Sequences with E-value BETTER than threshold 286 2e-76
277 1e-73
252 3e-66
244 1e-63
237 1e-61
236 3e-61
158 7e-38
Sequences with E-value WORSE than threshold gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila me... 43 0.007
emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo s... 42 0.010
pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fra... 41 0.026
dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapi... 40 0.031
emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora ... 40 0.053
dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapi... 39 0.079
sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN... 38 0.12
pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis ele... 38 0.13
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN... 37 0.26
dbj|BAA81892.1| (AB026979) ten-m3 [Danio rerio] 35 1.4
gb|AAF21684.1|AF051979_1 (AF051979) maturase K [Boschniakia h... 33 3.9
pir||T39008 probable mating protein - fission yeast (Schizosa... 33 4.1
dbj|BAA95117.1| (AB041810) unnamed protein product [Mus muscu... 33 4.6
ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae] >gi|1730744... 33 5.2
sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C ... 32 10.0
Alignments
>gb|AAF47877.2| (AE003480) CG11583 gene product [Drosophila melanogaster]
Length = 359
Score = 286 bits (726), Expect = 2e-76
Identities = 135/229 (58%), Positives = 179/229 (77%), Gaps = 2/229 (0%)
Query: 39 IVPPPVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNE 98
+VP + KW NK+RVL+FS+RGI+ R RHLM+D+++LMPH R E+KM+R L VVNE
Sbjct: 36 VVPKKARKEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNE 95
Query: 99 VCEMKNCNKCIYFEAKKKQDLYMWLSNS--PEGPSAKFLVQNIHTLAELKMSGNCLKGSR 156
+CEMK+CNK + FE ++K+DLYMW+SN+ GPSAKFL++NIHT+AELKM+GNCL+GSR
Sbjct: 96 MCEMKHCNKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSR 155
Query: 157 PILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII 216
P+LSFD FD P LLKEL Q + P +HP+SQPFVDH+FTF+ D RIWFRN+QI+
Sbjct: 156 PLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQIL 215
Query: 217 EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLA 265
ED L E+GPR+V+N +KIF GSF G T++ENP Y SP+ R++++ A
Sbjct: 216 SEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKA 264
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
pir||S44853 K12H4.3 protein - Caenorhabditis elegans
gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank: CE5D1 (Z14791),
CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
putative [Caenorhabditis elegans]
Length = 352
Score = 277 bits (702), Expect = 1e-73
Identities = 121/213 (56%), Positives = 171/213 (79%), Gaps = 1/213 (0%)
Query: 49 WKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKC 108
W N+ERVL+ SRG + RTR+LM+D++ L+PH++ ++K+D++ L V+NE+ EMKNC K
Sbjct: 59 WTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKV 118
Query: 109 IYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDRE 168
+YFE++K++D Y+W+SN +GPS KFLV N+HT+ ELKMSGNCL+ SRP+LSFD AFD++
Sbjct: 119 MYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKK 178
Query: 169 PQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIAD-NRIWFRNYQIIEEDAALVEIGP 227
PQ L+K +L Q GTP +HPRSQPFVDH+F FS+ + ++IWFRN+QI++E L E+GP
Sbjct: 179 PQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGP 238
Query: 228 RFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRR 260
RFVL ++++F GSF G LY+NP+Y SPN+ RR
Sbjct: 239 RFVLEMVRLFAGSFEGAVLYDNPNYVSPNVIRR 271
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 252 bits (638), Expect = 3e-66
Identities = 121/232 (52%), Positives = 160/232 (68%), Gaps = 12/232 (5%)
Query: 48 KWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNK 107
++ NK+R L+ SSRG+N+R RHL+QDL L+PHSR E K+D K L +NE+ E+ NCN
Sbjct: 26 QFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNN 85
Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDR 167
++FEA+K QDLY+WLS P GP+ KF +QN+HT+ EL +GNCLKGSRP+LSFD F+
Sbjct: 86 VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145
Query: 168 EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----------- 216
P Y L+KELL F P +S+PF+DH+ +FSI D++IW R Y+I
Sbjct: 146 SPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEISHSTKNKEEYED 205
Query: 217 -EEDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATA 267
EED +LVEIGPRFV+ +I I +GSFGGP +YEN Y SPN+ R I+ A
Sbjct: 206 GEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAA 257
>emb|CAC01521.1| (AL391034) conserved hypothetical protein [Schizosaccharomyces
pombe]
Length = 295
Score = 244 bits (618), Expect = 1e-63
Identities = 118/255 (46%), Positives = 168/255 (65%), Gaps = 8/255 (3%)
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
K++VL+ SSRG+ +R RHL+ DL S+MPHS+ ++K+D KD+L+ +NE+ E+ NCN +F
Sbjct: 42 KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFF 101
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQY 171
E+++++DLY+ ++ +P GP+ KF V+N+HT+ EL M+GN LKGSRPILSFD FD P
Sbjct: 102 ESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHL 161
Query: 172 ALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEED------AALVEI 225
++KELL Q FG P+ RS+PF+D + T +IAD +IWFRNY+I E + L+EI
Sbjct: 162 KVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEI 221
Query: 226 GPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAXXXXXXXXXXXXXXXXX 285
GPRFV+ +I I +GSFGGP +Y+N + S M R IR A
Sbjct: 222 GPRFVMTIINILEGSFGGPVIYKNDTFVSSTMVRAAIR--NQAAQRYVNRQESKLERQVR 279
Query: 286 XDRPVIPVDPTEAVF 300
+ VIP DP + VF
Sbjct: 280 AQQNVIPEDPLDNVF 294
>gb|AAG52272.1|AC019018_9 (AC019018) unknown protein; 80333-82175 [Arabidopsis thaliana]
Length = 320
Score = 237 bits (599), Expect = 1e-61
Identities = 119/227 (52%), Positives = 160/227 (70%), Gaps = 14/227 (6%)
Query: 49 WKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRK-DKLFVVNEVCEMKNCNK 107
+KNKE+VL+ SR I+FR R LM ++ SL+PH + ++K++ K K +NE+ E+KN N
Sbjct: 53 FKNKEKVLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNS 112
Query: 108 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDR 167
C++FE +K +DLYMW+ SP GPS KFLV+ +H + E+K++GN LKGSRP+L+F FD+
Sbjct: 113 CLFFECRKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDK 172
Query: 168 EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EEDA--- 220
+ + LLKE+LTQ+FG P+ H +S+P+ DH+F FSI D IWFRNYQI E D
Sbjct: 173 DAHWKLLKEMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAK 232
Query: 221 ------ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN R +
Sbjct: 233 GGLDKMTLIEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRAL 279
>gb|AAF35412.1| (AC024081) unknown protein [Arabidopsis thaliana]
Length = 315
Score = 236 bits (596), Expect = 3e-61
Identities = 119/233 (51%), Positives = 159/233 (68%), Gaps = 14/233 (6%)
Query: 43 PVSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRK-DKLFVVNEVCE 101
P ++NKE+VL+ SR INFR RHLM ++ SL+PH + ++K++ K + +NE+ E
Sbjct: 43 PAYASVFRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIE 102
Query: 102 MKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSF 161
+K + C++FE +K +DLYMW+ SP GPS KFLV +HT+ ELK++GN LKGSRP+L+F
Sbjct: 103 LKGSSSCLFFECRKHKDLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTF 162
Query: 162 DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----E 217
F+ + + LLKE+LTQIFG P H +S+P+ DH+F FSI D+ IWFRNYQI E
Sbjct: 163 SSNFENDAHWKLLKEMLTQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNE 222
Query: 218 EDA---------ALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
D L+E+GPRF LN IKIF GSFGG TLYENP Y SPN R +
Sbjct: 223 SDKIARGDLDKMTLIEVGPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRAL 275
>ref|NP_060791.1| hypothetical protein FLJ11100 [Homo sapiens]
ref|XP_003882.1| hypothetical protein FLJ11100 [Homo sapiens]
dbj|BAA92003.1| (AK001962) unnamed protein product [Homo sapiens]
Length = 129
Score = 158 bits (397), Expect = 7e-38
Identities = 89/131 (67%), Positives = 99/131 (74%), Gaps = 11/131 (8%)
Query: 1 MSAYKRKRGSLPEVATNTKKAKKQLAGSE----QEATAGEEFI-----VPPPVSEGKWKN 51
M+A KRKR A KK K+ +E + ATA E +P PV +GKWKN
Sbjct: 1 MAATKRKRRG--GFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKN 58
Query: 52 KERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYF 111
KER+LIFSSRGINFRTRHLMQDLR LMPHS+A+TKMDRKDKLFV+NEVCEMKNCNKCIYF
Sbjct: 59 KERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYF 118
Query: 112 EAKKKQDLYMW 122
EAKKKQDLYMW
Sbjct: 119 EAKKKQDLYMW 129
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 42.7 bits (99), Expect = 0.007
Identities = 45/215 (20%), Positives = 99/215 (45%), Gaps = 17/215 (7%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFE 112
++++ +S + R + M++LR ++P+++ +M+R + +L + C N +
Sbjct: 82 KIMLTTSHNPSSRLKMFMKELRLIIPNAQ---QMNRGNYQLTTLMHACRANNVTDFLIVH 138
Query: 113 AKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYA 172
+ + + + P GP+A F + ++ ++ G+ + +P L F+ + P
Sbjct: 139 EHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDIGH-MSEQKPHLIFNNF--KTPIGL 195
Query: 173 LLKELLTQIFGTPRYHP-RSQPFVDHIFTFSIADNRIWFRN--YQIIEEDAALVEIGPRF 229
++L +F P+ + R F++H ++ I FR+ Y+ + ++ L E+GPRF
Sbjct: 196 RTVKILKHLFPVPKENSQRVMSFLNH-------NDSIIFRHHQYKYVNKELELTEVGPRF 248
Query: 230 VLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRL 264
L L +I G+ + P M+ RL
Sbjct: 249 SLKLYQIKLGTLENIKAADTEWINRPYMNTSQKRL 283
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 41.9 bits (97), Expect = 0.010
Identities = 31/107 (28%), Positives = 55/107 (50%), Gaps = 11/107 (10%)
Query: 136 VQNIHTLAELKMSGNCLKGSRPILSF-DPAFDREPQYALLKELLTQIFGTPRYHPRSQPF 194
++N +L ++K S C +G++P+L F F+ Y LK LLT F P
Sbjct: 110 IENFVSLKDIKNS-KCPEGTKPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAG 168
Query: 195 VDHIFTFSIADNRIWFRNYQIIEEDAA-------LVEIGPRFVLNLI 234
++++ F+ + +I+FR Y+++ + + L EIGP LNL+
Sbjct: 169 LEYVLHFTALNGKIYFRRYKLLLKKSGCRTPRIELEEIGPS--LNLV 213
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 40.8 bits (94), Expect = 0.026
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 14/192 (7%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
++LI +S + RT L + L +++P+S + R L + C ++ I
Sbjct: 50 KILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINE 107
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 108 DRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTR------ 161
Query: 174 LKELLTQIFGTPRYHPRSQPFVD-HIFTFSIADNRIWFRNYQII---EEDAALVEIGPRF 229
L + ++F + P + F+ + TF + I+FR ++ I E+ + E+GPRF
Sbjct: 162 LGHSIGRMFAS--LFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRF 219
Query: 230 VLNLIKIFKGSF 241
L L + KG+F
Sbjct: 220 TLKLRSLQKGTF 231
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 40.4 bits (93), Expect = 0.031
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 14/192 (7%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNKCIYFEA 113
++LI +S + RT L + L +++P+S + R L + C ++ I
Sbjct: 143 KILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINE 200
Query: 114 KKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYAL 173
+K + LS+ P GP+A F + ++ E+K G P + + R
Sbjct: 201 DRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTR------ 254
Query: 174 LKELLTQIFGTPRYHPRSQPFVD-HIFTFSIADNRIWFRNYQII---EEDAALVEIGPRF 229
L + ++F + P + F+ + TF + I+FR ++ I E+ + E+GPRF
Sbjct: 255 LGHSIGRMFAS--LFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRF 312
Query: 230 VLNLIKIFKGSF 241
L L + KG+F
Sbjct: 313 TLKLRSLQKGTF 324
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 39.6 bits (91), Expect = 0.053
Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 18/237 (7%)
Query: 12 PEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKERVLIFSSRGINFRTRHLM 71
PE+A + K+ +K G+ + SE R+L+ +SR + R
Sbjct: 44 PEIAKD-KELRKDFDYDVSRDVNGDAIDIDDEYSELSGVIDPRILVTTSRDPSSRLGQFS 102
Query: 72 QDLRSLMPHSRAETKMDRKDKLFVVNEV---CEMKNCNKCIYFEAKKKQDLYMWLSNSPE 128
+++R L+P S +++R + V+ ++ + +N + + M +S+ P
Sbjct: 103 KEIRLLLPTS---VRLNRGN--LVLEDLVGAAKAQNLTDVVLLHEHRGVPTAMTISHFPH 157
Query: 129 GPSAKFLVQNIHTLAELKMS-GNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRY 187
GP+ + N+ A++ S + S P L F+ F + ++K +L +F P
Sbjct: 158 GPTLMVSLHNVVLRADIPKSIKGTVSESYPRLIFE-GFSTKLGERVVK-ILKHLF--PPR 213
Query: 188 HPRSQPFV-DHIFTFSIADNRIWFRNYQIIE---EDAALVEIGPRFVLNLIKIFKGS 240
P +P V + + TF D+ I R++ + + L E+GPRF + KI G+
Sbjct: 214 EPTQKPNVGNRVITFVNNDDTIEVRHHVYVRTSYDSVELSEVGPRFTMKPFKITMGT 270
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 39.2 bits (90), Expect = 0.079
Identities = 35/147 (23%), Positives = 67/147 (44%), Gaps = 24/147 (16%)
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFL---------------VQNIHTLAELKMSGNCLKG 154
+F K L+M+ S++ + P+ + ++N +L ++K S C +G
Sbjct: 80 FFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNS-KCPEG 138
Query: 155 SRPILSF-DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNY 213
++P+L F FD Y LK LL F P ++++ F+ + +I+FR+Y
Sbjct: 139 TKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSY 198
Query: 214 QIIEEDAA-------LVEIGPRFVLNL 233
+++ + + L E+GP L L
Sbjct: 199 KLLLKKSGCRTPRIELEEMGPSLDLVL 225
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
Length = 754
Score = 38.4 bits (88), Expect = 0.12
Identities = 52/211 (24%), Positives = 95/211 (44%), Gaps = 33/211 (15%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLF--VVNEVCEMKNCNKCIYF 111
+V+I + T +L+ +P+S T RK+ L ++ + E + + +
Sbjct: 529 KVMITMTPKAKITTFKFCFELQKCIPNSEIFT---RKNVLLKTIIEQAKEREFTDLLVVH 585
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLKGSRPILSFDPAF 165
E +KK + ++ + PEGP+A F + ++ +LK+ CLK + F +
Sbjct: 586 EDRKKPNGIIF-CHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGEST 644
Query: 166 DREPQYAL----------LKELLTQIF-GTPRYHPRSQPFVDHIFTFSIADNRIWFRN-- 212
P+ L + +L +F P++ R + TF + I+FR+
Sbjct: 645 SHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGR------RVVTFHNQRDYIFFRHHR 698
Query: 213 YQIIEE--DAALVEIGPRFVLNLIKIFKGSF 241
Y+ +E AAL+E+GPRF L L + KG+F
Sbjct: 699 YEFKKEGSKAALLELGPRFTLRLKWLQKGTF 729
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
Length = 746
Score = 38.4 bits (88), Expect = 0.13
Identities = 52/211 (24%), Positives = 95/211 (44%), Gaps = 33/211 (15%)
Query: 54 RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLF--VVNEVCEMKNCNKCIYF 111
+V+I + T +L+ +P+S T RK+ L ++ + E + + +
Sbjct: 521 KVMITMTPKAKITTFKFCFELQKCIPNSEIFT---RKNVLLKTIIEQAKEREFTDLLVVH 577
Query: 112 EAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMS------GNCLKGSRPILSFDPAF 165
E +KK + ++ + PEGP+A F + ++ +LK+ CLK + F +
Sbjct: 578 EDRKKPNGIIF-CHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKSLKLFYKFGEST 636
Query: 166 DREPQYAL----------LKELLTQIF-GTPRYHPRSQPFVDHIFTFSIADNRIWFRN-- 212
P+ L + +L +F P++ R + TF + I+FR+
Sbjct: 637 SHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGR------RVVTFHNQRDYIFFRHHR 690
Query: 213 YQIIEE--DAALVEIGPRFVLNLIKIFKGSF 241
Y+ +E AAL+E+GPRF L L + KG+F
Sbjct: 691 YEFKKEGSKAALLELGPRFTLRLKWLQKGTF 721
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 37.3 bits (85), Expect = 0.26
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 20/203 (9%)
Query: 45 SEGKWKNKE--RVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEM 102
SE +W + +++I +SR + R + ++++ + P+++ + K V + +
Sbjct: 68 SEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVV--QASKA 125
Query: 103 KNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFD 162
++ I F + M + + P GP+A F + N+ ++ G + P L FD
Sbjct: 126 QDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFD 184
Query: 163 PAFDREPQYALLKELLTQIFGTPRYH--PRSQPFVDHIFTFSIADNRIWFRNYQIIEE-- 218
L L F T H P +P I TFS +++ I FR++ E
Sbjct: 185 N----------LNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTEND 234
Query: 219 -DAALVEIGPRFVLNLIKIFKGS 240
+ L E GPRF L +I G+
Sbjct: 235 GEVELTEAGPRFELKPYQIKLGT 257
>dbj|BAA81892.1| (AB026979) ten-m3 [Danio rerio]
Length = 2590
Score = 34.9 bits (79), Expect = 1.4
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 240 SFGGPTLYENPHYQ--SPNMHRRMIRLATAAXXXXXXXXXXXXXXXXXXDRPVIPVDPTE 297
S P++ E+ H Q SPN+H + + A RPV P+
Sbjct: 4 SLSSPSVTEHSHSQPPSPNLHDNQSSILSNATTQAVQDSDSEEEYTAVLYRPVTQPAPSH 63
Query: 298 AVFYTPAEEKPQVIETEPPAPKP 320
+ P+ + Q T PP P P
Sbjct: 64 SCNEQPSNQHQQGQSTLPPVPPP 86
>gb|AAF21684.1|AF051979_1 (AF051979) maturase K [Boschniakia hookeri]
Length = 508
Score = 33.4 bits (75), Expect = 3.9
Identities = 32/102 (31%), Positives = 44/102 (42%), Gaps = 20/102 (19%)
Query: 155 SRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIAD---NRIWFR 211
SR ILS +P +D + ++K L+T++ YH F S D N W R
Sbjct: 38 SRSILSENPGYDNKSSLLIVKRLITRM-----YHQNH-------FMISPNDSNQNPFWAR 85
Query: 212 N----YQIIEEDAALVEIGPRFVLNLIKIFKGSFGGPTLYEN 249
N Y+II E A + P F L LI +G Y+N
Sbjct: 86 NKNFYYEIISEGFAFIVEIP-FSLRLISCLEGKNKKIVKYQN 126
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
Length = 361
Score = 33.4 bits (75), Expect = 4.1
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 222 LVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQS 254
L+EIGPR L LIKI + + GG LY + ++S
Sbjct: 261 LIEIGPRMTLELIKITEDAMGGKVLYHSHVHKS 293
>dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus]
Length = 306
Score = 33.4 bits (75), Expect = 4.6
Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 110 YFEAKKKQDLYMWLSNSPEGPSAKFL---------------VQNIHTLAELKMSGNCLKG 154
+F K L+M+ S++ + P+ + ++ +L ++K S C +G
Sbjct: 80 FFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIEKFVSLKDIKTS-KCPEG 138
Query: 155 SRPILSF-DPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNY 213
++P+L F FD + LK LL F P ++++ F+ + +++FR+Y
Sbjct: 139 TKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAGLEYVLHFTALNGKVYFRSY 198
Query: 214 QIIEEDAA-------LVEIGP 227
+++ + + L E+GP
Sbjct: 199 KLLLKKSGCRTPRIELEEMGP 219
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
Length = 290
Score = 33.0 bits (74), Expect = 5.2
Identities = 55/279 (19%), Positives = 110/279 (38%), Gaps = 32/279 (11%)
Query: 2 SAYKRKRGSLPEVATNTKKAKKQLAGSE------------QEATAGEEFIVPPPVSEGKW 49
S ++KR + + K K+LA E +E+ ++ V +
Sbjct: 23 SQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESEEADDLQVDDEYAATSG 82
Query: 50 KNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFV-VNEVCEMKNCNKC 108
R+++ +SR + R ++++ L P++ +++R + + + + C+
Sbjct: 83 IMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNA---VRLNRGNYVMPNLVDACKKSGTTDL 139
Query: 109 IYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDRE 168
+ + + +S+ P GP+A+F + N+ ++ +GN P L FD
Sbjct: 140 VVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGN-QSEVNPHLIFD-----N 193
Query: 169 PQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRN--YQIIEEDAALVEIG 226
AL K ++ + P+ + + TF+ + I R Y E + E+G
Sbjct: 194 FTTALGKRVVCILKHLFNAGPKKDS--ERVITFANRGDFISVRQHVYVRTREGVEIAEVG 251
Query: 227 PRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLA 265
PRF + L ++ G+ EN RR IR A
Sbjct: 252 PRFEMRLFELRLGTL------ENKDADVEWQLRRFIRTA 284
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
Length = 289
Score = 32.2 bits (72), Expect = 10.0
Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 21/198 (10%)
Query: 50 KNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMKNCNK-- 107
+ + +VL+ +SR + R +++R L+P+S +++R + VV + E N
Sbjct: 81 EREPKVLVTTSREPSSRLAQFAKEVRLLIPNS---YRLNRGN--IVVGSLVEAARANDIT 135
Query: 108 --CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAF 165
I E + D + +S+ P GP+ F + N+ ++ +G + + P L F+
Sbjct: 136 DIVILHEHRGIPD-GLVISHLPYGPTLSFSLHNVVLRHDIPNTGT-MSEAYPHLIFENLT 193
Query: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNY---QIIEEDAAL 222
+ + +K L+ +F P + + TF+ D+ I FR++ + + L
Sbjct: 194 SKLGKR--VKTALSALFP-----PDPKDTTPRVVTFANTDDYISFRHHIYAKTGPKQIIL 246
Query: 223 VEIGPRFVLNLIKIFKGS 240
E GPRF + L +I G+
Sbjct: 247 SEAGPRFEMKLFEITLGT 264
CPU time: 42.68 user secs. 1.16 sys. secs 43.84 total secs.
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129510845
Number of Sequences: 618844
Number of extensions: 5263985
Number of successful extensions: 15114
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 15010
Number of HSP's gapped (non-prelim): 97
length of query: 339
length of database: 195,544,254
effective HSP length: 56
effective length of query: 283
effective length of database: 160,888,990
effective search space: 45531584170
effective search space used: 45531584170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 72 (32.5 bits)