Sequences with E-value BETTER than threshold 565 e-160
318 6e-86
298 6e-80
252 3e-66
252 4e-66
245 5e-64
231 8e-60
136 4e-31
131 8e-30
125 6e-28
122 3e-27
121 1e-26
114 1e-24
114 1e-24
112 7e-24
107 1e-22
102 5e-21
69 5e-11
56 8e-07
52 6e-06
Sequences with E-value WORSE than threshold pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi ... 38 0.092
emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus sol... 38 0.099
pir||H71203 hypothetical protein PH1900 - Pyrococcus horikosh... 37 0.29
emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia t... 35 1.3
sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN ... 33 3.5
Alignments
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
Length = 290
Score = 565 bits (1440), Expect = e-160
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ
Sbjct: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
Query: 61 SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG
Sbjct: 61 SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
Query: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG
Sbjct: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
Query: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240
NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR
Sbjct: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240
Query: 241 TREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
TREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL
Sbjct: 241 TREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
Length = 295
Score = 318 bits (806), Expect = 6e-86
Identities = 167/298 (56%), Positives = 221/298 (74%), Gaps = 13/298 (4%)
Query: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
M+R+QAR+RR+YLYR+A L+++++ +KR ++ ALA GKPL E+A+D+ L+KDF YD
Sbjct: 1 MIRKQARQRRDYLYRRALLLKEAEVAEKRAKLRSALASGKPLDPEIAKDKELRKDFDYDV 60
Query: 61 SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
S D + +DDEY+ SG++DPRI+VTTSRDPS+RL QF+KEI+LL P +VRLNRG
Sbjct: 61 S--RDVNGDAIDIDDEYSELSGVIDPRILVTTSRDPSSRLGQFSKEIRLLLPTSVRLNRG 118
Query: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINA- 179
N V+ +LV A K TD+V+LHEHRGVPT++TISHFPHGPT SLHNVV+R DI +
Sbjct: 119 NLVLEDLVGAAKAQNLTDVVLLHEHRGVPTAMTISHFPHGPTLMVSLHNVVLRADIPKSI 178
Query: 180 -GNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSE------RVITFANRGDFIS 232
G SE P LIF+ F+T LG+RVV ILKHLF P++ ++ RVITF N D I
Sbjct: 179 KGTVSESYPRLIFEGFSTKLGERVVKILKHLFP--PREPTQKPNVGNRVITFVNNDDTIE 236
Query: 233 VRQHVYVRTR-EGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDY 289
VR HVYVRT + VE++EVGPRF M+ F++ +GTL+NKDAD EW L ++ RT+ KK+Y
Sbjct: 237 VRHHVYVRTSYDSVELSEVGPRFTMKPFKITMGTLDNKDADTEWHLSQYTRTSRKKNY 294
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
Length = 289
Score = 298 bits (755), Expect = 6e-80
Identities = 153/291 (52%), Positives = 215/291 (73%), Gaps = 5/291 (1%)
Query: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
MLRR RERR+++Y++ QELQ+++L +KR+ +++AL K L K+L ED LQKD++YD+
Sbjct: 1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDE 60
Query: 61 SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
S + ++E + +DDEY G +P+++VTTSR+PS+RL+QFAKE++LL PN+ RLNRG
Sbjct: 61 S-RATQEETETNLDDEYHRL-GEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG 118
Query: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
N V+ +LV+A + + TD+V+LHEHRG+P L ISH P+GPT FSLHNVV+RHDI N G
Sbjct: 119 NIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTG 178
Query: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240
SE PHLIF+N T+ LGKRV L LF PK + RV+TFAN D+IS R H+Y +
Sbjct: 179 TMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYAK 238
Query: 241 T-REGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
T + + ++E GPRFEM+LFE+ LGT++ DADVEW+L+ + R +K+D L
Sbjct: 239 TGPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPYQR--HKRDVL 287
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
1537-3735 [Arabidopsis thaliana]
gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
73469-75667 [Arabidopsis thaliana]
Length = 294
Score = 252 bits (638), Expect = 3e-66
Identities = 130/297 (43%), Positives = 205/297 (68%), Gaps = 12/297 (4%)
Query: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
M RR R ++EY+YRK+ E + ++ +++++I++AL +GKP+P EL +++ R +
Sbjct: 1 MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTEL---RNVEAKLRQEI 57
Query: 61 SLKESEEA-DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119
L++ A +DDEYA + DP+I++TTSR+PS L +F KE+K +FPN+ R+NR
Sbjct: 58 DLEDQNTAVPRSHIDDEYANATE-ADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINR 116
Query: 120 GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINA 179
G+ V+ +++ + TD++++HEHRGVP L ISH P GPTA F L NVV RHDI +
Sbjct: 117 GSQVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDK 176
Query: 180 ---GNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
G E PHLIF+NFTT +G+RV ILKH+F A PK D++R++TF+N+ D+IS R H
Sbjct: 177 KSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPA-PKLDAKRIVTFSNQSDYISFRNH 235
Query: 237 VYVRTREG---VEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
VY + G +E+ E+GPRFE+RL++++LGT+E +A++EW +R ++ T+ K+ ++
Sbjct: 236 VYDKGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
Length = 298
Score = 252 bits (637), Expect = 4e-66
Identities = 131/289 (45%), Positives = 197/289 (67%), Gaps = 9/289 (3%)
Query: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
MLR+QAR+RREYLY KA + Q+ ++ + +++ + K + ++++K +
Sbjct: 1 MLRKQARQRREYLYNKALTERLKSKQKIQETVVKSINENKAIGS-----KNVKKSLTAYK 55
Query: 61 SLKESEEA-DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119
SLK ++E DD V+DEY +G DP+I++TTS +PS+RL F KE++L+ PNA ++NR
Sbjct: 56 SLKYADEGVDDRTVNDEY-HYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNR 114
Query: 120 GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINA 179
GNY + L+ AC+ + TD +++HEHRG+P SL + H P+GPTA F++ +VVMRHDI +
Sbjct: 115 GNYQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDI 174
Query: 180 GNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYV 239
G+ SE PHLIF+NF T +G R V ILKHLF PK++S+RV++F N D I R H Y
Sbjct: 175 GHMSEQKPHLIFNNFKTPIGLRTVKILKHLFPV-PKENSQRVMSFLNHNDSIIFRHHQYK 233
Query: 240 RTREGVEIAEVGPRFEMRLFELRLGTLEN-KDADVEWQLRRFIRTANKK 287
+ +E+ EVGPRF ++L++++LGTLEN K AD EW R ++ T+ K+
Sbjct: 234 YVNKELELTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 245 bits (619), Expect = 5e-64
Identities = 137/296 (46%), Positives = 192/296 (64%), Gaps = 19/296 (6%)
Query: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
M+RR+ R RRE+++RK+ E + L++KR+ I+ AL + D +L+KD
Sbjct: 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKI------DYNLRKD----- 49
Query: 61 SLKESEEAD----DLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVR 116
+++ ++ +D + D EY +G DP+I++TTSRDPS+RL FAKE+KL+FPNA R
Sbjct: 50 AIELAKGSDWGGQQYETDSEY-RWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQR 108
Query: 117 LNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI 176
+NRG+Y + +V A K +TDL++ E RG P + + H P GPTA FS+ NVVMRHDI
Sbjct: 109 INRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDI 168
Query: 177 INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
N G SE PHLIFDN + LG R ILKHLF PK DS+R+ITF+N D+IS R H
Sbjct: 169 PNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPV-PKPDSKRIITFSNSEDYISFRHH 227
Query: 237 VYVRTREG-VEIAEVGPRFEMRLFELRLGTLEN-KDADVEWQLRRFIRTANKKDYL 290
VY +G VE+ E GPRFE++ ++++LGTLE A+ EW LR + TA K+ +L
Sbjct: 228 VYKTENDGEVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
Length = 287
Score = 231 bits (584), Expect = 8e-60
Identities = 134/294 (45%), Positives = 192/294 (64%), Gaps = 11/294 (3%)
Query: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
M R R R+E+L RK E + +++ ++A++ PLP L +D K F
Sbjct: 1 MRRSVIRVRKEFLERKQNERVHEAIHARKEQFREAVSNATPLPGHLHKDALRLKKF---- 56
Query: 61 SLKESEEADDLQ--VDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLN 118
+ + ++ LQ VDDEY A +G+ DPR++VTTSR+PS +L +FAKEI+L+ P+AVR+N
Sbjct: 57 TELDDDQTRTLQTSVDDEY-ANAGVEDPRVLVTTSREPSQKLLEFAKEIRLVIPSAVRMN 115
Query: 119 RGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN 178
RGN + L+DA ++ +D+VVL E +GVP SLT+SH P GPT F++HN+V RHDI +
Sbjct: 116 RGNLSVRQLMDAARRGQYSDVVVLQESQGVPDSLTVSHLPLGPTVVFTIHNLVTRHDIQD 175
Query: 179 AGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVY 238
G SE +PHLIF+NFTT LG+RV +LK LF PK RV+TF N+ DF+S R H +
Sbjct: 176 VGTMSEQHPHLIFENFTTRLGRRVRDVLKFLFPV-PKPRPTRVLTFDNQNDFVSFRHHTF 234
Query: 239 --VRTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
V+ RE V++ EVGPR ++ + + LGTLE DA+ EW L+ ++ TA K+ L
Sbjct: 235 RAVKGRE-VQLTEVGPRMDVAPYRITLGTLEMDDAETEWVLQPYMNTAKKRRLL 287
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
Length = 343
Score = 136 bits (339), Expect = 4e-31
Identities = 93/306 (30%), Positives = 158/306 (51%), Gaps = 26/306 (8%)
Query: 7 RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESE 66
+++R +Y A++ + +L+++++I + A+ + L EL E+ + + ++ +ES+
Sbjct: 42 KDKRSKVY--AKQKHEKKLEKQKKIRARDAAEKRAL--ELGEEPPQKMIPKTIENTRESD 97
Query: 67 EA----------DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVR 116
E D+ D+ + P++++TT R STR E+ + PN+
Sbjct: 98 ETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHY 157
Query: 117 LNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI 176
RG Y + +V+ K T L+V+H +R P +L I P+GPTA F L N+V+R DI
Sbjct: 158 QKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVLRKDI 217
Query: 177 INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
N GN + P L+ +NFTT LG RV + LF P RV+TF N+ DFI R H
Sbjct: 218 KNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIFFRHH 277
Query: 237 VYV------RTREGVE------IAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTA 284
Y+ ++ +G E + E GPRF ++L L+ GT + K + EW + + T+
Sbjct: 278 RYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTS 337
Query: 285 NKKDYL 290
++ +L
Sbjct: 338 RRRFFL 343
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
F44G4.1 (GB:Z49910) and several yeast hypothetical
proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
region (SP:P38805) [Arabidopsis thaliana]
Length = 434
Score = 131 bits (328), Expect = 8e-30
Identities = 92/311 (29%), Positives = 154/311 (48%), Gaps = 46/311 (14%)
Query: 7 RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYD------- 59
+++R +Y A++ + +L+++++I + A+ + L EL E+ ++ + F D
Sbjct: 42 KDKRSKVY--AKQKHEKKLEKQKKIRARDAAEKRAL--ELGEEVTIWRSFFRDFLKPPQK 97
Query: 60 ---QSLKESEEAD-------------DLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQF 103
++++ + E+D D+ D+ + P++++TT R STR
Sbjct: 98 MIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPAL 157
Query: 104 AKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPT-------SLTISH 156
E+ + PN+ RG Y + +V+ K T L+V+H +R P +L I
Sbjct: 158 ISELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPAFAISYVDALLIIG 217
Query: 157 FPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKK 216
P+GPTA F L N+V+R DI N GN + P L+ +NFTT LG RV + LF P
Sbjct: 218 LPNGPTAHFKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNF 277
Query: 217 DSERVITFANRGDFISVRQHVYV------RTREGVE------IAEVGPRFEMRLFELRLG 264
RV+TF N+ DFI R H Y+ ++ +G E + E GPRF ++L L+ G
Sbjct: 278 RGRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHG 337
Query: 265 TLENKDADVEW 275
T + K + EW
Sbjct: 338 TFDTKGGEFEW 348
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
Length = 394
Score = 125 bits (312), Expect = 6e-28
Identities = 84/272 (30%), Positives = 144/272 (52%), Gaps = 3/272 (1%)
Query: 7 RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESE 66
+E+R LY+K ++ + + Q+R+ ++A P + E Q + E
Sbjct: 106 KEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEE 165
Query: 67 EADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPN 126
+LQ+DD + +P++++T + +P T+ +F E+ +FPNA+ R +
Sbjct: 166 LQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKK 225
Query: 127 LVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQ-SEV 185
+ + ++ TD+V+++E R P L + H P+GPTA F L NV + DI + ++
Sbjct: 226 ICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKH 285
Query: 186 NPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVRTREG- 244
P +I +NFTT LG V +L LF+ P+ R +TF N+ D+I R H Y T+EG
Sbjct: 286 RPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGK 345
Query: 245 -VEIAEVGPRFEMRLFELRLGTLENKDADVEW 275
V++ E+GPRF ++L L+ GT ++K D W
Sbjct: 346 RVKLRELGPRFTLKLRSLQEGTFDSKTGDYAW 377
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
Length = 256
Score = 122 bits (305), Expect = 3e-27
Identities = 83/260 (31%), Positives = 139/260 (52%), Gaps = 12/260 (4%)
Query: 37 AQGKPLPKELAEDESLQKDFRYDQSLKE--SEEADDLQVDDEYAAT-SGIMDPRIIVTTS 93
A KP+PK ++ YD++ + EE + DE+A+ + P+I++TTS
Sbjct: 3 APPKPVPK------TIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTS 56
Query: 94 RDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLT 153
P R + +++ + PN+ R + ++ C TDL+V++E R P L
Sbjct: 57 DRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLI 116
Query: 154 ISHFPHGPTAQFSLHNVVMRHDIINAG-NQSEVNPHLIFDNFTTALGKRVVCILKHLFNA 212
+SH P+GPTA F + +V +R +I G + +E P +I +NFTT LG + + LF
Sbjct: 117 LSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPH 176
Query: 213 GPKKDSERVITFANRGDFISVRQHVYV-RTREGVEIAEVGPRFEMRLFELRLGTLENKDA 271
P+ +V TF N+ D+I R H Y+ R+ + V I E+GPRF ++L L+ GT ++K
Sbjct: 177 NPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYG 236
Query: 272 DVEWQLR-RFIRTANKKDYL 290
+ EW + R + T+ +K +L
Sbjct: 237 EYEWVHKPREMDTSRRKFHL 256
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
Length = 349
Score = 121 bits (301), Expect = 1e-26
Identities = 87/296 (29%), Positives = 155/296 (51%), Gaps = 18/296 (6%)
Query: 7 RERREYLYRKAQELQDSQLQQKRQIIKQAL------AQGKPLPKELAEDESLQKDFRYDQ 60
++RR ++ + ++ Q + ++ +K+ A KP+PK ++ YD+
Sbjct: 60 KQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPK------TIDNQRVYDE 113
Query: 61 SLKE--SEEADDLQVDDEYAAT-SGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRL 117
+ + EE + DE+A+ + P+I++TTS P R + +++ + PN+
Sbjct: 114 TTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVY 173
Query: 118 NRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDII 177
R + ++ C TDL+V++E R P L +SH P+GPTA F + +V +R +I
Sbjct: 174 YRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIK 233
Query: 178 NAG-NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
G + +E P +I +NFTT LG + + LF P+ +V TF N+ D+I R H
Sbjct: 234 RRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFH 293
Query: 237 VYV-RTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLR-RFIRTANKKDYL 290
Y+ R+ + V I E+GPRF ++L L+ GT ++K + EW + R + T+ +K +L
Sbjct: 294 RYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
Length = 754
Score = 114 bits (284), Expect = 1e-24
Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 28/309 (9%)
Query: 7 RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSL--KE 64
+ +R ++A Q +R I+ L + P + ES+++ YD ++ +E
Sbjct: 449 KSQRGKALKRALRKDKRARQGERAQIRDELGESAPQKEVPKTIESMRE---YDATMVNEE 505
Query: 65 SEEADDLQVDDEYAAT-SGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYV 123
+E + + +DE+A + P++++T + +F E++ PN+ R N +
Sbjct: 506 DDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL 565
Query: 124 MPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI------- 176
+ +++ K+ TDL+V+HE R P + H P GPTA F ++++ D+
Sbjct: 566 LKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDN 625
Query: 177 ------------INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITF 224
G + P +I +NF T LG + +L LF PK RV+TF
Sbjct: 626 FFMYCLKSLKLFYKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTF 685
Query: 225 ANRGDFISVRQHVYVRTREGVEIA--EVGPRFEMRLFELRLGTLENKDADVEWQLRRF-I 281
N+ D+I R H Y +EG + A E+GPRF +RL L+ GT + K + EW L+R +
Sbjct: 686 HNQRDYIFFRHHRYEFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEM 745
Query: 282 RTANKKDYL 290
T+ ++ +L
Sbjct: 746 ETSRRRFFL 754
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
Prot accession number P38805), contains similarity to
Pfam domain: PF01945 (Domain of unknown function),
Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
from this gene~cDNA EST EM>
Length = 746
Score = 114 bits (283), Expect = 1e-24
Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 28/309 (9%)
Query: 7 RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSL--KE 64
+ +R ++A Q +R I+ L + P + ES+++ YD ++ +E
Sbjct: 441 KSQRGKALKRALRKDKRARQGERAQIRDELGESAPQKEVPKTIESMRE---YDATMVNEE 497
Query: 65 SEEADDLQVDDEYAAT-SGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYV 123
+E + + +DE+A + P++++T + +F E++ PN+ R N +
Sbjct: 498 DDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL 557
Query: 124 MPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI------- 176
+ +++ K+ TDL+V+HE R P + H P GPTA F ++++ D+
Sbjct: 558 LKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDN 617
Query: 177 ------------INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITF 224
G + P +I +NF T LG + +L LF PK RV+TF
Sbjct: 618 FFMYCLKSLKLFYKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTF 677
Query: 225 ANRGDFISVRQHVYVRTREGVEIA--EVGPRFEMRLFELRLGTLENKDADVEWQLRRF-I 281
N+ D+I R H Y +EG + A E+GPRF +RL L+ GT + K + EW L+R +
Sbjct: 678 HNQRDYIFFRHHRYEFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEM 737
Query: 282 RTANKKDYL 290
T+ ++ +L
Sbjct: 738 ETSRRRFFL 746
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
pir||T38834 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
Length = 306
Score = 112 bits (277), Expect = 7e-24
Identities = 85/280 (30%), Positives = 146/280 (51%), Gaps = 16/280 (5%)
Query: 10 REYLYRKA-QELQDSQLQQKRQIIKQALAQGKPLPKELAED--ESLQKDFRYDQSLKESE 66
R+ Y KA + +L+++++ K+ + L+E+ +++ YD+++ E +
Sbjct: 10 RQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDK 69
Query: 67 EADDLQV---DDEYAA--TSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNA-VRLNRG 120
++LQ DDE++A + P+++VTTS+ S + FA E+ FPNA R G
Sbjct: 70 PDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTG 129
Query: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
+ + + +A K G TDL+VL+E R +LT+ H P+GP+ F+L N+ +I N G
Sbjct: 130 DIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHG 189
Query: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240
+ P LI +NF+T LG V + LF P+ +V+T + DF+ R+H Y
Sbjct: 190 RSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAF 249
Query: 241 TRE-------GVEIAEVGPRFEMRLFELRLGTLENKDADV 273
+ G + E+GPRF MRL ++ G + K+ +V
Sbjct: 250 REKSNMPDGIGTGLQELGPRFTMRLRMVQKGVWDRKEGEV 289
>emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipolytica]
Length = 333
Score = 107 bits (266), Expect = 1e-22
Identities = 83/294 (28%), Positives = 150/294 (50%), Gaps = 13/294 (4%)
Query: 2 LRRQARERREYLYRKAQ-ELQDSQLQQKRQIIKQALAQGKPLPKELAED--ESLQKDFRY 58
+R +E+R+ ++ + + +L + + +R+ K+ + K LAE+ ++++ Y
Sbjct: 48 IRIANKEKRKKVFAEMKHKLNKERHEMRRERAKEEAKNPELKEKRLAENVPDTIEAKRVY 107
Query: 59 DQSLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLN 118
D+++ + E +D EY P++++TTS+ + FA + + P +
Sbjct: 108 DETIAQEMEGED--EFKEYFEEG--KPPKVLITTSKRARGQAYDFADLLYDIIPGSEFKK 163
Query: 119 R-GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDII 177
R G++ M + C + TDLVV++E + LT H P GPT FS+ ++ M +I
Sbjct: 164 RVGDFTMTQIAKMCAERDYTDLVVINEDKKKVNGLTFIHLPEGPTMYFSVSSLKMPKEIK 223
Query: 178 NAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHV 237
G + P LI +NF+T LGK V + + +F P+ +V+T N+ D+I R+H
Sbjct: 224 GHGRSTTHIPELILNNFSTRLGKTVGRLFQSMFPQQPEFVGRQVVTLHNQRDWIFFRRHR 283
Query: 238 YV-RTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
YV + E V + E+GP+F +RL L+ G +VEW+ R + KK +L
Sbjct: 284 YVFKNEERVGLQELGPQFTLRLRRLQRGI----RGEVEWEHRSAMDKDKKKFHL 333
>ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae]
sp|P38805|YHO8_YEAST HYPOTHETICAL 35.1 KDA PROTEIN IN NAM8-GAR1 INTERGENIC REGION
pir||S46718 hypothetical protein YHR088w - yeast (Saccharomyces cerevisiae)
gb|AAB68926.1| (U00060) Yhr088wp [Saccharomyces cerevisiae]
Length = 295
Score = 102 bits (253), Expect = 5e-21
Identities = 79/293 (26%), Positives = 140/293 (46%), Gaps = 23/293 (7%)
Query: 2 LRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQS 61
++ + + R + RK + + + + Q +K+ + Q +++ YD++
Sbjct: 22 IKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQ------------TIENTRVYDET 69
Query: 62 LKESEEADDLQVDD--EYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119
+ + E D+ DD Y ++ P+I +TT+ + +FA + + PN + R
Sbjct: 70 INKEVEGDE---DDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKR 126
Query: 120 G-NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN 178
Y + + D C K TD+V+++E + T LT H P GPT F L + V I+
Sbjct: 127 KFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVG 186
Query: 179 AGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVY 238
G + P LI +NF T LG+ V + + + P + +VIT N+ D+I R+H Y
Sbjct: 187 HGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRY 246
Query: 239 V-RTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
V + E V + E+GP+F ++L L+ G E + EW+ + + KK YL
Sbjct: 247 VFKDNERVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
>gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumocystis carinii f. sp.
carinii]
Length = 277
Score = 69.2 bits (167), Expect = 5e-11
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 151 SLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLF 210
SL I H P GP+ F++ ++ I G + P LI +NFTT LG V + + LF
Sbjct: 136 SLIIIHLPSGPSFYFTISSITPTSCIYRHGRATSHIPELIINNFTTYLGLTVENMFRSLF 195
Query: 211 NAGPKKDSERVITFANRGDFISVRQHVYVRTRE-GVEIAEVGPRFEMRLFELRLGTLENK 269
+ +V+T N+ DFI +R+H Y+ + V + E+GPRF ++L L+ G + ++
Sbjct: 196 PTQADFEGRQVVTIHNQRDFIFIRRHRYIFKNDIKVSLQELGPRFTLKLRRLQRG-IHDR 254
Query: 270 DAD 272
AD
Sbjct: 255 HAD 257
>pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (strain K1)
dbj|BAA80440.1| (AP000061) 197aa long hypothetical protein [Aeropyrum pernix]
Length = 197
Score = 55.6 bits (132), Expect = 8e-07
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 81 SGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLV 140
SG+ RI+VTTSR PS R+ F K++ P A R RG+Y M L G +V
Sbjct: 9 SGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIV 68
Query: 141 VLHEHRGVP 149
V+ E RG P
Sbjct: 69 VVGERRGNP 77
>emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans]
Length = 97
Score = 52.4 bits (124), Expect = 6e-06
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 192 DNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYV-RTREGVEIAEV 250
+NF + LGK V + + +F P+ +VIT N+ D+I R+H Y+ R E V + E+
Sbjct: 2 NNFNSRLGKTVGRLFQSIFPHKPELQGRQVITLHNQRDYIFFRRHRYIFRNEEKVGLQEL 61
Query: 251 GPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
GP+F ++L ++ G DV W+ R + KK YL
Sbjct: 62 GPQFTLKLRRMQKGV----RGDVVWEHRPDMERDKKKFYL 97
>pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (strain Orsay)
emb|CAB49198.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 224
Score = 38.4 bits (88), Expect = 0.092
Identities = 17/66 (25%), Positives = 36/66 (53%)
Query: 88 IIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRG 147
+++TTS P+ R F +++ +FPN++ + RG + L+ G L++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 148 VPTSLT 153
P +T
Sbjct: 62 NPLKMT 67
>emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
emb|CAC23146.1| (AL512964) hypothetical [Sulfolobus solfataricus]
Length = 170
Score = 38.4 bits (88), Expect = 0.099
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 87 RIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
RI++T+SRDPS R F + + P++V++ RG
Sbjct: 7 RIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRG 40
>pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii
dbj|BAA31023.1| (AP000007) 334aa long hypothetical protein [Pyrococcus horikoshii]
Length = 224
Score = 36.9 bits (84), Expect = 0.29
Identities = 17/66 (25%), Positives = 35/66 (52%)
Query: 88 IIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRG 147
+++TTS P+ R F +++ + PN++ L RG + L+ G L++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 148 VPTSLT 153
P +T
Sbjct: 62 NPLKMT 67
>emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta]
Length = 186
Score = 34.9 bits (79), Expect = 1.3
Identities = 37/176 (21%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Query: 89 IVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGV 148
I+TTS+ PS L + +K R + +L+ K+ +++ L E+
Sbjct: 6 IITTSKKPSKTLLKILHLLKKYLITPRYYKRNKFKFRHLMIYLKRKNINNMIYLFENNN- 64
Query: 149 PTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKH 208
++I +F +F ++N+++ I + + P +I+ NF + +L
Sbjct: 65 RYFVSIVNFQENIHIKFGINNLLITSRISSIIYKDY--PEIIYLNFKAQHEIYIQKVLTQ 122
Query: 209 -LFNAGPKKDSERVITFANRG--DFISVRQHVYVRTREGVEIAEVGPRFEMRLFEL 261
L+ P + E + ++N+G F S R +++ + V+I E+GPR ++ +
Sbjct: 123 ILYQVSPLTNRELLCIYSNKGIIYFRSFR-YIFSKNLRDVKIQEIGPRLNFKILNI 177
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
pir||S44853 K12H4.3 protein - Caenorhabditis elegans
gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank: CE5D1 (Z14791),
CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
putative [Caenorhabditis elegans]
Length = 352
Score = 33.4 bits (75), Expect = 3.5
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 32/268 (11%)
Query: 14 YRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESEEADDLQV 73
+ K +++Q+ + ++ + A G + D + Q+ +E+ + +L
Sbjct: 4 FSKIKKVQEEESAHQKM---EWEAAGAKDSSSDDSSDESDNDDQPKQATEETRKRAELWT 60
Query: 74 DDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNA---VRLNRGNYVMPNLVDA 130
+ E R++V SR R K+IK L P+A +L++ + L +
Sbjct: 61 NRE----------RVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQ-QKSLNVLNEI 109
Query: 131 CKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVN-PHL 189
+ T ++ + T L +S+ GP+ +F +HNV ++ +GN + P L
Sbjct: 110 AEMKNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVL 169
Query: 190 IFDN---------FTTALGKRVVCILKHLFNAGPKKDSERVITFA-NRGDFISVRQHVYV 239
FD+ A+ + + H + P D V F+ GD I R V
Sbjct: 170 SFDDAFDKKPQLKLIKAVLMQTLGTPHHHPRSQPFVD--HVFNFSVGEGDKIWFRNFQIV 227
Query: 240 RTREGVEIAEVGPRFEMRLFELRLGTLE 267
E +++ EVGPRF + + L G+ E
Sbjct: 228 --DESLQLQEVGPRFVLEMVRLFAGSFE 253
CPU time: 38.91 user secs. 1.14 sys. secs 40.05 total secs.
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.320 0.136 0.386
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106189021
Number of Sequences: 618844
Number of extensions: 4354799
Number of successful extensions: 14390
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 14225
Number of HSP's gapped (non-prelim): 121
length of query: 290
length of database: 195,544,254
effective HSP length: 57
effective length of query: 233
effective length of database: 160,270,146
effective search space: 37342944018
effective search space used: 37342944018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 71 (32.1 bits)