Sequences with E-value BETTER than threshold 530 e-149
354 8e-97
238 6e-62
217 9e-56
217 1e-55
207 1e-52
188 5e-47
179 3e-44
179 3e-44
152 5e-36
147 2e-34
138 9e-32
110 2e-23
109 3e-23
103 3e-21
98 1e-19
95 8e-19
92 8e-18
88 9e-17
Sequences with E-value WORSE than threshold emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia t... 36 0.46
gb|AAC23588.1| (AF031931) cyclic GMP-dependent protein kinase... 34 1.9
Alignments
>ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae]
sp|P38805|YHO8_YEAST HYPOTHETICAL 35.1 KDA PROTEIN IN NAM8-GAR1 INTERGENIC REGION
pir||S46718 hypothetical protein YHR088w - yeast (Saccharomyces cerevisiae)
gb|AAB68926.1| (U00060) Yhr088wp [Saccharomyces cerevisiae]
Length = 295
Score = 530 bits (1350), Expect = e-149
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MALGNEINITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTI 60
MALGNEINITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTI
Sbjct: 1 MALGNEINITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTI 60
Query: 61 ENTRVYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPN 120
ENTRVYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPN
Sbjct: 61 ENTRVYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPN 120
Query: 121 VTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVE 180
VTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVE
Sbjct: 121 VTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVE 180
Query: 181 VKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIF 240
VKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIF
Sbjct: 181 VKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIF 240
Query: 241 FRRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKEETEWEHKPEMDKEKKKFYL 295
FRRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKEETEWEHKPEMDKEKKKFYL
Sbjct: 241 FRRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKEETEWEHKPEMDKEKKKFYL 295
>emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipolytica]
Length = 333
Score = 354 bits (899), Expect = 8e-97
Identities = 184/290 (63%), Positives = 233/290 (79%), Gaps = 3/290 (1%)
Query: 6 EINITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRV 65
+I I NK KR+++FA++KH+ NKERH MRR+RAKEE +NPEL+E+RL ENV TIE RV
Sbjct: 47 DIRIANKEKRKKVFAEMKHKLNKERHEMRRERAKEEAKNPELKEKRLAENVPDTIEAKRV 106
Query: 66 YDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVK 125
YDETI +E+EG ED+ YF +PPK+ +TT+ A+ AY+FA++L +I+P F K
Sbjct: 107 YDETIAQEMEG-EDEFKEYF--EEGKPPKVLITTSKRARGQAYDFADLLYDIIPGSEFKK 163
Query: 126 RKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIV 185
R + + +I+ +C +R++TD+V+INEDKKKV GLTFIHLPEGPT YF +SS K+I
Sbjct: 164 RVGDFTMTQIAKMCAERDYTDLVVINEDKKKVNGLTFIHLPEGPTMYFSVSSLKMPKEIK 223
Query: 186 GHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHR 245
GHGR T+HIPELILNNF TRLG+TVGRLFQS+ PQ P+ GRQV+TLHNQRD+IFFRRHR
Sbjct: 224 GHGRSTTHIPELILNNFSTRLGKTVGRLFQSMFPQQPEFVGRQVVTLHNQRDWIFFRRHR 283
Query: 246 YVFKDNERVGLQELGPQFTLKLKRLQRGIKEETEWEHKPEMDKEKKKFYL 295
YVFK+ ERVGLQELGPQFTL+L+RLQRGI+ E EWEH+ MDK+KKKF+L
Sbjct: 284 YVFKNEERVGLQELGPQFTLRLRRLQRGIRGEVEWEHRSAMDKDKKKFHL 333
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
pir||T38834 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
Length = 306
Score = 238 bits (602), Expect = 6e-62
Identities = 134/303 (44%), Positives = 198/303 (65%), Gaps = 16/303 (5%)
Query: 9 ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDE 68
I NK+ RQ+ + H+KNK++ R++RAKEE ++PE + RL EN+ TIE+ RVYDE
Sbjct: 4 IKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDE 63
Query: 69 TINKEVEGDE------DDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVT 122
TI ++ +E DD + S + PK+ +TT+ A + Y+FA+ L++ PN
Sbjct: 64 TIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAE 123
Query: 123 FVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVK 182
F KR ++ EI++ KR +TD++++NED+KK LT +HLP GP+FYF LS+ K
Sbjct: 124 FRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAK 183
Query: 183 KIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFR 242
+I HGR T HIPELI+NNF TRLG TV R FQS+ Q P I+GRQV+T+H QRD++FFR
Sbjct: 184 EISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFR 243
Query: 243 RHRYVFKDNERV------GLQELGPQFTLKLKRLQRGIKEETE----WEHKPEMDKEKKK 292
RHRY F++ + GLQELGP+FT++L+ +Q+G+ + E +E + +++K
Sbjct: 244 RHRYAFREKSNMPDGIGTGLQELGPRFTMRLRMVQKGVWDRKEGEVFFESNAGEESDRRK 303
Query: 293 FYL 295
F+L
Sbjct: 304 FWL 306
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 217 bits (549), Expect = 9e-56
Identities = 135/299 (45%), Positives = 184/299 (61%), Gaps = 18/299 (6%)
Query: 9 ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDE 68
I NK +R +F K ++R + K ++E L ++ + V +TI+N RVYDE
Sbjct: 57 IKNKQRRHLMFT---RWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDE 113
Query: 69 TI----NKEVEGDE--DDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVT 122
T ++EV DE D+ YFN ++ PKI +TT+ L ++PN
Sbjct: 114 TTVDPNDEEVAYDEATDEFASYFNKQTS--PKILITTSDRPHGRTVRLCEQLSTVIPNSH 171
Query: 123 FVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVK 182
R+ G LK+I CI R+FTD+++INED+K GL HLP GPT +FK+SS K
Sbjct: 172 VYYRR-GLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230
Query: 183 KIVGHGR-PTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFF 241
+I G+ PT HIPE+ILNNF TRLG ++GR+F S+ P NP GRQV T HNQRDYIFF
Sbjct: 231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290
Query: 242 RRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKP-EMDKEKKKFYL 295
R HRY+F+ ++VG+QELGP+FTLKL+ LQ+G + E EW HKP EMD ++KF+L
Sbjct: 291 RFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 217 bits (547), Expect = 1e-55
Identities = 125/252 (49%), Positives = 164/252 (64%), Gaps = 15/252 (5%)
Query: 56 VTQTIENTRVYDETI----NKEVEGDE--DDLMRYFNSNSNEPPKIFLTTNVNAKKSAYE 109
V +TI+N RVYDET ++EV DE D+ YFN ++ PKI +TT+
Sbjct: 8 VPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTS--PKILITTSDRPHGRTVR 65
Query: 110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGP 169
L ++PN R+ G LK+I CI R+FTD+++INED+K GL HLP GP
Sbjct: 66 LCEQLSTVIPNSHVYYRR-GLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGP 124
Query: 170 TFYFKLSSFVEVKKIVGHGR-PTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQ 228
T +FK+SS K+I G+ PT HIPE+ILNNF TRLG ++GR+F S+ P NP GRQ
Sbjct: 125 TAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQ 184
Query: 229 VITLHNQRDYIFFRRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKP 284
V T HNQRDYIFFR HRY+F+ ++VG+QELGP+FTLKL+ LQ+G + E EW HKP
Sbjct: 185 VATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKP 244
Query: 285 -EMDKEKKKFYL 295
EMD ++KF+L
Sbjct: 245 REMDTSRRKFHL 256
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
Length = 343
Score = 207 bits (523), Expect = 1e-52
Identities = 127/309 (41%), Positives = 182/309 (58%), Gaps = 26/309 (8%)
Query: 9 ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDE 68
I NK KR +++A KHEK E+ R R E+ EL E+ ++ + +TIENTR DE
Sbjct: 39 IKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESDE 98
Query: 69 TINKEVEGDEDDLMRYFNSNSNEP-------PKIFLTTNVNAKKSAYEFANILIEILPNV 121
T+ + D+++L +++ P PK+ LTT + L+ ++PN
Sbjct: 99 TVCRP---DDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNS 155
Query: 122 TFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEV 181
+ KR Y LK+I + K++FT +++++ ++++ L I LP GPT +FKLS+ V
Sbjct: 156 HYQKRG-TYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVLR 214
Query: 182 KKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFF 241
K I HG PTSH PEL+LNNF TRLG VGR FQS+ P +P+ GR+V+T HNQRD+IFF
Sbjct: 215 KDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIFF 274
Query: 242 RRHRYVFKDNE-----------RVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKPEM 286
R HRY+F+ E + LQE GP+FTLKL LQ G + E EW HKPEM
Sbjct: 275 RHHRYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEM 334
Query: 287 DKEKKKFYL 295
D +++F+L
Sbjct: 335 DTSRRRFFL 343
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
F44G4.1 (GB:Z49910) and several yeast hypothetical
proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
region (SP:P38805) [Arabidopsis thaliana]
Length = 434
Score = 188 bits (474), Expect = 5e-47
Identities = 126/324 (38%), Positives = 177/324 (53%), Gaps = 49/324 (15%)
Query: 9 ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRL-------------KEN 55
I NK KR +++A KHEK E+ R R E+ EL E+ ++
Sbjct: 39 IKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEVTIWRSFFRDFLKPPQKM 98
Query: 56 VTQTIENTRVYDETINKEVEGDEDDLMRYFNSNSNEP-------PKIFLTTNVNAKKSAY 108
+ +TIENTR DET+ + D+++L +++ P PK+ LTT
Sbjct: 99 IPKTIENTRESDETVCRP---DDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGP 155
Query: 109 EFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKK-------VTGLT 161
+ L+ ++PN + KR Y LK+I + K++FT +++++ ++++ V L
Sbjct: 156 ALISELLSVIPNSHYQKRG-TYDLKKIVEYATKKDFTSLIVVHTNRREPAFAISYVDALL 214
Query: 162 FIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQN 221
I LP GPT +FKLS+ V K I HG PTSH PEL+LNNF TRLG VGR FQS+ P +
Sbjct: 215 IIGLPNGPTAHFKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPD 274
Query: 222 PDIEGRQVITLHNQRDYIFFRRHRYVFKDNE-----------RVGLQELGPQFTLKLKRL 270
P+ GR+V+T HNQRD+IFFR HRY+F+ E + LQE GP+FTLKL L
Sbjct: 275 PNFRGRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTL 334
Query: 271 QRGIKE----ETEWEHK---PEMD 287
Q G + E EW HK PEMD
Sbjct: 335 QHGTFDTKGGEFEWVHKVKSPEMD 358
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
Length = 746
Score = 179 bits (451), Expect = 3e-44
Identities = 113/301 (37%), Positives = 163/301 (53%), Gaps = 34/301 (11%)
Query: 26 KNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDETI------NKEVEGDED 79
K R R ++ + + EL E ++ V +TIE+ R YD T+ E + D
Sbjct: 449 KRALRKDKRARQGERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEAND 508
Query: 80 DLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDIC 139
+ YFN ++ PK+ +T AK + ++F L + +PN RK LK I +
Sbjct: 509 EFAPYFNRETS--PKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRK-NVLLKTIIEQA 565
Query: 140 IKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV-------------------E 180
+R FTD+++++ED+KK G+ F HLPEGPT YFK++S
Sbjct: 566 KEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKS 625
Query: 181 VKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIF 240
+K G TSH PE+ILNNF TRLG + R+ + P +P GR+V+T HNQRDYIF
Sbjct: 626 LKLFYKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIF 685
Query: 241 FRRHRYVF-KDNERVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKP-EMDKEKKKFY 294
FR HRY F K+ + L ELGP+FTL+LK LQ+G + E EW K EM+ +++F+
Sbjct: 686 FRHHRYEFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFF 745
Query: 295 L 295
L
Sbjct: 746 L 746
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
Length = 754
Score = 179 bits (451), Expect = 3e-44
Identities = 113/301 (37%), Positives = 163/301 (53%), Gaps = 34/301 (11%)
Query: 26 KNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDETI------NKEVEGDED 79
K R R ++ + + EL E ++ V +TIE+ R YD T+ E + D
Sbjct: 457 KRALRKDKRARQGERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEAND 516
Query: 80 DLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDIC 139
+ YFN ++ PK+ +T AK + ++F L + +PN RK LK I +
Sbjct: 517 EFAPYFNRETS--PKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRK-NVLLKTIIEQA 573
Query: 140 IKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV-------------------E 180
+R FTD+++++ED+KK G+ F HLPEGPT YFK++S
Sbjct: 574 KEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDNFFMYCLKS 633
Query: 181 VKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIF 240
+K G TSH PE+ILNNF TRLG + R+ + P +P GR+V+T HNQRDYIF
Sbjct: 634 LKLFYKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIF 693
Query: 241 FRRHRYVF-KDNERVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKP-EMDKEKKKFY 294
FR HRY F K+ + L ELGP+FTL+LK LQ+G + E EW K EM+ +++F+
Sbjct: 694 FRHHRYEFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFF 753
Query: 295 L 295
L
Sbjct: 754 L 754
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
Length = 394
Score = 152 bits (381), Expect = 5e-36
Identities = 112/267 (41%), Positives = 152/267 (55%), Gaps = 9/267 (3%)
Query: 11 NKLKRQEIFADIKHEKNKERHTMRRKRAKEE-RENPELREQRLKENVTQTIENTRVYD-E 68
NK +R ++ +K EK+K++ RR R K NP + L+E + N D E
Sbjct: 105 NKEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNE 164
Query: 69 TINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKF 128
+ KE++ DD YF + PK+ +T N +F L I PN VK +
Sbjct: 165 ELQKELQ--LDDFSSYFERSYE--PKVLITFADNPVTKTRKFGLELSRIFPN-ALVKIRN 219
Query: 129 GYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIV-GH 187
+K+I + FTD+VI+NED++K GL IHLP GPT +FKLS+ I H
Sbjct: 220 KSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDH 279
Query: 188 GRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYV 247
T H PE+ILNNF TRLG TVGR+ ++ +P+ GR+ +T HNQRDYIFFR HRY
Sbjct: 280 KEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYE 339
Query: 248 F-KDNERVGLQELGPQFTLKLKRLQRG 273
F K+ +RV L+ELGP+FTLKL+ LQ G
Sbjct: 340 FTKEGKRVKLRELGPRFTLKLRSLQEG 366
>emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans]
Length = 97
Score = 147 bits (368), Expect = 2e-34
Identities = 68/96 (70%), Positives = 88/96 (90%)
Query: 200 NNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERVGLQEL 259
NNF +RLG+TVGRLFQSI P P+++GRQVITLHNQRDYIFFRRHRY+F++ E+VGLQEL
Sbjct: 2 NNFNSRLGKTVGRLFQSIFPHKPELQGRQVITLHNQRDYIFFRRHRYIFRNEEKVGLQEL 61
Query: 260 GPQFTLKLKRLQRGIKEETEWEHKPEMDKEKKKFYL 295
GPQFTLKL+R+Q+G++ + WEH+P+M+++KKKFYL
Sbjct: 62 GPQFTLKLRRMQKGVRGDVVWEHRPDMERDKKKFYL 97
>gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumocystis carinii f. sp.
carinii]
Length = 277
Score = 138 bits (345), Expect = 9e-32
Identities = 103/301 (34%), Positives = 145/301 (47%), Gaps = 67/301 (22%)
Query: 23 KHEKNKERHTMRR------------------------KRAKEERENPELREQRLKENVTQ 58
K ++++ MRR ++ E ++ + +R K+
Sbjct: 15 KKKRDQGGQWMRRKEEKKRRKQGKKSILLNRTSGITWEKDFEGKKTDTIESKREKKEKNF 74
Query: 59 TIENTRVYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEIL 118
EN +Y+E KE ++ + FL N +K+ Y FA +
Sbjct: 75 VEENKGIYEEIREKE--------LKRIKRSGLYAKDFFLYQKKNRQKNTYFFAKEWPGLF 126
Query: 119 PNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSF 178
P F LK+ L IHLP GP+FYF +SS
Sbjct: 127 P-------IFQSWLKD------------------------SLIIIHLPSGPSFYFTISSI 155
Query: 179 VEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDY 238
I HGR TSHIPELI+NNF T LG TV +F+S+ P D EGRQV+T+HNQRD+
Sbjct: 156 TPTSCIYRHGRATSHIPELIINNFTTYLGLTVENMFRSLFPTQADFEGRQVVTIHNQRDF 215
Query: 239 IFFRRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKEE----TEWEHKPEMDKEKKKFY 294
IF RRHRY+FK++ +V LQELGP+FTLKL+RLQRGI + +E+KP + + +F+
Sbjct: 216 IFIRRHRYIFKNDIKVSLQELGPRFTLKLRRLQRGIHDRHADNVVYEYKPGEESNRTRFW 275
Query: 295 L 295
L
Sbjct: 276 L 276
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 110 bits (273), Expect = 2e-23
Identities = 81/284 (28%), Positives = 140/284 (48%), Gaps = 15/284 (5%)
Query: 14 KRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDETINKE 73
+R+ ++ E+ K + ++ K EN + + +K+++T ++ + DE ++
Sbjct: 9 RREYLYNKALTERLKSKQKIQETVVKSINENKAIGSKNVKKSLT-AYKSLKYADEGVDDR 67
Query: 74 VEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLK 133
DE ++ E PKI LTT+ N F L I+PN + R Y+L
Sbjct: 68 TVNDE------YHYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNRG-NYQLT 120
Query: 134 EISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSH 193
+ C N TD +I++E + L HLP GPT +F +S V I G +
Sbjct: 121 TLMHACRANNVTDFLIVHEHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDIGHMSEQ 180
Query: 194 IPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNER 253
P LI NNF+T +G ++ + + P P ++V++ N D I FR H+Y + N+
Sbjct: 181 KPHLIFNNFKTPIGLRTVKILKHLFPV-PKENSQRVMSFLNHNDSIIFRHHQYKYV-NKE 238
Query: 254 VGLQELGPQFTLKLKRLQRGIKE-----ETEWEHKPEMDKEKKK 292
+ L E+GP+F+LKL +++ G E +TEW ++P M+ +K+
Sbjct: 239 LELTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
1537-3735 [Arabidopsis thaliana]
gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
73469-75667 [Arabidopsis thaliana]
Length = 294
Score = 109 bits (271), Expect = 3e-23
Identities = 92/299 (30%), Positives = 149/299 (49%), Gaps = 28/299 (9%)
Query: 12 KLKRQEIFA---DIKHEKNKERHTMRRKRAKEERENP-ELR--EQRLKENVTQTIENTRV 65
+LK++ I+ + K E+ + R+ +E + P ELR E +L++ + +NT V
Sbjct: 7 RLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLEDQNTAV 66
Query: 66 YDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVK 125
I+ E Y N+ + PKI LTT+ N F L + PN +
Sbjct: 67 PRSHIDDE----------YANATEAD-PKILLTTSRNPSAPLIRFTKELKFVFPNSQRIN 115
Query: 126 RKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIV 185
R + EI + +FTD+++++E + GL HLP GPT YF L + V I
Sbjct: 116 RG-SQVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDIS 174
Query: 186 GH---GRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFR 242
G+ P LI NNF T++GQ VG + + I P P ++ ++++T NQ DYI FR
Sbjct: 175 DKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPA-PKLDAKRIVTFSNQSDYISFR 233
Query: 243 RHRYVFKDN--ERVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
H Y + + + L+E+GP+F L+L +++ G E E EW +P M+ KK+ ++
Sbjct: 234 NHVYDKGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
Length = 290
Score = 103 bits (254), Expect = 3e-21
Identities = 79/293 (26%), Positives = 140/293 (46%), Gaps = 23/293 (7%)
Query: 22 IKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQ------------TIENTRVYDET 69
++ + + R + RK + + + + Q +K+ + Q +++ YD++
Sbjct: 2 LRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQS 61
Query: 70 INKEVEGDE---DDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKR 126
+ + E D+ DD Y ++ P+I +TT+ + +FA + + PN + R
Sbjct: 62 LKESEEADDLQVDD--EYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119
Query: 127 KFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVG 186
Y + + D C K TD+V+++E + T LT H P GPT F L + V I+
Sbjct: 120 G-NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN 178
Query: 187 HGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRY 246
G + P LI +NF T LG+ V + + + P + +VIT N+ D+I R+H Y
Sbjct: 179 AGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVY 238
Query: 247 VFKDNERVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
V + E V + E+GP+F ++L L+ G E + EW+ + + KK YL
Sbjct: 239 V-RTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 98.0 bits (241), Expect = 1e-19
Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 20/288 (6%)
Query: 22 IKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDETINK---EVEGDE 78
I+ E R + RK +E++++ L E+R E + +EN D + K E+
Sbjct: 2 IRRENRLRREFIFRKSLEEKQKS--LEEKR--EKIRNALENNTKIDYNLRKDAIELAKGS 57
Query: 79 DDLMRYFNSNSN------EPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKL 132
D + + ++S + PKI +TT+ + FA + I PN + R Y +
Sbjct: 58 DWGGQQYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGH-YDV 116
Query: 133 KEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTS 192
K++ ++ TD++I E + G+ HLP GPT +F +++ V I G +
Sbjct: 117 KQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMSE 176
Query: 193 HIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNE 252
P LI +N ++LG + + + P P + +++IT N DYI FR H Y +++
Sbjct: 177 QYPHLIFDNLNSKLGHRFTTILKHLFPV-PKPDSKRIITFSNSEDYISFRHHVYKTENDG 235
Query: 253 RVGLQELGPQFTLKLKRLQRGIKE-----ETEWEHKPEMDKEKKKFYL 295
V L E GP+F LK +++ G E E EW + + +K+ +L
Sbjct: 236 EVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
Length = 287
Score = 95.3 bits (234), Expect = 8e-19
Identities = 75/282 (26%), Positives = 133/282 (46%), Gaps = 10/282 (3%)
Query: 15 RQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDETINKEV 74
R+E ++E+ E R+++ +E N L ++ + + T + D+ + +
Sbjct: 9 RKEFLERKQNERVHEAIHARKEQFREAVSNATPLPGHLHKDALRLKKFTELDDDQ-TRTL 67
Query: 75 EGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKE 134
+ DD Y N+ E P++ +TT+ + EFA + ++P+ + R +++
Sbjct: 68 QTSVDD--EYANAGV-EDPRVLVTTSREPSQKLLEFAKEIRLVIPSAVRMNRG-NLSVRQ 123
Query: 135 ISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHI 194
+ D + ++D+V++ E + LT HLP GPT F + + V I G +
Sbjct: 124 LMDAARRGQYSDVVVLQESQGVPDSLTVSHLPLGPTVVFTIHNLVTRHDIQDVGTMSEQH 183
Query: 195 PELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERV 254
P LI NF TRLG+ V + + + P P +V+T NQ D++ FR H + V
Sbjct: 184 PHLIFENFTTRLGRRVRDVLKFLFPV-PKPRPTRVLTFDNQNDFVSFRHHTFRAVKGREV 242
Query: 255 GLQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKK 292
L E+GP+ + R+ G E ETEW +P M+ KK+
Sbjct: 243 QLTEVGPRMDVAPYRITLGTLEMDDAETEWVLQPYMNTAKKR 284
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
Length = 289
Score = 92.2 bits (226), Expect = 8e-18
Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 17/264 (6%)
Query: 27 NKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDET--INKEVEGDEDDLMRY 84
N++R +R+ + N +L+E ++ YDE+ +E E + DD
Sbjct: 26 NEKRRALRKALEGNKELNKDLQED-------SQLQKDYKYDESRATQEETETNLDD---E 75
Query: 85 FNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNF 144
++ PK+ +TT+ +FA + ++PN + R + + + +
Sbjct: 76 YHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG-NIVVGSLVEAARANDI 134
Query: 145 TDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQT 204
TDIVI++E + GL HLP GPT F L + V I G + P LI N +
Sbjct: 135 TDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTS 194
Query: 205 RLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERVGLQELGPQFT 264
+LG+ V ++ P +P +V+T N DYI FR H Y +++ L E GP+F
Sbjct: 195 KLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYAKTGPKQIILSEAGPRFE 254
Query: 265 LKLKRLQRG----IKEETEWEHKP 284
+KL + G + + EW+ KP
Sbjct: 255 MKLFEITLGTVDMVDADVEWKLKP 278
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 88.3 bits (216), Expect = 9e-17
Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 21/283 (7%)
Query: 30 RHTMRRKRAKEERENPELRE-----QRLKENVTQTIENTRVYDETINKEVEGDEDDLMRY 84
R + K A+ + +LR + L + + E + +D ++++V GD D+
Sbjct: 15 RRALLLKEAEVAEKRAKLRSALASGKPLDPEIAKDKELRKDFDYDVSRDVNGDAIDIDDE 74
Query: 85 FNSNSNE-PPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRN 143
++ S P+I +TT+ + +F+ + +LP + R L+++ +N
Sbjct: 75 YSELSGVIDPRILVTTSRDPSSRLGQFSKEIRLLLPTSVRLNRG-NLVLEDLVGAAKAQN 133
Query: 144 FTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV---EVKKIVGHGRPTSHIPELILN 200
TD+V+++E + T +T H P GPT L + V ++ K + G + P LI
Sbjct: 134 LTDVVLLHEHRGVPTAMTISHFPHGPTLMVSLHNVVLRADIPKSI-KGTVSESYPRLIFE 192
Query: 201 NFQTRLGQTVGRLFQSILP-----QNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERVG 255
F T+LG+ V ++ + + P Q P++ G +VIT N D I R H YV + V
Sbjct: 193 GFSTKLGERVVKILKHLFPPREPTQKPNV-GNRVITFVNNDDTIEVRHHVYVRTSYDSVE 251
Query: 256 LQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFY 294
L E+GP+FT+K ++ G + +TEW +KK Y
Sbjct: 252 LSEVGPRFTMKPFKITMGTLDNKDADTEWHLSQYTRTSRKKNY 294
>emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta]
Length = 186
Score = 36.1 bits (82), Expect = 0.46
Identities = 36/172 (20%), Positives = 84/172 (47%), Gaps = 5/172 (2%)
Query: 97 LTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKK 156
+TT+ K+ + ++L + L + KR +K + + ++N +++ + E+ +
Sbjct: 7 ITTSKKPSKTLLKILHLLKKYLITPRYYKRN-KFKFRHLMIYLKRKNINNMIYLFENNNR 65
Query: 157 VTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQS 216
++ ++ E F +++ + +I PE+I NF+ + + ++
Sbjct: 66 YF-VSIVNFQENIHIKFGINNLLITSRI--SSIIYKDYPEIIYLNFKAQHEIYIQKVLTQ 122
Query: 217 ILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNER-VGLQELGPQFTLKL 267
IL Q + R+++ +++ + I+FR RY+F N R V +QE+GP+ K+
Sbjct: 123 ILYQVSPLTNRELLCIYSNKGIIYFRSFRYIFSKNLRDVKIQEIGPRLNFKI 174
>gb|AAC23588.1| (AF031931) cyclic GMP-dependent protein kinase [Hydra oligactis]
Length = 742
Score = 34.1 bits (77), Expect = 1.9
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 19 FADIKHEKNKERHTMRRKRAKEERENPEL-----------REQRLKENVTQTIENTRVYD 67
FA +KH K R +++K E +N +L +E R ++V + NT V +
Sbjct: 23 FARLKHLYPKLRQDLKKKDELIEEKNKKLSGYEIDILNLKKEIRQLQSVIEATRNTNVAN 82
Query: 68 ETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRK 127
+ I +E E + L R+ S N P F+ + + + + L N+ F K
Sbjct: 83 DVIVEEEEDNGILLSRHSLSQINHPKSRFIEVVKTVRNKRFAVSAESGKELQNLDFPKIP 142
Query: 128 FGYKLKE-ISDICIKRNF 144
++KE IS +K NF
Sbjct: 143 KSTEVKEFISQAVLKNNF 160
CPU time: 48.82 user secs. 1.17 sys. secs 49.99 total secs.
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.318 0.138 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115193391
Number of Sequences: 618844
Number of extensions: 5081655
Number of successful extensions: 23038
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 22386
Number of HSP's gapped (non-prelim): 513
length of query: 295
length of database: 195,544,254
effective HSP length: 57
effective length of query: 238
effective length of database: 160,270,146
effective search space: 38144294748
effective search space used: 38144294748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)