007638) spore coat proein A [Bacillus subtilis]
Length = 515
Score = 33.5 bits (76), Expect = 4.1
Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 9/94 (9%)
Query: 136 VQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFV 195
+QNI T LK++G + RP+L + +P K T+I+ + P
Sbjct: 368 IQNIRT---LKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIH 424
Query: 196 DHIFTFSIADNRIWFRNYQII--EEDAALVEIGP 227
H+ +F + D R + I +E L GP
Sbjct: 425 LHLVSFRVLDR----RPFDIARYQESGELSYTGP 454
>pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegans
gb|AAB97575.1| (AF043700) contains similarity to human RNA-binding protein FUS/TLS
(SW:Q28009) [Caenorhabditis elegans]
Length = 608
Score = 33.1 bits (75), Expect = 5.4
Identities = 15/39 (38%), Positives = 22/39 (55%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPN 256
+ L EIGPR L L+KI +G G LY + ++P+
Sbjct: 336 SNVRLHEIGPRLTLELVKIEEGIDEGEVLYHKHNAKTPD 374
Searching..................................................done
Results from round 3
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana] 407 e-113
gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175... 387 e-106
emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schiz... 379 e-104
sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHR... 377 e-103
ref|NP_014565.1| Essential nucleolar protein required for biogen... 362 3e-99
gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melan... 359 2e-98
gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melan... 272 5e-72
sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN ... 262 6e-69
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CH... 252 6e-66
emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora cra... 234 1e-60
ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens] >g... 165 5e-40
Sequences not found previously or not previously below threshold:
gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar... 190 2e-47
ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae] >gi|1730744|sp... 183 3e-45
gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma... 182 5e-45
emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis tha... 120 3e-26
pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment) 109 8e-23
gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melano... 107 2e-22
pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana ... 107 2e-22
dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens] 102 7e-21
emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipoly... 89 7e-17
sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CH... 89 9e-17
pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegan... 89 9e-17
sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHR... 87 4e-16
ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae] >gi|731684|sp|... 76 5e-13
emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans] 53 8e-06
emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapi... 51 2e-05
dbj|BAB10077.1| (AB010069) contains similarity to RNA binding pr... 51 3e-05
gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumoc... 49 6e-05
dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens] 47 3e-04
ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerev... 47 4e-04
ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyc... 46 7e-04
emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sap... 43 0.006
pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (str... 42 0.011
pir||T39008 probable mating protein - fission yeast (Schizosacch... 41 0.021
emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfat... 40 0.047
ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens] 39 0.067
ref|NP_064615.1| peter pan (Drosophila) homolog; second-step spl... 39 0.080
gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster] 37 0.28
gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanoga... 37 0.32
pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii ... 37 0.46
pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (st... 36 0.66
emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta] 36 0.69
pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegan... 34 3.2
gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melano... 33 3.6
ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae] >gi|549638|... 33 5.7
>gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana]
Length = 315
Score = 407 bits (1037), Expect = e-113
Identities = 122/281 (43%), Positives = 170/281 (60%), Gaps = 14/281 (4%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
M ++ ++ ++ E+ P ++NKE+VL+ S
Sbjct: 1 MGRKRKHSETVTAAPVKDSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTCS 60
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMDRK-DKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
R INFR RHLM ++ SL+PH + ++K++ K + +NE+ E+K + C++FE +K +DL
Sbjct: 61 RRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDL 120
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
YMW+ SP GPS KFLV +HT+ ELK++GN LKGSRP+L+F F+ + + LLKE+LT
Sbjct: 121 YMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLT 180
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EEDA---------ALVEIG 226
QIFG P H +S+P+ DH+F FSI D+ IWFRNYQI E D L+E+G
Sbjct: 181 QIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVG 240
Query: 227 PRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
PRF LN IKIF GSFGG TLYENP Y SPN R + + A
Sbjct: 241 PRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKA 281
>gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175 [Arabidopsis thaliana]
Length = 320
Score = 387 bits (984), Expect = e-106
Identities = 125/287 (43%), Positives = 176/287 (60%), Gaps = 22/287 (7%)
Query: 1 MSAYKRKRGSLPEVATNTKK------AKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKER 54
M ++ + K+ L G + ++ E ++ +KNKE+
Sbjct: 1 MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKA--KALTSSGFKNKEK 58
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRK-DKLFVVNEVCEMKNCNKCIYFEA 113
VL+ SR I+FR R LM ++ SL+PH + ++K++ K K +NE+ E+KN N C++FE
Sbjct: 59 VLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFEC 118
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+K +DLYMW+ SP GPS KFLV+ +H + E+K++GN LKGSRP+L+F FD++ + L
Sbjct: 119 RKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKL 178
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EEDA--------- 220
LKE+LTQ+FG P+ H +S+P+ DH+F FSI D IWFRNYQI E D
Sbjct: 179 LKEMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKM 238
Query: 221 ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A
Sbjct: 239 TLIEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKA 285
>emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schizosaccharomyces
pombe]
Length = 295
Score = 379 bits (965), Expect = e-104
Identities = 125/290 (43%), Positives = 178/290 (61%), Gaps = 16/290 (5%)
Query: 25 LAGSEQEATAGEEFIVPPPVSEGKWKN--------KERVLIFSSRGINFRTRHLMQDLRS 76
L SE+ +E PV G+ K++VL+ SSRG+ +R RHL+ DL S
Sbjct: 7 LKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLVS 66
Query: 77 LMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLV 136
+MPHS+ ++K+D KD+L+ +NE+ E+ NCN +FE+++++DLY+ ++ +P GP+ KF V
Sbjct: 67 MMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHV 126
Query: 137 QNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVD 196
+N+HT+ EL M+GN LKGSRPILSFD FD P ++KELL Q FG P+ RS+PF+D
Sbjct: 127 ENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFID 186
Query: 197 HIFTFSIADNRIWFRNYQIIEED------AALVEIGPRFVLNLIKIFKGSFGGPTLYENP 250
+ T +IAD +IWFRNY+I E + L+EIGPRFV+ +I I +GSFGGP +Y+N
Sbjct: 187 RVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGSFGGPVIYKND 246
Query: 251 HYQSPNMHRRMIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEAVF 300
+ S M R IR A + VIP DP + VF
Sbjct: 247 TFVSSTMVRAAIRNQAAQ--RYVNRQESKLERQVRAQQNVIPEDPLDNVF 294
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
pir||S44853 K12H4.3 protein - Caenorhabditis elegans
gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank: CE5D1 (Z14791),
CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
putative [Caenorhabditis elegans]
Length = 352
Score = 377 bits (958), Expect = e-103
Identities = 125/264 (47%), Positives = 184/264 (69%), Gaps = 4/264 (1%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSR 61
SA+++ ++ + ++ + E W N+ERVL+ SR
Sbjct: 15 SAHQKMEWEAAGAKDSSSDDSSDESDNDDQPKQATEET---RKRAELWTNRERVLVLCSR 71
Query: 62 GINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYM 121
G + RTR+LM+D++ L+PH++ ++K+D++ L V+NE+ EMKNC K +YFE++K++D Y+
Sbjct: 72 GADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKVMYFESRKRKDTYL 131
Query: 122 WLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181
W+SN +GPS KFLV N+HT+ ELKMSGNCL+ SRP+LSFD AFD++PQ L+K +L Q
Sbjct: 132 WMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQT 191
Query: 182 FGTPRYHPRSQPFVDHIFTFSIAD-NRIWFRNYQIIEEDAALVEIGPRFVLNLIKIFKGS 240
GTP +HPRSQPFVDH+F FS+ + ++IWFRN+QI++E L E+GPRFVL ++++F GS
Sbjct: 192 LGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGPRFVLEMVRLFAGS 251
Query: 241 FGGPTLYENPHYQSPNMHRRMIRL 264
F G LY+NP+Y SPN+ RR R
Sbjct: 252 FEGAVLYDNPNYVSPNVIRREHRK 275
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 362 bits (921), Expect = 3e-99
Identities = 124/278 (44%), Positives = 167/278 (59%), Gaps = 14/278 (5%)
Query: 33 TAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDK 92
+ + + ++ NK+R L+ SSRG+N+R RHL+QDL L+PHSR E K+D K
Sbjct: 11 KSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKD 70
Query: 93 LFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCL 152
L +NE+ E+ NCN ++FEA+K QDLY+WLS P GP+ KF +QN+HT+ EL +GNCL
Sbjct: 71 LQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCL 130
Query: 153 KGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN 212
KGSRP+LSFD F+ P Y L+KELL F P +S+PF+DH+ +FSI D++IW R
Sbjct: 131 KGSRPVLSFDQRFESSPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRT 190
Query: 213 YQII------------EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRR 260
Y+I EED +LVEIGPRFV+ +I I +GSFGGP +YEN Y SPN+ R
Sbjct: 191 YEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRA 250
Query: 261 MIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEA 298
I+ A V+ DP
Sbjct: 251 QIKQQAAE--EAKSRAEAAVERKIKRRENVLAADPLSN 286
>gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melanogaster]
Length = 359
Score = 359 bits (914), Expect = 2e-98
Identities = 135/237 (56%), Positives = 180/237 (74%), Gaps = 2/237 (0%)
Query: 32 ATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD 91
+ +VP + KW NK+RVL+FS+RGI+ R RHLM+D+++LMPH R E+KM+R
Sbjct: 29 PQRSSDDVVPKKARKEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSK 88
Query: 92 KLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNS--PEGPSAKFLVQNIHTLAELKMSG 149
L VVNE+CEMK+CNK + FE ++K+DLYMW+SN+ GPSAKFL++NIHT+AELKM+G
Sbjct: 89 TLSVVNEMCEMKHCNKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTG 148
Query: 150 NCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIW 209
NCL+GSRP+LSFD FD P LLKEL Q + P +HP+SQPFVDH+FTF+ D RIW
Sbjct: 149 NCLRGSRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIW 208
Query: 210 FRNYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
FRN+QI+ ED L E+GPR+V+N +KIF GSF G T++ENP Y SP+ R++++ A
Sbjct: 209 FRNFQILSEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKAA 265
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 272 bits (689), Expect = 5e-72
Identities = 47/239 (19%), Positives = 102/239 (42%), Gaps = 19/239 (7%)
Query: 28 SEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKM 87
S + A G + ++++ +S + R + M++LR ++P+++ +M
Sbjct: 56 SLKYADEGVDDRTVNDEYHYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQ---QM 112
Query: 88 DRKD-KLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELK 146
+R + +L + C N + + + + + P GP+A F + ++ ++
Sbjct: 113 NRGNYQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIP 172
Query: 147 MSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN 206
G + +P L F F +K +L +F P+ + + + +F ++
Sbjct: 173 DIG-HMSEQKPHLIF-NNFKTPIGLRTVK-ILKHLFPVPKENSQ------RVMSFLNHND 223
Query: 207 RIWFRNYQ--IIEEDAALVEIGPRFVLNLIKIFKGSFG----GPTLYENPHYQSPNMHR 259
I FR++Q + ++ L E+GPRF L L +I G+ T + N Y + + R
Sbjct: 224 SIIFRHHQYKYVNKELELTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
Length = 289
Score = 262 bits (663), Expect = 6e-69
Identities = 49/246 (19%), Positives = 97/246 (38%), Gaps = 24/246 (9%)
Query: 18 TKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSL 77
+ +K E AT E + + +VL+ +SR + R +++R L
Sbjct: 49 DSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLL 108
Query: 78 MPHSRAETKMDRKDKLFVV----NEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAK 133
+P+S R ++ +V E + + + + +S+ P GP+
Sbjct: 109 IPNSY------RLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLS 162
Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQP 193
F + N+ ++ +G + + P L F+ + +K L+ +F P + P
Sbjct: 163 FSLHNVVLRHDIPNTGT-MSEAYPHLIFENLTSKLG--KRVKTALSALF--PPDPKDTTP 217
Query: 194 FVDHIFTFSIADNRIWFRNY---QIIEEDAALVEIGPRFVLNLIKIFKGS---FGGPTLY 247
+ TF+ D+ I FR++ + + L E GPRF + L +I G+ +
Sbjct: 218 ---RVVTFANTDDYISFRHHIYAKTGPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEW 274
Query: 248 ENPHYQ 253
+ YQ
Sbjct: 275 KLKPYQ 280
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 252 bits (638), Expect = 6e-66
Identities = 44/225 (19%), Positives = 88/225 (38%), Gaps = 18/225 (8%)
Query: 42 PPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCE 101
+++I +SR + R + ++++ + P+++ + + V + +
Sbjct: 67 DSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINR--GHYDVKQVVQASK 124
Query: 102 MKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSF 161
++ I F + M + + P GP+A F + N+ ++ G + P L F
Sbjct: 125 AQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIF 183
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE--- 218
D + +L +F P+ P S+ I TFS +++ I FR++ E
Sbjct: 184 DNLNSKLGHR--FTTILKHLFPVPK--PDSK----RIITFSNSEDYISFRHHVYKTENDG 235
Query: 219 DAALVEIGPRFVLNLIKIFKGSFG----GPTLYENPHYQSPNMHR 259
+ L E GPRF L +I G+ + Y + R
Sbjct: 236 EVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKR 280
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 234 bits (592), Expect = 1e-60
Identities = 51/237 (21%), Positives = 95/237 (39%), Gaps = 25/237 (10%)
Query: 37 EFIVPPPVSEGK-WKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFV 95
+ I R+L+ +SR + R +++R L+P S R ++ +
Sbjct: 67 DAIDIDDEYSELSGVIDPRILVTTSRDPSSRLGQFSKEIRLLLPTSV------RLNRGNL 120
Query: 96 VNE----VCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS--G 149
V E + +N + + M +S+ P GP+ + N+ A++ S G
Sbjct: 121 VLEDLVGAAKAQNLTDVVLLHEHRGVPTAMTISHFPHGPTLMVSLHNVVLRADIPKSIKG 180
Query: 150 NCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFV-DHIFTFSIADNRI 208
+ S P L F+ F + ++K +L +F P P +P V + + TF D+ I
Sbjct: 181 T-VSESYPRLIFE-GFSTKLGERVVK-ILKHLF--PPREPTQKPNVGNRVITFVNNDDTI 235
Query: 209 WFRNY---QIIEEDAALVEIGPRFVLNLIKIFKGSF---GGPTLYENPHYQSPNMHR 259
R++ + + L E+GPRF + KI G+ T + Y + +
Sbjct: 236 EVRHHVYVRTSYDSVELSEVGPRFTMKPFKITMGTLDNKDADTEWHLSQYTRTSRKK 292
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
1537-3735 [Arabidopsis thaliana]
gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
73469-75667 [Arabidopsis thaliana]
Length = 294
Score = 190 bits (480), Expect = 2e-47
Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 21/250 (8%)
Query: 23 KQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSR 82
+Q E + TA + ++L+ +SR + ++L+ + P+S+
Sbjct: 54 RQEIDLEDQNTA-VPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQ 112
Query: 83 AETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTL 142
+ + + E + I + + +S+ P GP+A F + N+ T
Sbjct: 113 RINR--GSQVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTR 170
Query: 143 AEL--KMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFT 200
++ K S + P L F F + + +L IF P+ + I T
Sbjct: 171 HDISDKKSIGKMPEQYPHLIF-NNFTTQMG-QRVGNILKHIFPAPKLDAK------RIVT 222
Query: 201 FSIADNRIWFRNYQI-----IEEDAALVEIGPRFVLNLIKIFKGSF---GGPTLYENPHY 252
FS + I FRN+ + L EIGPRF L L ++ G+ + Y
Sbjct: 223 FSNQSDYISFRNHVYDKGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPY 282
Query: 253 QSPNMHRRMI 262
+ + R+ I
Sbjct: 283 MNTSKKRKFI 292
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
Length = 290
Score = 183 bits (461), Expect = 3e-45
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 33/242 (13%)
Query: 35 GEEFIVPPPVSEGK-WKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKL 93
+ + R+++ +SR + R ++++ L P++ R ++
Sbjct: 67 EADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAV------RLNRG 120
Query: 94 FVVN----EVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSG 149
V + C+ + + + +S+ P GP+A+F + N+ ++ +G
Sbjct: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
Query: 150 NCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIW 209
N P L FD F ++ +L +F + + + TF+ + I
Sbjct: 181 NQ-SEVNPHLIFD-NFTTALGKRVV-CILKHLFNAGP-----KKDSERVITFANRGDFIS 232
Query: 210 FRNYQII--EEDAALVEIGPRFVLNLIKIFKGSFG---GPTLYENPHYQSPNMHRRMIRL 264
R + + E + E+GPRF + L ++ G+ + RR IR
Sbjct: 233 VRQHVYVRTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEW---------QLRRFIRT 283
Query: 265 AT 266
A
Sbjct: 284 AN 285
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
Length = 287
Score = 182 bits (459), Expect = 5e-45
Identities = 40/231 (17%), Positives = 93/231 (39%), Gaps = 19/231 (8%)
Query: 39 IVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVN 97
RVL+ +SR + + +++R ++P + +M+R + + +
Sbjct: 69 TSVDDEYANAGVEDPRVLVTTSREPSQKLLEFAKEIRLVIPSAV---RMNRGNLSVRQLM 125
Query: 98 EVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRP 157
+ + + + + + +S+ P GP+ F + N+ T +++ G + P
Sbjct: 126 DAARRGQYSDVVVLQESQGVPDSLTVSHLPLGPTVVFTIHNLVTRHDIQDVGT-MSEQHP 184
Query: 158 ILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQ--- 214
L F+ R ++++L +F P +P + TF ++ + FR++
Sbjct: 185 HLIFENFTTRLG--RRVRDVLKFLFPVP------KPRPTRVLTFDNQNDFVSFRHHTFRA 236
Query: 215 IIEEDAALVEIGPRFVLNLIKIFKGSFG---GPTLYENPHYQSPNMHRRMI 262
+ + L E+GPR + +I G+ T + Y + RR++
Sbjct: 237 VKGREVQLTEVGPRMDVAPYRITLGTLEMDDAETEWVLQPYMNTAKKRRLL 287
>ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens]
ref|XP_003882.1| hypothetical protein FLJ11100 [Homo sapiens]
dbj|BAA92003.1| (AK001962) unnamed protein product [Homo sapiens]
Length = 129
Score = 165 bits (416), Expect = 5e-40
Identities = 86/131 (65%), Positives = 95/131 (71%), Gaps = 11/131 (8%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEE---------FIVPPPVSEGKWKN 51
M+A KRKR A KK K+ +E A +P PV +GKWKN
Sbjct: 1 MAATKRKRRG--GFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKN 58
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
KER+LIFSSRGINFRTRHLMQDLR LMPHS+A+TKMDRKDKLFV+NEVCEMKNCNKCIYF
Sbjct: 59 KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYF 118
Query: 112 EAKKKQDLYMW 122
EAKKKQDLYMW
Sbjct: 119 EAKKKQDLYMW 129
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
Length = 343
Score = 120 bits (299), Expect = 3e-26
Identities = 53/282 (18%), Positives = 96/282 (33%), Gaps = 35/282 (12%)
Query: 3 AYKRKRGSLPEVATNTKKAKKQLAGSEQ-----EATAGEEFIVPP-PVSEGKWKNK--ER 54
A +++ L E K E E F + + +
Sbjct: 69 AAEKRALELGEEPPQKMIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPK 128
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAK 114
VL+ + R + R L+ +L S++P+S + + L + E K+ I
Sbjct: 129 VLLTTCRFNSTRGPALISELLSVIPNSHYQKR--GTYDLKKIVEYATKKDFTSLIVVHTN 186
Query: 115 KKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALL 174
+++ + + P GP+A F + N+ ++K GN P L + R +
Sbjct: 187 RREPDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNPTSHQ-PELVLNNFTTRLGNR--V 243
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAA------------- 221
+F + TF + I+FR+++ I E
Sbjct: 244 GRFFQSLFPPDPNFR-----GRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKP 298
Query: 222 -LVEIGPRFVLNLIKIFKGSF---GGPTLYENPHYQSPNMHR 259
L E GPRF L L+ + G+F GG + + + R
Sbjct: 299 RLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRR 340
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 109 bits (270), Expect = 8e-23
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFE 112
++LI +S + RT L + L +++P+S + R L + C ++ I
Sbjct: 49 PKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVIN 106
Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
+K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 107 EDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGH-- 164
Query: 173 LLKELLTQIFGTPRYHPRSQPFVDH-IFTFSIADNRIWFRNYQI---IEEDAALVEIGPR 228
+ + +F ++P+ F+ + TF + I+FR ++ E+ + E+GPR
Sbjct: 165 SIGRMFASLF---PHNPQ---FIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 218
Query: 229 FVLNLIKIFKGSFG---GPTLYENPH 251
F L L + KG+F G + +
Sbjct: 219 FTLKLRSLQKGTFDSKYGEYEWVHKP 244
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
Length = 394
Score = 107 bits (267), Expect = 2e-22
Identities = 43/254 (16%), Positives = 99/254 (38%), Gaps = 20/254 (7%)
Query: 3 AYKRKRGSLPEVATNT----KKAKKQLAGSEQEATAGE-EFIVPPPVSEGKWKN--KERV 55
R++ +P +T ++ + + ++ E + + ++ + +V
Sbjct: 128 RRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKV 187
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI + +TR +L + P++ K+ K + + + E + + +
Sbjct: 188 LITFADNPVTKTRKFGLELSRIFPNA--LVKIRNKSSVKKICKSAEREEFTDVVIVNEDR 245
Query: 116 KQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLK 175
++ + + + P GP+A F + N+ +++K + RP + F +
Sbjct: 246 RKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVIL-NNFTTRLGL-TVG 303
Query: 176 ELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE----EDAALVEIGPRFVL 231
+L +F H + TF + I+FR+++ + L E+GPRF L
Sbjct: 304 RMLGALF-----HHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTL 358
Query: 232 NLIKIFKGSFGGPT 245
L + +G+F T
Sbjct: 359 KLRSLQEGTFDSKT 372
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
F44G4.1 (GB:Z49910) and several yeast hypothetical
proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
region (SP:P38805) [Arabidopsis thaliana]
Length = 434
Score = 107 bits (266), Expect = 2e-22
Identities = 49/253 (19%), Positives = 88/253 (34%), Gaps = 48/253 (18%)
Query: 33 TAGEEFIVPPPVSEGKW--------------KNKERVLIFSSRGINFRTRHLMQDLRSLM 78
T + V P E + + +VL+ + R + R L+ +L S++
Sbjct: 106 TRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVI 165
Query: 79 PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQD-------LYMWLSNSPEGPS 131
P+S + + L + E K+ I +++ + + P GP+
Sbjct: 166 PNSHYQKR--GTYDLKKIVEYATKKDFTSLIVVHTNRREPAFAISYVDALLIIGLPNGPT 223
Query: 132 AKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRS 191
A F + N+ ++K GN P L + R + +F
Sbjct: 224 AHFKLSNLVLRKDIKNHGNPTSHQ-PELVLNNFTTRLGNR--VGRFFQSLFPPDPNFR-- 278
Query: 192 QPFVDHIFTFSIADNRIWFRNYQIIEEDAA--------------LVEIGPRFVLNLIKIF 237
+ TF + I+FR+++ I E L E GPRF L L+ +
Sbjct: 279 ---GRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQ 335
Query: 238 KGSF---GGPTLY 247
G+F GG +
Sbjct: 336 HGTFDTKGGEFEW 348
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 102 bits (253), Expect = 7e-21
Identities = 51/269 (18%), Positives = 104/269 (37%), Gaps = 28/269 (10%)
Query: 1 MSAYKRKRGSLPEVATNT-KKAKKQLAGS-----EQEATAGEEFIVPP---PVSEGKWKN 51
++A K+ + + K + + E +E + +
Sbjct: 79 LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNK 138
Query: 52 K--ERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCI 109
+ ++LI +S + RT L + L +++P+S + R L + C ++ I
Sbjct: 139 QTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLI 196
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREP 169
+K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 197 VINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLG 256
Query: 170 QYALLKELLTQIFGTPRYHPRSQPFVDH-IFTFSIADNRIWFRNYQI---IEEDAALVEI 225
+ + +F ++P+ F+ + TF + I+FR ++ E+ + E+
Sbjct: 257 H--SIGRMFASLF---PHNPQ---FIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQEL 308
Query: 226 GPRFVLNLIKIFKGSFG---GPTLYENPH 251
GPRF L L + KG+F G + +
Sbjct: 309 GPRFTLKLRSLQKGTFDSKYGEYEWVHKP 337
>emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipolytica]
Length = 333
Score = 89.2 bits (219), Expect = 7e-17
Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 22/233 (9%)
Query: 34 AGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKL 93
E + K +VLI +S+ + L ++P S + ++ +
Sbjct: 113 QEMEGEDEFKEYFEEGK-PPKVLITTSKRARGQAYDFADLLYDIIPGSEFKKRV-GDFTM 170
Query: 94 FVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSG---N 150
+ ++C ++ + KK+ + + PEGP+ F V ++ E+K G
Sbjct: 171 TQIAKMCAERDYTDLVVINEDKKKVNGLTFIHLPEGPTMYFSVSSLKMPKEIKGHGRSTT 230
Query: 151 CLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDH-IFTFSIADNRIW 209
+ P L F + L +F P+ FV + T + I+
Sbjct: 231 HI----PELIL-NNFSTRLG-KTVGRLFQSMF------PQQPEFVGRQVVTLHNQRDWIF 278
Query: 210 FRNYQII---EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHR 259
FR ++ + EE L E+GP+F L L ++ +G G +E+ + +
Sbjct: 279 FRRHRYVFKNEERVGLQELGPQFTLRLRRLQRG-IRGEVEWEHRSAMDKDKKK 330
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
Length = 754
Score = 88.8 bits (218), Expect = 9e-17
Identities = 53/267 (19%), Positives = 100/267 (36%), Gaps = 39/267 (14%)
Query: 8 RGSLPEVATNTKKAKKQLAGSEQEAT------AGEEFIVPPPVSEGKWKNK--ERVLIFS 59
R L E A + K + E +AT E + + +V+I
Sbjct: 475 RDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITM 534
Query: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
+ T +L+ +P+S T+ + L + E + + + +K+
Sbjct: 535 TPKAKITTFKFCFELQKCIPNSEIFTRKNVL--LKTIIEQAKEREFTDLLVVHEDRKKPN 592
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLKGSR------------PILSF 161
+ + PEGP+A F + ++ +LK+ CLK + P +
Sbjct: 593 GIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGESTSHFPEVIL 652
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE--- 218
+ R + +L +F + P+ + TF + I+FR+++ +
Sbjct: 653 NNFNTRLGH--NIARMLACLF---PHDPKFT--GRRVVTFHNQRDYIFFRHHRYEFKKEG 705
Query: 219 -DAALVEIGPRFVLNLIKIFKGSFGGP 244
AAL+E+GPRF L L + KG+F
Sbjct: 706 SKAALLELGPRFTLRLKWLQKGTFDAK 732
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
Length = 746
Score = 88.8 bits (218), Expect = 9e-17
Identities = 53/267 (19%), Positives = 100/267 (36%), Gaps = 39/267 (14%)
Query: 8 RGSLPEVATNTKKAKKQLAGSEQEAT------AGEEFIVPPPVSEGKWKNK--ERVLIFS 59
R L E A + K + E +AT E + + +V+I
Sbjct: 467 RDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITM 526
Query: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
+ T +L+ +P+S T+ + L + E + + + +K+
Sbjct: 527 TPKAKITTFKFCFELQKCIPNSEIFTRKNVL--LKTIIEQAKEREFTDLLVVHEDRKKPN 584
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLKGSR------------PILSF 161
+ + PEGP+A F + ++ +LK+ CLK + P +
Sbjct: 585 GIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGESTSHFPEVIL 644
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE--- 218
+ R + +L +F + P+ + TF + I+FR+++ +
Sbjct: 645 NNFNTRLGH--NIARMLACLF---PHDPKFT--GRRVVTFHNQRDYIFFRHHRYEFKKEG 697
Query: 219 -DAALVEIGPRFVLNLIKIFKGSFGGP 244
AAL+E+GPRF L L + KG+F
Sbjct: 698 SKAALLELGPRFTLRLKWLQKGTFDAK 724
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
pir||T38834 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
Length = 306
Score = 86.8 bits (213), Expect = 4e-16
Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 29/252 (11%)
Query: 4 YKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNK---ERVLIFSS 60
KR R S AT K E + + + + + ++L+ +S
Sbjct: 42 KKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTS 101
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFV-VNEVCEMK---NCNKCIYFEAKKK 116
+ + + +L P++ RK + V+E+ E + +K
Sbjct: 102 KRASRKCYDFASELLDCFPNAEF-----RKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRK 156
Query: 117 QDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 176
+ + L + P GPS F + N+ T E+ G G P L F +
Sbjct: 157 KTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRS-TGHIPELII-NNFSTRLGM-TVAR 213
Query: 177 LLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAA---------LVEIGP 227
+F Q + T + ++FR ++ + + L E+GP
Sbjct: 214 AFQSLFIQTP-----QIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQELGP 268
Query: 228 RFVLNLIKIFKG 239
RF + L + KG
Sbjct: 269 RFTMRLRMVQKG 280
>ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae]
sp|P38805|YHO8_YEAST HYPOTHETICAL 35.1 KDA PROTEIN IN NAM8-GAR1 INTERGENIC REGION
pir||S46718 hypothetical protein YHR088w - yeast (Saccharomyces cerevisiae)
gb|AAB68926.1| (U00060) Yhr088wp [Saccharomyces cerevisiae]
Length = 295
Score = 76.3 bits (186), Expect = 5e-13
Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 21/232 (9%)
Query: 35 GEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLF 94
+ ++ + ++ L ++P+ K KL
Sbjct: 75 EGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPN-VTFVKRKFGYKLK 133
Query: 95 VVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKG 154
++++C +N + KK+ + + PEGP+ F + + E+K +
Sbjct: 134 EISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV---EVKKIVGHGRP 190
Query: 155 SR--PILSFDPAFDREPQY--ALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWF 210
+ P L + R Q L + +L Q P R + T + I+F
Sbjct: 191 TSHIPELILNNFQTRLGQTVGRLFQSILPQN---PDIEGRQ------VITLHNQRDYIFF 241
Query: 211 RNYQIIEED---AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHR 259
R ++ + +D L E+GP+F L L ++ +G T +E+ +
Sbjct: 242 RRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKE-ETEWEHKPEMDKEKKK 292
>emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans]
Length = 97
Score = 52.5 bits (125), Expect = 8e-06
Identities = 23/101 (22%), Positives = 40/101 (38%), Gaps = 10/101 (9%)
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII---EE 218
+ F+ + L IF Q + T + I+FR ++ I EE
Sbjct: 1 NNNFNSRLG-KTVGRLFQSIFPHKPELQGRQ-----VITLHNQRDYIFFRRHRYIFRNEE 54
Query: 219 DAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHR 259
L E+GP+F L L ++ KG G ++E+ + +
Sbjct: 55 KVGLQELGPQFTLKLRRMQKG-VRGDVVWEHRPDMERDKKK 94
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 51.0 bits (121), Expect = 2e-05
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 99 VCEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKMSGNCLKGS 155
+ + +C+ ++ KK+ + + + + + ++N +L ++K S C +G+
Sbjct: 70 LSKKSDCSLFMFGSYNKKRPNNLVIGHMYDYHVLDMIELGIENFVSLKDIKNS-KCPEGT 128
Query: 156 RPILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQ 214
+P+L F F+ Y LK LLT F P ++++ F+ + +I+FR Y+
Sbjct: 129 KPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAGLEYVLHFTALNGKIYFRRYK 188
Query: 215 IIEED-------AALVEIGPRFVLNLI 234
++ + L EIGP LNL+
Sbjct: 189 LLLKKSGCRTPRIELEEIGP--SLNLV 213
>dbj|BAB10077.1| (AB010069) contains similarity to RNA binding
protein~gene_id:MAC9.8 [Arabidopsis thaliana]
Length = 346
Score = 50.6 bits (120), Expect = 3e-05
Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 10/202 (4%)
Query: 40 VPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLR-SLMPHSRAETKMDRKDKLFVVNE 98
VS + +FS + + L DLR ++P++ K +++ L
Sbjct: 21 NQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLN 80
Query: 99 VCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCL 152
V + +K L + ++ +P+GP+ F + +++ L
Sbjct: 81 VSGPMGVTHFLML-SKTASSLSLRVARTPQGPTLTFKIHQYSLASDIAQSQLRPRCPQDL 139
Query: 153 KGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWF 210
S P++ +E L + IF + + + + I F
Sbjct: 140 FKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLSTCQRLVLLNYNKDTKLIDF 199
Query: 211 RNYQIIEEDAALVEIGPRFVLN 232
R+Y I + + +FV N
Sbjct: 200 RHYSIRLQPVGVSRRIRKFVQN 221
>gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumocystis carinii f. sp.
carinii]
Length = 277
Score = 49.4 bits (117), Expect = 6e-05
Identities = 26/125 (20%), Positives = 49/125 (38%), Gaps = 13/125 (10%)
Query: 119 LYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELL 178
+ + + P GPS F + +I + + G P L F ++ +
Sbjct: 135 DSLIIIHLPSGPSFYFTISSITPTSCIYRHGRATS-HIPELII-NNFTTYLGL-TVENMF 191
Query: 179 TQIFGTPRYHPRSQPFVDH-IFTFSIADNRIWFRNYQIIEED---AALVEIGPRFVLNLI 234
+F P F + T + I+ R ++ I ++ +L E+GPRF L L
Sbjct: 192 RSLF------PTQADFEGRQVVTIHNQRDFIFIRRHRYIFKNDIKVSLQELGPRFTLKLR 245
Query: 235 KIFKG 239
++ +G
Sbjct: 246 RLQRG 250
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 47.5 bits (112), Expect = 3e-04
Identities = 30/139 (21%), Positives = 63/139 (44%), Gaps = 12/139 (8%)
Query: 100 CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKMSGNCLKGSR 156
+ +C+ ++ KK+ + + + + ++N +L ++K S C +G++
Sbjct: 82 SKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNS-KCPEGTK 140
Query: 157 PILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P+L F FD Y LK LL F P ++++ F+ + +I+FR+Y++
Sbjct: 141 PMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKL 200
Query: 216 IEED-------AALVEIGP 227
+ + L E+GP
Sbjct: 201 LLKKSGCRTPRIELEEMGP 219
>ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerevisiae]
sp|P38789|SSF1_YEAST SSF1 PROTEIN
pir||S46700 SSF1 protein - yeast (Saccharomyces cerevisiae)
gb|AAB68379.1| (U00061) Ssf1p [Saccharomyces cerevisiae]
gb|AAA79980.1| (U18113) Ssf1p [Saccharomyces cerevisiae]
Length = 453
Score = 46.7 bits (110), Expect = 4e-04
Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 24/182 (13%)
Query: 64 NFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF-EAKKKQDLYM 121
N L++D R +M PH+ + K + +KL +C F +++K ++ +
Sbjct: 37 NHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSL 96
Query: 122 WLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAFDREPQ----- 170
++ +P+GP+ F V + ++ S N P L F +
Sbjct: 97 KIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDD 156
Query: 171 -----YALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR----IWFRNYQIIEEDAA 221
++ + IF S + + F I +R I R+Y I +
Sbjct: 157 QDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRV--FMINKDRETGEISMRHYFIDIREVE 214
Query: 222 LV 223
+
Sbjct: 215 IS 216
Score = 37.7 bits (87), Expect = 0.19
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
+ L E+GPR L L+KI +G G L+ +S + + + A
Sbjct: 324 KAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAA 373
>ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyces cerevisiae]
sp|Q12153|SSF2_YEAST SSF2 PROTEIN
pir||S50248 SSF2 protein - yeast (Saccharomyces cerevisiae)
gb|AAA79981.1| (U18114) Ssf2p [Saccharomyces cerevisiae]
gb|AAB64748.1| (U28374) Ssf2p [Saccharomyces cerevisiae]
Length = 453
Score = 45.9 bits (108), Expect = 7e-04
Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 24/182 (13%)
Query: 64 NFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF-EAKKKQDLYM 121
N L++D R +M PH+ + K + +KL +C F +++K ++ +
Sbjct: 37 NHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSL 96
Query: 122 WLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAFDREPQ----- 170
++ +P+GP+ F V + ++ S N P L F +
Sbjct: 97 KIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSDEDD 156
Query: 171 -----YALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR----IWFRNYQIIEEDAA 221
++ + IF S + I F I +R I R+Y I +
Sbjct: 157 QDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRI--FMINKDRETGEISMRHYFIDIREVE 214
Query: 222 LV 223
+
Sbjct: 215 IS 216
Score = 37.3 bits (86), Expect = 0.26
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
+ L E+GPR L L+KI G G L+ +S + + + A
Sbjct: 324 KAIKLTELGPRLTLKLVKIEDGICSGKVLHHEFVQKSSEEIKALEKRHAA 373
>emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sapiens]
Length = 794
Score = 42.8 bits (100), Expect = 0.006
Identities = 33/180 (18%), Positives = 65/180 (35%), Gaps = 24/180 (13%)
Query: 53 ERVLIFSSRGINFR-TRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIY 110
+F+ RG R R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFT-RGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLI 87
Query: 111 FEAKKKQDLYMWLSNSPEGPSAKF------LVQNI------HTLAELKMSGNCLKGSRPI 158
+K + ++Y L P GP+ F LV+++ H + E + P+
Sbjct: 88 L-SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQF------AHPPL 140
Query: 159 LSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQII 216
L + L+ + +F + H + + + + FR+Y I
Sbjct: 141 LVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIK 200
Score = 33.5 bits (76), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 212 NYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
N + + L EIGPR L LIK+ +G G ++
Sbjct: 262 NMRAQQSAVRLTEIGPRMTLQLIKVQEGVGEGKVMF 297
>pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (strain K1)
dbj|BAA80440.1| (AP000061) 197aa long hypothetical protein [Aeropyrum pernix]
Length = 197
Score = 42.0 bits (98), Expect = 0.011
Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
R+L+ +SR + R R ++DL + +P + T+ + + ++ ++ +
Sbjct: 15 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSMEELAREAIIRGADRIVVVGE 72
Query: 114 KKKQD 118
++
Sbjct: 73 RRGNP 77
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
Length = 361
Score = 40.9 bits (95), Expect = 0.021
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 13/169 (7%)
Query: 67 TRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSN 125
L +DLR +M PH+ K + +K+ + + ++ + + +
Sbjct: 14 LSLLTRDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVL-SRTDNNANLRIIR 72
Query: 126 SPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILS---FDPAFDRE-PQYALLK 175
+P GPS F + ++ S + P+L F+ ++ P ALL
Sbjct: 73 APRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLT 132
Query: 176 ELLTQIFGTPRYHPRSQPFVDHIFTFSIADN-RIWFRNYQIIEEDAALV 223
+F + V + + D+ I R++ I + +
Sbjct: 133 TTFQNMFPPISVQHTNINSVKRVLLLNRRDDGYIDLRHFIISTKPVGIS 181
Score = 38.1 bits (88), Expect = 0.15
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
L+EIGPR L LIKI + + GG LY + ++S ++
Sbjct: 259 IKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQ 300
>emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
emb|CAC23146.1| (AL512964) hypothetical [Sulfolobus solfataricus]
Length = 170
Score = 39.7 bits (92), Expect = 0.047
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETK 86
+ R++I SSR + RTR+ + L ++P S T+
Sbjct: 5 RTRIVITSSRDPSIRTRNFLNVLTFVLPDSVKITR 39
>ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens]
Length = 473
Score = 39.3 bits (91), Expect = 0.067
Identities = 33/180 (18%), Positives = 65/180 (35%), Gaps = 24/180 (13%)
Query: 53 ERVLIFSSRGINFR-TRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIY 110
+F+ RG R R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFT-RGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLI 87
Query: 111 FEAKKKQDLYMWLSNSPEGPSAKF------LVQNI------HTLAELKMSGNCLKGSRPI 158
+K + ++Y L P GP+ F LV+++ H + E + P+
Sbjct: 88 L-SKTETNVYFKLMRLPGGPTLTFQVLQYSLVRDVVSSLRRHRMHEQQF------AHPPL 140
Query: 159 LSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQII 216
L + L+ + +F + H + + + + FR+Y I
Sbjct: 141 LVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIK 200
Score = 32.3 bits (73), Expect = 9.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 212 NYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
N + + L EIGPR L LIK+ +G G ++
Sbjct: 262 NMRAQQSAVRLTEIGPRMTLQLIKVQEGVGEGKVMF 297
>ref|NP_064615.1| peter pan (Drosophila) homolog; second-step splicing factor 1 [Homo
sapiens]
emb|CAB99252.1| (AJ292529) suppressor of sterile four 1 [Homo sapiens]
Length = 473
Score = 38.9 bits (90), Expect = 0.080
Identities = 33/180 (18%), Positives = 65/180 (35%), Gaps = 24/180 (13%)
Query: 53 ERVLIFSSRGINFR-TRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIY 110
+F+ RG R R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFT-RGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLI 87
Query: 111 FEAKKKQDLYMWLSNSPEGPSAKF------LVQNI------HTLAELKMSGNCLKGSRPI 158
+K + ++Y L P GP+ F LV+++ H + E + P+
Sbjct: 88 L-SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQF------AHPPL 140
Query: 159 LSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQII 216
L + L+ + +F + H + + + + FR+Y I
Sbjct: 141 LVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIK 200
>gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster]
Length = 460
Score = 37.3 bits (86), Expect = 0.28
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 212 NYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
N + + L EIGPR + LIKI +G G LY
Sbjct: 260 NLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLY 295
Score = 33.8 bits (77), Expect = 3.1
Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 18/177 (10%)
Query: 70 LMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPE 128
L D R +M P + + + R +++ + + + F Q L + P
Sbjct: 45 LTLDFRRIMEPFTASNLREKRMNRIQDFVCLSSFFHVSHMGIFNKASTQ-LSFKVVRLPR 103
Query: 129 GPSAKFLVQ------NIHTLAELKMSGNCLKGSRPILSFDPAFDREP-QYALLKELLTQI 181
GPS F V ++ +L++ +M N P++ F + L+ +
Sbjct: 104 GPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIM-NNFSGDGKHLKLMATTFQNM 162
Query: 182 FGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALVEIG-PRFVLNLIK 235
F + + + FS + + R+Y +V +G R V ++K
Sbjct: 163 FPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHY-----SVQVVPVGLKRAVQKIVK 214
>gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanogaster]
Length = 460
Score = 37.0 bits (85), Expect = 0.32
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 212 NYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
N + + L EIGPR + LIKI +G G LY
Sbjct: 260 NLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLY 295
Score = 35.4 bits (81), Expect = 1.1
Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 18/177 (10%)
Query: 70 LMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPE 128
L D R +M P + + + R +++ + + + F Q L + P
Sbjct: 45 LTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIFNKASTQ-LSFKVVRLPR 103
Query: 129 GPSAKFLVQ------NIHTLAELKMSGNCLKGSRPILSFDPAFDREP-QYALLKELLTQI 181
GPS F V ++ +L++ +M N P++ F + L+ +
Sbjct: 104 GPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIM-NNFSGDGKHLKLMATTFQNM 162
Query: 182 FGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALVEIG-PRFVLNLIK 235
F + + + FS + + R+Y +V +G R V ++K
Sbjct: 163 FPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHY-----SVQVVPVGLKRAVQKIVK 214
>pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii
dbj|BAA31023.1| (AP000007) 334aa long hypothetical protein [Pyrococcus horikoshii]
Length = 224
Score = 36.6 bits (84), Expect = 0.46
Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 18/129 (13%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI +S RTR DL ++P+S T+ K + + + + + K
Sbjct: 3 LITTSHRPTRRTRSFGHDLERVIPNSLYLTR--GKKTIQELLMEAYDRGYERLLIINVWK 60
Query: 116 KQDLYMWLSNS-PE--GPSAKFLVQNIHTLAELKMSG-NCLKGSRP------------IL 159
L M PE G + + E+ G N ++ P L
Sbjct: 61 GNPLKMTFIKVHPEDWGYLGYLYLHGVKLQREMGFKGLNPIREDMPLVITTAKRVGLDHL 120
Query: 160 SFDPAFDRE 168
+F F
Sbjct: 121 AFAQVFSEL 129
>pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (strain Orsay)
emb|CAB49198.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 224
Score = 36.2 bits (83), Expect = 0.66
Identities = 23/129 (17%), Positives = 38/129 (28%), Gaps = 18/129 (13%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI +S RTR DL + P+S T+ K + + + + + K
Sbjct: 3 LITTSHRPTRRTRSFGHDLERVFPNSLYMTR--GKKTIQELLMEAYDRGYERLLIINVWK 60
Query: 116 KQDLYMWLSNS---PEGPSAKFLVQNIHTLAELKMSG-NCLKGSRP------------IL 159
L M G + + E+ G N ++ P L
Sbjct: 61 GNPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHL 120
Query: 160 SFDPAFDRE 168
+F F
Sbjct: 121 AFAQVFSEL 129
>emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta]
Length = 186
Score = 35.8 bits (82), Expect = 0.69
Identities = 33/189 (17%), Positives = 67/189 (34%), Gaps = 25/189 (13%)
Query: 57 IFSSRGIN--FRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAK 114
I +S+ + + + P K K + + KN N IY
Sbjct: 7 ITTSKKPSKTLLKILHLLKKYLITPRYYKRNKF----KFRHLMIYLKRKNINNMIYLFEN 62
Query: 115 KKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALL 174
+ ++ + N E KF + N+ + + + P + + + +
Sbjct: 63 NNR-YFVSIVNFQENIHIKFGINNLLITSRISSI---IYKDYPEIIY--LNFKAQHEIYI 116
Query: 175 KELLTQIFGTPRYHPRSQPFVDH--IFTFSIADNRIWFRNYQIIEE----DAALVEIGPR 228
+++LTQI + P + + +S I+FR+++ I D + EIGPR
Sbjct: 117 QKVLTQILY------QVSPLTNRELLCIYSN-KGIIYFRSFRYIFSKNLRDVKIQEIGPR 169
Query: 229 FVLNLIKIF 237
++ I
Sbjct: 170 LNFKILNIL 178
>pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegans
gb|AAB97575.1| (AF043700) contains similarity to human RNA-binding protein FUS/TLS
(SW:Q28009) [Caenorhabditis elegans]
Length = 608
Score = 33.8 bits (77), Expect = 3.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPN---MHRRMIRLATA 267
+ L EIGPR L L+KI +G G LY + ++P+ R +
Sbjct: 336 SNVRLHEIGPRLTLELVKIEEGIDEGEVLYHKHNAKTPDELIKLRAHMDKKKQ 388
>gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melanogaster]
Length = 289
Score = 33.5 bits (76), Expect = 3.6
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 148 SGNCLKGSRPILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN 206
G C+K P L F+ P + + + L+ L F + ++H+ +F++ D+
Sbjct: 103 IGACVK---PCLVFNGPKWAQTEELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDD 159
Query: 207 -RIWFRNYQIIEED-------AALVEIGP 227
I R+Y+I+ + L EIGP
Sbjct: 160 MNILMRSYRILLKKSGQRTPRIELEEIGP 188
>ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae]
sp|P36160|YK61_YEAST HYPOTHETICAL 39.6 KDA PROTEIN IN MTD1-NUP133 INTERGENIC REGION
pir||S38159 hypothetical protein YKR081c - yeast (Saccharomyces cerevisiae)
emb|CAA81632.1| (Z27116) ORF YKR401 [Saccharomyces cerevisiae]
emb|CAA82160.1| (Z28306) ORF YKR081c [Saccharomyces cerevisiae]
Length = 344
Score = 33.1 bits (75), Expect = 5.7
Identities = 47/268 (17%), Positives = 89/268 (32%), Gaps = 50/268 (18%)
Query: 31 EATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETK-MDR 89
+ +N ++ L + N +M DL +L + + K +R
Sbjct: 6 KPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSAL---KKPDMKRFNR 62
Query: 90 KDKLFVVNEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQ-----N 138
K+ + ++ E +C+ + + KK+ M + G +++ N
Sbjct: 63 KNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRT-FGYKIYDMIELMVADN 121
Query: 139 IHTLAELKMSGNCLKGSRPILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDH 197
L++ K G +P+ +F AFD P Y +K L F + + H
Sbjct: 122 FKLLSDFKKL-TFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
Query: 198 IFTFSIADNR--------IWFRNYQ---IIEED-------AALVEIGPRFVLNLIKIFKG 239
+ + +I + + FR Y+ + LVEIGPR + +I
Sbjct: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRI--- 237
Query: 240 SFGGPTLYENPHYQSPNMHRRMIRLATA 267
H SP+M +
Sbjct: 238 -----------HTPSPDMVTEAHKKPKQ 254
Searching..................................................done
Results from round 4
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana] 337 2e-91
emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schiz... 323 2e-87
gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175... 319 4e-86
sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHR... 307 1e-82
gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melan... 306 4e-82
ref|NP_014565.1| Essential nucleolar protein required for biogen... 301 6e-81
gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melan... 286 2e-76
emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis tha... 285 5e-76
pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment) 274 1e-72
gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar... 274 1e-72
dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens] 272 4e-72
sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN ... 270 1e-71
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CH... 270 2e-71
sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CH... 267 1e-70
pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegan... 267 2e-70
pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana ... 266 3e-70
gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma... 254 1e-66
ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae] >gi|1730744|sp... 249 4e-65
gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melano... 248 6e-65
emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora cra... 248 8e-65
emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipoly... 247 1e-64
sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHR... 246 2e-64
ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae] >gi|731684|sp|... 234 1e-60
dbj|BAB10077.1| (AB010069) contains similarity to RNA binding pr... 188 7e-47
ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerev... 141 1e-32
emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapi... 140 3e-32
gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumoc... 140 3e-32
ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyc... 138 7e-32
ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens] >g... 137 1e-31
dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens] 132 6e-30
emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans] 115 7e-25
Sequences not found previously or not previously below threshold:
dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus] 117 2e-25
emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sap... 104 1e-21
ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens] 99 8e-20
pir||T39008 probable mating protein - fission yeast (Schizosacch... 98 2e-19
ref|NP_064615.1| peter pan (Drosophila) homolog; second-step spl... 97 2e-19
gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanoga... 82 8e-15
gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster] 80 3e-14
pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegan... 71 3e-11
ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae] >gi|549638|... 66 8e-10
gb|AAF39738.1|AC005935_5 (AC005935) RNA Binding Protein 1 [Leish... 61 2e-08
gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melano... 60 4e-08
gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces c... 60 4e-08
emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta] 54 3e-06
pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii ... 54 3e-06
pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (st... 54 4e-06
pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (str... 53 6e-06
emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfat... 53 6e-06
pir||T39206 hypothetical protein SPAC926.08c - fission yeast (S... 50 3e-05
dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~simil... 47 3e-04
dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizos... 38 0.19
sp|O60066|ALKB_SCHPO ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG >... 38 0.23
gb|AAH00535.1|AAH00535 (BC000535) Unknown (protein for MGC:3007)... 35 1.1
sp|Q58012|Y594_METJA HYPOTHETICAL PROTEIN MJ0594 >gi|2128398|pir... 35 1.2
gb|AAF60867.1| (AC024855) Hypothetical protein Y71G10AL.b [Caeno... 33 4.7
pir||F69190 conserved hypothetical protein MTH680 - Methanobacte... 33 5.5
sp|P35890|DNAA_RHIME CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA 32 9.5
>gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana]
Length = 315
Score = 337 bits (856), Expect = 2e-91
Identities = 119/281 (42%), Positives = 169/281 (59%), Gaps = 14/281 (4%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
M ++ ++ ++ E+ P ++NKE+VL+ S
Sbjct: 1 MGRKRKHSETVTAAPVKDSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTCS 60
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
R INFR RHLM ++ SL+PH + ++K++ + + +NE+ E+K + C++FE +K +DL
Sbjct: 61 RRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDL 120
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
YMW+ SP GPS KFLV +HT+ ELK++GN LKGSRP+L+F F+ + + LLKE+LT
Sbjct: 121 YMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLT 180
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII-------------EEDAALVEIG 226
QIFG P H +S+P+ DH+F FSI D+ IWFRNYQI + L+E+G
Sbjct: 181 QIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVG 240
Query: 227 PRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
PRF LN IKIF GSFGG TLYENP Y SPN R + + A
Sbjct: 241 PRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKA 281
>emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schizosaccharomyces
pombe]
Length = 295
Score = 323 bits (820), Expect = 2e-87
Identities = 125/293 (42%), Positives = 179/293 (60%), Gaps = 16/293 (5%)
Query: 22 KKQLAGSEQEATAGEEFIVPPPVSEGKWKN--------KERVLIFSSRGINFRTRHLMQD 73
+L SE+ +E PV G+ K++VL+ SSRG+ +R RHL+ D
Sbjct: 4 VYKLKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLND 63
Query: 74 LRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAK 133
L S+MPHS+ ++K+D KD+L+ +NE+ E+ NCN +FE+++++DLY+ ++ +P GP+ K
Sbjct: 64 LVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVK 123
Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQP 193
F V+N+HT+ EL M+GN LKGSRPILSFD FD P ++KELL Q FG P+ RS+P
Sbjct: 124 FHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKP 183
Query: 194 FVDHIFTFSIADNRIWFRNYQIIEED------AALVEIGPRFVLNLIKIFKGSFGGPTLY 247
F+D + T +IAD +IWFRNY+I E + L+EIGPRFV+ +I I +GSFGGP +Y
Sbjct: 184 FIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGSFGGPVIY 243
Query: 248 ENPHYQSPNMHRRMIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEAVF 300
+N + S M R IR A + VIP DP + VF
Sbjct: 244 KNDTFVSSTMVRAAIRNQAAQ--RYVNRQESKLERQVRAQQNVIPEDPLDNVF 294
>gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175 [Arabidopsis thaliana]
Length = 320
Score = 319 bits (810), Expect = 4e-86
Identities = 122/287 (42%), Positives = 175/287 (60%), Gaps = 22/287 (7%)
Query: 1 MSAYKRKRGSLPEVATNTKK------AKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKER 54
M ++ + K+ L G + ++ E ++ +KNKE+
Sbjct: 1 MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKA--KALTSSGFKNKEK 58
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNKCIYFEA 113
VL+ SR I+FR R LM ++ SL+PH + ++K++ + K +NE+ E+KN N C++FE
Sbjct: 59 VLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFEC 118
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+K +DLYMW+ SP GPS KFLV+ +H + E+K++GN LKGSRP+L+F FD++ + L
Sbjct: 119 RKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKL 178
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII-------------EEDA 220
LKE+LTQ+FG P+ H +S+P+ DH+F FSI D IWFRNYQI +
Sbjct: 179 LKEMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKM 238
Query: 221 ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A
Sbjct: 239 TLIEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKA 285
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
pir||S44853 K12H4.3 protein - Caenorhabditis elegans
gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank: CE5D1 (Z14791),
CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
putative [Caenorhabditis elegans]
Length = 352
Score = 307 bits (780), Expect = 1e-82
Identities = 125/264 (47%), Positives = 184/264 (69%), Gaps = 4/264 (1%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSR 61
SA+++ ++ + ++ + E W N+ERVL+ SR
Sbjct: 15 SAHQKMEWEAAGAKDSSSDDSSDESDNDDQPKQATEET---RKRAELWTNRERVLVLCSR 71
Query: 62 GINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYM 121
G + RTR+LM+D++ L+PH++ ++K+D++ L V+NE+ EMKNC K +YFE++K++D Y+
Sbjct: 72 GADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKVMYFESRKRKDTYL 131
Query: 122 WLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181
W+SN +GPS KFLV N+HT+ ELKMSGNCL+ SRP+LSFD AFD++PQ L+K +L Q
Sbjct: 132 WMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQT 191
Query: 182 FGTPRYHPRSQPFVDHIFTFSIAD-NRIWFRNYQIIEEDAALVEIGPRFVLNLIKIFKGS 240
GTP +HPRSQPFVDH+F FS+ + ++IWFRN+QI++E L E+GPRFVL ++++F GS
Sbjct: 192 LGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGPRFVLEMVRLFAGS 251
Query: 241 FGGPTLYENPHYQSPNMHRRMIRL 264
F G LY+NP+Y SPN+ RR R
Sbjct: 252 FEGAVLYDNPNYVSPNVIRREHRK 275
>gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melanogaster]
Length = 359
Score = 306 bits (776), Expect = 4e-82
Identities = 135/237 (56%), Positives = 180/237 (74%), Gaps = 2/237 (0%)
Query: 32 ATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD 91
+ +VP + KW NK+RVL+FS+RGI+ R RHLM+D+++LMPH R E+KM+R
Sbjct: 29 PQRSSDDVVPKKARKEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSK 88
Query: 92 KLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNS--PEGPSAKFLVQNIHTLAELKMSG 149
L VVNE+CEMK+CNK + FE ++K+DLYMW+SN+ GPSAKFL++NIHT+AELKM+G
Sbjct: 89 TLSVVNEMCEMKHCNKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTG 148
Query: 150 NCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIW 209
NCL+GSRP+LSFD FD P LLKEL Q + P +HP+SQPFVDH+FTF+ D RIW
Sbjct: 149 NCLRGSRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIW 208
Query: 210 FRNYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
FRN+QI+ ED L E+GPR+V+N +KIF GSF G T++ENP Y SP+ R++++ A
Sbjct: 209 FRNFQILSEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKAA 265
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 301 bits (765), Expect = 6e-81
Identities = 124/278 (44%), Positives = 167/278 (59%), Gaps = 14/278 (5%)
Query: 33 TAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDK 92
+ + + ++ NK+R L+ SSRG+N+R RHL+QDL L+PHSR E K+D K
Sbjct: 11 KSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKD 70
Query: 93 LFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCL 152
L +NE+ E+ NCN ++FEA+K QDLY+WLS P GP+ KF +QN+HT+ EL +GNCL
Sbjct: 71 LQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCL 130
Query: 153 KGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN 212
KGSRP+LSFD F+ P Y L+KELL F P +S+PF+DH+ +FSI D++IW R
Sbjct: 131 KGSRPVLSFDQRFESSPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRT 190
Query: 213 YQII------------EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRR 260
Y+I EED +LVEIGPRFV+ +I I +GSFGGP +YEN Y SPN+ R
Sbjct: 191 YEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRA 250
Query: 261 MIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEA 298
I+ A V+ DP
Sbjct: 251 QIKQQAAE--EAKSRAEAAVERKIKRRENVLAADPLSN 286
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 286 bits (727), Expect = 2e-76
Identities = 49/260 (18%), Positives = 105/260 (39%), Gaps = 20/260 (7%)
Query: 9 GSLPEVATNTKKAKKQLAG---SEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINF 65
S+ E K K+ S + A G + ++++ +S +
Sbjct: 34 KSINENKAIGSKNVKKSLTAYKSLKYADEGVDDRTVNDEYHYAGCEDPKIMLTTSHNPSS 93
Query: 66 RTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSN 125
R + M++LR ++P+++ + + +L + C N + + + + +
Sbjct: 94 RLKMFMKELRLIIPNAQQMNRGN--YQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCH 151
Query: 126 SPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTP 185
P GP+A F + ++ ++ G + +P L F F +K +L +F P
Sbjct: 152 LPYGPTAFFNISDVVMRHDIPDIG-HMSEQKPHLIF-NNFKTPIGLRTVK-ILKHLFPVP 208
Query: 186 RYHPRSQPFVDHIFTFSIADNRIWFRNYQ--IIEEDAALVEIGPRFVLNLIKIFKGSFG- 242
+ + + + +F ++ I FR++Q + ++ L E+GPRF L L +I G+
Sbjct: 209 KENSQ------RVMSFLNHNDSIIFRHHQYKYVNKELELTEVGPRFSLKLYQIKLGTLEN 262
Query: 243 ---GPTLYENPHYQSPNMHR 259
T + N Y + + R
Sbjct: 263 IKAADTEWINRPYMNTSQKR 282
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
Length = 343
Score = 285 bits (723), Expect = 5e-76
Identities = 52/285 (18%), Positives = 97/285 (33%), Gaps = 35/285 (12%)
Query: 3 AYKRKRGSLPEVATNTKKAKKQLAGSEQE-----ATAGEEFIVPP-PVSEGKWKNK--ER 54
A +++ L E K E + E F + + +
Sbjct: 69 AAEKRALELGEEPPQKMIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPK 128
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAK 114
VL+ + R + R L+ +L S++P+S + + L + E K+ I
Sbjct: 129 VLLTTCRFNSTRGPALISELLSVIPNSHYQKR--GTYDLKKIVEYATKKDFTSLIVVHTN 186
Query: 115 KKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALL 174
+++ + + P GP+A F + N+ ++K GN P L + R +
Sbjct: 187 RREPDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNPTSHQ-PELVLNNFTTRLGN--RV 243
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAA------------- 221
+F + TF + I+FR+++ I E
Sbjct: 244 GRFFQSLFPPDPNFR-----GRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKP 298
Query: 222 -LVEIGPRFVLNLIKIFKGSFG---GPTLYENPHYQSPNMHRRMI 262
L E GPRF L L+ + G+F G + + + R +
Sbjct: 299 RLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 274 bits (696), Expect = 1e-72
Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 19/257 (7%)
Query: 12 PEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNK--ERVLIFSSRGINFRTRH 69
P T + + + + ++LI +S + RT
Sbjct: 7 PVPKTIDNQRVYDETTV-DPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVR 65
Query: 70 LMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEG 129
L + L +++P+S + R L + C ++ I +K + LS+ P G
Sbjct: 66 LCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNG 123
Query: 130 PSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHP 189
P+A F + ++ E+K G P + + R + + +F
Sbjct: 124 PTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGH--SIGRMFASLFPHNP--- 178
Query: 190 RSQPFVDHIFTFSIADNRIWFRNYQIIE---EDAALVEIGPRFVLNLIKIFKGSFG---G 243
Q + TF + I+FR ++ I + + E+GPRF L L + KG+F G
Sbjct: 179 --QFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYG 236
Query: 244 PTLYENPH-YQSPNMHR 259
+ + + +
Sbjct: 237 EYEWVHKPREMDTSRRK 253
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
1537-3735 [Arabidopsis thaliana]
gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
73469-75667 [Arabidopsis thaliana]
Length = 294
Score = 274 bits (695), Expect = 1e-72
Identities = 51/250 (20%), Positives = 95/250 (37%), Gaps = 21/250 (8%)
Query: 23 KQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSR 82
+Q E + TA + ++L+ +SR + ++L+ + P+S+
Sbjct: 54 RQEIDLEDQNTA-VPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQ 112
Query: 83 AETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTL 142
+ + + E + I + + +S+ P GP+A F + N+ T
Sbjct: 113 RINR--GSQVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTR 170
Query: 143 AEL--KMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFT 200
++ K S + P L F+ + Q + +L IF P+ + I T
Sbjct: 171 HDISDKKSIGKMPEQYPHLIFNNFTTQMGQ--RVGNILKHIFPAPKLDAK------RIVT 222
Query: 201 FSIADNRIWFRNYQII-----EEDAALVEIGPRFVLNLIKIFKGSF---GGPTLYENPHY 252
FS + I FRN+ + L EIGPRF L L ++ G+ + Y
Sbjct: 223 FSNQSDYISFRNHVYDKGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPY 282
Query: 253 QSPNMHRRMI 262
+ + R+ I
Sbjct: 283 MNTSKKRKFI 292
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 272 bits (690), Expect = 4e-72
Identities = 50/277 (18%), Positives = 101/277 (36%), Gaps = 27/277 (9%)
Query: 1 MSAYKRKRGSLPEVATNT-KKAKKQLAGS-----EQEATAGEEFIVPP---PVSEGKWKN 51
++A K+ + + K + + E +E + +
Sbjct: 79 LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNK 138
Query: 52 K--ERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCI 109
+ ++LI +S + RT L + L +++P+S + R L + C ++ I
Sbjct: 139 QTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLI 196
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREP 169
+K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 197 VINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLG 256
Query: 170 QYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE---EDAALVEIG 226
+ + +F Q + TF + I+FR ++ I + + E+G
Sbjct: 257 H--SIGRMFASLFPHNP-----QFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELG 309
Query: 227 PRFVLNLIKIFKGSFG---GPTLYENPH-YQSPNMHR 259
PRF L L + KG+F G + + + +
Sbjct: 310 PRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRK 346
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
Length = 289
Score = 270 bits (685), Expect = 1e-71
Identities = 46/243 (18%), Positives = 95/243 (38%), Gaps = 18/243 (7%)
Query: 18 TKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSL 77
+ +K E AT E + + +VL+ +SR + R +++R L
Sbjct: 49 DSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLL 108
Query: 78 MPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLV 136
+P+S +++R + + + E + + + + +S+ P GP+ F +
Sbjct: 109 IPNS---YRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSL 165
Query: 137 QNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVD 196
N+ ++ +G + + P L F+ + +K L+ +F
Sbjct: 166 HNVVLRHDIPNTGT-MSEAYPHLIFENLTSKLG--KRVKTALSALFPPDPKDTTP----- 217
Query: 197 HIFTFSIADNRIWFRNYQI---IEEDAALVEIGPRFVLNLIKIFKGS---FGGPTLYENP 250
+ TF+ D+ I FR++ + L E GPRF + L +I G+ ++
Sbjct: 218 RVVTFANTDDYISFRHHIYAKTGPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLK 277
Query: 251 HYQ 253
YQ
Sbjct: 278 PYQ 280
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 270 bits (685), Expect = 2e-71
Identities = 48/271 (17%), Positives = 101/271 (36%), Gaps = 18/271 (6%)
Query: 4 YKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGI 63
++ R +L +K + + G + +++I +SR
Sbjct: 29 REKIRNALENNTKIDYNLRKDAIELAKGSDWGGQQYETDSEYRWAGAQDPKIVITTSRDP 88
Query: 64 NFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWL 123
+ R + ++++ + P+++ + + V + + ++ I F + M +
Sbjct: 89 SSRLKMFAKEMKLIFPNAQRINR--GHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLV 146
Query: 124 SNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFG 183
+ P GP+A F + N+ ++ G + P L FD + +L +F
Sbjct: 147 CHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDNLNSKLGH--RFTTILKHLFP 203
Query: 184 TPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIKIFKGS 240
P +P I TFS +++ I FR++ E + L E GPRF L +I G+
Sbjct: 204 VP------KPDSKRIITFSNSEDYISFRHHVYKTENDGEVELTEAGPRFELKPYQIKLGT 257
Query: 241 FG----GPTLYENPHYQSPNMHRRMIRLATA 267
+ Y + R + ++ A
Sbjct: 258 LETLAAAEDEWVLRSYTNTARKRTFLSISRA 288
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
Length = 754
Score = 267 bits (677), Expect = 1e-70
Identities = 55/295 (18%), Positives = 105/295 (34%), Gaps = 43/295 (14%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEAT------AGEEFIVPPPVSEGKWKNK--E 53
+ R L E A + K + E +AT E + +
Sbjct: 469 GERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSP 528
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
+V+I + T +L+ +P+S T+ + L + E + + +
Sbjct: 529 KVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL--LKTIIEQAKEREFTDLLVVHE 586
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLKGSR----------- 156
+K+ + + PEGP+A F + ++ +LK+ CLK +
Sbjct: 587 DRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGESTSH 646
Query: 157 -PILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P + + R + +L +F + + TF + I+FR+++
Sbjct: 647 FPEVILNNFNTRLGH--NIARMLACLFPHDP-----KFTGRRVVTFHNQRDYIFFRHHRY 699
Query: 216 IEE----DAALVEIGPRFVLNLIKIFKGSFG---GPTLYEN-PHYQSPNMHRRMI 262
+ AAL+E+GPRF L L + KG+F G + H + R +
Sbjct: 700 EFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 754
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
Length = 746
Score = 267 bits (676), Expect = 2e-70
Identities = 55/295 (18%), Positives = 105/295 (34%), Gaps = 43/295 (14%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEAT------AGEEFIVPPPVSEGKWKNK--E 53
+ R L E A + K + E +AT E + +
Sbjct: 461 GERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSP 520
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
+V+I + T +L+ +P+S T+ + L + E + + +
Sbjct: 521 KVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL--LKTIIEQAKEREFTDLLVVHE 578
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLKGSR----------- 156
+K+ + + PEGP+A F + ++ +LK+ CLK +
Sbjct: 579 DRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGESTSH 638
Query: 157 -PILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P + + R + +L +F + + TF + I+FR+++
Sbjct: 639 FPEVILNNFNTRLGH--NIARMLACLFPHDP-----KFTGRRVVTFHNQRDYIFFRHHRY 691
Query: 216 IEE----DAALVEIGPRFVLNLIKIFKGSFG---GPTLYEN-PHYQSPNMHRRMI 262
+ AAL+E+GPRF L L + KG+F G + H + R +
Sbjct: 692 EFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 746
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
F44G4.1 (GB:Z49910) and several yeast hypothetical
proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
region (SP:P38805) [Arabidopsis thaliana]
Length = 434
Score = 266 bits (674), Expect = 3e-70
Identities = 51/302 (16%), Positives = 95/302 (30%), Gaps = 58/302 (19%)
Query: 3 AYKRKRGSLPEV-------------ATNTKKAKKQLAGSEQE-----ATAGEEFIVPP-P 43
A +++ L E K E + E F
Sbjct: 69 AAEKRALELGEEVTIWRSFFRDFLKPPQKMIPKTIENTRESDETVCRPDDEELFADIDAD 128
Query: 44 VSEGKWKNK--ERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCE 101
+ + +VL+ + R + R L+ +L S++P+S + + L + E
Sbjct: 129 EFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHYQKR--GTYDLKKIVEYAT 186
Query: 102 MKNCNKCIYFEAKKKQD-------LYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKG 154
K+ I +++ + + P GP+A F + N+ ++K GN
Sbjct: 187 KKDFTSLIVVHTNRREPAFAISYVDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNPTSH 246
Query: 155 SRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQ 214
P L + R + +F + TF + I+FR+++
Sbjct: 247 Q-PELVLNNFTTRLGN--RVGRFFQSLFPPDPNFR-----GRRVVTFHNQRDFIFFRHHR 298
Query: 215 IIEEDAA--------------LVEIGPRFVLNLIKIFKGSFG---GPTLYENP---HYQS 254
I E L E GPRF L L+ + G+F G + +
Sbjct: 299 YIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKVKSPEMD 358
Query: 255 PN 256
+
Sbjct: 359 TS 360
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
Length = 287
Score = 254 bits (644), Expect = 1e-66
Identities = 43/274 (15%), Positives = 104/274 (37%), Gaps = 26/274 (9%)
Query: 2 SAYKRKRGSLPEVAT------NTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERV 55
+ ++ R ++ K+ + + T + RV
Sbjct: 27 ARKEQFREAVSNATPLPGHLHKDALRLKKFTELDDDQTRTLQ-TSVDDEYANAGVEDPRV 85
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFEAK 114
L+ +SR + + +++R ++P + +M+R + + + + + + +
Sbjct: 86 LVTTSREPSQKLLEFAKEIRLVIPSAV---RMNRGNLSVRQLMDAARRGQYSDVVVLQES 142
Query: 115 KKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALL 174
+ + +S+ P GP+ F + N+ T +++ G + P L F+ R +
Sbjct: 143 QGVPDSLTVSHLPLGPTVVFTIHNLVTRHDIQDVGT-MSEQHPHLIFENFTTRLG--RRV 199
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII---EEDAALVEIGPRFVL 231
+++L +F P +P + TF ++ + FR++ + L E+GPR +
Sbjct: 200 RDVLKFLFPVP------KPRPTRVLTFDNQNDFVSFRHHTFRAVKGREVQLTEVGPRMDV 253
Query: 232 NLIKIFKGSFG---GPTLYENPHYQSPNMHRRMI 262
+I G+ T + Y + RR++
Sbjct: 254 APYRITLGTLEMDDAETEWVLQPYMNTAKKRRLL 287
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
Length = 290
Score = 249 bits (631), Expect = 4e-65
Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 28/272 (10%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGK-WKNKERVLIFS 59
++ K L E + K + + E + + R+++ +
Sbjct: 36 LAQGKPLPKELAEDESLQKDFRYDQSLKES---EEADDLQVDDEYAATSGIMDPRIIVTT 92
Query: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
SR + R ++++ L P++ + + + + + C+ + +
Sbjct: 93 SRDPSTRLSQFAKEIKLLFPNAVRLNRGN--YVMPNLVDACKKSGTTDLVVLHEHRGVPT 150
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
+ +S+ P GP+A+F + N+ ++ +GN P L FD + +L
Sbjct: 151 SLTISHFPHGPTAQFSLHNVVMRHDIINAGNQ-SEVNPHLIFDNFTTALG--KRVVCILK 207
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII--EEDAALVEIGPRFVLNLIKIF 237
+F + + + TF+ + I R + + E + E+GPRF + L ++
Sbjct: 208 HLFNAGP-----KKDSERVITFANRGDFISVRQHVYVRTREGVEIAEVGPRFEMRLFELR 262
Query: 238 KGSFG---GPTLYENPHYQSPNMHRRMIRLAT 266
G+ + RR IR A
Sbjct: 263 LGTLENKDADVEW---------QLRRFIRTAN 285
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
Length = 394
Score = 248 bits (629), Expect = 6e-65
Identities = 43/254 (16%), Positives = 100/254 (38%), Gaps = 20/254 (7%)
Query: 3 AYKRKRGSLPEVATNT----KKAKKQLAGSEQEATAGE-EFIVPPPVSEGKWKN--KERV 55
R++ +P +T ++ + + ++ E + + ++ + +V
Sbjct: 128 RRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKV 187
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI + +TR +L + P++ K+ K + + + E + + +
Sbjct: 188 LITFADNPVTKTRKFGLELSRIFPNA--LVKIRNKSSVKKICKSAEREEFTDVVIVNEDR 245
Query: 116 KQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLK 175
++ + + + P GP+A F + N+ +++K + RP + + R +
Sbjct: 246 RKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLG--LTVG 303
Query: 176 ELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE----EDAALVEIGPRFVL 231
+L +F H + TF + I+FR+++ + L E+GPRF L
Sbjct: 304 RMLGALF-----HHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTL 358
Query: 232 NLIKIFKGSFGGPT 245
L + +G+F T
Sbjct: 359 KLRSLQEGTFDSKT 372
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 248 bits (628), Expect = 8e-65
Identities = 53/271 (19%), Positives = 103/271 (37%), Gaps = 22/271 (8%)
Query: 4 YKRKRGSLPEVATNTK---KAKKQLAGSEQEATAGE--EFIVPPPVSEGK-WKNKERVLI 57
+ R +L K K+ + + + + I R+L+
Sbjct: 29 RAKLRSALASGKPLDPEIAKDKELRKDFDYDVSRDVNGDAIDIDDEYSELSGVIDPRILV 88
Query: 58 FSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFEAKKK 116
+SR + R +++R L+P S +++R + L + + +N + +
Sbjct: 89 TTSRDPSSRLGQFSKEIRLLLPTSV---RLNRGNLVLEDLVGAAKAQNLTDVVLLHEHRG 145
Query: 117 QDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCL-KGSRPILSFDPAFDREPQYALLK 175
M +S+ P GP+ + N+ A++ S S P L F+ F + ++K
Sbjct: 146 VPTAMTISHFPHGPTLMVSLHNVVLRADIPKSIKGTVSESYPRLIFE-GFSTKLGERVVK 204
Query: 176 ELLTQIFGTPRYHPRSQPFVD-HIFTFSIADNRIWFRNYQII---EEDAALVEIGPRFVL 231
+L +F P P +P V + TF D+ I R++ + + L E+GPRF +
Sbjct: 205 -ILKHLF--PPREPTQKPNVGNRVITFVNNDDTIEVRHHVYVRTSYDSVELSEVGPRFTM 261
Query: 232 NLIKIFKGSF---GGPTLYENPHYQSPNMHR 259
KI G+ T + Y + +
Sbjct: 262 KPFKITMGTLDNKDADTEWHLSQYTRTSRKK 292
>emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipolytica]
Length = 333
Score = 247 bits (627), Expect = 1e-64
Identities = 44/258 (17%), Positives = 89/258 (34%), Gaps = 19/258 (7%)
Query: 5 KRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGIN 64
K KR + T K + E + +VLI +S+
Sbjct: 89 KEKRLAENVPDTIEAKRVYDETIA-----QEMEGEDEFKEYFEEG-KPPKVLITTSKRAR 142
Query: 65 FRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLS 124
+ L ++P S + ++ + + ++C ++ + KK+ +
Sbjct: 143 GQAYDFADLLYDIIPGSEFKKRV-GDFTMTQIAKMCAERDYTDLVVINEDKKKVNGLTFI 201
Query: 125 NSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGT 184
+ PEGP+ F V ++ E+K G P L + R + L +F
Sbjct: 202 HLPEGPTMYFSVSSLKMPKEIKGHGRSTT-HIPELILNNFSTRLG--KTVGRLFQSMFPQ 258
Query: 185 PRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIKIFKGSF 241
+ T + I+FR ++ + + L E+GP+F L L ++ +G
Sbjct: 259 QPEF-----VGRQVVTLHNQRDWIFFRRHRYVFKNEERVGLQELGPQFTLRLRRLQRG-I 312
Query: 242 GGPTLYENPHYQSPNMHR 259
G +E+ + +
Sbjct: 313 RGEVEWEHRSAMDKDKKK 330
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
pir||T38834 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
Length = 306
Score = 246 bits (624), Expect = 2e-64
Identities = 42/251 (16%), Positives = 83/251 (32%), Gaps = 21/251 (8%)
Query: 4 YKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNK---ERVLIFSS 60
KR R S AT K E + + + + + ++L+ +S
Sbjct: 42 KKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTS 101
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLY 120
+ + + +L P++ + ++ + E + + +K+
Sbjct: 102 KRASRKCYDFASELLDCFPNAEFRKR-TGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNA 160
Query: 121 MWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQ 180
+ L + P GPS F + N+ T E+ G G P L F +
Sbjct: 161 LTLVHLPNGPSFYFTLSNLQTAKEISNHGRS-TGHIPELII-NNFSTRLGM-TVARAFQS 217
Query: 181 IFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDA---------ALVEIGPRFVL 231
+F Q + T + ++FR ++ + L E+GPRF +
Sbjct: 218 LFIQTP-----QIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQELGPRFTM 272
Query: 232 NLIKIFKGSFG 242
L + KG +
Sbjct: 273 RLRMVQKGVWD 283
>ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae]
sp|P38805|YHO8_YEAST HYPOTHETICAL 35.1 KDA PROTEIN IN NAM8-GAR1 INTERGENIC REGION
pir||S46718 hypothetical protein YHR088w - yeast (Saccharomyces cerevisiae)
gb|AAB68926.1| (U00060) Yhr088wp [Saccharomyces cerevisiae]
Length = 295
Score = 234 bits (593), Expect = 1e-60
Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 23/269 (8%)
Query: 4 YKRKRGSLPEVAT------NTKKAKKQLAGSEQEAT----AGEEFIVPPPVSEGKWKNKE 53
+++ E + + T +
Sbjct: 34 RRKRAKEERENPELREQRLKENVTQTIENTRVYDETINKEVEGDEDDLMRYFNSNSNEPP 93
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
++ + ++ L ++P+ K KL ++++C +N +
Sbjct: 94 KIFLTTNVNAKKSAYEFANILIEILPN-VTFVKRKFGYKLKEISDICIKRNFTDIVIINE 152
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
KK+ + + PEGP+ F + + + ++ G P L + R Q
Sbjct: 153 DKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTS-HIPELILNNFQTRLGQ--T 209
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEED---AALVEIGPRFV 230
+ L I + T + I+FR ++ + +D L E+GP+F
Sbjct: 210 VGRLFQSILPQNPD-----IEGRQVITLHNQRDYIFFRRHRYVFKDNERVGLQELGPQFT 264
Query: 231 LNLIKIFKGSFGGPTLYENPHYQSPNMHR 259
L L ++ +G T +E+ +
Sbjct: 265 LKLKRLQRGIKE-ETEWEHKPEMDKEKKK 292
>dbj|BAB10077.1| (AB010069) contains similarity to RNA binding
protein~gene_id:MAC9.8 [Arabidopsis thaliana]
Length = 346
Score = 188 bits (475), Expect = 7e-47
Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 10/202 (4%)
Query: 40 VPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLR-SLMPHSRAETKMDRKDKLFVVNE 98
VS + +FS + + L DLR ++P++ K +++ L
Sbjct: 21 NQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLN 80
Query: 99 VCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCL 152
V + +K L + ++ +P+GP+ F + +++ L
Sbjct: 81 VSGPMGVTHFLML-SKTASSLSLRVARTPQGPTLTFKIHQYSLASDIAQSQLRPRCPQDL 139
Query: 153 KGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWF 210
S P++ +E L + IF + + + + I F
Sbjct: 140 FKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLSTCQRLVLLNYNKDTKLIDF 199
Query: 211 RNYQIIEEDAALVEIGPRFVLN 232
R+Y I + + +FV N
Sbjct: 200 RHYSIRLQPVGVSRRIRKFVQN 221
Score = 33.0 bits (75), Expect = 5.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 220 AALVEIGPRFVLNLIKIFKG 239
L EIGPR + L+K+ +G
Sbjct: 273 VKLQEIGPRMTMQLVKVEEG 292
>ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerevisiae]
sp|P38789|SSF1_YEAST SSF1 PROTEIN
pir||S46700 SSF1 protein - yeast (Saccharomyces cerevisiae)
gb|AAB68379.1| (U00061) Ssf1p [Saccharomyces cerevisiae]
gb|AAA79980.1| (U18113) Ssf1p [Saccharomyces cerevisiae]
Length = 453
Score = 141 bits (354), Expect = 1e-32
Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 29/198 (14%)
Query: 53 ERVLIF----SSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNK 107
+ ++ +S N L++D R +M PH+ + K + +KL +C
Sbjct: 23 PKSMVIRVGQTSL-ANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81
Query: 108 CIYF-EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELK------MSGNCLKGSRPILS 160
F +++K ++ + ++ +P+GP+ F V + ++K S N P L
Sbjct: 82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141
Query: 161 FDPAFDREPQ----------YALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--- 207
F + ++ + IF S + + F I +R
Sbjct: 142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRV--FMINKDRETG 199
Query: 208 -IWFRNYQIIEEDAALVE 224
I R+Y I + +
Sbjct: 200 EISMRHYFIDIREVEISR 217
Score = 40.0 bits (93), Expect = 0.041
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
+ L E+GPR L L+KI +G G L+ +S + + + A
Sbjct: 324 KAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAA 373
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 140 bits (350), Expect = 3e-32
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 99 VCEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKMSGNCLKGS 155
+ + +C+ ++ KK+ + + + + + ++N +L ++K S C +G+
Sbjct: 70 LSKKSDCSLFMFGSYNKKRPNNLVIGHMYDYHVLDMIELGIENFVSLKDIKNS-KCPEGT 128
Query: 156 RPILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQ 214
+P+L F F+ Y LK LLT F P ++++ F+ + +I+FR Y+
Sbjct: 129 KPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAGLEYVLHFTALNGKIYFRRYK 188
Query: 215 IIEED-------AALVEIGPRFVLNLIK 235
++ + L EIGP L L +
Sbjct: 189 LLLKKSGCRTPRIELEEIGPSLNLVLRR 216
>gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumocystis carinii f. sp.
carinii]
Length = 277
Score = 140 bits (350), Expect = 3e-32
Identities = 29/147 (19%), Positives = 55/147 (36%), Gaps = 14/147 (9%)
Query: 119 LYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELL 178
+ + + P GPS F + +I + + G P L F ++ +
Sbjct: 135 DSLIIIHLPSGPSFYFTISSITPTSCIYRHGRATS-HIPELII-NNFTTYLGL-TVENMF 191
Query: 179 TQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIK 235
+F T ++ + T + I+ R ++ I + +L E+GPRF L L +
Sbjct: 192 RSLFPT-----QADFEGRQVVTIHNQRDFIFIRRHRYIFKNDIKVSLQELGPRFTLKLRR 246
Query: 236 IFKGSFG---GPTLYENPHYQSPNMHR 259
+ +G +YE + N R
Sbjct: 247 LQRGIHDRHADNVVYEYKPGEESNRTR 273
>ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyces cerevisiae]
sp|Q12153|SSF2_YEAST SSF2 PROTEIN
pir||S50248 SSF2 protein - yeast (Saccharomyces cerevisiae)
gb|AAA79981.1| (U18114) Ssf2p [Saccharomyces cerevisiae]
gb|AAB64748.1| (U28374) Ssf2p [Saccharomyces cerevisiae]
Length = 453
Score = 138 bits (347), Expect = 7e-32
Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 29/198 (14%)
Query: 53 ERVLIF----SSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNK 107
+ ++ +S N L++D R +M PH+ + K + +KL +C
Sbjct: 23 PKSMVIRVGQTSL-ANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81
Query: 108 CIYF-EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELK------MSGNCLKGSRPILS 160
F +++K ++ + ++ +P+GP+ F V + ++K S N P L
Sbjct: 82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141
Query: 161 FDPAFDREPQ----------YALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--- 207
F + ++ + IF S + I F I +R
Sbjct: 142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRI--FMINKDRETG 199
Query: 208 -IWFRNYQIIEEDAALVE 224
I R+Y I + +
Sbjct: 200 EISMRHYFIDIREVEISR 217
Score = 39.6 bits (92), Expect = 0.062
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
+ L E+GPR L L+KI G G L+ +S + + + A
Sbjct: 324 KAIKLTELGPRLTLKLVKIEDGICSGKVLHHEFVQKSSEEIKALEKRHAA 373
>ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens]
ref|XP_003882.1| hypothetical protein FLJ11100 [Homo sapiens]
dbj|BAA92003.1| (AK001962) unnamed protein product [Homo sapiens]
Length = 129
Score = 137 bits (344), Expect = 1e-31
Identities = 86/131 (65%), Positives = 95/131 (71%), Gaps = 11/131 (8%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEE---------FIVPPPVSEGKWKN 51
M+A KRKR A KK K+ +E A +P PV +GKWKN
Sbjct: 1 MAATKRKR--RGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKN 58
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
KER+LIFSSRGINFRTRHLMQDLR LMPHS+A+TKMDRKDKLFV+NEVCEMKNCNKCIYF
Sbjct: 59 KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYF 118
Query: 112 EAKKKQDLYMW 122
EAKKKQDLYMW
Sbjct: 119 EAKKKQDLYMW 129
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 132 bits (330), Expect = 6e-30
Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 100 CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKMSGNCLKGSR 156
+ +C+ ++ KK+ + + + + ++N +L ++K S C +G++
Sbjct: 82 SKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNS-KCPEGTK 140
Query: 157 PILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P+L F FD Y LK LL F P ++++ F+ + +I+FR+Y++
Sbjct: 141 PMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKL 200
Query: 216 IEED-------AALVEIGPRFVLNLIK 235
+ + L E+GP L L +
Sbjct: 201 LLKKSGCRTPRIELEEMGPSLDLVLRR 227
>dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus]
Length = 306
Score = 117 bits (292), Expect = 2e-25
Identities = 32/179 (17%), Positives = 72/179 (39%), Gaps = 18/179 (10%)
Query: 100 CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKMSGNCLKGSR 156
+ +C+ ++ KK+ + + + + ++ +L ++K + C +G++
Sbjct: 82 SKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIEKFVSLKDIK-TSKCPEGTK 140
Query: 157 PILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P+L F FD + LK LL F P ++++ F+ + +++FR+Y++
Sbjct: 141 PMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAGLEYVLHFTALNGKVYFRSYKL 200
Query: 216 IEED-------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPN---MHRRMIRL 264
+ + L E+GP L + + S LY+ R+ I
Sbjct: 201 LLKKSGCRTPRIELEEMGPSLDLVMRRTHLAS---DDLYKLSMKVPKALKPKKRKNISQ 256
>emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans]
Length = 97
Score = 115 bits (287), Expect = 7e-25
Identities = 21/101 (20%), Positives = 38/101 (36%), Gaps = 10/101 (9%)
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE---E 218
+ F+ + L IF + T + I+FR ++ I E
Sbjct: 1 NNNFNSRLG-KTVGRLFQSIFPHKPEL-----QGRQVITLHNQRDYIFFRRHRYIFRNEE 54
Query: 219 DAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHR 259
L E+GP+F L L ++ KG G ++E+ + +
Sbjct: 55 KVGLQELGPQFTLKLRRMQKG-VRGDVVWEHRPDMERDKKK 94
>emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sapiens]
Length = 794
Score = 104 bits (259), Expect = 1e-21
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 12/182 (6%)
Query: 53 ERVLIFSSRGINFR-TRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIY 110
+F+ RG R R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFT-RGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLI 87
Query: 111 FEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPA 164
+K + ++Y L P GP+ F V+ + ++ S P+L +
Sbjct: 88 L-SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSF 146
Query: 165 FDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAAL 222
L+ + +F + H + + + + FR+Y I
Sbjct: 147 GPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGA 206
Query: 223 VE 224
Sbjct: 207 SR 208
Score = 37.6 bits (87), Expect = 0.22
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens]
Length = 473
Score = 98.8 bits (244), Expect = 8e-20
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 12/182 (6%)
Query: 53 ERVLIFSSRGINFR-TRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIY 110
+F+ RG R R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFT-RGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLI 87
Query: 111 FEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPA 164
+K + ++Y L P GP+ F V + ++ S P+L +
Sbjct: 88 L-SKTETNVYFKLMRLPGGPTLTFQVLQYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSF 146
Query: 165 FDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAAL 222
L+ + +F + H + + + + FR+Y I
Sbjct: 147 GPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGA 206
Query: 223 VE 224
Sbjct: 207 SR 208
Score = 35.7 bits (82), Expect = 0.75
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
Length = 361
Score = 98.0 bits (242), Expect = 2e-19
Identities = 28/167 (16%), Positives = 58/167 (33%), Gaps = 13/167 (7%)
Query: 70 LMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPE 128
L +DLR +M PH+ K + +K+ + + ++ + + + +P
Sbjct: 17 LTRDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVL-SRTDNNANLRIIRAPR 75
Query: 129 GPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILS---FDPAFDR-EPQYALLKELL 178
GPS F + ++ S + P+L F+ + P ALL
Sbjct: 76 GPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTF 135
Query: 179 TQIFGTPRYHPRSQPFVDHIFTFSIADN-RIWFRNYQIIEEDAALVE 224
+F + V + + D+ I R++ I + +
Sbjct: 136 QNMFPPISVQHTNINSVKRVLLLNRRDDGYIDLRHFIISTKPVGISR 182
Score = 37.6 bits (87), Expect = 0.20
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
L+EIGPR L LIKI + + GG LY + ++S ++
Sbjct: 259 IKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQ 300
>ref|NP_064615.1| peter pan (Drosophila) homolog; second-step splicing factor 1 [Homo
sapiens]
emb|CAB99252.1| (AJ292529) suppressor of sterile four 1 [Homo sapiens]
Length = 473
Score = 97.2 bits (240), Expect = 2e-19
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 12/182 (6%)
Query: 53 ERVLIFSSRGINFR-TRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIY 110
+F+ RG R R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFT-RGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLI 87
Query: 111 FEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPA 164
+K + ++Y L P GP+ F V+ + ++ S P+L +
Sbjct: 88 L-SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSF 146
Query: 165 FDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAAL 222
L+ + +F + H + + + + FR+Y I
Sbjct: 147 GPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGA 206
Query: 223 VE 224
Sbjct: 207 SR 208
Score = 35.7 bits (82), Expect = 0.80
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanogaster]
Length = 460
Score = 82.4 bits (202), Expect = 8e-15
Identities = 28/176 (15%), Positives = 56/176 (30%), Gaps = 14/176 (7%)
Query: 69 HLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSP 127
L D R +M P + + + R +++ + + + F Q L + P
Sbjct: 44 DLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIFNKASTQ-LSFKVVRLP 102
Query: 128 EGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181
GPS F V ++ +M N P++ + L+ +
Sbjct: 103 RGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNM 162
Query: 182 FGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALVEIGPRFVLNLIK 235
F + + + FS + + R+Y + L R V ++K
Sbjct: 163 FPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLK----RAVQKIVK 214
Score = 38.4 bits (89), Expect = 0.14
Identities = 16/46 (34%), Positives = 21/46 (44%), Gaps = 1/46 (2%)
Query: 219 DAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRL 264
L EIGPR + LIKI +G G LY + H + +R
Sbjct: 267 SIKLHEIGPRLTMQLIKIEEGLLTGEVLY-HDHVVKTEDEKETLRK 311
>gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster]
Length = 460
Score = 80.1 bits (196), Expect = 3e-14
Identities = 28/176 (15%), Positives = 56/176 (30%), Gaps = 14/176 (7%)
Query: 69 HLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSP 127
L D R +M P + + + R +++ + + + F Q L + P
Sbjct: 44 DLTLDFRRIMEPFTASNLREKRMNRIQDFVCLSSFFHVSHMGIFNKASTQ-LSFKVVRLP 102
Query: 128 EGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181
GPS F V ++ +M N P++ + L+ +
Sbjct: 103 RGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNM 162
Query: 182 FGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALVEIGPRFVLNLIK 235
F + + + FS + + R+Y + L R V ++K
Sbjct: 163 FPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLK----RAVQKIVK 214
Score = 38.4 bits (89), Expect = 0.12
Identities = 16/46 (34%), Positives = 21/46 (44%), Gaps = 1/46 (2%)
Query: 219 DAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRL 264
L EIGPR + LIKI +G G LY + H + +R
Sbjct: 267 SIKLHEIGPRLTMQLIKIEEGLLTGEVLY-HDHVVKTEDEKETLRK 311
>pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegans
gb|AAB97575.1| (AF043700) contains similarity to human RNA-binding protein FUS/TLS
(SW:Q28009) [Caenorhabditis elegans]
Length = 608
Score = 70.7 bits (172), Expect = 3e-11
Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 11/176 (6%)
Query: 51 NKERVLIFSSRGINFRTRHLMQDLR-SLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCI 109
+ L+ + + L DLR + P++ K+ +++ + + +
Sbjct: 54 RQPHCLVIHRGDVGKYVKGLESDLRNLVEPNTAKNLKILKRNNIKDFIVNGAVLGVTNMM 113
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDP 163
+ L + + +GP+ F V+ + L S P++ +
Sbjct: 114 VLTSSDAS-LQLRMMRFSQGPTLSFKVKQYSLARHVVNCQKRPVATDKLFKSSPLVVMNG 172
Query: 164 AFD-REPQYALLKELLTQIFGTPRYHPRSQPFVDH--IFTFSIADNRIWFRNYQII 216
D + +L++ + +F + + I ++ + I R++ I
Sbjct: 173 FGDGTQKHLSLVQTFIQNMFPSINVDTIQLGNLKRCLIVSYDEETDEIQMRHFAIR 228
Score = 36.5 bits (84), Expect = 0.43
Identities = 14/29 (48%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L L+KI +G G LY
Sbjct: 338 VRLHEIGPRLTLELVKIEEGIDEGEVLYH 366
>ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae]
sp|P36160|YK61_YEAST HYPOTHETICAL 39.6 KDA PROTEIN IN MTD1-NUP133 INTERGENIC REGION
pir||S38159 hypothetical protein YKR081c - yeast (Saccharomyces cerevisiae)
emb|CAA81632.1| (Z27116) ORF YKR401 [Saccharomyces cerevisiae]
emb|CAA82160.1| (Z28306) ORF YKR081c [Saccharomyces cerevisiae]
Length = 344
Score = 65.7 bits (159), Expect = 8e-10
Identities = 37/196 (18%), Positives = 68/196 (33%), Gaps = 30/196 (15%)
Query: 85 TKMDRKDKLFVVNEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPE---GPSAKFL 135
+ +RK+ + ++ E +C+ + + KK+ M + + +
Sbjct: 58 KRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELM 117
Query: 136 VQ-NIHTLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQP 193
V N L++ K G +P+ +F AFD P Y +K L F +
Sbjct: 118 VADNFKLLSDFKK-LTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVA 176
Query: 194 FVDHIFTFSIADNR--------IWFRNYQI----------IEEDAALVEIGPRFVLNLIK 235
+ H+ + +I + + FR Y++ LVEIGPR + +
Sbjct: 177 GLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGR 236
Query: 236 IFKGSFGGPTLYENPH 251
I S T
Sbjct: 237 IHTPSPDMVTEAHKKP 252
>gb|AAF39738.1|AC005935_5 (AC005935) RNA Binding Protein 1 [Leishmania major]
gb|AAF43468.1|AC012381_4 (AC012381) RNA Binding Protein 1 [Leishmania major]
Length = 374
Score = 60.6 bits (146), Expect = 2e-08
Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 18/212 (8%)
Query: 50 KNKERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDK-LFVVNEVCEMKNCNK 107
K + +I + R LM + R++ P S K+ K+K L V + +
Sbjct: 22 KRTPKSIIIYRGEVGIHVRSLMHEWRNVFLPWS--SKKLHGKNKSLKDFLAVAATFSASH 79
Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAEL---KMSGNCLK----GSRPILS 160
F A + + + GP+ F V + E+ + + PI+
Sbjct: 80 LQLFTAPSQG-TSLRIMRFFNGPTLSFRVLSFTLHKEIVAKQRRPVAVDRAAWEVAPIVV 138
Query: 161 FDPAFDREPQYA----LLKELLTQIFGTPRYHPRSQPFVDHIFTFSI--ADNRIWFRNYQ 214
+ + + LL +F + + I F ++ + R+Y
Sbjct: 139 LNNFTHPDLAHRAEVPLLTATFKALFPSLNVQTIQSSEIQRICLFHYDHVEHVVEVRHYY 198
Query: 215 IIEEDAALVEIGPRFVLNLIKIFKGSFGGPTL 246
I + + + + N G+
Sbjct: 199 INARTVGVTKTVKKLLENRRPTKLGTLESIDE 230
Score = 39.6 bits (92), Expect = 0.057
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 210 FRNYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHY--------QSPNMHRR 260
FR ++ + L EIGPR L L K+ G GG +Y + + + R
Sbjct: 254 FRQHR-EQCRVKLQEIGPRMTLQLSKVENGFAGGEVIY-HRTEKKTLREVQVNASKVRA 310
>gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melanogaster]
Length = 289
Score = 60.2 bits (145), Expect = 4e-08
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 17/140 (12%)
Query: 102 MKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKM--SGNCLKGSR 156
+ + KK+ + L E + ++ ++E K G C+K
Sbjct: 52 KNDAALFTFGSTSKKRPDNIILGRIFENEVLDMFELGIKRYQAISEFKNEKIGACVK--- 108
Query: 157 PILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR-IWFRNYQ 214
P L F+ + + + L+ L F + ++H+ +F++ D+ I R+Y+
Sbjct: 109 PCLVFNGPKWAQTEELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDDMNILMRSYR 168
Query: 215 IIEED-------AALVEIGP 227
I+ + L EIGP
Sbjct: 169 ILLKKSGQRTPRIELEEIGP 188
>gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces cerevisiae
hypothetical protein YKR081c (SP:P36160) [Caenorhabditis
elegans]
Length = 297
Score = 60.2 bits (145), Expect = 4e-08
Identities = 34/201 (16%), Positives = 71/201 (34%), Gaps = 31/201 (15%)
Query: 50 KNKERVLIFSSRGINFR--TRHLMQDLRSLMPHSRAETKMDRKD------KLFVVNEVCE 101
+N ++ L RG H M DL + TKMD+ + +
Sbjct: 25 ENDKKAL--FCRGAKTNEIISHAMMDLFDM--KKPLTTKMDKHNPYHLFEDETPIVRAGS 80
Query: 102 MKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAEL---KMSGNCLKGS 155
+ + + KK+ + + +G A+ + + + + KM+ GS
Sbjct: 81 KFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRITSYKSSSNFEAAKMTL----GS 136
Query: 156 RPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR-IWFRNY 213
+P + + AF+ + + L+ F P+ ++ + F+ D + R Y
Sbjct: 137 KPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRLEGLETVIVFTALDETNLALRVY 196
Query: 214 QIIEED-------AALVEIGP 227
+ + + L E+GP
Sbjct: 197 RPMLKKSATATPRVELAEMGP 217
>emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta]
Length = 186
Score = 54.0 bits (129), Expect = 3e-06
Identities = 33/184 (17%), Positives = 67/184 (35%), Gaps = 17/184 (9%)
Query: 57 IFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKK 116
I +S+ + ++ L+ + R + K K + + KN N IY
Sbjct: 7 ITTSKKPSKTLLKILHLLKKYLITPRYYKR--NKFKFRHLMIYLKRKNINNMIYLFENNN 64
Query: 117 QDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 176
+ ++ + N E KF + N+ + + P + + + +++
Sbjct: 65 R-YFVSIVNFQENIHIKFGINNLLITSRISSIIYKD---YPEIIYLNF--KAQHEIYIQK 118
Query: 177 LLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE----EDAALVEIGPRFVLN 232
+LTQI + S + I+FR+++ I D + EIGPR
Sbjct: 119 VLTQIL-----YQVSPLTNRELLCIYSNKGIIYFRSFRYIFSKNLRDVKIQEIGPRLNFK 173
Query: 233 LIKI 236
++ I
Sbjct: 174 ILNI 177
>pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii
dbj|BAA31023.1| (AP000007) 334aa long hypothetical protein [Pyrococcus horikoshii]
Length = 224
Score = 54.0 bits (129), Expect = 3e-06
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 6/109 (5%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI +S RTR DL ++P+S T+ K + + + + + K
Sbjct: 3 LITTSHRPTRRTRSFGHDLERVIPNSLYLTR--GKKTIQELLMEAYDRGYERLLIINVWK 60
Query: 116 KQDLYMWLSNS-PE--GPSAKFLVQNIHTLAELKMSG-NCLKGSRPILS 160
L M PE G + + E+ G N ++ P++
Sbjct: 61 GNPLKMTFIKVHPEDWGYLGYLYLHGVKLQREMGFKGLNPIREDMPLVI 109
>pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (strain Orsay)
emb|CAB49198.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 224
Score = 53.6 bits (128), Expect = 4e-06
Identities = 26/168 (15%), Positives = 49/168 (28%), Gaps = 24/168 (14%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI +S RTR DL + P+S T+ K + + + + + K
Sbjct: 3 LITTSHRPTRRTRSFGHDLERVFPNSLYMTR--GKKTIQELLMEAYDRGYERLLIINVWK 60
Query: 116 KQDLYMWLSNS-PE--GPSAKFLVQNIHTLAELKMSG-NCLKGSRP------------IL 159
L M P+ G + + E+ G N ++ P L
Sbjct: 61 GNPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHL 120
Query: 160 SFDPAFDREPQYALLKELLTQIFG-TPRYHPRSQPFVDH-----IFTF 201
+F F + + +Y+ ++ + F
Sbjct: 121 AFAQVFSELTTGKFVPRGDKSLLSIADKYNTDVLAVIERHPRGIVVNF 168
>pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (strain K1)
dbj|BAA80440.1| (AP000061) 197aa long hypothetical protein [Aeropyrum pernix]
Length = 197
Score = 52.8 bits (126), Expect = 6e-06
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
R+L+ +SR + R R ++DL + +P + T+ + + ++ ++ +
Sbjct: 15 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSMEELAREAIIRGADRIVVVGE 72
Query: 114 KKKQDLYMWLSNSPEGPS-----AKFLVQNIHTLAE 144
++ + + EGP F+V+ + E
Sbjct: 73 RRGNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRE 107
>emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
emb|CAC23146.1| (AL512964) hypothetical [Sulfolobus solfataricus]
Length = 170
Score = 52.8 bits (126), Expect = 6e-06
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
R++I SSR + RTR+ + L ++P S T+ + + E ++ A
Sbjct: 7 RIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKI--EIFERAINLGALYLLFVLA 64
Query: 114 KKKQDLYMWLSNSPEGPSAK--FLVQNIHTLAELKMSGNCLKGS 155
K L + + + E S K F + + ++ +S N +KG
Sbjct: 65 KNGNPLRIIVYDL-ESLSIKYFFKLSGLSLPSDYNVSLNQIKGH 107
>pir||T39206 hypothetical protein SPAC926.08c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB54156.1| (AL110469) hypothetical protein [Schizosaccharomyces pombe]
Length = 317
Score = 50.5 bits (120), Expect = 3e-05
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 21/158 (13%)
Query: 100 CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKMSGNCLKGSR 156
E + + KK+ + + + N ++ + + G++
Sbjct: 79 SEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVNYKSIQSFSATP-IVPGTK 137
Query: 157 PILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFS---IADNR----- 207
P++ F FD P Y +K L F + ++ S ++
Sbjct: 138 PMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDSAGLSYVIVVSAAEAQEDETKPLP 197
Query: 208 -IWFRNY-------QIIEEDAALVEIGPRFVLNLIKIF 237
+ FR Y + L E+GPR N+ ++
Sbjct: 198 LVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRRVQ 235
>dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~similar to unknown
protein [Arabidopsis thaliana]
Length = 314
Score = 47.0 bits (111), Expect = 3e-04
Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 18/152 (11%)
Query: 100 CEMKNCNKCIYFEAKKKQDLYMWLSNSPE---GPSAKFLVQNIHTLA----ELKMSGNCL 152
+ +C+ +Y KK+ + L + + ++N +L + K + +
Sbjct: 82 SQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVGIENFKSLRAFSYDKKFAPH-- 139
Query: 153 KGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFS-IADNRIWF 210
+G++P + F F+ + LKE+LT +F + +D + S I+ +++
Sbjct: 140 EGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNLTGLDRAYVCSAISPTKVFL 199
Query: 211 RNYQIIEED-------AALVEIGPRFVLNLIK 235
+ + + LVE+GP L + +
Sbjct: 200 THCALKLKKSGSIVPRMELVEVGPSMDLVIRR 231
>dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 179
Score = 38.0 bits (88), Expect = 0.19
Identities = 24/127 (18%), Positives = 44/127 (33%), Gaps = 23/127 (18%)
Query: 130 PSAK--FLVQNIHTLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPR 186
PS F + N+ + + G++P++ F FD P Y +K L F
Sbjct: 14 PSIYKTFNLTNVFIVQATPIVP----GTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEP 69
Query: 187 YHPRSQPFVDHIFTFS---IADNR------IWFRNY-------QIIEEDAALVEIGPRFV 230
+ ++ S ++ + FR Y + L E+GPR
Sbjct: 70 IQKLDSAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRID 129
Query: 231 LNLIKIF 237
N+ ++
Sbjct: 130 FNIRRVQ 136
>sp|O60066|ALKB_SCHPO ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG
pir||T39405 hypothetical protein SPBC13G1.04c - fission yeast
(Schizosaccharomyces pombe)
emb|CAA18657.1| (AL022600) alkB homolog-possible damage repair protein
[Schizosaccharomyces pombe]
Length = 273
Score = 37.6 bits (87), Expect = 0.23
Identities = 30/137 (21%), Positives = 47/137 (33%), Gaps = 16/137 (11%)
Query: 127 PEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE-LLTQIFGTP 185
P P F + + E+K + + +L E Q LLK + TQI
Sbjct: 30 PNDPQ-SFGFEALV---EIKPRVFSFQKAPGLLILKNYVSSELQMQLLKSIMFTQI--QD 83
Query: 186 RYHPRSQ-PFVDHIFTFSIADNRIWFRNYQIIEEDA--ALVEIGPRFVLNLI--KIFKGS 240
+ + PF + ++ IW R Y E L E P V L+ K+ +
Sbjct: 84 PENKTNLSPFYQ----LPLGNDSIWRRYYNGDGESIIDGLGETKPLTVDRLVHKKLRWVT 139
Query: 241 FGGPTLYENPHYQSPNM 257
G + Y P+
Sbjct: 140 LGEQYDWTTKEYPDPSK 156
>gb|AAH00535.1|AAH00535 (BC000535) Unknown (protein for MGC:3007) [Homo sapiens]
Length = 251
Score = 35.3 bits (81), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 61 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 89
>sp|Q58012|Y594_METJA HYPOTHETICAL PROTEIN MJ0594
pir||B64374 hypothetical protein MJ0594 - Methanococcus jannaschii
gb|AAB98595.1| (U67508) M. jannaschii predicted coding region MJ0594
[Methanococcus jannaschii]
Length = 169
Score = 35.3 bits (81), Expect = 1.2
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 57 IFSSRGINFRTRHLMQDL-RSL-MPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAK 114
+ +SR + RTR +DL R+L +P+ + K L + E+ + +
Sbjct: 3 LTTSRKPSQRTRSFARDLERTLNIPYVQ-----RGKLSLKEIFEIDK-----HVLLIGEF 52
Query: 115 KKQDLYMWL 123
K + +
Sbjct: 53 KANPGTLVV 61
>gb|AAF60867.1| (AC024855) Hypothetical protein Y71G10AL.b [Caenorhabditis elegans]
Length = 460
Score = 33.4 bits (76), Expect = 4.7
Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 41/141 (29%)
Query: 29 EQEATAGEEFIVPPPVSEGKWKN-KERVLIFSSRGINF-------------RTRHLMQDL 74
E E V E R+L+ + R + +
Sbjct: 14 EVPNDPESEKEVKEDAKEEVKVRSNPRILLSTRRRPTSVWLSGIPTDFITDTYEQFCETI 73
Query: 75 RSLMPHSRAETKMDRKDKLFVVNEVCEMKNC-----NKCIYFEAKKKQDLYMWLSNSPEG 129
+++M KM K + V+++ + N N + F K +
Sbjct: 74 KNIM-------KMGHKLDVSTVSKIVRIPNLDSNAKNSAMIFHKKTSK------------ 114
Query: 130 PSAKFLVQNIHTLAELKMSGN 150
KFL+ ELKM N
Sbjct: 115 --FKFLMV-FQFKKELKMHRN 132
>pir||F69190 conserved hypothetical protein MTH680 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85185.1| (AE000848) conserved protein [Methanothermobacter
thermautotrophicus]
Length = 155
Score = 33.0 bits (75), Expect = 5.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLM 78
L+ +SR + RTR Q L +M
Sbjct: 2 LLTTSRKPSQRTRSFSQRLSRIM 24
>sp|P35890|DNAA_RHIME CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA
Length = 507
Score = 32.2 bits (73), Expect = 9.5
Identities = 18/106 (16%), Positives = 33/106 (30%), Gaps = 16/106 (15%)
Query: 140 HTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIF 199
H + SG L+G+ L F +F+ + + ELL + + +
Sbjct: 364 HVARNVTASGRELEGAFNQLLFRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVV 423
Query: 200 TFSIA---DNRIWFRNYQIIEEDAALV-------------EIGPRF 229
+ R ++I + + EIG RF
Sbjct: 424 AKHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRRF 469
Searching..................................................done
Results from round 5
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana] 302 3e-81
emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schiz... 297 2e-79
gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175... 288 9e-77
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CH... 282 4e-75
ref|NP_014565.1| Essential nucleolar protein required for biogen... 275 6e-73
gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melan... 272 5e-72
pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment) 270 2e-71
sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHR... 269 4e-71
gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melan... 265 6e-70
dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens] 265 8e-70
emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis tha... 261 1e-68
sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CH... 259 4e-68
pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegan... 258 6e-68
gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar... 256 3e-67
sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN ... 255 6e-67
gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma... 251 6e-66
emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora cra... 246 2e-64
emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipoly... 244 1e-63
ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae] >gi|1730744|sp... 243 3e-63
sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHR... 241 8e-63
pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana ... 236 3e-61
ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae] >gi|731684|sp|... 232 4e-60
gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melano... 232 4e-60
dbj|BAB10077.1| (AB010069) contains similarity to RNA binding pr... 189 4e-47
emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sap... 173 3e-42
ref|NP_064615.1| peter pan (Drosophila) homolog; second-step spl... 163 4e-39
ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens] 162 5e-39
emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapi... 161 2e-38
dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens] 159 6e-38
dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus] 157 2e-37
gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanoga... 153 3e-36
gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster] 152 8e-36
gb|AAF39738.1|AC005935_5 (AC005935) RNA Binding Protein 1 [Leish... 150 3e-35
ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae] >gi|549638|... 147 3e-34
gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumoc... 142 9e-33
pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegan... 141 1e-32
pir||T39008 probable mating protein - fission yeast (Schizosacch... 138 9e-32
ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerev... 137 2e-31
ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyc... 134 1e-30
gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces c... 131 1e-29
gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melano... 126 3e-28
emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta] 124 1e-27
ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens] >g... 123 4e-27
pir||T39206 hypothetical protein SPAC926.08c - fission yeast (S... 119 6e-26
pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (st... 117 2e-25
pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii ... 115 1e-24
emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans] 109 5e-23
dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~simil... 107 2e-22
emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfat... 90 4e-17
pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (str... 85 1e-15
Sequences not found previously or not previously below threshold:
dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizos... 79 9e-14
pir||F69190 conserved hypothetical protein MTH680 - Methanobacte... 42 0.014
sp|Q58012|Y594_METJA HYPOTHETICAL PROTEIN MJ0594 >gi|2128398|pir... 39 0.068
gb|AAH00535.1|AAH00535 (BC000535) Unknown (protein for MGC:3007)... 35 1.3
ref|NP_069935.1| conserved hypothetical protein [Archaeoglobus f... 34 3.6
dbj|BAB17147.1| (AP002868) hypothetical protein~similar to Arabi... 32 9.1
>gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana]
Length = 315
Score = 302 bits (768), Expect = 3e-81
Identities = 119/281 (42%), Positives = 169/281 (59%), Gaps = 14/281 (4%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
M ++ ++ ++ E+ P ++NKE+VL+ S
Sbjct: 1 MGRKRKHSETVTAAPVKDSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTCS 60
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
R INFR RHLM ++ SL+PH + ++K++ + + +NE+ E+K + C++FE +K +DL
Sbjct: 61 RRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDL 120
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
YMW+ SP GPS KFLV +HT+ ELK++GN LKGSRP+L+F F+ + + LLKE+LT
Sbjct: 121 YMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLT 180
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII-------------EEDAALVEIG 226
QIFG P H +S+P+ DH+F FSI D+ IWFRNYQI + L+E+G
Sbjct: 181 QIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVG 240
Query: 227 PRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
PRF LN IKIF GSFGG TLYENP Y SPN R + + A
Sbjct: 241 PRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKA 281
>emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schizosaccharomyces
pombe]
Length = 295
Score = 297 bits (753), Expect = 2e-79
Identities = 125/293 (42%), Positives = 179/293 (60%), Gaps = 16/293 (5%)
Query: 22 KKQLAGSEQEATAGEEFIVPPPVSEGKWKN--------KERVLIFSSRGINFRTRHLMQD 73
+L SE+ +E PV G+ K++VL+ SSRG+ +R RHL+ D
Sbjct: 4 VYKLKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLND 63
Query: 74 LRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAK 133
L S+MPHS+ ++K+D KD+L+ +NE+ E+ NCN +FE+++++DLY+ ++ +P GP+ K
Sbjct: 64 LVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVK 123
Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQP 193
F V+N+HT+ EL M+GN LKGSRPILSFD FD P ++KELL Q FG P+ RS+P
Sbjct: 124 FHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKP 183
Query: 194 FVDHIFTFSIADNRIWFRNYQIIE------EDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
F+D + T +IAD +IWFRNY+I E + L+EIGPRFV+ +I I +GSFGGP +Y
Sbjct: 184 FIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGSFGGPVIY 243
Query: 248 ENPHYQSPNMHRRMIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEAVF 300
+N + S M R IR A + VIP DP + VF
Sbjct: 244 KNDTFVSSTMVRAAIRNQAAQ--RYVNRQESKLERQVRAQQNVIPEDPLDNVF 294
>gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175 [Arabidopsis thaliana]
Length = 320
Score = 288 bits (730), Expect = 9e-77
Identities = 122/287 (42%), Positives = 175/287 (60%), Gaps = 22/287 (7%)
Query: 1 MSAYKRKRGSLPEVATNTKK------AKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKER 54
M ++ + K+ L G + ++ E ++ +KNKE+
Sbjct: 1 MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKS--EGEAEKAKALTSSGFKNKEK 58
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNKCIYFEA 113
VL+ SR I+FR R LM ++ SL+PH + ++K++ + K +NE+ E+KN N C++FE
Sbjct: 59 VLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFEC 118
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+K +DLYMW+ SP GPS KFLV+ +H + E+K++GN LKGSRP+L+F FD++ + L
Sbjct: 119 RKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKL 178
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII-------------EEDA 220
LKE+LTQ+FG P+ H +S+P+ DH+F FSI D IWFRNYQI +
Sbjct: 179 LKEMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKM 238
Query: 221 ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A
Sbjct: 239 TLIEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKA 285
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 282 bits (716), Expect = 4e-75
Identities = 48/271 (17%), Positives = 101/271 (36%), Gaps = 18/271 (6%)
Query: 4 YKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGI 63
++ R +L +K + + G + +++I +SR
Sbjct: 29 REKIRNALENNTKIDYNLRKDAIELAKGSDWGGQQYETDSEYRWAGAQDPKIVITTSRDP 88
Query: 64 NFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWL 123
+ R + ++++ + P+++ + + V + + ++ I F + M +
Sbjct: 89 SSRLKMFAKEMKLIFPNAQRINR--GHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLV 146
Query: 124 SNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFG 183
+ P GP+A F + N+ ++ G + P L FD + +L +F
Sbjct: 147 CHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDNLNSKLGH--RFTTILKHLFP 203
Query: 184 TPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIKIFKGS 240
P +P I TFS +++ I FR++ E + L E GPRF L +I G+
Sbjct: 204 VP------KPDSKRIITFSNSEDYISFRHHVYKTENDGEVELTEAGPRFELKPYQIKLGT 257
Query: 241 FG----GPTLYENPHYQSPNMHRRMIRLATA 267
+ Y + R + ++ A
Sbjct: 258 LETLAAAEDEWVLRSYTNTARKRTFLSISRA 288
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 275 bits (697), Expect = 6e-73
Identities = 124/278 (44%), Positives = 167/278 (59%), Gaps = 14/278 (5%)
Query: 33 TAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDK 92
+ + + ++ NK+R L+ SSRG+N+R RHL+QDL L+PHSR E K+D K
Sbjct: 11 KSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKD 70
Query: 93 LFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCL 152
L +NE+ E+ NCN ++FEA+K QDLY+WLS P GP+ KF +QN+HT+ EL +GNCL
Sbjct: 71 LQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCL 130
Query: 153 KGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN 212
KGSRP+LSFD F+ P Y L+KELL F P +S+PF+DH+ +FSI D++IW R
Sbjct: 131 KGSRPVLSFDQRFESSPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRT 190
Query: 213 YQII------------EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRR 260
Y+I EED +LVEIGPRFV+ +I I +GSFGGP +YEN Y SPN+ R
Sbjct: 191 YEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRA 250
Query: 261 MIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEA 298
I+ A V+ DP
Sbjct: 251 QIKQQAAE--EAKSRAEAAVERKIKRRENVLAADPLSN 286
>gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melanogaster]
Length = 359
Score = 272 bits (690), Expect = 5e-72
Identities = 135/238 (56%), Positives = 180/238 (74%), Gaps = 2/238 (0%)
Query: 31 EATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRK 90
+ +VP + KW NK+RVL+FS+RGI+ R RHLM+D+++LMPH R E+KM+R
Sbjct: 28 PPQRSSDDVVPKKARKEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERS 87
Query: 91 DKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPE--GPSAKFLVQNIHTLAELKMS 148
L VVNE+CEMK+CNK + FE ++K+DLYMW+SN+ GPSAKFL++NIHT+AELKM+
Sbjct: 88 KTLSVVNEMCEMKHCNKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMT 147
Query: 149 GNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRI 208
GNCL+GSRP+LSFD FD P LLKEL Q + P +HP+SQPFVDH+FTF+ D RI
Sbjct: 148 GNCLRGSRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRI 207
Query: 209 WFRNYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
WFRN+QI+ ED L E+GPR+V+N +KIF GSF G T++ENP Y SP+ R++++ A
Sbjct: 208 WFRNFQILSEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKAA 265
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 270 bits (684), Expect = 2e-71
Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 19/260 (7%)
Query: 12 PEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNK--ERVLIFSSRGINFRTRH 69
P T + + + + ++LI +S + RT
Sbjct: 7 PVPKTIDNQRVYDETT-VDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVR 65
Query: 70 LMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEG 129
L + L +++P+S + R L + C ++ I +K + LS+ P G
Sbjct: 66 LCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNG 123
Query: 130 PSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHP 189
P+A F + ++ E+K G P + + R + + +F
Sbjct: 124 PTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGH--SIGRMFASLFPHNP--- 178
Query: 190 RSQPFVDHIFTFSIADNRIWFRNYQIIE---EDAALVEIGPRFVLNLIKIFKGSFG---G 243
Q + TF + I+FR ++ I + + E+GPRF L L + KG+F G
Sbjct: 179 --QFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYG 236
Query: 244 PTLYENPH-YQSPNMHRRMI 262
+ + + + +
Sbjct: 237 EYEWVHKPREMDTSRRKFHL 256
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
pir||S44853 K12H4.3 protein - Caenorhabditis elegans
gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank: CE5D1 (Z14791),
CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
putative [Caenorhabditis elegans]
Length = 352
Score = 269 bits (681), Expect = 4e-71
Identities = 125/264 (47%), Positives = 184/264 (69%), Gaps = 4/264 (1%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSR 61
SA+++ ++ + ++ + E W N+ERVL+ SR
Sbjct: 15 SAHQKMEWEAAGAKDSSSDDSSDESDNDDQPKQATEET---RKRAELWTNRERVLVLCSR 71
Query: 62 GINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYM 121
G + RTR+LM+D++ L+PH++ ++K+D++ L V+NE+ EMKNC K +YFE++K++D Y+
Sbjct: 72 GADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKVMYFESRKRKDTYL 131
Query: 122 WLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181
W+SN +GPS KFLV N+HT+ ELKMSGNCL+ SRP+LSFD AFD++PQ L+K +L Q
Sbjct: 132 WMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQT 191
Query: 182 FGTPRYHPRSQPFVDHIFTFSIAD-NRIWFRNYQIIEEDAALVEIGPRFVLNLIKIFKGS 240
GTP +HPRSQPFVDH+F FS+ + ++IWFRN+QI++E L E+GPRFVL ++++F GS
Sbjct: 192 LGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGPRFVLEMVRLFAGS 251
Query: 241 FGGPTLYENPHYQSPNMHRRMIRL 264
F G LY+NP+Y SPN+ RR R
Sbjct: 252 FEGAVLYDNPNYVSPNVIRREHRK 275
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 265 bits (671), Expect = 6e-70
Identities = 49/260 (18%), Positives = 104/260 (39%), Gaps = 20/260 (7%)
Query: 9 GSLPEVATNTKKAKKQLAG---SEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINF 65
S+ E K K+ S + A G + ++++ +S +
Sbjct: 34 KSINENKAIGSKNVKKSLTAYKSLKYADEGVDDRTVNDEYHYAGCEDPKIMLTTSHNPSS 93
Query: 66 RTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSN 125
R + M++LR ++P+++ + + +L + C N + + + + +
Sbjct: 94 RLKMFMKELRLIIPNAQQMNRGN--YQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCH 151
Query: 126 SPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTP 185
P GP+A F + ++ ++ G + +P L F+ F +K +L +F P
Sbjct: 152 LPYGPTAFFNISDVVMRHDIPDIG-HMSEQKPHLIFNN-FKTPIGLRTVK-ILKHLFPVP 208
Query: 186 RYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE--EDAALVEIGPRFVLNLIKIFKGSFG- 242
+ + + +F ++ I FR++Q ++ L E+GPRF L L +I G+
Sbjct: 209 KENS------QRVMSFLNHNDSIIFRHHQYKYVNKELELTEVGPRFSLKLYQIKLGTLEN 262
Query: 243 ---GPTLYENPHYQSPNMHR 259
T + N Y + + R
Sbjct: 263 IKAADTEWINRPYMNTSQKR 282
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 265 bits (671), Expect = 8e-70
Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 29/281 (10%)
Query: 1 MSAYKRKRGSL----------PEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWK 50
++A K+ + P T + + +
Sbjct: 79 LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETT-VDPNDEEVAYDEATDEFASYFN 137
Query: 51 NK--ERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKC 108
+ ++LI +S + RT L + L +++P+S + R L + C ++
Sbjct: 138 KQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDL 195
Query: 109 IYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDRE 168
I +K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 196 IVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRL 255
Query: 169 PQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE---EDAALVEI 225
+ + +F Q + TF + I+FR ++ I + + E+
Sbjct: 256 GH--SIGRMFASLFPHNP-----QFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQEL 308
Query: 226 GPRFVLNLIKIFKGSFG---GPTLYENPH-YQSPNMHRRMI 262
GPRF L L + KG+F G + + + + +
Sbjct: 309 GPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
Length = 343
Score = 261 bits (661), Expect = 1e-68
Identities = 52/285 (18%), Positives = 98/285 (34%), Gaps = 35/285 (12%)
Query: 3 AYKRKRGSLPEVATNTKKAKKQLAGSEQE-----ATAGEEFIVPP-PVSEGKWKNK--ER 54
A +++ L E K E + E F + + +
Sbjct: 69 AAEKRALELGEEPPQKMIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPK 128
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAK 114
VL+ + R + R L+ +L S++P+S + + L + E K+ I
Sbjct: 129 VLLTTCRFNSTRGPALISELLSVIPNSHYQKR--GTYDLKKIVEYATKKDFTSLIVVHTN 186
Query: 115 KKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALL 174
+++ + + P GP+A F + N+ ++K GN +P L + R +
Sbjct: 187 RREPDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNPTS-HQPELVLNNFTTRLGN--RV 243
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAA------------- 221
+F + TF + I+FR+++ I E
Sbjct: 244 GRFFQSLFPPDPNFR-----GRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKP 298
Query: 222 -LVEIGPRFVLNLIKIFKGSFG---GPTLYENPHYQSPNMHRRMI 262
L E GPRF L L+ + G+F G + + + R +
Sbjct: 299 RLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
Length = 754
Score = 259 bits (656), Expect = 4e-68
Identities = 53/295 (17%), Positives = 102/295 (33%), Gaps = 43/295 (14%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEAT------AGEEFIVPPPVSEGKWKNK--E 53
+ R L E A + K + E +AT E + +
Sbjct: 469 GERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSP 528
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
+V+I + T +L+ +P+S T+ + L + E + + +
Sbjct: 529 KVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL--LKTIIEQAKEREFTDLLVVHE 586
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLK------------GS 155
+K+ + + PEGP+A F + ++ +LK+ CLK
Sbjct: 587 DRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGESTSH 646
Query: 156 RPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P + + R + +L +F + + TF + I+FR+++
Sbjct: 647 FPEVILNNFNTRLGH--NIARMLACLFPHDP-----KFTGRRVVTFHNQRDYIFFRHHRY 699
Query: 216 IEEDAA----LVEIGPRFVLNLIKIFKGSFG---GPTLYENP-HYQSPNMHRRMI 262
+ L+E+GPRF L L + KG+F G + H + R +
Sbjct: 700 EFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 754
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
Length = 746
Score = 258 bits (655), Expect = 6e-68
Identities = 53/295 (17%), Positives = 102/295 (33%), Gaps = 43/295 (14%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEAT------AGEEFIVPPPVSEGKWKNK--E 53
+ R L E A + K + E +AT E + +
Sbjct: 461 GERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSP 520
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
+V+I + T +L+ +P+S T+ + L + E + + +
Sbjct: 521 KVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL--LKTIIEQAKEREFTDLLVVHE 578
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLK------------GS 155
+K+ + + PEGP+A F + ++ +LK+ CLK
Sbjct: 579 DRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGESTSH 638
Query: 156 RPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P + + R + +L +F + + TF + I+FR+++
Sbjct: 639 FPEVILNNFNTRLGH--NIARMLACLFPHDP-----KFTGRRVVTFHNQRDYIFFRHHRY 691
Query: 216 IEEDAA----LVEIGPRFVLNLIKIFKGSFG---GPTLYENP-HYQSPNMHRRMI 262
+ L+E+GPRF L L + KG+F G + H + R +
Sbjct: 692 EFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 746
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
1537-3735 [Arabidopsis thaliana]
gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
73469-75667 [Arabidopsis thaliana]
Length = 294
Score = 256 bits (649), Expect = 3e-67
Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 27/276 (9%)
Query: 3 AYKRKRGSLPEVATNTKKAK------KQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVL 56
+ R +L E + + +Q E + TA + ++L
Sbjct: 28 QKRLIREALQEGKPIPTELRNVEAKLRQEIDLEDQNTA-VPRSHIDDEYANATEADPKIL 86
Query: 57 IFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKK 116
+ +SR + ++L+ + P+S+ + + + E + I +
Sbjct: 87 LTTSRNPSAPLIRFTKELKFVFPNSQRINR--GSQVISEIIETARSHDFTDVILVHEHRG 144
Query: 117 QDLYMWLSNSPEGPSAKFLVQNIHTLAEL--KMSGNCLKGSRPILSFDPAFDREPQYALL 174
+ +S+ P GP+A F + N+ T ++ K S + P L F+ + Q +
Sbjct: 145 VPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIGKMPEQYPHLIFNNFTTQMGQ--RV 202
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII-----EEDAALVEIGPRF 229
+L IF P+ I TFS + I FRN+ + L EIGPRF
Sbjct: 203 GNILKHIFPAPKLDA------KRIVTFSNQSDYISFRNHVYDKGEGGPKSIELKEIGPRF 256
Query: 230 VLNLIKIFKGSF---GGPTLYENPHYQSPNMHRRMI 262
L L ++ G+ + Y + + R+ I
Sbjct: 257 ELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
Length = 289
Score = 255 bits (646), Expect = 6e-67
Identities = 48/263 (18%), Positives = 99/263 (37%), Gaps = 24/263 (9%)
Query: 4 YKRKRGSLPEVATN------TKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLI 57
+ R +L + +K E AT E + + +VL+
Sbjct: 29 RRALRKALEGNKELNKDLQEDSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLV 88
Query: 58 FSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFEAKKK 116
+SR + R +++R L+P+S +++R + + + E + + +
Sbjct: 89 TTSREPSSRLAQFAKEVRLLIPNS---YRLNRGNIVVGSLVEAARANDITDIVILHEHRG 145
Query: 117 QDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 176
+ +S+ P GP+ F + N+ ++ +G + + P L F+ + +K
Sbjct: 146 IPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGT-MSEAYPHLIFENLTSKLG--KRVKT 202
Query: 177 LLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII---EEDAALVEIGPRFVLNL 233
L+ +F + TF+ D+ I FR++ + L E GPRF + L
Sbjct: 203 ALSALFPPDPKDTTP-----RVVTFANTDDYISFRHHIYAKTGPKQIILSEAGPRFEMKL 257
Query: 234 IKIFKGS---FGGPTLYENPHYQ 253
+I G+ ++ YQ
Sbjct: 258 FEITLGTVDMVDADVEWKLKPYQ 280
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
Length = 287
Score = 251 bits (637), Expect = 6e-66
Identities = 41/273 (15%), Positives = 101/273 (36%), Gaps = 24/273 (8%)
Query: 2 SAYKRKRGSLPEVAT------NTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERV 55
+ ++ R ++ K+ + + T + RV
Sbjct: 27 ARKEQFREAVSNATPLPGHLHKDALRLKKFTELDDDQTRTLQ-TSVDDEYANAGVEDPRV 85
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
L+ +SR + + +++R ++P + + + + + + + + + +
Sbjct: 86 LVTTSREPSQKLLEFAKEIRLVIPSAVRMNRGN--LSVRQLMDAARRGQYSDVVVLQESQ 143
Query: 116 KQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLK 175
+ +S+ P GP+ F + N+ T +++ G + P L F+ R ++
Sbjct: 144 GVPDSLTVSHLPLGPTVVFTIHNLVTRHDIQDVGT-MSEQHPHLIFENFTTRLG--RRVR 200
Query: 176 ELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE---EDAALVEIGPRFVLN 232
++L +F P +P + TF ++ + FR++ + L E+GPR +
Sbjct: 201 DVLKFLFPVP------KPRPTRVLTFDNQNDFVSFRHHTFRAVKGREVQLTEVGPRMDVA 254
Query: 233 LIKIFKGSF---GGPTLYENPHYQSPNMHRRMI 262
+I G+ T + Y + RR++
Sbjct: 255 PYRITLGTLEMDDAETEWVLQPYMNTAKKRRLL 287
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 246 bits (624), Expect = 2e-64
Identities = 48/269 (17%), Positives = 99/269 (35%), Gaps = 18/269 (6%)
Query: 4 YKRKRGSLPEVATNTK---KAKKQLAGSEQEATAGE--EFIVPPPVSEGK-WKNKERVLI 57
+ R +L K K+ + + + + I R+L+
Sbjct: 29 RAKLRSALASGKPLDPEIAKDKELRKDFDYDVSRDVNGDAIDIDDEYSELSGVIDPRILV 88
Query: 58 FSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQ 117
+SR + R +++R L+P S + + L + + +N + +
Sbjct: 89 TTSRDPSSRLGQFSKEIRLLLPTSVRLNRGN--LVLEDLVGAAKAQNLTDVVLLHEHRGV 146
Query: 118 DLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN-CLKGSRPILSFDPAFDREPQYALLKE 176
M +S+ P GP+ + N+ A++ S + S P L F+ + + + +
Sbjct: 147 PTAMTISHFPHGPTLMVSLHNVVLRADIPKSIKGTVSESYPRLIFEGFSTKLGE--RVVK 204
Query: 177 LLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII---EEDAALVEIGPRFVLNL 233
+L +F PR + + + TF D+ I R++ + + L E+GPRF +
Sbjct: 205 ILKHLFP-PREPTQKPNVGNRVITFVNNDDTIEVRHHVYVRTSYDSVELSEVGPRFTMKP 263
Query: 234 IKIFKGSF---GGPTLYENPHYQSPNMHR 259
KI G+ T + Y + +
Sbjct: 264 FKITMGTLDNKDADTEWHLSQYTRTSRKK 292
>emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipolytica]
Length = 333
Score = 244 bits (619), Expect = 1e-63
Identities = 44/261 (16%), Positives = 90/261 (33%), Gaps = 19/261 (7%)
Query: 5 KRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGIN 64
K KR + T K + E + +VLI +S+
Sbjct: 89 KEKRLAENVPDTIEAKRVYDETIA-----QEMEGEDEFKEYFEEG-KPPKVLITTSKRAR 142
Query: 65 FRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLS 124
+ L ++P S + ++ + + ++C ++ + KK+ +
Sbjct: 143 GQAYDFADLLYDIIPGSEFKKRV-GDFTMTQIAKMCAERDYTDLVVINEDKKKVNGLTFI 201
Query: 125 NSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGT 184
+ PEGP+ F V ++ E+K G P L + R + L +F
Sbjct: 202 HLPEGPTMYFSVSSLKMPKEIKGHGRSTT-HIPELILNNFSTRLG--KTVGRLFQSMFPQ 258
Query: 185 PRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIKIFKGSF 241
+ T + I+FR ++ + + L E+GP+F L L ++ +G
Sbjct: 259 QPE-----FVGRQVVTLHNQRDWIFFRRHRYVFKNEERVGLQELGPQFTLRLRRLQRGI- 312
Query: 242 GGPTLYENPHYQSPNMHRRMI 262
G +E+ + + +
Sbjct: 313 RGEVEWEHRSAMDKDKKKFHL 333
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
Length = 290
Score = 243 bits (615), Expect = 3e-63
Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 28/272 (10%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGK-WKNKERVLIFS 59
++ K L E + K + + E + + R+++ +
Sbjct: 36 LAQGKPLPKELAEDESLQKDFRYDQSLKES---EEADDLQVDDEYAATSGIMDPRIIVTT 92
Query: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
SR + R ++++ L P++ + + + + + C+ + +
Sbjct: 93 SRDPSTRLSQFAKEIKLLFPNAVRLNRGN--YVMPNLVDACKKSGTTDLVVLHEHRGVPT 150
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
+ +S+ P GP+A+F + N+ ++ +GN P L FD + +L
Sbjct: 151 SLTISHFPHGPTAQFSLHNVVMRHDIINAGNQ-SEVNPHLIFDNFTTALG--KRVVCILK 207
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII--EEDAALVEIGPRFVLNLIKIF 237
+F + + + TF+ + I R + + E + E+GPRF + L ++
Sbjct: 208 HLFNAGP-----KKDSERVITFANRGDFISVRQHVYVRTREGVEIAEVGPRFEMRLFELR 262
Query: 238 KGSF---GGPTLYENPHYQSPNMHRRMIRLAT 266
G+ + RR IR A
Sbjct: 263 LGTLENKDADVEW---------QLRRFIRTAN 285
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
pir||T38834 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
Length = 306
Score = 241 bits (611), Expect = 8e-63
Identities = 44/275 (16%), Positives = 92/275 (33%), Gaps = 24/275 (8%)
Query: 3 AYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNK---ERVLIFS 59
KR R S AT K E + + + + + ++L+ +
Sbjct: 41 EKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTT 100
Query: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
S+ + + +L P++ + ++ + E + + +K+
Sbjct: 101 SKRASRKCYDFASELLDCFPNAEFRKR-TGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTN 159
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
+ L + P GPS F + N+ T E+ G G P L + R +
Sbjct: 160 ALTLVHLPNGPSFYFTLSNLQTAKEISNHGRST-GHIPELIINNFSTRLG--MTVARAFQ 216
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDA---------ALVEIGPRFV 230
+F Q + T + ++FR ++ + L E+GPRF
Sbjct: 217 SLFIQTP-----QIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQELGPRFT 271
Query: 231 LNLIKIFKGSFG---GPTLYENPHYQSPNMHRRMI 262
+ L + KG + G +E+ + + + +
Sbjct: 272 MRLRMVQKGVWDRKEGEVFFESNAGEESDRRKFWL 306
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
F44G4.1 (GB:Z49910) and several yeast hypothetical
proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
region (SP:P38805) [Arabidopsis thaliana]
Length = 434
Score = 236 bits (597), Expect = 3e-61
Identities = 51/302 (16%), Positives = 96/302 (30%), Gaps = 58/302 (19%)
Query: 3 AYKRKRGSLPEV-------------ATNTKKAKKQLAGSEQE-----ATAGEEFIVPP-P 43
A +++ L E K E + E F
Sbjct: 69 AAEKRALELGEEVTIWRSFFRDFLKPPQKMIPKTIENTRESDETVCRPDDEELFADIDAD 128
Query: 44 VSEGKWKNK--ERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCE 101
+ + +VL+ + R + R L+ +L S++P+S + + L + E
Sbjct: 129 EFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHYQKR--GTYDLKKIVEYAT 186
Query: 102 MKNCNKCIYFEAKKKQD-------LYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKG 154
K+ I +++ + + P GP+A F + N+ ++K GN
Sbjct: 187 KKDFTSLIVVHTNRREPAFAISYVDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNPTS- 245
Query: 155 SRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQ 214
+P L + R + +F + TF + I+FR+++
Sbjct: 246 HQPELVLNNFTTRLGN--RVGRFFQSLFPPDPNFR-----GRRVVTFHNQRDFIFFRHHR 298
Query: 215 IIEEDAA--------------LVEIGPRFVLNLIKIFKGSFG---GPTLYENP---HYQS 254
I E L E GPRF L L+ + G+F G + +
Sbjct: 299 YIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKVKSPEMD 358
Query: 255 PN 256
+
Sbjct: 359 TS 360
>ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae]
sp|P38805|YHO8_YEAST HYPOTHETICAL 35.1 KDA PROTEIN IN NAM8-GAR1 INTERGENIC REGION
pir||S46718 hypothetical protein YHR088w - yeast (Saccharomyces cerevisiae)
gb|AAB68926.1| (U00060) Yhr088wp [Saccharomyces cerevisiae]
Length = 295
Score = 232 bits (588), Expect = 4e-60
Identities = 38/272 (13%), Positives = 85/272 (30%), Gaps = 23/272 (8%)
Query: 4 YKRKRGSLPEVAT------NTKKAKKQLAGSEQEAT----AGEEFIVPPPVSEGKWKNKE 53
+++ E + + T +
Sbjct: 34 RRKRAKEERENPELREQRLKENVTQTIENTRVYDETINKEVEGDEDDLMRYFNSNSNEPP 93
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
++ + ++ L ++P+ K KL ++++C +N +
Sbjct: 94 KIFLTTNVNAKKSAYEFANILIEILPN-VTFVKRKFGYKLKEISDICIKRNFTDIVIINE 152
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
KK+ + + PEGP+ F + + + ++ G P L + R Q
Sbjct: 153 DKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTS-HIPELILNNFQTRLGQ--T 209
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEED---AALVEIGPRFV 230
+ L I + T + I+FR ++ + +D L E+GP+F
Sbjct: 210 VGRLFQSILPQNPD-----IEGRQVITLHNQRDYIFFRRHRYVFKDNERVGLQELGPQFT 264
Query: 231 LNLIKIFKGSFGGPTLYENPHYQSPNMHRRMI 262
L L ++ +G T +E+ + +
Sbjct: 265 LKLKRLQRGIKE-ETEWEHKPEMDKEKKKFYL 295
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
Length = 394
Score = 232 bits (588), Expect = 4e-60
Identities = 46/277 (16%), Positives = 103/277 (36%), Gaps = 27/277 (9%)
Query: 3 AYKRKRGSLPEVA--TNTKKAKKQLAG--SEQEATAGE-EFIVPPPVSEGKWKN--KERV 55
R++ +P T +K + ++ E + + ++ + +V
Sbjct: 128 RRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKV 187
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI + +TR +L + P++ K+ K + + + E + + +
Sbjct: 188 LITFADNPVTKTRKFGLELSRIFPNA--LVKIRNKSSVKKICKSAEREEFTDVVIVNEDR 245
Query: 116 KQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLK 175
++ + + + P GP+A F + N+ +++K + RP + + R +
Sbjct: 246 RKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLG--LTVG 303
Query: 176 ELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE----EDAALVEIGPRFVL 231
+L +F H + TF + I+FR+++ + L E+GPRF L
Sbjct: 304 RMLGALF-----HHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTL 358
Query: 232 NLIKIFKGSFG---GPTLYE---NPHYQSPNMHRRMI 262
L + +G+F G + H + R +
Sbjct: 359 KLRSLQEGTFDSKTGDYAWIISNKRHAME-SRRRFFL 394
>dbj|BAB10077.1| (AB010069) contains similarity to RNA binding
protein~gene_id:MAC9.8 [Arabidopsis thaliana]
Length = 346
Score = 189 bits (477), Expect = 4e-47
Identities = 39/251 (15%), Positives = 77/251 (30%), Gaps = 34/251 (13%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
M +K + S KK VS + +FS
Sbjct: 1 MGRFKNNKKSRVIGKPIAKK-------------------NQEDVSHVTGDKIPKSFVFSR 41
Query: 61 RGINFRTRHLMQDLR-SLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
+ + L DLR ++P++ K +++ L V + +K L
Sbjct: 42 MKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLML-SKTASSL 100
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAFDREPQYAL 173
+ ++ +P+GP+ F + +++ L S P++ +E L
Sbjct: 101 SLRVARTPQGPTLTFKIHQYSLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKL 160
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALVEIGPRFVL 231
+ IF + + + + I FR+Y I + + +FV
Sbjct: 161 ATIMFQNIFPAIDINTVKLSTCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQ 220
Query: 232 N-----LIKIF 237
N L +
Sbjct: 221 NHQVPDLRNLQ 231
Score = 32.2 bits (73), Expect = 9.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 220 AALVEIGPRFVLNLIKIFKG 239
L EIGPR + L+K+ +G
Sbjct: 273 VKLQEIGPRMTMQLVKVEEG 292
>emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sapiens]
Length = 794
Score = 173 bits (436), Expect = 3e-42
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 12/182 (6%)
Query: 53 ERVLIFSSRGINFR-TRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIY 110
+F+ RG R R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFT-RGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLI 87
Query: 111 FEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPA 164
+K + ++Y L P GP+ F V+ + ++ S P+L +
Sbjct: 88 L-SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSF 146
Query: 165 FDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN--RIWFRNYQIIEEDAAL 222
L+ + +F + H + + + + FR+Y I
Sbjct: 147 GPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGA 206
Query: 223 VE 224
Sbjct: 207 SR 208
Score = 37.2 bits (86), Expect = 0.28
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>ref|NP_064615.1| peter pan (Drosophila) homolog; second-step splicing factor 1 [Homo
sapiens]
emb|CAB99252.1| (AJ292529) suppressor of sterile four 1 [Homo sapiens]
Length = 473
Score = 163 bits (409), Expect = 4e-39
Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 10/181 (5%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+F+ R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPAF 165
+K + ++Y L P GP+ F V+ + ++ S P+L +
Sbjct: 89 -SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFG 147
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN--RIWFRNYQIIEEDAALV 223
L+ + +F + H + + + + FR+Y I
Sbjct: 148 PHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGAS 207
Query: 224 E 224
Sbjct: 208 R 208
Score = 35.3 bits (81), Expect = 1.00
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens]
Length = 473
Score = 162 bits (408), Expect = 5e-39
Identities = 28/181 (15%), Positives = 58/181 (31%), Gaps = 10/181 (5%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+F+ R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPAF 165
+K + ++Y L P GP+ F V + ++ S P+L +
Sbjct: 89 -SKTETNVYFKLMRLPGGPTLTFQVLQYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFG 147
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN--RIWFRNYQIIEEDAALV 223
L+ + +F + H + + + + FR+Y I
Sbjct: 148 PHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGAS 207
Query: 224 E 224
Sbjct: 208 R 208
Score = 35.7 bits (82), Expect = 0.92
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 161 bits (404), Expect = 2e-38
Identities = 43/222 (19%), Positives = 89/222 (39%), Gaps = 29/222 (13%)
Query: 50 KNKERVLIFSSRGINFRTRHLMQD---LRSLMPHSRAETKMDRKDKLFVVNE------VC 100
+N + ++ N +++D L+ P+ K K+ + +
Sbjct: 17 ENIKNAMLIKGGNANATVTQVLKDVCALKK--PYGVLYKK---KNVTRPFEDQTSLELLS 71
Query: 101 EMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKMSGNCLKGSRP 157
+ +C+ ++ KK+ + + + + + ++N +L ++K S C +G++P
Sbjct: 72 KKSDCSLFMFGSYNKKRPNNLVIGHMYDYHVLDMIELGIENFVSLKDIKNS-KCPEGTKP 130
Query: 158 ILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII 216
+L F F+ Y LK LLT F P ++++ F+ + +I+FR Y+++
Sbjct: 131 MLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAGLEYVLHFTALNGKIYFRRYKLL 190
Query: 217 EED-------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPH 251
+ L EIGP L L + S LY
Sbjct: 191 LKKSGCRTPRIELEEIGPSLNLVLRRTHLAS---DDLYTLSM 229
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 159 bits (399), Expect = 6e-38
Identities = 42/220 (19%), Positives = 89/220 (40%), Gaps = 25/220 (11%)
Query: 50 KNKERVLIFSSRGINFRTRHLMQDLRSL-MPHSRAETKMDRKDKLFVVNEV------CEM 102
+N + ++ N +++D+ +L P+ K K+ + +
Sbjct: 28 ENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK---KNITRPFEDQTSLEFFSKK 84
Query: 103 KNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKMSGNCLKGSRPIL 159
+C+ ++ KK+ + + + + ++N +L ++K S C +G++P+L
Sbjct: 85 SDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNS-KCPEGTKPML 143
Query: 160 SFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE 218
F FD Y LK LL F P ++++ F+ + +I+FR+Y+++ +
Sbjct: 144 IFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKLLLK 203
Query: 219 D-------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPH 251
L E+GP L L + S LY+
Sbjct: 204 KSGCRTPRIELEEMGPSLDLVLRRTHLAS---DDLYKLSM 240
>dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus]
Length = 306
Score = 157 bits (394), Expect = 2e-37
Identities = 39/262 (14%), Positives = 93/262 (34%), Gaps = 28/262 (10%)
Query: 24 QLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSL-MPHSR 82
++ +N + ++ N +++D+ +L P+
Sbjct: 2 DALDKVRKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGV 61
Query: 83 AETKMDRKDKLFVVNEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAK 133
K K+ + + +C+ ++ KK+ + + + +
Sbjct: 62 LYKK---KNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIE 118
Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQ 192
++ +L ++K + C +G++P+L F FD + LK LL F P
Sbjct: 119 LGIEKFVSLKDIK-TSKCPEGTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRL 177
Query: 193 PFVDHIFTFSIADNRIWFRNYQIIEED-------AALVEIGPRFVLNLIKIFKGSFGGPT 245
++++ F+ + +++FR+Y+++ + L E+GP L + + S
Sbjct: 178 AGLEYVLHFTALNGKVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLAS---DD 234
Query: 246 LYENPHYQSPN---MHRRMIRL 264
LY+ R+ I
Sbjct: 235 LYKLSMKVPKALKPKKRKNISQ 256
>gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanogaster]
Length = 460
Score = 153 bits (384), Expect = 3e-36
Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 14/192 (7%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+ L D R +M P + + + R +++ + + + F
Sbjct: 28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAF 165
Q L + P GPS F V ++ +M N P++ +
Sbjct: 88 NKASTQ-LSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFS 146
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALV 223
L+ +F + + + FS + + R+Y + L
Sbjct: 147 GDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLK 206
Query: 224 EIGPRFVLNLIK 235
R V ++K
Sbjct: 207 ----RAVQKIVK 214
Score = 36.5 bits (84), Expect = 0.48
Identities = 14/29 (48%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR + LIKI +G G LY
Sbjct: 268 IKLHEIGPRLTMQLIKIEEGLLTGEVLYH 296
>gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster]
Length = 460
Score = 152 bits (381), Expect = 8e-36
Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 14/192 (7%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+ L D R +M P + + + R +++ + + + F
Sbjct: 28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIQDFVCLSSFFHVSHMGIF 87
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAF 165
Q L + P GPS F V ++ +M N P++ +
Sbjct: 88 NKASTQ-LSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFS 146
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALV 223
L+ +F + + + FS + + R+Y + L
Sbjct: 147 GDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLK 206
Query: 224 EIGPRFVLNLIK 235
R V ++K
Sbjct: 207 ----RAVQKIVK 214
Score = 36.8 bits (85), Expect = 0.41
Identities = 14/29 (48%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR + LIKI +G G LY
Sbjct: 268 IKLHEIGPRLTMQLIKIEEGLLTGEVLYH 296
>gb|AAF39738.1|AC005935_5 (AC005935) RNA Binding Protein 1 [Leishmania major]
gb|AAF43468.1|AC012381_4 (AC012381) RNA Binding Protein 1 [Leishmania major]
Length = 374
Score = 150 bits (376), Expect = 3e-35
Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 18/212 (8%)
Query: 50 KNKERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDK-LFVVNEVCEMKNCNK 107
K + +I + R LM + R++ P S K+ K+K L V + +
Sbjct: 22 KRTPKSIIIYRGEVGIHVRSLMHEWRNVFLPWS--SKKLHGKNKSLKDFLAVAATFSASH 79
Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLK-------GSRPILS 160
F A + + + GP+ F V + E+ PI+
Sbjct: 80 LQLFTAPSQG-TSLRIMRFFNGPTLSFRVLSFTLHKEIVAKQRRPVAVDRAAWEVAPIVV 138
Query: 161 FDPAFDREPQYA----LLKELLTQIFGTPRYHPRSQPFVDHIFTFSI--ADNRIWFRNYQ 214
+ + + LL +F + + I F ++ + R+Y
Sbjct: 139 LNNFTHPDLAHRAEVPLLTATFKALFPSLNVQTIQSSEIQRICLFHYDHVEHVVEVRHYY 198
Query: 215 IIEEDAALVEIGPRFVLNLIKIFKGSFGGPTL 246
I + + + + N G+
Sbjct: 199 INARTVGVTKTVKKLLENRRPTKLGTLESIDE 230
Score = 37.6 bits (87), Expect = 0.22
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 210 FRNYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
FR ++ L EIGPR L L K+ G GG +Y
Sbjct: 254 FRQHREQCR-VKLQEIGPRMTLQLSKVENGFAGGEVIYH 291
>ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae]
sp|P36160|YK61_YEAST HYPOTHETICAL 39.6 KDA PROTEIN IN MTD1-NUP133 INTERGENIC REGION
pir||S38159 hypothetical protein YKR081c - yeast (Saccharomyces cerevisiae)
emb|CAA81632.1| (Z27116) ORF YKR401 [Saccharomyces cerevisiae]
emb|CAA82160.1| (Z28306) ORF YKR081c [Saccharomyces cerevisiae]
Length = 344
Score = 147 bits (368), Expect = 3e-34
Identities = 43/228 (18%), Positives = 78/228 (33%), Gaps = 32/228 (14%)
Query: 63 INFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEV------CEMKNCNKCIYFEAKKK 116
N +M DL +L + +RK+ + ++ E +C+ + + KK
Sbjct: 38 CNKNLHDIMVDLSAL--KKPDMKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKK 95
Query: 117 QDLYMWLSNSPE---GPSAKFLVQ-NIHTLAELKMSGNCLKGSRPILSFDP-AFDREPQY 171
+ M + + +V N L++ K G +P+ +F AFD P Y
Sbjct: 96 RKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFKK-LTFTVGLKPMFTFQGAAFDTHPVY 154
Query: 172 ALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--------IWFRNYQI-------- 215
+K L F + + H+ + +I + + FR Y++
Sbjct: 155 KQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQG 214
Query: 216 --IEEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
LVEIGPR + +I S T Q ++
Sbjct: 215 GKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKN 262
>gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumocystis carinii f. sp.
carinii]
Length = 277
Score = 142 bits (355), Expect = 9e-33
Identities = 27/151 (17%), Positives = 55/151 (35%), Gaps = 14/151 (9%)
Query: 119 LYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELL 178
+ + + P GPS F + +I + + G P L + ++ +
Sbjct: 135 DSLIIIHLPSGPSFYFTISSITPTSCIYRHGRATS-HIPELIINNFTTYLG--LTVENMF 191
Query: 179 TQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIK 235
+F ++ + T + I+ R ++ I + +L E+GPRF L L +
Sbjct: 192 RSLFP-----TQADFEGRQVVTIHNQRDFIFIRRHRYIFKNDIKVSLQELGPRFTLKLRR 246
Query: 236 IFKGSFG---GPTLYENPHYQSPNMHRRMIR 263
+ +G +YE + N R +
Sbjct: 247 LQRGIHDRHADNVVYEYKPGEESNRTRFWLS 277
>pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegans
gb|AAB97575.1| (AF043700) contains similarity to human RNA-binding protein FUS/TLS
(SW:Q28009) [Caenorhabditis elegans]
Length = 608
Score = 141 bits (353), Expect = 1e-32
Identities = 23/182 (12%), Positives = 61/182 (32%), Gaps = 11/182 (6%)
Query: 51 NKERVLIFSSRGINFRTRHLMQDLR-SLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCI 109
+ L+ + + L DLR + P++ K+ +++ + + +
Sbjct: 54 RQPHCLVIHRGDVGKYVKGLESDLRNLVEPNTAKNLKILKRNNIKDFIVNGAVLGVTNMM 113
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDP 163
+ L + + +GP+ F V+ + L S P++ +
Sbjct: 114 VLTSSDAS-LQLRMMRFSQGPTLSFKVKQYSLARHVVNCQKRPVATDKLFKSSPLVVMNG 172
Query: 164 AFD-REPQYALLKELLTQIFGTPRYHPRSQPFVDH--IFTFSIADNRIWFRNYQIIEEDA 220
D + +L++ + +F + + I ++ + I R++ I +
Sbjct: 173 FGDGTQKHLSLVQTFIQNMFPSINVDTIQLGNLKRCLIVSYDEETDEIQMRHFAIRVVAS 232
Query: 221 AL 222
L
Sbjct: 233 GL 234
Score = 36.8 bits (85), Expect = 0.33
Identities = 14/29 (48%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L L+KI +G G LY
Sbjct: 338 VRLHEIGPRLTLELVKIEEGIDEGEVLYH 366
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
Length = 361
Score = 138 bits (346), Expect = 9e-32
Identities = 28/167 (16%), Positives = 59/167 (34%), Gaps = 13/167 (7%)
Query: 70 LMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPE 128
L +DLR +M PH+ K + +K+ + + ++ + + + +P
Sbjct: 17 LTRDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVL-SRTDNNANLRIIRAPR 75
Query: 129 GPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILS---FDPAFDRE-PQYALLKELL 178
GPS F + ++ S + P+L F+ ++ P ALL
Sbjct: 76 GPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTF 135
Query: 179 TQIFGTPRYHPRSQPFVDHIFTFSIADN-RIWFRNYQIIEEDAALVE 224
+F + V + + D+ I R++ I + +
Sbjct: 136 QNMFPPISVQHTNINSVKRVLLLNRRDDGYIDLRHFIISTKPVGISR 182
Score = 39.2 bits (91), Expect = 0.083
Identities = 16/51 (31%), Positives = 22/51 (42%), Gaps = 3/51 (5%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE---NPHYQSPNMHRRMIRLATA 267
L+EIGPR L LIKI + + GG LY + + + A
Sbjct: 259 IKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNFHEQSRA 309
>ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerevisiae]
sp|P38789|SSF1_YEAST SSF1 PROTEIN
pir||S46700 SSF1 protein - yeast (Saccharomyces cerevisiae)
gb|AAB68379.1| (U00061) Ssf1p [Saccharomyces cerevisiae]
gb|AAA79980.1| (U18113) Ssf1p [Saccharomyces cerevisiae]
Length = 453
Score = 137 bits (343), Expect = 2e-31
Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 29/203 (14%)
Query: 53 ERVLIF----SSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNK 107
+ ++ +S N L++D R +M PH+ + K + +KL +C
Sbjct: 23 PKSMVIRVGQTSL-ANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81
Query: 108 CIYFE-AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELK------MSGNCLKGSRPILS 160
F ++K ++ + ++ +P+GP+ F V + ++K S N P L
Sbjct: 82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141
Query: 161 FDPAFDREPQ----------YALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--- 207
F + ++ + IF S + + F I +R
Sbjct: 142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRV--FMINKDRETG 199
Query: 208 -IWFRNYQIIEEDAALVEIGPRF 229
I R+Y I + + R
Sbjct: 200 EISMRHYFIDIREVEISRNLKRL 222
Score = 38.0 bits (88), Expect = 0.15
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
+ L E+GPR L L+KI +G G L+ +S + + + A
Sbjct: 324 KAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAA 373
>ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyces cerevisiae]
sp|Q12153|SSF2_YEAST SSF2 PROTEIN
pir||S50248 SSF2 protein - yeast (Saccharomyces cerevisiae)
gb|AAA79981.1| (U18114) Ssf2p [Saccharomyces cerevisiae]
gb|AAB64748.1| (U28374) Ssf2p [Saccharomyces cerevisiae]
Length = 453
Score = 134 bits (336), Expect = 1e-30
Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 29/203 (14%)
Query: 53 ERVLIF----SSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNK 107
+ ++ +S N L++D R +M PH+ + K + +KL +C
Sbjct: 23 PKSMVIRVGQTSL-ANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81
Query: 108 CIYFE-AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELK------MSGNCLKGSRPILS 160
F ++K ++ + ++ +P+GP+ F V + ++K S N P L
Sbjct: 82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141
Query: 161 FDPAFDREPQ----------YALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--- 207
F + ++ + IF S + I F I +R
Sbjct: 142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRI--FMINKDRETG 199
Query: 208 -IWFRNYQIIEEDAALVEIGPRF 229
I R+Y I + + R
Sbjct: 200 EISMRHYFIDIREVEISRNLKRL 222
Score = 37.6 bits (87), Expect = 0.25
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
+ L E+GPR L L+KI G G L+ +S + + + A
Sbjct: 324 KAIKLTELGPRLTLKLVKIEDGICSGKVLHHEFVQKSSEEIKALEKRHAA 373
>gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces cerevisiae
hypothetical protein YKR081c (SP:P36160) [Caenorhabditis
elegans]
Length = 297
Score = 131 bits (328), Expect = 1e-29
Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 31/237 (13%)
Query: 50 KNKERVLIFSSRGINFR--TRHLMQDLRSLMPHSRAETKMDRKD------KLFVVNEVCE 101
+N ++ L RG H M DL + TKMD+ + +
Sbjct: 25 ENDKKAL--FCRGAKTNEIISHAMMDLFDM--KKPLTTKMDKHNPYHLFEDETPIVRAGS 80
Query: 102 MKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAEL---KMSGNCLKGS 155
+ + + KK+ + + +G A+ + + + + KM+ GS
Sbjct: 81 KFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRITSYKSSSNFEAAKMTL----GS 136
Query: 156 RPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR-IWFRNY 213
+P + + AF+ + + L+ F P+ ++ + F+ D + R Y
Sbjct: 137 KPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRLEGLETVIVFTALDETNLALRVY 196
Query: 214 QIIEED-------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIR 263
+ + + L E+GP +++ L R+ +
Sbjct: 197 RPMLKKSATATPRVELAEMGPSISFEVMRKKLADDALFKLACKKPKALMKKRRKNLS 253
>gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melanogaster]
Length = 289
Score = 126 bits (316), Expect = 3e-28
Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 25/226 (11%)
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCE------MKNCNKCIYFEAK 114
R + M+DL++L ++RK+ + ++ + +
Sbjct: 7 RKCGGNVKLCMKDLQAL--KKPLVKVLNRKNDITPFDDPSSLEFLTMKNDAALFTFGSTS 64
Query: 115 KKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKM--SGNCLKGSRPILSFDP-AFDRE 168
KK+ + L E + ++ ++E K G C+ +P L F+ + +
Sbjct: 65 KKRPDNIILGRIFENEVLDMFELGIKRYQAISEFKNEKIGACV---KPCLVFNGPKWAQT 121
Query: 169 PQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR-IWFRNYQIIEED-------A 220
+ L+ L F + ++H+ +F++ D+ I R+Y+I+ +
Sbjct: 122 EELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDDMNILMRSYRILLKKSGQRTPRI 181
Query: 221 ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
L EIGP ++ + S Q ++ I
Sbjct: 182 ELEEIGPSADFSIRRTKIASEDLYKQARKQPKQLKVGKKKNISTDA 227
>emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta]
Length = 186
Score = 124 bits (310), Expect = 1e-27
Identities = 33/186 (17%), Positives = 68/186 (35%), Gaps = 17/186 (9%)
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAK 114
+I +S+ + ++ L+ + R + K K + + KN N IY
Sbjct: 5 SIITTSKKPSKTLLKILHLLKKYLITPRYYKR--NKFKFRHLMIYLKRKNINNMIYLFEN 62
Query: 115 KKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALL 174
+ ++ + N E KF + N+ + + P + + + +
Sbjct: 63 NNR-YFVSIVNFQENIHIKFGINNLLITSRISSIIYKD---YPEIIYLNF--KAQHEIYI 116
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE----EDAALVEIGPRFV 230
+++LTQI + S + I+FR+++ I D + EIGPR
Sbjct: 117 QKVLTQIL-----YQVSPLTNRELLCIYSNKGIIYFRSFRYIFSKNLRDVKIQEIGPRLN 171
Query: 231 LNLIKI 236
++ I
Sbjct: 172 FKILNI 177
>ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens]
ref|XP_003882.1| hypothetical protein FLJ11100 [Homo sapiens]
dbj|BAA92003.1| (AK001962) unnamed protein product [Homo sapiens]
Length = 129
Score = 123 bits (307), Expect = 4e-27
Identities = 86/131 (65%), Positives = 95/131 (71%), Gaps = 11/131 (8%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEE---------FIVPPPVSEGKWKN 51
M+A KRKR A KK K+ +E A +P PV +GKWKN
Sbjct: 1 MAATKRKR--RGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKN 58
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
KER+LIFSSRGINFRTRHLMQDLR LMPHS+A+TKMDRKDKLFV+NEVCEMKNCNKCIYF
Sbjct: 59 KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYF 118
Query: 112 EAKKKQDLYMW 122
EAKKKQDLYMW
Sbjct: 119 EAKKKQDLYMW 129
>pir||T39206 hypothetical protein SPAC926.08c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB54156.1| (AL110469) hypothetical protein [Schizosaccharomyces pombe]
Length = 317
Score = 119 bits (296), Expect = 6e-26
Identities = 25/199 (12%), Positives = 57/199 (28%), Gaps = 27/199 (13%)
Query: 89 RKDKLFVVNEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNI 139
+K+ + + E + + KK+ + + + N
Sbjct: 62 KKNNILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVNY 121
Query: 140 HTLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHI 198
++ + + G++P++ F FD P Y +K L F + ++
Sbjct: 122 KSIQSFSATP-IVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDSAGLSYV 180
Query: 199 FTFS---IADNR------IWFRNY-------QIIEEDAALVEIGPRFVLNLIKIFKGSFG 242
S ++ + FR Y + L E+GPR N+ ++
Sbjct: 181 IVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRRVQPAESD 240
Query: 243 GPTLYENPHYQSPNMHRRM 261
++
Sbjct: 241 VLEEALKKPKTQEPKPKKN 259
>pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (strain Orsay)
emb|CAB49198.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 224
Score = 117 bits (292), Expect = 2e-25
Identities = 27/172 (15%), Positives = 50/172 (28%), Gaps = 24/172 (13%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI +S RTR DL + P+S T+ K + + + + + K
Sbjct: 3 LITTSHRPTRRTRSFGHDLERVFPNSLYMTR--GKKTIQELLMEAYDRGYERLLIINVWK 60
Query: 116 KQDLYMWLSNS-PE--GPSAKFLVQNIHTLAELKMSG-NCLKGSRP------------IL 159
L M P+ G + + E+ G N ++ P L
Sbjct: 61 GNPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHL 120
Query: 160 SFDPAFDREPQYALLKELLTQIFG-TPRYHPRSQPFVDH-----IFTFSIAD 205
+F F + + +Y+ ++ + F D
Sbjct: 121 AFAQVFSELTTGKFVPRGDKSLLSIADKYNTDVLAVIERHPRGIVVNFYRLD 172
>pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii
dbj|BAA31023.1| (AP000007) 334aa long hypothetical protein [Pyrococcus horikoshii]
Length = 224
Score = 115 bits (286), Expect = 1e-24
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 24/172 (13%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI +S RTR DL ++P+S T+ K + + + + + K
Sbjct: 3 LITTSHRPTRRTRSFGHDLERVIPNSLYLTR--GKKTIQELLMEAYDRGYERLLIINVWK 60
Query: 116 KQDLYMWLSNS-PE--GPSAKFLVQNIHTLAELKMSG-NCLKGSRPILS----------- 160
L M PE G + + E+ G N ++ P++
Sbjct: 61 GNPLKMTFIKVHPEDWGYLGYLYLHGVKLQREMGFKGLNPIREDMPLVITTAKRVGLDHL 120
Query: 161 -FDPAFDREPQYALLKELLTQIFG-TPRYHPRSQPFVDH-----IFTFSIAD 205
F F + + RY+ ++ + F D
Sbjct: 121 AFAQVFSELTTGKFVPRGDKSLLSIADRYNTDVLAVIERHPRGIVINFYRLD 172
>emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans]
Length = 97
Score = 109 bits (271), Expect = 5e-23
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE--- 218
+ R + L IF + T + I+FR ++ I
Sbjct: 2 NNFNSRLG--KTVGRLFQSIFPHKPE-----LQGRQVITLHNQRDYIFFRRHRYIFRNEE 54
Query: 219 DAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMI 262
L E+GP+F L L ++ KG G ++E+ + + +
Sbjct: 55 KVGLQELGPQFTLKLRRMQKG-VRGDVVWEHRPDMERDKKKFYL 97
>dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~similar to unknown
protein [Arabidopsis thaliana]
Length = 314
Score = 107 bits (267), Expect = 2e-22
Identities = 31/204 (15%), Positives = 70/204 (34%), Gaps = 23/204 (11%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNE--------VCEMKNC 105
+ LI + +M +L L ++ + + +C
Sbjct: 29 KTLILHGTKTSATLSSVMTELYRLKKGGAIRYSRRNEN-IRPFESGGETSLEFFSQKTDC 87
Query: 106 NKCIYFEAKKKQDLYMWLSNSPE---GPSAKFLVQNIHTLAELK--MSGNCLKGSRPILS 160
+ +Y KK+ + L + + ++N +L +G++P +
Sbjct: 88 SIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVGIENFKSLRAFSYDKKFAPHEGTKPFIC 147
Query: 161 FDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFS-IADNRIWFRNYQIIEE 218
F F+ + LKE+LT +F + +D + S I+ +++ + + +
Sbjct: 148 FIGEGFENVSELKHLKEVLTDLFRGEVVDNLNLTGLDRAYVCSAISPTKVFLTHCALKLK 207
Query: 219 D-------AALVEIGPRFVLNLIK 235
LVE+GP L + +
Sbjct: 208 KSGSIVPRMELVEVGPSMDLVIRR 231
>emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
emb|CAC23146.1| (AL512964) hypothetical [Sulfolobus solfataricus]
Length = 170
Score = 89.8 bits (221), Expect = 4e-17
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
R++I SSR + RTR+ + L ++P S T+ + + E ++ A
Sbjct: 7 RIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKI--EIFERAINLGALYLLFVLA 64
Query: 114 KKKQDLYMWLSNSPEGPSAK--FLVQNIHTLAELKMSGNCLKGS 155
K L + + + E S K F + + ++ +S N +KG
Sbjct: 65 KNGNPLRIIVYDL-ESLSIKYFFKLSGLSLPSDYNVSLNQIKGH 107
>pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (strain K1)
dbj|BAA80440.1| (AP000061) 197aa long hypothetical protein [Aeropyrum pernix]
Length = 197
Score = 85.1 bits (209), Expect = 1e-15
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
R+L+ +SR + R R ++DL + +P + T+ + + ++ ++ +
Sbjct: 15 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSMEELAREAIIRGADRIVVVGE 72
Query: 114 KKKQDLYMWLSNSPEGPS-----AKFLVQNIHTLAE 144
++ + + EGP F+V+ + E
Sbjct: 73 RRGNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRE 107
>dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 179
Score = 78.9 bits (193), Expect = 9e-14
Identities = 24/151 (15%), Positives = 46/151 (29%), Gaps = 23/151 (15%)
Query: 130 PSAK--FLVQNIHTLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPR 186
PS F + N+ + + G++P++ F FD P Y +K L F
Sbjct: 14 PSIYKTFNLTNVFIVQATP----IVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEP 69
Query: 187 YHPRSQPFVDHIFTFS---IADNR------IWFRNY-------QIIEEDAALVEIGPRFV 230
+ ++ S ++ + FR Y + L E+GPR
Sbjct: 70 IQKLDSAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRID 129
Query: 231 LNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
N+ ++ ++
Sbjct: 130 FNIRRVQPAESDVLEEALKKPKTQEPKPKKN 160
>pir||F69190 conserved hypothetical protein MTH680 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85185.1| (AE000848) conserved protein [Methanothermobacter
thermautotrophicus]
Length = 155
Score = 41.5 bits (97), Expect = 0.014
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
L+ +SR + RTR Q L +M R + K L V +
Sbjct: 2 LLTTSRKPSQRTRSFSQRLSRIMGW-RYINR--GKMSLRDVLIEAR----GPVAVVSERH 54
Query: 116 KQDLYMWL 123
+
Sbjct: 55 GNPARITF 62
>sp|Q58012|Y594_METJA HYPOTHETICAL PROTEIN MJ0594
pir||B64374 hypothetical protein MJ0594 - Methanococcus jannaschii
gb|AAB98595.1| (U67508) M. jannaschii predicted coding region MJ0594
[Methanococcus jannaschii]
Length = 169
Score = 39.2 bits (91), Expect = 0.068
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
++ +SR + RTR +DL + + + K L + E+ + + K
Sbjct: 2 ILTTSRKPSQRTRSFARDLERTL-NIPYVQR--GKLSLKEIFEIDK-----HVLLIGEFK 53
Query: 116 KQDLYMWLSNSPEGPSAKFLVQNIHTLAEL 145
+ + + + + E+
Sbjct: 54 ANPGTLVVYDVENEKRLSSFIS-VKLQREI 82
>gb|AAH00535.1|AAH00535 (BC000535) Unknown (protein for MGC:3007) [Homo sapiens]
Length = 251
Score = 34.9 bits (80), Expect = 1.3
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 61 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 89
>ref|NP_069935.1| conserved hypothetical protein [Archaeoglobus fulgidus]
pir||A69388 conserved hypothetical protein AF1106 - Archaeoglobus fulgidus
gb|AAB90132.1| (AE001027) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 153
Score = 33.7 bits (77), Expect = 3.6
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 57 IFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKK 116
+ +SR +TR + L + + + K L + + E K
Sbjct: 4 LTTSRKPGRKTRRFAKVLARFF-NWKYVNR--GKLSLEDLAGIAER-----FWIISEVKG 55
Query: 117 QDLYMWLS-NSPEGPSAKFLVQNI 139
+ L + F + N+
Sbjct: 56 NPAILNLYERGEKTLEVSFTLSNV 79
>dbj|BAB17147.1| (AP002868) hypothetical protein~similar to Arabidopsis thaliana
chromosome 3, MRC8.17 [Oryza sativa]
Length = 682
Score = 32.2 bits (73), Expect = 9.1
Identities = 7/73 (9%), Positives = 17/73 (22%), Gaps = 7/73 (9%)
Query: 107 KCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRP-ILSFD-PA 164
I + + + + FL + M G +P +L
Sbjct: 466 DLILGQHPTRNPKGYTMVDFTR-----FLRHAYGLRRDKPMVLGETSGKKPRMLIISRRR 520
Query: 165 FDREPQYALLKEL 177
+ + +
Sbjct: 521 TRKLLNLRQVAAM 533
Searching..................................................done
Results from round 6
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana] 290 2e-77
emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schiz... 284 1e-75
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CH... 277 1e-73
gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175... 275 4e-73
ref|NP_014565.1| Essential nucleolar protein required for biogen... 267 2e-70
pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment) 264 1e-69
gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melan... 263 3e-69
gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melan... 261 1e-68
gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar... 260 2e-68
sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHR... 259 5e-68
sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN ... 258 8e-68
dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens] 258 9e-68
sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CH... 255 4e-67
pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegan... 255 5e-67
emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora cra... 250 2e-65
emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis tha... 250 2e-65
sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHR... 249 4e-65
gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma... 246 2e-64
emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipoly... 244 1e-63
ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae] >gi|1730744|sp... 240 2e-62
gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melano... 231 8e-60
ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae] >gi|731684|sp|... 230 2e-59
pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana ... 224 9e-58
dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus] 205 5e-52
dbj|BAB10077.1| (AB010069) contains similarity to RNA binding pr... 201 1e-50
dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens] 198 9e-50
emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapi... 192 6e-48
emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sap... 188 8e-47
ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens] 177 2e-43
ref|NP_064615.1| peter pan (Drosophila) homolog; second-step spl... 177 3e-43
ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae] >gi|549638|... 173 2e-42
gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melano... 161 1e-38
gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanoga... 158 7e-38
gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces c... 157 2e-37
gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster] 157 2e-37
gb|AAF39738.1|AC005935_5 (AC005935) RNA Binding Protein 1 [Leish... 151 1e-35
pir||T39206 hypothetical protein SPAC926.08c - fission yeast (S... 150 3e-35
gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumoc... 147 2e-34
pir||T39008 probable mating protein - fission yeast (Schizosacch... 142 6e-33
ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerev... 138 9e-32
dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~simil... 138 1e-31
pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegan... 136 3e-31
ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyc... 135 9e-31
emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta] 122 9e-27
pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (st... 120 2e-26
pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii ... 119 4e-26
ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens] >g... 118 1e-25
emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans] 108 1e-22
dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizos... 107 2e-22
emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfat... 83 4e-15
pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (str... 83 6e-15
Sequences not found previously or not previously below threshold:
pir||F69190 conserved hypothetical protein MTH680 - Methanobacte... 41 0.026
sp|Q58012|Y594_METJA HYPOTHETICAL PROTEIN MJ0594 >gi|2128398|pir... 39 0.095
pir||F81276 probable sugar-phosphate nucleotide transferase Cj13... 34 2.8
ref|NP_069935.1| conserved hypothetical protein [Archaeoglobus f... 33 4.3
gb|AAH00535.1|AAH00535 (BC000535) Unknown (protein for MGC:3007)... 33 5.4
CONVERGED!
>gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana]
Length = 315
Score = 290 bits (735), Expect = 2e-77
Identities = 119/281 (42%), Positives = 169/281 (59%), Gaps = 14/281 (4%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
M ++ ++ ++ E+ P ++NKE+VL+ S
Sbjct: 1 MGRKRKHSETVTAAPVKDSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTCS 60
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
R INFR RHLM ++ SL+PH + ++K++ + + +NE+ E+K + C++FE +K +DL
Sbjct: 61 RRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDL 120
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
YMW+ SP GPS KFLV +HT+ ELK++GN LKGSRP+L+F F+ + + LLKE+LT
Sbjct: 121 YMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLT 180
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII-------------EEDAALVEIG 226
QIFG P H +S+P+ DH+F FSI D+ IWFRNYQI + L+E+G
Sbjct: 181 QIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVG 240
Query: 227 PRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
PRF LN IKIF GSFGG TLYENP Y SPN R + + A
Sbjct: 241 PRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKA 281
>emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schizosaccharomyces
pombe]
Length = 295
Score = 284 bits (720), Expect = 1e-75
Identities = 125/293 (42%), Positives = 179/293 (60%), Gaps = 16/293 (5%)
Query: 22 KKQLAGSEQEATAGEEFIVPPPVSEGKWKN--------KERVLIFSSRGINFRTRHLMQD 73
+L SE+ +E PV G+ K++VL+ SSRG+ +R RHL+ D
Sbjct: 4 VYKLKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLND 63
Query: 74 LRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAK 133
L S+MPHS+ ++K+D KD+L+ +NE+ E+ NCN +FE+++++DLY+ ++ +P GP+ K
Sbjct: 64 LVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVK 123
Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQP 193
F V+N+HT+ EL M+GN LKGSRPILSFD FD P ++KELL Q FG P+ RS+P
Sbjct: 124 FHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKP 183
Query: 194 FVDHIFTFSIADNRIWFRNYQIIE------EDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
F+D + T +IAD +IWFRNY+I E + L+EIGPRFV+ +I I +GSFGGP +Y
Sbjct: 184 FIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGSFGGPVIY 243
Query: 248 ENPHYQSPNMHRRMIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEAVF 300
+N + S M R IR A + VIP DP + VF
Sbjct: 244 KNDTFVSSTMVRAAIRNQAAQ--RYVNRQESKLERQVRAQQNVIPEDPLDNVF 294
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 277 bits (703), Expect = 1e-73
Identities = 47/271 (17%), Positives = 100/271 (36%), Gaps = 18/271 (6%)
Query: 4 YKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGI 63
++ R +L +K + + G + +++I +SR
Sbjct: 29 REKIRNALENNTKIDYNLRKDAIELAKGSDWGGQQYETDSEYRWAGAQDPKIVITTSRDP 88
Query: 64 NFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWL 123
+ R + ++++ + P+++ + + V + + ++ I F + M +
Sbjct: 89 SSRLKMFAKEMKLIFPNAQRINR--GHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLV 146
Query: 124 SNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFG 183
+ P GP+A F + N+ ++ G + P L FD + +L +F
Sbjct: 147 CHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDNLNSKLGH--RFTTILKHLFP 203
Query: 184 TPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIKIFKGS 240
P+ I TFS +++ I FR++ E + L E GPRF L +I G+
Sbjct: 204 VPKPDS------KRIITFSNSEDYISFRHHVYKTENDGEVELTEAGPRFELKPYQIKLGT 257
Query: 241 FG----GPTLYENPHYQSPNMHRRMIRLATA 267
+ Y + R + ++ A
Sbjct: 258 LETLAAAEDEWVLRSYTNTARKRTFLSISRA 288
>gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175 [Arabidopsis thaliana]
Length = 320
Score = 275 bits (698), Expect = 4e-73
Identities = 122/287 (42%), Positives = 175/287 (60%), Gaps = 22/287 (7%)
Query: 1 MSAYKRKRGSLPEVATNTKK------AKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKER 54
M ++ + K+ L G + ++ E ++ +KNKE+
Sbjct: 1 MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKS--EGEAEKAKALTSSGFKNKEK 58
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNKCIYFEA 113
VL+ SR I+FR R LM ++ SL+PH + ++K++ + K +NE+ E+KN N C++FE
Sbjct: 59 VLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFEC 118
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+K +DLYMW+ SP GPS KFLV+ +H + E+K++GN LKGSRP+L+F FD++ + L
Sbjct: 119 RKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKL 178
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII-------------EEDA 220
LKE+LTQ+FG P+ H +S+P+ DH+F FSI D IWFRNYQI +
Sbjct: 179 LKEMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKM 238
Query: 221 ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A
Sbjct: 239 TLIEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKA 285
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 267 bits (676), Expect = 2e-70
Identities = 124/278 (44%), Positives = 167/278 (59%), Gaps = 14/278 (5%)
Query: 33 TAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDK 92
+ + + ++ NK+R L+ SSRG+N+R RHL+QDL L+PHSR E K+D K
Sbjct: 11 KSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKD 70
Query: 93 LFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCL 152
L +NE+ E+ NCN ++FEA+K QDLY+WLS P GP+ KF +QN+HT+ EL +GNCL
Sbjct: 71 LQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCL 130
Query: 153 KGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN 212
KGSRP+LSFD F+ P Y L+KELL F P +S+PF+DH+ +FSI D++IW R
Sbjct: 131 KGSRPVLSFDQRFESSPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRT 190
Query: 213 YQII------------EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRR 260
Y+I EED +LVEIGPRFV+ +I I +GSFGGP +YEN Y SPN+ R
Sbjct: 191 YEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRA 250
Query: 261 MIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEA 298
I+ A V+ DP
Sbjct: 251 QIKQQAAE--EAKSRAEAAVERKIKRRENVLAADPLSN 286
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 264 bits (669), Expect = 1e-69
Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 19/260 (7%)
Query: 12 PEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNK--ERVLIFSSRGINFRTRH 69
P T + + + + ++LI +S + RT
Sbjct: 7 PVPKTIDNQRVYDETT-VDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVR 65
Query: 70 LMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEG 129
L + L +++P+S + R L + C ++ I +K + LS+ P G
Sbjct: 66 LCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNG 123
Query: 130 PSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHP 189
P+A F + ++ E+K G P + + R + + +F
Sbjct: 124 PTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGH--SIGRMFASLFPHNP--- 178
Query: 190 RSQPFVDHIFTFSIADNRIWFRNYQIIE---EDAALVEIGPRFVLNLIKIFKGSFG---G 243
Q + TF + I+FR ++ I + + E+GPRF L L + KG+F G
Sbjct: 179 --QFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYG 236
Query: 244 PTLYENPH-YQSPNMHRRMI 262
+ + + + +
Sbjct: 237 EYEWVHKPREMDTSRRKFHL 256
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 263 bits (666), Expect = 3e-69
Identities = 48/266 (18%), Positives = 104/266 (39%), Gaps = 20/266 (7%)
Query: 9 GSLPEVATNTKKAKKQLAG---SEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINF 65
S+ E K K+ S + A G + ++++ +S +
Sbjct: 34 KSINENKAIGSKNVKKSLTAYKSLKYADEGVDDRTVNDEYHYAGCEDPKIMLTTSHNPSS 93
Query: 66 RTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSN 125
R + M++LR ++P+++ + + +L + C N + + + + +
Sbjct: 94 RLKMFMKELRLIIPNAQQMNRGN--YQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCH 151
Query: 126 SPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTP 185
P GP+A F + ++ ++ G + +P L F+ +K +L +F P
Sbjct: 152 LPYGPTAFFNISDVVMRHDIPDIG-HMSEQKPHLIFNNFKTPIG-LRTVK-ILKHLFPVP 208
Query: 186 RYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE--EDAALVEIGPRFVLNLIKIFKGSFG- 242
+ + + +F ++ I FR++Q ++ L E+GPRF L L +I G+
Sbjct: 209 KENS------QRVMSFLNHNDSIIFRHHQYKYVNKELELTEVGPRFSLKLYQIKLGTLEN 262
Query: 243 ---GPTLYENPHYQSPNMHRRMIRLA 265
T + N Y + + R +
Sbjct: 263 IKAADTEWINRPYMNTSQKRLIFSND 288
>gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melanogaster]
Length = 359
Score = 261 bits (661), Expect = 1e-68
Identities = 136/268 (50%), Positives = 183/268 (67%), Gaps = 5/268 (1%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
M + + + +VP + KW NK+RVL+FS+
Sbjct: 1 MGRKFQNKKKKA-APQLEIVPL-DENPPL-PPQRSSDDVVPKKARKEKWVNKQRVLVFSA 57
Query: 61 RGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLY 120
RGI+ R RHLM+D+++LMPH R E+KM+R L VVNE+CEMK+CNK + FE ++K+DLY
Sbjct: 58 RGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNEMCEMKHCNKAMLFEGRRKRDLY 117
Query: 121 MWLSNSPE--GPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELL 178
MW+SN+ GPSAKFL++NIHT+AELKM+GNCL+GSRP+LSFD FD P LLKEL
Sbjct: 118 MWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKELF 177
Query: 179 TQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAALVEIGPRFVLNLIKIFK 238
Q + P +HP+SQPFVDH+FTF+ D RIWFRN+QI+ ED L E+GPR+V+N +KIF
Sbjct: 178 VQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQILSEDGGLSEVGPRYVMNPVKIFD 237
Query: 239 GSFGGPTLYENPHYQSPNMHRRMIRLAT 266
GSF G T++ENP Y SP+ R++++ A
Sbjct: 238 GSFTGKTIWENPDYVSPSKQRQVLKKAA 265
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
1537-3735 [Arabidopsis thaliana]
gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
73469-75667 [Arabidopsis thaliana]
Length = 294
Score = 260 bits (660), Expect = 2e-68
Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 27/276 (9%)
Query: 3 AYKRKRGSLPEVATNTKKAK------KQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVL 56
+ R +L E + + +Q E + TA + ++L
Sbjct: 28 QKRLIREALQEGKPIPTELRNVEAKLRQEIDLEDQNTA-VPRSHIDDEYANATEADPKIL 86
Query: 57 IFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKK 116
+ +SR + ++L+ + P+S+ + + + E + I +
Sbjct: 87 LTTSRNPSAPLIRFTKELKFVFPNSQRINR--GSQVISEIIETARSHDFTDVILVHEHRG 144
Query: 117 QDLYMWLSNSPEGPSAKFLVQNIHTLAEL--KMSGNCLKGSRPILSFDPAFDREPQYALL 174
+ +S+ P GP+A F + N+ T ++ K S + P L F+ + Q +
Sbjct: 145 VPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIGKMPEQYPHLIFNNFTTQMGQ--RV 202
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII-----EEDAALVEIGPRF 229
+L IF P+ I TFS + I FRN+ + L EIGPRF
Sbjct: 203 GNILKHIFPAPKLDA------KRIVTFSNQSDYISFRNHVYDKGEGGPKSIELKEIGPRF 256
Query: 230 VLNLIKIFKGSF---GGPTLYENPHYQSPNMHRRMI 262
L L ++ G+ + Y + + R+ I
Sbjct: 257 ELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
pir||S44853 K12H4.3 protein - Caenorhabditis elegans
gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank: CE5D1 (Z14791),
CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
putative [Caenorhabditis elegans]
Length = 352
Score = 259 bits (656), Expect = 5e-68
Identities = 125/264 (47%), Positives = 184/264 (69%), Gaps = 4/264 (1%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSR 61
SA+++ ++ + ++ + E W N+ERVL+ SR
Sbjct: 15 SAHQKMEWEAAGAKDSSSDDSSDESDNDDQPKQATEET---RKRAELWTNRERVLVLCSR 71
Query: 62 GINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYM 121
G + RTR+LM+D++ L+PH++ ++K+D++ L V+NE+ EMKNC K +YFE++K++D Y+
Sbjct: 72 GADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKVMYFESRKRKDTYL 131
Query: 122 WLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181
W+SN +GPS KFLV N+HT+ ELKMSGNCL+ SRP+LSFD AFD++PQ L+K +L Q
Sbjct: 132 WMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQT 191
Query: 182 FGTPRYHPRSQPFVDHIFTFSIAD-NRIWFRNYQIIEEDAALVEIGPRFVLNLIKIFKGS 240
GTP +HPRSQPFVDH+F FS+ + ++IWFRN+QI++E L E+GPRFVL ++++F GS
Sbjct: 192 LGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGPRFVLEMVRLFAGS 251
Query: 241 FGGPTLYENPHYQSPNMHRRMIRL 264
F G LY+NP+Y SPN+ RR R
Sbjct: 252 FEGAVLYDNPNYVSPNVIRREHRK 275
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
Length = 289
Score = 258 bits (654), Expect = 8e-68
Identities = 47/266 (17%), Positives = 96/266 (35%), Gaps = 22/266 (8%)
Query: 4 YKRKRGSLPEVATN------TKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLI 57
+ R +L + +K E AT E + + +VL+
Sbjct: 29 RRALRKALEGNKELNKDLQEDSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLV 88
Query: 58 FSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQ 117
+SR + R +++R L+P+S + + + + E + + +
Sbjct: 89 TTSREPSSRLAQFAKEVRLLIPNSYRLNRGN--IVVGSLVEAARANDITDIVILHEHRGI 146
Query: 118 DLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKEL 177
+ +S+ P GP+ F + N+ ++ +G + + P L F+ + +K
Sbjct: 147 PDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGT-MSEAYPHLIFENLTSKLG--KRVKTA 203
Query: 178 LTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII---EEDAALVEIGPRFVLNLI 234
L+ +F + TF+ D+ I FR++ + L E GPRF + L
Sbjct: 204 LSALFPPDPKDTTP-----RVVTFANTDDYISFRHHIYAKTGPKQIILSEAGPRFEMKLF 258
Query: 235 KIFKGS---FGGPTLYENPHYQSPNM 257
+I G+ ++ YQ
Sbjct: 259 EITLGTVDMVDADVEWKLKPYQRHKR 284
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 258 bits (653), Expect = 9e-68
Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 29/281 (10%)
Query: 1 MSAYKRKRGSL----------PEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWK 50
++A K+ + P T + + +
Sbjct: 79 LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETT-VDPNDEEVAYDEATDEFASYFN 137
Query: 51 NK--ERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKC 108
+ ++LI +S + RT L + L +++P+S + R L + C ++
Sbjct: 138 KQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDL 195
Query: 109 IYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDRE 168
I +K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 196 IVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRL 255
Query: 169 PQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE---EDAALVEI 225
+ + +F Q + TF + I+FR ++ I + + E+
Sbjct: 256 GH--SIGRMFASLFPHNP-----QFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQEL 308
Query: 226 GPRFVLNLIKIFKGSFG---GPTLYENPH-YQSPNMHRRMI 262
GPRF L L + KG+F G + + + + +
Sbjct: 309 GPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
Length = 754
Score = 255 bits (647), Expect = 4e-67
Identities = 53/295 (17%), Positives = 102/295 (33%), Gaps = 43/295 (14%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEAT------AGEEFIVPPPVSEGKWKNK--E 53
+ R L E A + K + E +AT E + +
Sbjct: 469 GERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSP 528
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
+V+I + T +L+ +P+S T+ + L + E + + +
Sbjct: 529 KVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL--LKTIIEQAKEREFTDLLVVHE 586
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLK------------GS 155
+K+ + + PEGP+A F + ++ +LK+ CLK
Sbjct: 587 DRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGESTSH 646
Query: 156 RPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P + + R + +L +F + + TF + I+FR+++
Sbjct: 647 FPEVILNNFNTRLGH--NIARMLACLFPHDP-----KFTGRRVVTFHNQRDYIFFRHHRY 699
Query: 216 IEEDAA----LVEIGPRFVLNLIKIFKGSFG---GPTLYENP-HYQSPNMHRRMI 262
+ L+E+GPRF L L + KG+F G + H + R +
Sbjct: 700 EFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 754
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
Length = 746
Score = 255 bits (646), Expect = 5e-67
Identities = 53/295 (17%), Positives = 102/295 (33%), Gaps = 43/295 (14%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSEQEAT------AGEEFIVPPPVSEGKWKNK--E 53
+ R L E A + K + E +AT E + +
Sbjct: 461 GERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSP 520
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
+V+I + T +L+ +P+S T+ + L + E + + +
Sbjct: 521 KVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL--LKTIIEQAKEREFTDLLVVHE 578
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLK------------GS 155
+K+ + + PEGP+A F + ++ +LK+ CLK
Sbjct: 579 DRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGESTSH 638
Query: 156 RPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215
P + + R + +L +F + + TF + I+FR+++
Sbjct: 639 FPEVILNNFNTRLGH--NIARMLACLFPHDP-----KFTGRRVVTFHNQRDYIFFRHHRY 691
Query: 216 IEEDAA----LVEIGPRFVLNLIKIFKGSFG---GPTLYENP-HYQSPNMHRRMI 262
+ L+E+GPRF L L + KG+F G + H + R +
Sbjct: 692 EFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 746
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 250 bits (634), Expect = 2e-65
Identities = 48/269 (17%), Positives = 99/269 (35%), Gaps = 18/269 (6%)
Query: 4 YKRKRGSLPEVATNT---KKAKKQLAGSEQEATAGE--EFIVPPPVSEGK-WKNKERVLI 57
+ R +L K K+ + + + + I R+L+
Sbjct: 29 RAKLRSALASGKPLDPEIAKDKELRKDFDYDVSRDVNGDAIDIDDEYSELSGVIDPRILV 88
Query: 58 FSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQ 117
+SR + R +++R L+P S + + L + + +N + +
Sbjct: 89 TTSRDPSSRLGQFSKEIRLLLPTSVRLNRGN--LVLEDLVGAAKAQNLTDVVLLHEHRGV 146
Query: 118 DLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN-CLKGSRPILSFDPAFDREPQYALLKE 176
M +S+ P GP+ + N+ A++ S + S P L F+ + + + +
Sbjct: 147 PTAMTISHFPHGPTLMVSLHNVVLRADIPKSIKGTVSESYPRLIFEGFSTKLGE--RVVK 204
Query: 177 LLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII---EEDAALVEIGPRFVLNL 233
+L +F PR + + + TF D+ I R++ + + L E+GPRF +
Sbjct: 205 ILKHLFP-PREPTQKPNVGNRVITFVNNDDTIEVRHHVYVRTSYDSVELSEVGPRFTMKP 263
Query: 234 IKIFKGSF---GGPTLYENPHYQSPNMHR 259
KI G+ T + Y + +
Sbjct: 264 FKITMGTLDNKDADTEWHLSQYTRTSRKK 292
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
Length = 343
Score = 250 bits (634), Expect = 2e-65
Identities = 52/285 (18%), Positives = 98/285 (34%), Gaps = 35/285 (12%)
Query: 3 AYKRKRGSLPEVATNTKKAKKQLAGSEQE-----ATAGEEFIVPP-PVSEGKWKNK--ER 54
A +++ L E K E + E F + + +
Sbjct: 69 AAEKRALELGEEPPQKMIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPK 128
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAK 114
VL+ + R + R L+ +L S++P+S + + L + E K+ I
Sbjct: 129 VLLTTCRFNSTRGPALISELLSVIPNSHYQKR--GTYDLKKIVEYATKKDFTSLIVVHTN 186
Query: 115 KKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALL 174
+++ + + P GP+A F + N+ ++K GN +P L + R +
Sbjct: 187 RREPDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNPTS-HQPELVLNNFTTRLGN--RV 243
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAA------------- 221
+F + TF + I+FR+++ I E
Sbjct: 244 GRFFQSLFPPDPN-----FRGRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKP 298
Query: 222 -LVEIGPRFVLNLIKIFKGSFG---GPTLYENPHYQSPNMHRRMI 262
L E GPRF L L+ + G+F G + + + R +
Sbjct: 299 RLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
pir||T38834 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
Length = 306
Score = 249 bits (631), Expect = 4e-65
Identities = 44/275 (16%), Positives = 92/275 (33%), Gaps = 24/275 (8%)
Query: 3 AYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNK---ERVLIFS 59
KR R S AT K E + + + + + ++L+ +
Sbjct: 41 EKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTT 100
Query: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
S+ + + +L P++ + ++ + E + + +K+
Sbjct: 101 SKRASRKCYDFASELLDCFPNAEFRKR-TGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTN 159
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
+ L + P GPS F + N+ T E+ G G P L + R +
Sbjct: 160 ALTLVHLPNGPSFYFTLSNLQTAKEISNHGRST-GHIPELIINNFSTRLG--MTVARAFQ 216
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDA---------ALVEIGPRFV 230
+F Q + T + ++FR ++ + L E+GPRF
Sbjct: 217 SLFIQTP-----QIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQELGPRFT 271
Query: 231 LNLIKIFKGSFG---GPTLYENPHYQSPNMHRRMI 262
+ L + KG + G +E+ + + + +
Sbjct: 272 MRLRMVQKGVWDRKEGEVFFESNAGEESDRRKFWL 306
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
Length = 287
Score = 246 bits (624), Expect = 2e-64
Identities = 41/273 (15%), Positives = 101/273 (36%), Gaps = 24/273 (8%)
Query: 2 SAYKRKRGSLPEVAT------NTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERV 55
+ ++ R ++ K+ + + T + RV
Sbjct: 27 ARKEQFREAVSNATPLPGHLHKDALRLKKFTELDDDQTRTLQ-TSVDDEYANAGVEDPRV 85
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
L+ +SR + + +++R ++P + + + + + + + + + +
Sbjct: 86 LVTTSREPSQKLLEFAKEIRLVIPSAVRMNRGN--LSVRQLMDAARRGQYSDVVVLQESQ 143
Query: 116 KQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLK 175
+ +S+ P GP+ F + N+ T +++ G + P L F+ R ++
Sbjct: 144 GVPDSLTVSHLPLGPTVVFTIHNLVTRHDIQDVGT-MSEQHPHLIFENFTTRLG--RRVR 200
Query: 176 ELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE---EDAALVEIGPRFVLN 232
++L +F P+ P + TF ++ + FR++ + L E+GPR +
Sbjct: 201 DVLKFLFPVPK------PRPTRVLTFDNQNDFVSFRHHTFRAVKGREVQLTEVGPRMDVA 254
Query: 233 LIKIFKGSF---GGPTLYENPHYQSPNMHRRMI 262
+I G+ T + Y + RR++
Sbjct: 255 PYRITLGTLEMDDAETEWVLQPYMNTAKKRRLL 287
>emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipolytica]
Length = 333
Score = 244 bits (618), Expect = 1e-63
Identities = 44/261 (16%), Positives = 90/261 (33%), Gaps = 19/261 (7%)
Query: 5 KRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGIN 64
K KR + T K + E + +VLI +S+
Sbjct: 89 KEKRLAENVPDTIEAKRVYDETIA-----QEMEGEDEFKEYFEEG-KPPKVLITTSKRAR 142
Query: 65 FRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLS 124
+ L ++P S + ++ + + ++C ++ + KK+ +
Sbjct: 143 GQAYDFADLLYDIIPGSEFKKRV-GDFTMTQIAKMCAERDYTDLVVINEDKKKVNGLTFI 201
Query: 125 NSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGT 184
+ PEGP+ F V ++ E+K G P L + R + L +F
Sbjct: 202 HLPEGPTMYFSVSSLKMPKEIKGHGRSTT-HIPELILNNFSTRLG--KTVGRLFQSMFPQ 258
Query: 185 PRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIKIFKGSF 241
+ T + I+FR ++ + + L E+GP+F L L ++ +G
Sbjct: 259 QPE-----FVGRQVVTLHNQRDWIFFRRHRYVFKNEERVGLQELGPQFTLRLRRLQRGI- 312
Query: 242 GGPTLYENPHYQSPNMHRRMI 262
G +E+ + + +
Sbjct: 313 RGEVEWEHRSAMDKDKKKFHL 333
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
Length = 290
Score = 240 bits (608), Expect = 2e-62
Identities = 39/268 (14%), Positives = 96/268 (35%), Gaps = 19/268 (7%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGK-WKNKERVLIFS 59
++ K L E + K + + E + + R+++ +
Sbjct: 36 LAQGKPLPKELAEDESLQKDFRYDQSLKES---EEADDLQVDDEYAATSGIMDPRIIVTT 92
Query: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
SR + R ++++ L P++ + + + + + C+ + +
Sbjct: 93 SRDPSTRLSQFAKEIKLLFPNAVRLNRGN--YVMPNLVDACKKSGTTDLVVLHEHRGVPT 150
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
+ +S+ P GP+A+F + N+ ++ +GN P L FD + +L
Sbjct: 151 SLTISHFPHGPTAQFSLHNVVMRHDIINAGNQ-SEVNPHLIFDNFTTALG--KRVVCILK 207
Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII--EEDAALVEIGPRFVLNLIKIF 237
+F + + + TF+ + I R + + E + E+GPRF + L ++
Sbjct: 208 HLFNAGP-----KKDSERVITFANRGDFISVRQHVYVRTREGVEIAEVGPRFEMRLFELR 262
Query: 238 KGSF---GGPTLYENPHYQSPNMHRRMI 262
G+ ++ + + +
Sbjct: 263 LGTLENKDADVEWQLRRFIRTANKKDYL 290
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
Length = 394
Score = 231 bits (585), Expect = 8e-60
Identities = 46/276 (16%), Positives = 104/276 (37%), Gaps = 25/276 (9%)
Query: 3 AYKRKRGSLPEVA--TNTKKAKKQLAG--SEQEATAGE-EFIVPPPVSEGKWKN--KERV 55
R++ +P T +K + ++ E + + ++ + +V
Sbjct: 128 RRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKV 187
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI + +TR +L + P++ K+ K + + + E + + +
Sbjct: 188 LITFADNPVTKTRKFGLELSRIFPNA--LVKIRNKSSVKKICKSAEREEFTDVVIVNEDR 245
Query: 116 KQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLK 175
++ + + + P GP+A F + N+ +++K + RP + + R +
Sbjct: 246 RKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLG--LTVG 303
Query: 176 ELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE----EDAALVEIGPRFVL 231
+L +F H + TF + I+FR+++ + L E+GPRF L
Sbjct: 304 RMLGALF-----HHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTL 358
Query: 232 NLIKIFKGSFG---GPTLYE--NPHYQSPNMHRRMI 262
L + +G+F G + N + + R +
Sbjct: 359 KLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
>ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae]
sp|P38805|YHO8_YEAST HYPOTHETICAL 35.1 KDA PROTEIN IN NAM8-GAR1 INTERGENIC REGION
pir||S46718 hypothetical protein YHR088w - yeast (Saccharomyces cerevisiae)
gb|AAB68926.1| (U00060) Yhr088wp [Saccharomyces cerevisiae]
Length = 295
Score = 230 bits (582), Expect = 2e-59
Identities = 38/272 (13%), Positives = 85/272 (30%), Gaps = 23/272 (8%)
Query: 4 YKRKRGSLPEVAT------NTKKAKKQLAGSEQEAT----AGEEFIVPPPVSEGKWKNKE 53
+++ E + + T +
Sbjct: 34 RRKRAKEERENPELREQRLKENVTQTIENTRVYDETINKEVEGDEDDLMRYFNSNSNEPP 93
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
++ + ++ L ++P+ K KL ++++C +N +
Sbjct: 94 KIFLTTNVNAKKSAYEFANILIEILPN-VTFVKRKFGYKLKEISDICIKRNFTDIVIINE 152
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
KK+ + + PEGP+ F + + + ++ G P L + R Q
Sbjct: 153 DKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTS-HIPELILNNFQTRLGQ--T 209
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEED---AALVEIGPRFV 230
+ L I + T + I+FR ++ + +D L E+GP+F
Sbjct: 210 VGRLFQSILPQNPD-----IEGRQVITLHNQRDYIFFRRHRYVFKDNERVGLQELGPQFT 264
Query: 231 LNLIKIFKGSFGGPTLYENPHYQSPNMHRRMI 262
L L ++ +G T +E+ + +
Sbjct: 265 LKLKRLQRGIKE-ETEWEHKPEMDKEKKKFYL 295
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
F44G4.1 (GB:Z49910) and several yeast hypothetical
proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
region (SP:P38805) [Arabidopsis thaliana]
Length = 434
Score = 224 bits (568), Expect = 9e-58
Identities = 51/302 (16%), Positives = 96/302 (30%), Gaps = 58/302 (19%)
Query: 3 AYKRKRGSLPEV-------------ATNTKKAKKQLAGSEQE-----ATAGEEFIVPP-P 43
A +++ L E K E + E F
Sbjct: 69 AAEKRALELGEEVTIWRSFFRDFLKPPQKMIPKTIENTRESDETVCRPDDEELFADIDAD 128
Query: 44 VSEGKWKNK--ERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCE 101
+ + +VL+ + R + R L+ +L S++P+S + + L + E
Sbjct: 129 EFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHYQKR--GTYDLKKIVEYAT 186
Query: 102 MKNCNKCIYFEAKKKQD-------LYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKG 154
K+ I +++ + + P GP+A F + N+ ++K GN
Sbjct: 187 KKDFTSLIVVHTNRREPAFAISYVDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNPTS- 245
Query: 155 SRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQ 214
+P L + R + +F + TF + I+FR+++
Sbjct: 246 HQPELVLNNFTTRLGN--RVGRFFQSLFPPDPN-----FRGRRVVTFHNQRDFIFFRHHR 298
Query: 215 IIEEDAA--------------LVEIGPRFVLNLIKIFKGSFG---GPTLYENP---HYQS 254
I E L E GPRF L L+ + G+F G + +
Sbjct: 299 YIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKVKSPEMD 358
Query: 255 PN 256
+
Sbjct: 359 TS 360
>dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus]
Length = 306
Score = 205 bits (519), Expect = 5e-52
Identities = 38/260 (14%), Positives = 91/260 (34%), Gaps = 22/260 (8%)
Query: 24 QLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSL-MPHSR 82
++ +N + ++ N +++D+ +L P+
Sbjct: 2 DALDKVRKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGV 61
Query: 83 AETKMDRKDKLFVVNEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAK 133
K K+ + + +C+ ++ KK+ + + + +
Sbjct: 62 LYKK---KNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIE 118
Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQ 192
++ +L ++K + C +G++P+L F FD + LK LL F P
Sbjct: 119 LGIEKFVSLKDIK-TSKCPEGTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRL 177
Query: 193 PFVDHIFTFSIADNRIWFRNYQIIEED-------AALVEIGPRFVLNLIKIFKGSFGGPT 245
++++ F+ + +++FR+Y+++ + L E+GP L + + S
Sbjct: 178 AGLEYVLHFTALNGKVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYK 237
Query: 246 LYENPHYQSPNMHRRMIRLA 265
L R+ I
Sbjct: 238 LSMKVPKALKPKKRKNISQD 257
>dbj|BAB10077.1| (AB010069) contains similarity to RNA binding
protein~gene_id:MAC9.8 [Arabidopsis thaliana]
Length = 346
Score = 201 bits (507), Expect = 1e-50
Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 34/251 (13%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
M +K + S KK VS + +FS
Sbjct: 1 MGRFKNNKKSRVIGKPIAKK-------------------NQEDVSHVTGDKIPKSFVFSR 41
Query: 61 RGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
+ + L DLR LM P++ K +++ L V + +K L
Sbjct: 42 MKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLML-SKTASSL 100
Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAFDREPQYAL 173
+ ++ +P+GP+ F + +++ L S P++ +E L
Sbjct: 101 SLRVARTPQGPTLTFKIHQYSLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKL 160
Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALVEIGPRFVL 231
+ IF + + + + I FR+Y I + + +FV
Sbjct: 161 ATIMFQNIFPAIDINTVKLSTCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQ 220
Query: 232 N-----LIKIF 237
N L +
Sbjct: 221 NHQVPDLRNLQ 231
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 198 bits (500), Expect = 9e-50
Identities = 41/241 (17%), Positives = 88/241 (36%), Gaps = 22/241 (9%)
Query: 24 QLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSL-MPHSR 82
+ +N + ++ N +++D+ +L P+
Sbjct: 2 DTLDRVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGV 61
Query: 83 AETKMDRKDKLFVVNEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAK 133
K K+ + + +C+ ++ KK+ + + + +
Sbjct: 62 LYKK---KNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIE 118
Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQ 192
++N +L ++K S C +G++P+L F FD Y LK LL F P
Sbjct: 119 LGIENFVSLKDIKNS-KCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRL 177
Query: 193 PFVDHIFTFSIADNRIWFRNYQIIEED-------AALVEIGPRFVLNLIKIFKGSFGGPT 245
++++ F+ + +I+FR+Y+++ + L E+GP L L + S
Sbjct: 178 AGLEYVLHFTALNGKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYK 237
Query: 246 L 246
L
Sbjct: 238 L 238
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 192 bits (484), Expect = 6e-48
Identities = 43/227 (18%), Positives = 89/227 (38%), Gaps = 22/227 (9%)
Query: 38 FIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSL-MPHSRAETKMDRKDKLFVV 96
+N + ++ N +++D+ +L P+ K K+
Sbjct: 5 KRFLEKREPKLNENIKNAMLIKGGNANATVTQVLKDVCALKKPYGVLYKK---KNVTRPF 61
Query: 97 NEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKM 147
+ + +C+ ++ KK+ + + + + + ++N +L ++K
Sbjct: 62 EDQTSLELLSKKSDCSLFMFGSYNKKRPNNLVIGHMYDYHVLDMIELGIENFVSLKDIKN 121
Query: 148 SGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN 206
S C +G++P+L F F+ Y LK LLT F P ++++ F+ +
Sbjct: 122 S-KCPEGTKPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAGLEYVLHFTALNG 180
Query: 207 RIWFRNYQIIEED-------AALVEIGPRFVLNLIKIFKGSFGGPTL 246
+I+FR Y+++ + L EIGP L L + S TL
Sbjct: 181 KIYFRRYKLLLKKSGCRTPRIELEEIGPSLNLVLRRTHLASDDLYTL 227
>emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sapiens]
Length = 794
Score = 188 bits (474), Expect = 8e-47
Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 10/181 (5%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+F+ R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPAF 165
+K + ++Y L P GP+ F V+ + ++ S P+L +
Sbjct: 89 -SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFG 147
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN--RIWFRNYQIIEEDAALV 223
L+ + +F + H + + + + FR+Y I
Sbjct: 148 PHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGAS 207
Query: 224 E 224
Sbjct: 208 R 208
Score = 35.3 bits (81), Expect = 1.2
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens]
Length = 473
Score = 177 bits (445), Expect = 2e-43
Identities = 28/181 (15%), Positives = 58/181 (31%), Gaps = 10/181 (5%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+F+ R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPAF 165
+K + ++Y L P GP+ F V + ++ S P+L +
Sbjct: 89 -SKTETNVYFKLMRLPGGPTLTFQVLQYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFG 147
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN--RIWFRNYQIIEEDAALV 223
L+ + +F + H + + + + FR+Y I
Sbjct: 148 PHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGAS 207
Query: 224 E 224
Sbjct: 208 R 208
Score = 33.3 bits (76), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>ref|NP_064615.1| peter pan (Drosophila) homolog; second-step splicing factor 1 [Homo
sapiens]
emb|CAB99252.1| (AJ292529) suppressor of sterile four 1 [Homo sapiens]
Length = 473
Score = 177 bits (445), Expect = 3e-43
Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 10/181 (5%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+F+ R L D+R +M P + + ++ +K+ L V +
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPAF 165
+K + ++Y L P GP+ F V+ + ++ S P+L +
Sbjct: 89 -SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFG 147
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN--RIWFRNYQIIEEDAALV 223
L+ + +F + H + + + + FR+Y I
Sbjct: 148 PHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGAS 207
Query: 224 E 224
Sbjct: 208 R 208
Score = 33.3 bits (76), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 270 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 298
>ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae]
sp|P36160|YK61_YEAST HYPOTHETICAL 39.6 KDA PROTEIN IN MTD1-NUP133 INTERGENIC REGION
pir||S38159 hypothetical protein YKR081c - yeast (Saccharomyces cerevisiae)
emb|CAA81632.1| (Z27116) ORF YKR401 [Saccharomyces cerevisiae]
emb|CAA82160.1| (Z28306) ORF YKR081c [Saccharomyces cerevisiae]
Length = 344
Score = 173 bits (437), Expect = 2e-42
Identities = 46/264 (17%), Positives = 87/264 (32%), Gaps = 32/264 (12%)
Query: 31 EATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRK 90
+ +N ++ L + N +M DL +L + +RK
Sbjct: 6 KPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSAL--KKPDMKRFNRK 63
Query: 91 DKLFVVNEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPE---GPSAKFLVQ-NIH 140
+ + ++ E +C+ + + KK+ M + + +V N
Sbjct: 64 NDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFK 123
Query: 141 TLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIF 199
L++ K G +P+ +F AFD P Y +K L F + + H+
Sbjct: 124 LLSDFKK-LTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVI 182
Query: 200 TFSIADNR--------IWFRNYQI----------IEEDAALVEIGPRFVLNLIKIFKGSF 241
+ +I + + FR Y++ LVEIGPR + +I S
Sbjct: 183 SMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSP 242
Query: 242 GGPTLYENPHYQSPNMHRRMIRLA 265
T Q ++ + L
Sbjct: 243 DMVTEAHKKPKQLEMKTKKNVELD 266
>gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melanogaster]
Length = 289
Score = 161 bits (404), Expect = 1e-38
Identities = 36/227 (15%), Positives = 79/227 (33%), Gaps = 25/227 (11%)
Query: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCE------MKNCNKCIYFEA 113
R + M+DL++L ++RK+ + ++ + +
Sbjct: 6 GRKCGGNVKLCMKDLQAL--KKPLVKVLNRKNDITPFDDPSSLEFLTMKNDAALFTFGST 63
Query: 114 KKKQDLYMWLSNSPEG---PSAKFLVQNIHTLAELKM--SGNCLKGSRPILSFDP-AFDR 167
KK+ + L E + ++ ++E K G C+ +P L F+ + +
Sbjct: 64 SKKRPDNIILGRIFENEVLDMFELGIKRYQAISEFKNEKIGACV---KPCLVFNGPKWAQ 120
Query: 168 EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR-IWFRNYQIIEED------- 219
+ L+ L F + ++H+ +F++ D+ I R+Y+I+ +
Sbjct: 121 TEELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDDMNILMRSYRILLKKSGQRTPR 180
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
L EIGP ++ + S Q ++ I
Sbjct: 181 IELEEIGPSADFSIRRTKIASEDLYKQARKQPKQLKVGKKKNISTDA 227
>gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanogaster]
Length = 460
Score = 158 bits (398), Expect = 7e-38
Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 14/192 (7%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+ L D R +M P + + + R +++ + + + F
Sbjct: 28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAF 165
Q L + P GPS F V ++ +M N P++ +
Sbjct: 88 NKASTQ-LSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFS 146
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALV 223
L+ +F + + + FS + + R+Y + L
Sbjct: 147 GDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGL- 205
Query: 224 EIGPRFVLNLIK 235
R V ++K
Sbjct: 206 ---KRAVQKIVK 214
Score = 34.5 bits (79), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR + LIKI +G G LY
Sbjct: 268 IKLHEIGPRLTMQLIKIEEGLLTGEVLYH 296
>gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces cerevisiae
hypothetical protein YKR081c (SP:P36160) [Caenorhabditis
elegans]
Length = 297
Score = 157 bits (395), Expect = 2e-37
Identities = 37/261 (14%), Positives = 83/261 (31%), Gaps = 31/261 (11%)
Query: 28 SEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFR--TRHLMQDLRSLMPHSRAET 85
++ + V + +N ++ L RG H M DL + T
Sbjct: 3 RVEKIKTKKGKRVLVNRASKTVENDKKAL--FCRGAKTNEIISHAMMDLFDM--KKPLTT 58
Query: 86 KMDRKD------KLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLV 136
KMD+ + + + + + KK+ + + +G A+ +
Sbjct: 59 KMDKHNPYHLFEDETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRI 118
Query: 137 QNIHTLAEL---KMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQ 192
+ + + KM+ GS+P + + AF+ + + L+ F P+
Sbjct: 119 TSYKSSSNFEAAKMTL----GSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRL 174
Query: 193 PFVDHIFTFSIADNR-IWFRNYQIIEED-------AALVEIGPRFVLNLIKIFKGSFGGP 244
++ + F+ D + R Y+ + + L E+GP +++
Sbjct: 175 EGLETVIVFTALDETNLALRVYRPMLKKSATATPRVELAEMGPSISFEVMRKKLADDALF 234
Query: 245 TLYENPHYQSPNMHRRMIRLA 265
L R+ +
Sbjct: 235 KLACKKPKALMKKRRKNLSED 255
>gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster]
Length = 460
Score = 157 bits (395), Expect = 2e-37
Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 14/192 (7%)
Query: 53 ERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
+ L D R +M P + + + R +++ + + + F
Sbjct: 28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIQDFVCLSSFFHVSHMGIF 87
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILSFDPAF 165
Q L + P GPS F V ++ +M N P++ +
Sbjct: 88 NKASTQ-LSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFS 146
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNR--IWFRNYQIIEEDAALV 223
L+ +F + + + FS + + R+Y + L
Sbjct: 147 GDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGL- 205
Query: 224 EIGPRFVLNLIK 235
R V ++K
Sbjct: 206 ---KRAVQKIVK 214
Score = 34.5 bits (79), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR + LIKI +G G LY
Sbjct: 268 IKLHEIGPRLTMQLIKIEEGLLTGEVLYH 296
>gb|AAF39738.1|AC005935_5 (AC005935) RNA Binding Protein 1 [Leishmania major]
gb|AAF43468.1|AC012381_4 (AC012381) RNA Binding Protein 1 [Leishmania major]
Length = 374
Score = 151 bits (379), Expect = 1e-35
Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 18/212 (8%)
Query: 50 KNKERVLIFSSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDK-LFVVNEVCEMKNCNK 107
K + +I + R LM + R++ P S K+ K+K L V + +
Sbjct: 22 KRTPKSIIIYRGEVGIHVRSLMHEWRNVFLPWS--SKKLHGKNKSLKDFLAVAATFSASH 79
Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLK-------GSRPILS 160
F A + + + GP+ F V + E+ PI+
Sbjct: 80 LQLFTAPSQG-TSLRIMRFFNGPTLSFRVLSFTLHKEIVAKQRRPVAVDRAAWEVAPIVV 138
Query: 161 FDPAFDREPQYA----LLKELLTQIFGTPRYHPRSQPFVDHIFTFSI--ADNRIWFRNYQ 214
+ + + LL +F + + I F ++ + R+Y
Sbjct: 139 LNNFTHPDLAHRAEVPLLTATFKALFPSLNVQTIQSSEIQRICLFHYDHVEHVVEVRHYY 198
Query: 215 IIEEDAALVEIGPRFVLNLIKIFKGSFGGPTL 246
I + + + + N G+
Sbjct: 199 INARTVGVTKTVKKLLENRRPTKLGTLESIDE 230
Score = 35.3 bits (81), Expect = 1.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 210 FRNYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
FR ++ L EIGPR L L K+ G GG +Y
Sbjct: 254 FRQHREQCR-VKLQEIGPRMTLQLSKVENGFAGGEVIYH 291
>pir||T39206 hypothetical protein SPAC926.08c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB54156.1| (AL110469) hypothetical protein [Schizosaccharomyces pombe]
Length = 317
Score = 150 bits (376), Expect = 3e-35
Identities = 29/258 (11%), Positives = 68/258 (26%), Gaps = 31/258 (12%)
Query: 31 EATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTR-HLMQDLRSLMPHSRAETKMDR 89
+ + IF + ++ D+ +L +
Sbjct: 6 KPKNARTKRALEKREPKL-VEGAKTAIFLRGNATSQISLDVLGDIHAL--KKPFSVNFQK 62
Query: 90 KDKLFVVNEV------CEMKNCNKCIYFEAKKKQDLYMWLSNSPEG---PSAKFLVQNIH 140
K+ + + E + + KK+ + + + N
Sbjct: 63 KNNILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVNYK 122
Query: 141 TLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIF 199
++ + + G++P++ F FD P Y +K L F + ++
Sbjct: 123 SIQSFSATP-IVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDSAGLSYVI 181
Query: 200 TFS---IADNR------IWFRNY-------QIIEEDAALVEIGPRFVLNLIKIFKGSFGG 243
S ++ + FR Y + L E+GPR N+ ++
Sbjct: 182 VVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRRVQPAESDV 241
Query: 244 PTLYENPHYQSPNMHRRM 261
++
Sbjct: 242 LEEALKKPKTQEPKPKKN 259
>gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumocystis carinii f. sp.
carinii]
Length = 277
Score = 147 bits (369), Expect = 2e-34
Identities = 39/261 (14%), Positives = 80/261 (29%), Gaps = 58/261 (22%)
Query: 16 TNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERV-------LIFSSRGINFRTR 68
T K +K+ E + + E + K +R ++ + T
Sbjct: 62 TIESKREKKEKNFV-----EENKGIYEEIREKELKRIKRSGLYAKDFFLYQKKNRQKNTY 116
Query: 69 HLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPE 128
++ L P F++ K + + + P
Sbjct: 117 FFAKEWPGLFP------------------------------IFQSWLK--DSLIIIHLPS 144
Query: 129 GPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYH 188
GPS F + +I + + G P L + ++ + +F
Sbjct: 145 GPSFYFTISSITPTSCIYRHGRATS-HIPELIINNFTTYLG--LTVENMFRSLFP----- 196
Query: 189 PRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRFVLNLIKIFKGSFG--- 242
++ + T + I+ R ++ I + +L E+GPRF L L ++ +G
Sbjct: 197 TQADFEGRQVVTIHNQRDFIFIRRHRYIFKNDIKVSLQELGPRFTLKLRRLQRGIHDRHA 256
Query: 243 GPTLYENPHYQSPNMHRRMIR 263
+YE + N R +
Sbjct: 257 DNVVYEYKPGEESNRTRFWLS 277
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
Length = 361
Score = 142 bits (356), Expect = 6e-33
Identities = 29/183 (15%), Positives = 63/183 (33%), Gaps = 15/183 (8%)
Query: 56 LIFSSR--GINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFE 112
++ S + L +DLR +M PH+ K + +K+ + +
Sbjct: 1 MVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVL- 59
Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAEL------KMSGNCLKGSRPILS---FDP 163
++ + + + +P GPS F + ++ S + P+L F+
Sbjct: 60 SRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQ 119
Query: 164 AFDRE-PQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN-RIWFRNYQIIEEDAA 221
++ P ALL +F + V + + D+ I R++ I +
Sbjct: 120 NSSKDSPHEALLTTTFQNMFPPISVQHTNINSVKRVLLLNRRDDGYIDLRHFIISTKPVG 179
Query: 222 LVE 224
+
Sbjct: 180 ISR 182
Score = 36.8 bits (85), Expect = 0.42
Identities = 16/51 (31%), Positives = 22/51 (42%), Gaps = 3/51 (5%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE---NPHYQSPNMHRRMIRLATA 267
L+EIGPR L LIKI + + GG LY + + + A
Sbjct: 259 IKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNFHEQSRA 309
>ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerevisiae]
sp|P38789|SSF1_YEAST SSF1 PROTEIN
pir||S46700 SSF1 protein - yeast (Saccharomyces cerevisiae)
gb|AAB68379.1| (U00061) Ssf1p [Saccharomyces cerevisiae]
gb|AAA79980.1| (U18113) Ssf1p [Saccharomyces cerevisiae]
Length = 453
Score = 138 bits (346), Expect = 9e-32
Identities = 34/204 (16%), Positives = 71/204 (34%), Gaps = 29/204 (14%)
Query: 52 KERVLIF----SSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCN 106
+ ++ +S N L++D R +M PH+ + K + +KL +C
Sbjct: 22 IPKSMVIRVGQTS-LANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVT 80
Query: 107 KCIYFE-AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGS-------RPI 158
F ++K ++ + ++ +P+GP+ F V + ++K K P+
Sbjct: 81 HLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPL 140
Query: 159 LSFDPAFD--REPQ-------YALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN--- 206
L + R + ++ + IF S + + F I +
Sbjct: 141 LVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRV--FMINKDRET 198
Query: 207 -RIWFRNYQIIEEDAALVEIGPRF 229
I R+Y I + + R
Sbjct: 199 GEISMRHYFIDIREVEISRNLKRL 222
Score = 34.9 bits (80), Expect = 1.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
+ L E+GPR L L+KI +G G L+ +S + + + A
Sbjct: 324 KAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAA 373
>dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~similar to unknown
protein [Arabidopsis thaliana]
Length = 314
Score = 138 bits (346), Expect = 1e-31
Identities = 33/238 (13%), Positives = 77/238 (31%), Gaps = 23/238 (9%)
Query: 32 ATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD 91
G+ V + + ++ LI + +M +L L ++
Sbjct: 7 PKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRYSRRNEN 66
Query: 92 KLFVVNE--------VCEMKNCNKCIYFEAKKKQDLYMWLSNSPE---GPSAKFLVQNIH 140
+ + +C+ +Y KK+ + L + + ++N
Sbjct: 67 -IRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVGIENFK 125
Query: 141 TLAELK--MSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDH 197
+L +G++P + F F+ + LKE+LT +F + +D
Sbjct: 126 SLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNLTGLDR 185
Query: 198 IFTFS-IADNRIWFRNYQIIEED-------AALVEIGPRFVLNLIKIFKGSFGGPTLY 247
+ S I+ +++ + + + LVE+GP L + + +
Sbjct: 186 AYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLMKEA 243
>pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegans
gb|AAB97575.1| (AF043700) contains similarity to human RNA-binding protein FUS/TLS
(SW:Q28009) [Caenorhabditis elegans]
Length = 608
Score = 136 bits (341), Expect = 3e-31
Identities = 29/233 (12%), Positives = 76/233 (32%), Gaps = 12/233 (5%)
Query: 1 MSAYKRKRGSLPEVATN-TKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFS 59
M K++R S N ++K +++ + E + + L+
Sbjct: 3 MKKGKKQRKSGAHNRGNVDALSQKDALYHQEKFVKKLQKQKFLENKEIELARQPHCLVIH 62
Query: 60 SRGINFRTRHLMQDLR-SLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQD 118
+ + L DLR + P++ K+ +++ + + + +
Sbjct: 63 RGDVGKYVKGLESDLRNLVEPNTAKNLKILKRNNIKDFIVNGAVLGVTNMMVLTSSDAS- 121
Query: 119 LYMWLSNSPEGPSAKFLVQNIHTLAELKMSGN------CLKGSRPILSFDPAFD-REPQY 171
L + + +GP+ F V+ + L S P++ + D +
Sbjct: 122 LQLRMMRFSQGPTLSFKVKQYSLARHVVNCQKRPVATDKLFKSSPLVVMNGFGDGTQKHL 181
Query: 172 ALLKELLTQIFGTPRYHPRSQPFVDHI--FTFSIADNRIWFRNYQIIEEDAAL 222
+L++ + +F + + ++ + I R++ I + L
Sbjct: 182 SLVQTFIQNMFPSINVDTIQLGNLKRCLIVSYDEETDEIQMRHFAIRVVASGL 234
Score = 38.0 bits (88), Expect = 0.15
Identities = 14/30 (46%), Positives = 16/30 (52%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYEN 249
L EIGPR L L+KI +G G LY
Sbjct: 338 VRLHEIGPRLTLELVKIEEGIDEGEVLYHK 367
>ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyces cerevisiae]
sp|Q12153|SSF2_YEAST SSF2 PROTEIN
pir||S50248 SSF2 protein - yeast (Saccharomyces cerevisiae)
gb|AAA79981.1| (U18114) Ssf2p [Saccharomyces cerevisiae]
gb|AAB64748.1| (U28374) Ssf2p [Saccharomyces cerevisiae]
Length = 453
Score = 135 bits (338), Expect = 9e-31
Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 29/204 (14%)
Query: 52 KERVLIF----SSRGINFRTRHLMQDLRSLM-PHSRAETKMDRKDKLFVVNEVCEMKNCN 106
+ ++ +S N L++D R +M PH+ + K + +KL +C
Sbjct: 22 IPKSMVIRVGQTS-LANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVT 80
Query: 107 KCIYFE-AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGS-------RPI 158
F ++K ++ + ++ +P+GP+ F V + ++K K P+
Sbjct: 81 HLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPL 140
Query: 159 LSFDPAFDR---------EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADN--- 206
L + ++ + IF S + I F I +
Sbjct: 141 LVLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRI--FMINKDRET 198
Query: 207 -RIWFRNYQIIEEDAALVEIGPRF 229
I R+Y I + + R
Sbjct: 199 GEISMRHYFIDIREVEISRNLKRL 222
Score = 34.5 bits (79), Expect = 2.0
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
+ L E+GPR L L+KI G G L+ +S + + + A
Sbjct: 324 KAIKLTELGPRLTLKLVKIEDGICSGKVLHHEFVQKSSEEIKALEKRHAA 373
>emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta]
Length = 186
Score = 122 bits (304), Expect = 9e-27
Identities = 33/186 (17%), Positives = 68/186 (35%), Gaps = 17/186 (9%)
Query: 55 VLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAK 114
+I +S+ + ++ L+ + R + K K + + KN N IY
Sbjct: 5 SIITTSKKPSKTLLKILHLLKKYLITPRYYKR--NKFKFRHLMIYLKRKNINNMIYLFEN 62
Query: 115 KKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALL 174
+ ++ + N E KF + N+ + + P + + + +
Sbjct: 63 NNR-YFVSIVNFQENIHIKFGINNLLITSRISSIIYKD---YPEIIYLNF--KAQHEIYI 116
Query: 175 KELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE----EDAALVEIGPRFV 230
+++LTQI + S + I+FR+++ I D + EIGPR
Sbjct: 117 QKVLTQIL-----YQVSPLTNRELLCIYSNKGIIYFRSFRYIFSKNLRDVKIQEIGPRLN 171
Query: 231 LNLIKI 236
++ I
Sbjct: 172 FKILNI 177
>pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (strain Orsay)
emb|CAB49198.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 224
Score = 120 bits (300), Expect = 2e-26
Identities = 27/172 (15%), Positives = 50/172 (28%), Gaps = 24/172 (13%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI +S RTR DL + P+S T+ K + + + + + K
Sbjct: 3 LITTSHRPTRRTRSFGHDLERVFPNSLYMTR--GKKTIQELLMEAYDRGYERLLIINVWK 60
Query: 116 KQDLYMWLSNS-PE--GPSAKFLVQNIHTLAELKMSG-NCLKGSRP------------IL 159
L M P+ G + + E+ G N ++ P L
Sbjct: 61 GNPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHL 120
Query: 160 SFDPAFDREPQYALLKELLTQIFG-TPRYHPRSQPFVDH-----IFTFSIAD 205
+F F + + +Y+ ++ + F D
Sbjct: 121 AFAQVFSELTTGKFVPRGDKSLLSIADKYNTDVLAVIERHPRGIVVNFYRLD 172
>pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii
dbj|BAA31023.1| (AP000007) 334aa long hypothetical protein [Pyrococcus horikoshii]
Length = 224
Score = 119 bits (298), Expect = 4e-26
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 24/172 (13%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
LI +S RTR DL ++P+S T+ K + + + + + K
Sbjct: 3 LITTSHRPTRRTRSFGHDLERVIPNSLYLTR--GKKTIQELLMEAYDRGYERLLIINVWK 60
Query: 116 KQDLYMWLSNS-PE--GPSAKFLVQNIHTLAELKMSG-NCLKGSRPILS----------- 160
L M PE G + + E+ G N ++ P++
Sbjct: 61 GNPLKMTFIKVHPEDWGYLGYLYLHGVKLQREMGFKGLNPIREDMPLVITTAKRVGLDHL 120
Query: 161 -FDPAFDREPQYALLKELLTQIFG-TPRYHPRSQPFVDH-----IFTFSIAD 205
F F + + RY+ ++ + F D
Sbjct: 121 AFAQVFSELTTGKFVPRGDKSLLSIADRYNTDVLAVIERHPRGIVINFYRLD 172
>ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens]
ref|XP_003882.1| hypothetical protein FLJ11100 [Homo sapiens]
dbj|BAA92003.1| (AK001962) unnamed protein product [Homo sapiens]
Length = 129
Score = 118 bits (294), Expect = 1e-25
Identities = 86/131 (65%), Positives = 95/131 (71%), Gaps = 11/131 (8%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEE---------FIVPPPVSEGKWKN 51
M+A KRKR A KK K+ +E A +P PV +GKWKN
Sbjct: 1 MAATKRKR--RGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKN 58
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
KER+LIFSSRGINFRTRHLMQDLR LMPHS+A+TKMDRKDKLFV+NEVCEMKNCNKCIYF
Sbjct: 59 KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYF 118
Query: 112 EAKKKQDLYMW 122
EAKKKQDLYMW
Sbjct: 119 EAKKKQDLYMW 129
>emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans]
Length = 97
Score = 108 bits (269), Expect = 1e-22
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE--- 218
+ R + L IF + T + I+FR ++ I
Sbjct: 2 NNFNSRLG--KTVGRLFQSIFPHKPE-----LQGRQVITLHNQRDYIFFRRHRYIFRNEE 54
Query: 219 DAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMI 262
L E+GP+F L L ++ KG G ++E+ + + +
Sbjct: 55 KVGLQELGPQFTLKLRRMQKG-VRGDVVWEHRPDMERDKKKFYL 97
>dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 179
Score = 107 bits (266), Expect = 2e-22
Identities = 24/151 (15%), Positives = 46/151 (29%), Gaps = 23/151 (15%)
Query: 130 PSAK--FLVQNIHTLAELKMSGNCLKGSRPILSFDP-AFDREPQYALLKELLTQIFGTPR 186
PS F + N+ + + G++P++ F FD P Y +K L F
Sbjct: 14 PSIYKTFNLTNVFIVQATP----IVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEP 69
Query: 187 YHPRSQPFVDHIFTFS---IADNR------IWFRNY-------QIIEEDAALVEIGPRFV 230
+ ++ S ++ + FR Y + L E+GPR
Sbjct: 70 IQKLDSAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRID 129
Query: 231 LNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
N+ ++ ++
Sbjct: 130 FNIRRVQPAESDVLEEALKKPKTQEPKPKKN 160
>emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
emb|CAC23146.1| (AL512964) hypothetical [Sulfolobus solfataricus]
Length = 170
Score = 83.2 bits (204), Expect = 4e-15
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
R++I SSR + RTR+ + L ++P S T+ + + E ++ A
Sbjct: 7 RIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKI--EIFERAINLGALYLLFVLA 64
Query: 114 KKKQDLYMWLSNSPEGPSAK--FLVQNIHTLAELKMSGNCLKGS 155
K L + + + E S K F + + ++ +S N +KG
Sbjct: 65 KNGNPLRIIVYDL-ESLSIKYFFKLSGLSLPSDYNVSLNQIKGH 107
>pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (strain K1)
dbj|BAA80440.1| (AP000061) 197aa long hypothetical protein [Aeropyrum pernix]
Length = 197
Score = 82.8 bits (203), Expect = 6e-15
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
R+L+ +SR + R R ++DL + +P + T+ + + ++ ++ +
Sbjct: 15 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSMEELAREAIIRGADRIVVVGE 72
Query: 114 KKKQDLYMWLSNSPEGPS-----AKFLVQNIHTLAE 144
++ + + EGP F+V+ + E
Sbjct: 73 RRGNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRE 107
>pir||F69190 conserved hypothetical protein MTH680 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85185.1| (AE000848) conserved protein [Methanothermobacter
thermautotrophicus]
Length = 155
Score = 40.7 bits (95), Expect = 0.026
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
L+ +SR + RTR Q L +M R + K L V +
Sbjct: 2 LLTTSRKPSQRTRSFSQRLSRIMGW-RYINR--GKMSLRDVLIEAR----GPVAVVSERH 54
Query: 116 KQDLYMWL 123
+
Sbjct: 55 GNPARITF 62
>sp|Q58012|Y594_METJA HYPOTHETICAL PROTEIN MJ0594
pir||B64374 hypothetical protein MJ0594 - Methanococcus jannaschii
gb|AAB98595.1| (U67508) M. jannaschii predicted coding region MJ0594
[Methanococcus jannaschii]
Length = 169
Score = 38.8 bits (90), Expect = 0.095
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 56 LIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKK 115
++ +SR + RTR +DL + + + K L + E+ + + K
Sbjct: 2 ILTTSRKPSQRTRSFARDLERTL-NIPYVQR--GKLSLKEIFEIDK-----HVLLIGEFK 53
Query: 116 KQDLYMWLSNSPEGPSAKFLVQNIHTLAEL 145
+ + + + + E+
Sbjct: 54 ANPGTLVVYDVENEKRLSSFIS-VKLQREI 82
>pir||F81276 probable sugar-phosphate nucleotide transferase Cj1329 [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73756.1| (AL139078) putative sugar-phosphate nucleotide transferase
[Campylobacter jejuni]
Length = 341
Score = 34.1 bits (78), Expect = 2.8
Identities = 13/108 (12%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 6 RKRGSLPEVATNTKKAKKQLAGSEQE---ATAGEEFIVPPPVSEGKWKNKERVLIFSSRG 62
+ ++ E + + K + + + + K +I + G
Sbjct: 67 KNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQILSIKSI-SSLLKANPNSIIIMAGG 125
Query: 63 INFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIY 110
+ R + L +D + K+ +K L + + + +N I+
Sbjct: 126 LGSRLKELTKD------TPKPMLKVGKKPILESIIQRLKNQNFENFIF 167
>ref|NP_069935.1| conserved hypothetical protein [Archaeoglobus fulgidus]
pir||A69388 conserved hypothetical protein AF1106 - Archaeoglobus fulgidus
gb|AAB90132.1| (AE001027) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 153
Score = 33.3 bits (76), Expect = 4.3
Identities = 12/84 (14%), Positives = 22/84 (25%), Gaps = 9/84 (10%)
Query: 57 IFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKK 116
+ +SR +TR + L K L + + E K
Sbjct: 4 LTTSRKPGRKTRRFAKVLARFFNWK---YVNRGKLSLEDLAGIAER-----FWIISEVKG 55
Query: 117 QDLYMWLS-NSPEGPSAKFLVQNI 139
+ L + F + N+
Sbjct: 56 NPAILNLYERGEKTLEVSFTLSNV 79
>gb|AAH00535.1|AAH00535 (BC000535) Unknown (protein for MGC:3007) [Homo sapiens]
Length = 251
Score = 32.9 bits (75), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYE 248
L EIGPR L LIK+ +G G ++
Sbjct: 61 VRLTEIGPRMTLQLIKVQEGVGEGKVMFH 89
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.313 0.179 0.477
Lambda K H
0.270 0.0626 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 858832366
Number of Sequences: 618844
Number of extensions: 42542677
Number of successful extensions: 125158
Number of sequences better than 10.0: 629
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 123345
Number of HSP's gapped (non-prelim): 998
length of query: 339
length of database: 195,544,254
effective HSP length: 54
effective length of query: 285
effective length of database: 162,126,678
effective search space: 46206103230
effective search space used: 46206103230
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.0 bits)
S2: 73 (32.4 bits)
Last modified: Feb 2001