BLASTP 2.1.1 [Aug-8-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= xen_Brix
         (339 letters)

Database: nr
           618,844 sequences; 195,544,254 total letters

Searching..................................................

E-value threshold for inclusion in PSI-Blast iteration 2: 0.002 
E-value threshold for inclusion in PSI-Blast iteration 3:



Results of PSI-Blast iteration 1

Distribution of 30 Blast Hits on the Query Sequence




Legend:

- means that the alignment score was below the threshold on the previous iteration

- means that the alignment was checked on the previous iteration


Sequences with E-value BETTER than threshold
Score E Sequences producing significant alignments: (bits) Value
emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schiz... 401 e-111
gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melan... 400 e-110
gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana] 399 e-110
ref|NP_014565.1| Essential nucleolar protein required for biogen... 395 e-109
gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175... 393 e-108
sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHR... 378 e-104
ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens] >g... 195 5e-49
emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora cra... 59 8e-08
gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melan... 52 1e-05
sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN ... 48 2e-04
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CH... 45 0.001
Sequences with E-value WORSE than threshold

ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae] >gi|1730744|sp... 44 0.003
emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapi... 41 0.022
emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis tha... 41 0.028
dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens] 40 0.052
gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma... 39 0.060
gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar... 39 0.063
pir||T39008 probable mating protein - fission yeast (Schizosacch... 39 0.087
pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment) 39 0.093
pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana ... 38 0.16
gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melano... 37 0.22
dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens] 37 0.39
gb|AAD02810.1| (AF062396) protein phosphatase 2A regulatory subu... 37 0.40
gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster] 36 0.66
gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanoga... 36 0.75
sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHR... 34 2.6
gb|AAG52369.1|AC011765_21 (AC011765) putative cytochrome P450; 6... 34 2.6
sp|P07788|COTA_BACSU SPORE COAT PROTEIN A >gi|7475834|pir||F6960... 34 4.0
dbj|BAA22774.1| (AB007638) spore coat proein A [Bacillus subtilis] 34 4.0
pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegan... 33 5.4
Alignments
>emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schizosaccharomyces
           pombe]
          Length = 295

 Score =  401 bits (1021), Expect = e-111
 Identities = 124/287 (43%), Positives = 177/287 (61%), Gaps = 16/287 (5%)

Query: 28  SEQEATAGEEFIVPPPVSEGKWKN--------KERVLIFSSRGINFRTRHLMQDLRSLMP 79
           SE+     +E     PV  G+           K++VL+ SSRG+ +R RHL+ DL S+MP
Sbjct: 10  SERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLVSMMP 69

Query: 80  HSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNI 139
           HS+ ++K+D KD+L+ +NE+ E+ NCN   +FE+++++DLY+ ++ +P GP+ KF V+N+
Sbjct: 70  HSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENL 129

Query: 140 HTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIF 199
           HT+ EL M+GN LKGSRPILSFD  FD  P   ++KELL Q FG P+   RS+PF+D + 
Sbjct: 130 HTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFIDRVC 189

Query: 200 TFSIADNRIWFRNYQIIEED------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQ 253
           T +IAD +IWFRNY+I E +        L+EIGPRFV+ +I I +GSFGGP +Y+N  + 
Sbjct: 190 TLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFV 249

Query: 254 SPNMHRRMIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTEAVF 300
           S  M R  IR    A                   + VIP DP + VF
Sbjct: 250 SSTMVRAAIR--NQAAQRYVNRQESKLERQVRAQQNVIPEDPLDNVF 294
>gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melanogaster]
          Length = 359

 Score =  400 bits (1017), Expect = e-110
 Identities = 135/230 (58%), Positives = 179/230 (77%), Gaps = 2/230 (0%)

Query: 39  IVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNE 98
           +VP    + KW NK+RVL+FS+RGI+ R RHLM+D+++LMPH R E+KM+R   L VVNE
Sbjct: 36  VVPKKARKEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNE 95

Query: 99  VCEMKNCNKCIYFEAKKKQDLYMWLSNS--PEGPSAKFLVQNIHTLAELKMSGNCLKGSR 156
           +CEMK+CNK + FE ++K+DLYMW+SN+    GPSAKFL++NIHT+AELKM+GNCL+GSR
Sbjct: 96  MCEMKHCNKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSR 155

Query: 157 PILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII 216
           P+LSFD  FD  P   LLKEL  Q +  P +HP+SQPFVDH+FTF+  D RIWFRN+QI+
Sbjct: 156 PLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQIL 215

Query: 217 EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
            ED  L E+GPR+V+N +KIF GSF G T++ENP Y SP+  R++++ A 
Sbjct: 216 SEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKAA 265
>gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana]
          Length = 315

 Score =  399 bits (1015), Expect = e-110
 Identities = 122/281 (43%), Positives = 170/281 (60%), Gaps = 14/281 (4%)

Query: 1   MSAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSS 60
           M   ++   ++          ++            E+     P     ++NKE+VL+  S
Sbjct: 1   MGRKRKHSETVTAAPVKDSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTCS 60

Query: 61  RGINFRTRHLMQDLRSLMPHSRAETKMDRK-DKLFVVNEVCEMKNCNKCIYFEAKKKQDL 119
           R INFR RHLM ++ SL+PH + ++K++ K  +   +NE+ E+K  + C++FE +K +DL
Sbjct: 61  RRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDL 120

Query: 120 YMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLT 179
           YMW+  SP GPS KFLV  +HT+ ELK++GN LKGSRP+L+F   F+ +  + LLKE+LT
Sbjct: 121 YMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLT 180

Query: 180 QIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EEDA---------ALVEIG 226
           QIFG P  H +S+P+ DH+F FSI D+ IWFRNYQI     E D           L+E+G
Sbjct: 181 QIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVG 240

Query: 227 PRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
           PRF LN IKIF GSFGG TLYENP Y SPN  R + +   A
Sbjct: 241 PRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKA 281
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
           ribosomal subunit; homologue of BRIX (Biogenesis of
           ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
 pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
           cerevisiae)
 emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
          Length = 291

 Score =  395 bits (1005), Expect = e-109
 Identities = 124/263 (47%), Positives = 164/263 (62%), Gaps = 14/263 (5%)

Query: 48  KWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNK 107
           ++ NK+R L+ SSRG+N+R RHL+QDL  L+PHSR E K+D K  L  +NE+ E+ NCN 
Sbjct: 26  QFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNN 85

Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDR 167
            ++FEA+K QDLY+WLS  P GP+ KF +QN+HT+ EL  +GNCLKGSRP+LSFD  F+ 
Sbjct: 86  VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145

Query: 168 EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----------- 216
            P Y L+KELL   F  P    +S+PF+DH+ +FSI D++IW R Y+I            
Sbjct: 146 SPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEISHSTKNKEEYED 205

Query: 217 -EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAXXXXXXX 275
            EED +LVEIGPRFV+ +I I +GSFGGP +YEN  Y SPN+ R  I+   A        
Sbjct: 206 GEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAA--EEAKSR 263

Query: 276 XXXXXXXXXXXDRPVIPVDPTEA 298
                         V+  DP   
Sbjct: 264 AEAAVERKIKRRENVLAADPLSN 286
>gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175 [Arabidopsis thaliana]
          Length = 320

 Score =  393 bits (999), Expect = e-108
 Identities = 124/262 (47%), Positives = 173/262 (65%), Gaps = 16/262 (6%)

Query: 20  KAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMP 79
           + K+ L G + ++    E      ++   +KNKE+VL+  SR I+FR R LM ++ SL+P
Sbjct: 26  RPKRTLLGWKDKSEGEAEKA--KALTSSGFKNKEKVLVTCSRRISFRYRSLMLNIVSLLP 83

Query: 80  HSRAETKMDRK-DKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQN 138
           H + ++K++ K  K   +NE+ E+KN N C++FE +K +DLYMW+  SP GPS KFLV+ 
Sbjct: 84  HCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRKHKDLYMWMVKSPNGPSVKFLVKA 143

Query: 139 IHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHI 198
           +H + E+K++GN LKGSRP+L+F   FD++  + LLKE+LTQ+FG P+ H +S+P+ DH+
Sbjct: 144 VHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQVFGIPKEHRKSKPYHDHV 203

Query: 199 FTFSIADNRIWFRNYQII----EEDA---------ALVEIGPRFVLNLIKIFKGSFGGPT 245
           F FSI D  IWFRNYQI     E D           L+E+GPRF LN IKIF GSFGGPT
Sbjct: 204 FVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTLIEVGPRFCLNPIKIFAGSFGGPT 263

Query: 246 LYENPHYQSPNMHRRMIRLATA 267
           LYENP Y SPN  R + +   A
Sbjct: 264 LYENPLYVSPNQIRALEKRNKA 285
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
 pir||S44853 K12H4.3 protein - Caenorhabditis elegans
 gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank:  CE5D1 (Z14791),
           CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
           putative [Caenorhabditis elegans]
          Length = 352

 Score =  378 bits (961), Expect = e-104
 Identities = 125/264 (47%), Positives = 184/264 (69%), Gaps = 4/264 (1%)

Query: 2   SAYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSR 61
           SA+++          ++       + ++ +     E           W N+ERVL+  SR
Sbjct: 15  SAHQKMEWEAAGAKDSSSDDSSDESDNDDQPKQATEET---RKRAELWTNRERVLVLCSR 71

Query: 62  GINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYM 121
           G + RTR+LM+D++ L+PH++ ++K+D++  L V+NE+ EMKNC K +YFE++K++D Y+
Sbjct: 72  GADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKVMYFESRKRKDTYL 131

Query: 122 WLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181
           W+SN  +GPS KFLV N+HT+ ELKMSGNCL+ SRP+LSFD AFD++PQ  L+K +L Q 
Sbjct: 132 WMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQT 191

Query: 182 FGTPRYHPRSQPFVDHIFTFSIAD-NRIWFRNYQIIEEDAALVEIGPRFVLNLIKIFKGS 240
            GTP +HPRSQPFVDH+F FS+ + ++IWFRN+QI++E   L E+GPRFVL ++++F GS
Sbjct: 192 LGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGPRFVLEMVRLFAGS 251

Query: 241 FGGPTLYENPHYQSPNMHRRMIRL 264
           F G  LY+NP+Y SPN+ RR  R 
Sbjct: 252 FEGAVLYDNPNYVSPNVIRREHRK 275
>ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens]
 ref|XP_003882.1| hypothetical protein FLJ11100 [Homo sapiens]
 dbj|BAA92003.1| (AK001962) unnamed protein product [Homo sapiens]
          Length = 129

 Score =  195 bits (493), Expect = 5e-49
 Identities = 89/131 (67%), Positives = 99/131 (74%), Gaps = 11/131 (8%)

Query: 1   MSAYKRKRGSLPEVATNTKKAKKQLAGSE----QEATAGEEFI-----VPPPVSEGKWKN 51
           M+A KRKR      A   KK K+    +E    + ATA E        +P PV +GKWKN
Sbjct: 1   MAATKRKRRG--GFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKN 58

Query: 52  KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
           KER+LIFSSRGINFRTRHLMQDLR LMPHS+A+TKMDRKDKLFV+NEVCEMKNCNKCIYF
Sbjct: 59  KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYF 118

Query: 112 EAKKKQDLYMW 122
           EAKKKQDLYMW
Sbjct: 119 EAKKKQDLYMW 129
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
          Length = 295

 Score = 58.8 bits (141), Expect = 8e-08
 Identities = 49/198 (24%), Positives = 88/198 (43%), Gaps = 25/198 (12%)

Query: 54  RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNE----VCEMKNCNKCI 109
           R+L+ +SR  + R     +++R L+P S       R ++  +V E      + +N    +
Sbjct: 85  RILVTTSRDPSSRLGQFSKEIRLLLPTSV------RLNRGNLVLEDLVGAAKAQNLTDVV 138

Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKG----SRPILSFDPAF 165
                +     M +S+ P GP+    + N+   A++  S   +KG    S P L F+  F
Sbjct: 139 LLHEHRGVPTAMTISHFPHGPTLMVSLHNVVLRADIPKS---IKGTVSESYPRLIFE-GF 194

Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFV-DHIFTFSIADNRIWFRNY---QIIEEDAA 221
             +    ++K +L  +F  P   P  +P V + + TF   D+ I  R++   +   +   
Sbjct: 195 STKLGERVVK-ILKHLF--PPREPTQKPNVGNRVITFVNNDDTIEVRHHVYVRTSYDSVE 251

Query: 222 LVEIGPRFVLNLIKIFKG 239
           L E+GPRF +   KI  G
Sbjct: 252 LSEVGPRFTMKPFKITMG 269
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
          Length = 298

 Score = 51.8 bits (123), Expect = 1e-05
 Identities = 44/213 (20%), Positives = 98/213 (45%), Gaps = 19/213 (8%)

Query: 54  RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFE 112
           ++++ +S   + R +  M++LR ++P+++   +M+R + +L  +   C   N    +   
Sbjct: 82  KIMLTTSHNPSSRLKMFMKELRLIIPNAQ---QMNRGNYQLTTLMHACRANNVTDFLIVH 138

Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
             +     + + + P GP+A F + ++    ++   G  +   +P L F+  F       
Sbjct: 139 EHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDIG-HMSEQKPHLIFN-NFKTPIGLR 196

Query: 173 LLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN--YQIIEEDAALVEIGPRFV 230
            +K +L  +F  P+ + +       + +F   ++ I FR+  Y+ + ++  L E+GPRF 
Sbjct: 197 TVK-ILKHLFPVPKENSQ------RVMSFLNHNDSIIFRHHQYKYVNKELELTEVGPRFS 249

Query: 231 LNLIKIFKGSFG----GPTLYENPHYQSPNMHR 259
           L L +I  G+        T + N  Y + +  R
Sbjct: 250 LKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
 pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
           (Schizosaccharomyces pombe)
 emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
          Length = 289

 Score = 47.9 bits (113), Expect = 2e-04
 Identities = 51/219 (23%), Positives = 92/219 (41%), Gaps = 23/219 (10%)

Query: 29  EQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMD 88
           E  AT  E             + + +VL+ +SR  + R     +++R L+P+S       
Sbjct: 60  ESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSY------ 113

Query: 89  RKDKLF-VVNEVCEMKNCNK----CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLA 143
           R ++   VV  + E    N      I  E +   D  + +S+ P GP+  F + N+    
Sbjct: 114 RLNRGNIVVGSLVEAARANDITDIVILHEHRGIPD-GLVISHLPYGPTLSFSLHNVVLRH 172

Query: 144 ELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSI 203
           ++  +G  +  + P L F+    +      +K  L+ +F  P     + P    + TF+ 
Sbjct: 173 DIPNTGT-MSEAYPHLIFENLTSKLG--KRVKTALSALF--PPDPKDTTP---RVVTFAN 224

Query: 204 ADNRIWFRNY---QIIEEDAALVEIGPRFVLNLIKIFKG 239
            D+ I FR++   +   +   L E GPRF + L +I  G
Sbjct: 225 TDDYISFRHHIYAKTGPKQIILSEAGPRFEMKLFEITLG 263
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
 pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
 emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
           domain: PF01945 (Domain of unknown function),
           Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
           comes from this gene [Caenorhabditis elegans]
          Length = 292

 Score = 45.2 bits (106), Expect = 0.001
 Identities = 44/193 (22%), Positives = 86/193 (43%), Gaps = 16/193 (8%)

Query: 54  RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF-E 112
           +++I +SR  + R +   ++++ + P+++   +      +  V +  + ++    I F E
Sbjct: 79  KIVITTSRDPSSRLKMFAKEMKLIFPNAQRINR--GHYDVKQVVQASKAQDSTDLIIFTE 136

Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
            +   D  M + + P GP+A F + N+    ++   G  +    P L FD    +     
Sbjct: 137 TRGNPD-GMLVCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDNLNSKLGHR- 193

Query: 173 LLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEE---DAALVEIGPRF 229
               +L  +F  P+  P S+     I TFS +++ I FR++    E   +  L E GPRF
Sbjct: 194 -FTTILKHLFPVPK--PDSK----RIITFSNSEDYISFRHHVYKTENDGEVELTEAGPRF 246

Query: 230 VLNLIKIFKGSFG 242
            L   +I  G+  
Sbjct: 247 ELKPYQIKLGTLE 259
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
 sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
 pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
 emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
 emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
          Length = 290

 Score = 44.0 bits (103), Expect = 0.003
 Identities = 45/218 (20%), Positives = 92/218 (41%), Gaps = 24/218 (11%)

Query: 54  RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFE 112
           R+++ +SR  + R     ++++ L P++    +++R +  +  + + C+       +   
Sbjct: 87  RIIVTTSRDPSTRLSQFAKEIKLLFPNA---VRLNRGNYVMPNLVDACKKSGTTDLVVLH 143

Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
             +     + +S+ P GP+A+F + N+    ++  +GN  + + P L FD  F       
Sbjct: 144 EHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVN-PHLIFD-NFTTA---- 197

Query: 173 LLKELLTQIFGTPRYHPRSQPFVD--HIFTFSIADNRIWFRN--YQIIEEDAALVEIGPR 228
               L  ++    ++   + P  D   + TF+   + I  R   Y    E   + E+GPR
Sbjct: 198 ----LGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVRTREGVEIAEVGPR 253

Query: 229 FVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLAT 266
           F + L ++  G+       EN         RR IR A 
Sbjct: 254 FEMRLFELRLGTL------ENKDADVEWQLRRFIRTAN 285
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
          Length = 257

 Score = 40.9 bits (95), Expect = 0.022
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 136 VQNIHTLAELKMSGNCLKGSRPILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPF 194
           ++N  +L ++K S  C +G++P+L F    F+    Y  LK LLT  F  P         
Sbjct: 110 IENFVSLKDIKNS-KCPEGTKPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAG 168

Query: 195 VDHIFTFSIADNRIWFRNYQI-------IEEDAALVEIGP 227
           ++++  F+  + +I+FR Y++             L EIGP
Sbjct: 169 LEYVLHFTALNGKIYFRRYKLLLKKSGCRTPRIELEEIGP 208
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
          Length = 343

 Score = 40.5 bits (94), Expect = 0.028
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 28/204 (13%)

Query: 54  RVLIFSSRGINFRTRHLMQDLRSLMP--HSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
           +VL+ + R  + R   L+ +L S++P  H +     D K     + E    K+    I  
Sbjct: 128 KVLLTTCRFNSTRGPALISELLSVIPNSHYQKRGTYDLKK----IVEYATKKDFTSLIVV 183

Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQY 171
              +++   + +   P GP+A F + N+    ++K  GN     +P L  +  F      
Sbjct: 184 HTNRREPDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNP-TSHQPELVLN-NFTTRLGN 241

Query: 172 ALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI------IEEDAA---- 221
            + +    Q    P  + R +     + TF    + I+FR+++        + D      
Sbjct: 242 RVGR--FFQSLFPPDPNFRGR----RVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEET 295

Query: 222 ----LVEIGPRFVLNLIKIFKGSF 241
               L E GPRF L L+ +  G+F
Sbjct: 296 IKPRLQECGPRFTLKLVTLQHGTF 319
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
          Length = 253

 Score = 39.7 bits (92), Expect = 0.052
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 136 VQNIHTLAELKMSGNCLKGSRPILSFD-PAFDREPQYALLKELLTQIFGTPRYHPRSQPF 194
           ++N  +L ++K S  C +G++P+L F    FD    Y  LK LL   F  P         
Sbjct: 121 IENFVSLKDIKNS-KCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query: 195 VDHIFTFSIADNRIWFRNYQI-------IEEDAALVEIGP 227
           ++++  F+  + +I+FR+Y++             L E+GP
Sbjct: 180 LEYVLHFTALNGKIYFRSYKLLLKKSGCRTPRIELEEMGP 219
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
          Length = 287

 Score = 39.3 bits (91), Expect = 0.060
 Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 30/209 (14%)

Query: 45  SEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETK--------MDRKDKLFVV 96
                    RVL+ +SR  + +     +++R ++P +    +        MD   +    
Sbjct: 75  YANAGVEDPRVLVTTSREPSQKLLEFAKEIRLVIPSAVRMNRGNLSVRQLMDAARRGQ-- 132

Query: 97  NEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSR 156
                    +  +  E++   D  + +S+ P GP+  F + N+ T  +++  G  +    
Sbjct: 133 -------YSDVVVLQESQGVPDS-LTVSHLPLGPTVVFTIHNLVTRHDIQDVGT-MSEQH 183

Query: 157 PILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII 216
           P L F+  F        ++++L  +F  P      +P    + TF   ++ + FR++   
Sbjct: 184 PHLIFE-NFTTRLGRR-VRDVLKFLFPVP------KPRPTRVLTFDNQNDFVSFRHHTFR 235

Query: 217 E---EDAALVEIGPRFVLNLIKIFKGSFG 242
                +  L E+GPR  +   +I  G+  
Sbjct: 236 AVKGREVQLTEVGPRMDVAPYRITLGTLE 264
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
           1537-3735 [Arabidopsis thaliana]
 gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
           73469-75667 [Arabidopsis thaliana]
          Length = 294

 Score = 39.3 bits (91), Expect = 0.063
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 36/229 (15%)

Query: 17  NTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKE----RVLIFSSRGINFRTRHLMQ 72
           N +   +Q    E + TA     VP    + ++ N      ++L+ +SR  +       +
Sbjct: 48  NVEAKLRQEIDLEDQNTA-----VPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTK 102

Query: 73  DLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNK----CIYFEAKKKQDLYMWLSNSPE 128
           +L+ + P+S+   +++R     V++E+ E    +      +  E +   D  + +S+ P 
Sbjct: 103 ELKFVFPNSQ---RINRGS--QVISEIIETARSHDFTDVILVHEHRGVPD-GLIISHLPF 156

Query: 129 GPSAKFLVQNI---HTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTP 185
           GP+A F + N+   H +++ K  G  +    P L F+  F  +     +  +L  IF  P
Sbjct: 157 GPTAYFGLLNVVTRHDISDKKSIGK-MPEQYPHLIFN-NFTTQMG-QRVGNILKHIFPAP 213

Query: 186 RYHPRSQPFVDHIFTFSIADNRIWFRNY-----QIIEEDAALVEIGPRF 229
           +   +       I TFS   + I FRN+     +   +   L EIGPRF
Sbjct: 214 KLDAK------RIVTFSNQSDYISFRNHVYDKGEGGPKSIELKEIGPRF 256
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
 emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
          Length = 361

 Score = 39.0 bits (90), Expect = 0.087
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 220 AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
             L+EIGPR  L LIKI + + GG  LY +  ++S    ++ 
Sbjct: 259 IKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQ 300
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
          Length = 256

 Score = 39.0 bits (90), Expect = 0.093
 Identities = 53/242 (21%), Positives = 95/242 (38%), Gaps = 39/242 (16%)

Query: 19  KKAKKQLAGSEQEATAGEEFIVPPPVSEG--KWKNKE---RVLIFSSRGINFRTRHLMQD 73
           K    Q    E      +E +     ++    + NK+   ++LI +S   + RT  L + 
Sbjct: 10  KTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQ 69

Query: 74  LRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAK 133
           L +++P+S    +  R   L  +   C  ++    I     +K    + LS+ P GP+A 
Sbjct: 70  LSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 127

Query: 134 FLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYH----- 188
           F + ++    E+K  G                D       + E++   F T   H     
Sbjct: 128 FKMSSVRLRKEIKRRGK---------------DPTEH---IPEIILNNFTTRLGHSIGRM 169

Query: 189 -----PRSQPFVDH-IFTFSIADNRIWFRNYQI---IEEDAALVEIGPRFVLNLIKIFKG 239
                P +  F+   + TF    + I+FR ++     E+   + E+GPRF L L  + KG
Sbjct: 170 FASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKG 229

Query: 240 SF 241
           +F
Sbjct: 230 TF 231
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
 gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
           F44G4.1 (GB:Z49910) and several yeast hypothetical
           proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
           region (SP:P38805) [Arabidopsis thaliana]
          Length = 434

 Score = 38.2 bits (88), Expect = 0.16
 Identities = 51/259 (19%), Positives = 96/259 (36%), Gaps = 49/259 (18%)

Query: 20  KAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKE--------------RVLIFSSRGINF 65
           K  +++     E T   +  V  P  E  + + +              +VL+ + R  + 
Sbjct: 93  KPPQKMIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNST 152

Query: 66  RTRHLMQDLRSLMP--HSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKKQDLY--- 120
           R   L+ +L S++P  H +     D K     + E    K+    I     +++  +   
Sbjct: 153 RGPALISELLSVIPNSHYQKRGTYDLKK----IVEYATKKDFTSLIVVHTNRREPAFAIS 208

Query: 121 ----MWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 176
               + +   P GP+A F + N+    ++K  GN     +P L  +  F       + + 
Sbjct: 209 YVDALLIIGLPNGPTAHFKLSNLVLRKDIKNHGNP-TSHQPELVLN-NFTTRLGNRVGR- 265

Query: 177 LLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI------IEEDAA--------L 222
              Q    P  + R +     + TF    + I+FR+++        + D          L
Sbjct: 266 -FFQSLFPPDPNFRGR----RVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKPRL 320

Query: 223 VEIGPRFVLNLIKIFKGSF 241
            E GPRF L L+ +  G+F
Sbjct: 321 QECGPRFTLKLVTLQHGTF 339
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
          Length = 394

 Score = 37.4 bits (86), Expect = 0.22
 Identities = 41/196 (20%), Positives = 83/196 (41%), Gaps = 13/196 (6%)

Query: 54  RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
           +VLI  +     +TR    +L  + P++    K+  K  +  + +  E +     +    
Sbjct: 186 KVLITFADNPVTKTRKFGLELSRIFPNAL--VKIRNKSSVKKICKSAEREEFTDVVIVNE 243

Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
            +++   + + + P GP+A F + N+   +++K     +   RP +  +  F        
Sbjct: 244 DRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILN-NFTTRLGLT- 301

Query: 174 LKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN--YQIIEEDA--ALVEIGPRF 229
           +  +L  +F    + P  +       TF    + I+FR+  Y+  +E     L E+GPRF
Sbjct: 302 VGRMLGALF---HHDPEFRG--RRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRF 356

Query: 230 VLNLIKIFKGSFGGPT 245
            L L  + +G+F   T
Sbjct: 357 TLKLRSLQEGTFDSKT 372
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
          Length = 349

 Score = 36.6 bits (84), Expect = 0.39
 Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 42/259 (16%)

Query: 5   KRKRGSLPEVATNTKKAK---KQLAGSEQEATAGEEFIVPPPVSEG--KWKNKE---RVL 56
           K++R +L + A      K    Q    E      +E +     ++    + NK+   ++L
Sbjct: 86  KKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKIL 145

Query: 57  IFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEAKKK 116
           I +S   + RT  L + L +++P+S    +  R   L  +   C  ++    I     +K
Sbjct: 146 ITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINEDRK 203

Query: 117 QDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKE 176
               + LS+ P GP+A F + ++    E+K  G                D       + E
Sbjct: 204 TPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGK---------------DPTEH---IPE 245

Query: 177 LLTQIFGTPRYH----------PRSQPFVDH-IFTFSIADNRIWFRNYQI---IEEDAAL 222
           ++   F T   H          P +  F+   + TF    + I+FR ++     E+   +
Sbjct: 246 IILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGI 305

Query: 223 VEIGPRFVLNLIKIFKGSF 241
            E+GPRF L L  + KG+F
Sbjct: 306 QELGPRFTLKLRSLQKGTF 324
>gb|AAD02810.1| (AF062396) protein phosphatase 2A regulatory subunit isoform B'
           delta [Arabidopsis thaliana]
 dbj|BAB01066.1| (AB023041) protein phosphatase 2A regulatory subunit B'
           [Arabidopsis thaliana]
          Length = 477

 Score = 36.6 bits (84), Expect = 0.40
 Identities = 11/38 (28%), Positives = 20/38 (51%), Gaps = 1/38 (2%)

Query: 169 PQYALLKELLTQIFGTPRYHPR-SQPFVDHIFTFSIAD 205
           P   ++ E L +I  +P   P+ S+ ++DH F   + D
Sbjct: 167 PHLQIVYEFLLRIVASPNTDPKISKKYIDHTFVLKLLD 204
>gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster]
          Length = 460

 Score = 35.8 bits (82), Expect = 0.66
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 212 NYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
           N +  +    L EIGPR  + LIKI +G   G  LY
Sbjct: 260 NLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLY 295
>gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanogaster]
          Length = 460

 Score = 35.8 bits (82), Expect = 0.75
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 212 NYQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLY 247
           N +  +    L EIGPR  + LIKI +G   G  LY
Sbjct: 260 NLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLY 295
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
 pir||T38834 hypothetical coiled-coil protein - fission yeast
           (Schizosaccharomyces pombe)
 emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
           pombe]
          Length = 306

 Score = 33.9 bits (77), Expect = 2.6
 Identities = 41/209 (19%), Positives = 78/209 (36%), Gaps = 26/209 (12%)

Query: 44  VSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFV-VNEVCEM 102
               + +   ++L+ +S+  + +      +L    P++       RK    + V+E+ E 
Sbjct: 85  AYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEF-----RKRTGDIEVHEIAEA 139

Query: 103 ---KNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPIL 159
              +     +     +K+   + L + P GPS  F + N+ T  E+   G    G  P L
Sbjct: 140 AAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRS-TGHIPEL 198

Query: 160 SFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFR--NYQIIE 217
             +  F       + +   +    TP+   R       + T     + ++FR   Y   E
Sbjct: 199 IIN-NFSTRLGMTVARAFQSLFIQTPQIQGR------QVVTIHCQRDFLFFRRHRYAFRE 251

Query: 218 ED-------AALVEIGPRFVLNLIKIFKG 239
           +          L E+GPRF + L  + KG
Sbjct: 252 KSNMPDGIGTGLQELGPRFTMRLRMVQKG 280
>gb|AAG52369.1|AC011765_21 (AC011765) putative cytochrome P450; 69682-71175 [Arabidopsis
           thaliana]
          Length = 497

 Score = 33.9 bits (77), Expect = 2.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 122 WLSNSPEGPSAKFLVQNIHTLAEL 145
           W SN P GP  KFL+ N+H +  L
Sbjct: 23  WRSNIPPGPKPKFLLGNLHQMKPL 46
>sp|P07788|COTA_BACSU SPORE COAT PROTEIN A
 pir||F69604 spore coat protein (outer) cotA - Bacillus subtilis
 emb|CAB12449.1| (Z99107) spore coat protein (outer) [Bacillus subtilis]
          Length = 513

 Score = 33.5 bits (76), Expect = 4.0
 Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 9/94 (9%)

Query: 136 VQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFV 195
           +QNI T   LK++G   +  RP+L  +     +P     K   T+I+        + P  
Sbjct: 366 IQNIRT---LKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIH 422

Query: 196 DHIFTFSIADNRIWFRNYQII--EEDAALVEIGP 227
            H+ +F + D     R + I   +E   L   GP
Sbjct: 423 LHLVSFRVLDR----RPFDIARYQESGELSYTGP 452
>dbj|BAA22774.1| (AB007638) spore coat proein A [Bacillus subtilis]
          Length = 515

 Score = 33.5 bits (76), Expect = 4.0
 Identities = 24/94 (25%), Positives = 39/94 (40%), Gaps = 9/94 (9%)

Query: 136 VQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFV 195
           +QNI T   LK++G   +  RP+L  +     +P     K   T+I+        + P  
Sbjct: 368 IQNIRT---LKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIH 424

Query: 196 DHIFTFSIADNRIWFRNYQII--EEDAALVEIGP 227
            H+ +F + D     R + I   +E   L   GP
Sbjct: 425 LHLVSFRVLDR----RPFDIARYQESGELSYTGP 454
>pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegans
 gb|AAB97575.1| (AF043700) contains similarity to human RNA-binding protein FUS/TLS
           (SW:Q28009) [Caenorhabditis elegans]
          Length = 608

 Score = 33.1 bits (75), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (55%)

Query: 218 EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPN 256
            +  L EIGPR  L L+KI +G   G  LY   + ++P+
Sbjct: 336 SNVRLHEIGPRLTLELVKIEEGIDEGEVLYHKHNAKTPD 374
CPU time:    38.87 user secs.	    1.51 sys. secs	   40.38 total secs.

  Database: nr
    Posted date:  Feb 10, 2001  7:10 PM
  Number of letters in database: 195,544,254
  Number of sequences in database:  618,844
  
Lambda     K      H
   0.312    0.159    0.497 

Gapped
Lambda     K      H
   0.270   0.0558    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109967341
Number of Sequences: 618844
Number of extensions: 4278597
Number of successful extensions: 11771
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 11695
Number of HSP's gapped (non-prelim): 101
length of query: 339
length of database: 195,544,254
effective HSP length: 56
effective length of query: 283
effective length of database: 160,888,990
effective search space: 45531584170
effective search space used: 45531584170
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.1 bits)
S2: 72 (32.2 bits)