Legend:
Sequences with E-value BETTER than threshold 526 e-148
483 e-135
473 e-132
433 e-120
430 e-119
409 e-113
386 e-106
373 e-102
259 4e-68
47 4e-04
Sequences with E-value WORSE than threshold pir||A72252 conserved hypothetical protein - Thermotoga maritima... 37 0.25
gb|AAF79734.1|AC005106_15 (AC005106) T25N20.14 [Arabidopsis thal... 34 3.7
dbj|BAA96932.1| (AB019231) gene_id:MGO3.1~unknown protein [Arabi... 33 4.8
ref|NP_048521.1| similar to E. coli hypothetical protein, corres... 33 4.8
dbj|BAB03916.1| (AP001507) BH0197~unknown conserved protein in o... 32 8.3
dbj|BAA75333.1| (AB011837) ORF10 [Bacillus halodurans] 32 8.3
Alignments
>ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae]
sp|P36160|YK61_YEAST HYPOTHETICAL 39.6 KDA PROTEIN IN MTD1-NUP133 INTERGENIC REGION
pir||S38159 hypothetical protein YKR081c - yeast (Saccharomyces cerevisiae)
emb|CAA81632.1| (Z27116) ORF YKR401 [Saccharomyces cerevisiae]
emb|CAA82160.1| (Z28306) ORF YKR081c [Saccharomyces cerevisiae]
Length = 344
Score = 526 bits (1341), Expect = e-148
Identities = 320/344 (93%), Positives = 320/344 (93%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF
Sbjct: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD
Sbjct: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH
Sbjct: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
Query: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP
Sbjct: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
Query: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKFXXX 300
SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKF
Sbjct: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKFDQG 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXGQEYEEEFVSATDIEPSAKRQKK 344
GQEYEEEFVSATDIEPSAKRQKK
Sbjct: 301 TEEGDGEVDEDYEDEASYSDDGQEYEEEFVSATDIEPSAKRQKK 344
>dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus]
Length = 306
Score = 483 bits (1231), Expect = e-135
Identities = 131/294 (44%), Positives = 171/294 (57%), Gaps = 12/294 (4%)
Query: 3 RTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNR 62
+ KPK RAKR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +
Sbjct: 6 KVRKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65
Query: 63 KNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNF 122
KN PFED + LEFFS+K+DCSL + + +KKR NN+ R + Y + DMIEL + + F
Sbjct: 66 KNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGI-EKF 124
Query: 123 KLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVI 182
L D K G KPM F G FD ++++K+L +DFFRG + +AGL++V+
Sbjct: 125 VSLKDIKTSKCPEGTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAGLEYVL 184
Query: 183 SMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSP 242
T V FR YKL KS G R PRIEL E+GP LD + R H S
Sbjct: 185 HFTALNG--------KVYFRSYKLLLKKS---GCRTPRIELEEMGPSLDLVMRRTHLASD 233
Query: 243 DMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSK 296
D+ + K PK L+ K +KN+ D G GRIHM KQDL KLQTRKMKGLK +
Sbjct: 234 DLYKLSMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQTRKMKGLKKR 287
>pir||T39206 hypothetical protein SPAC926.08c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB54156.1| (AL110469) hypothetical protein [Schizosaccharomyces pombe]
Length = 317
Score = 473 bits (1204), Expect = e-132
Identities = 156/295 (52%), Positives = 200/295 (66%), Gaps = 5/295 (1%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
M+R VKPKNAR KRAL KRE KLVE K A+F+ G + ++ D++ D+ ALKKP F
Sbjct: 1 MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNF 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
+KN+I PFED S LEFFSEKND +L V+ T +KKR +N+T++R F Y++ DMIEL +
Sbjct: 61 QKKNNILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIV- 119
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
N+K + F G KPM FQG FD HP Y+ IKSLFLDFFRGE D AGL +
Sbjct: 120 NYKSIQSFSATPIVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDSAGLSY 179
Query: 181 VISMT-IQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHT 239
VI ++ + + +PLP V FRVY K K+ LPR+EL E+GPR+DF I R+
Sbjct: 180 VIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTK---TNLPRVELEEMGPRIDFNIRRVQP 236
Query: 240 PSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLK 294
D++ EA KKPK E K KKNV++DI+G+K+GRIH+ +QDLG LQTRKMKGLK
Sbjct: 237 AESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQTRKMKGLK 291
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 433 bits (1101), Expect = e-120
Identities = 113/259 (43%), Positives = 148/259 (56%), Gaps = 12/259 (4%)
Query: 3 RTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNR 62
R VKPK RAKR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65
Query: 63 KNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNF 122
KN PFED + LEFFS+K+DCSL + + +KKR NN+ R + Y + DMIEL + +NF
Sbjct: 66 KNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGI-ENF 124
Query: 123 KLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVI 182
L D K G KPM F G FD Y+++KSL +DFFRG + +AGL++V+
Sbjct: 125 VSLKDIKNSKCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVL 184
Query: 183 SMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSP 242
T + FR YKL KS G R PRIEL E+GP LD + R H S
Sbjct: 185 HFTALNG--------KIYFRSYKLLLKKS---GCRTPRIELEEMGPSLDLVLRRTHLASD 233
Query: 243 DMVTEAHKKPKQLEMKTKK 261
D+ + K PK L+ K KK
Sbjct: 234 DLYKLSMKMPKALKPKKKK 252
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 430 bits (1094), Expect = e-119
Identities = 112/268 (41%), Positives = 148/268 (54%), Gaps = 12/268 (4%)
Query: 10 ARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPF 69
R KR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +KN PF
Sbjct: 2 KRVKRFLEKREPKLNENIKNAMLIKGGNANATVTQVLKDVCALKKPYGVLYKKKNVTRPF 61
Query: 70 EDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFK 129
ED + LE S+K+DCSL + + +KKR NN+ + Y + DMIEL + +NF L D K
Sbjct: 62 EDQTSLELLSKKSDCSLFMFGSYNKKRPNNLVIGHMYDYHVLDMIELGI-ENFVSLKDIK 120
Query: 130 KLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGD 189
G KPM F G F+ Y+++KSL DFFRG + +AGL++V+ T
Sbjct: 121 NSKCPEGTKPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAGLEYVLHFTALNG 180
Query: 190 FQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAH 249
+ FR YKL KS G R PRIEL EIGP L+ + R H S D+ T +
Sbjct: 181 --------KIYFRRYKLLLKKS---GCRTPRIELEEIGPSLNLVLRRTHLASDDLYTLSM 229
Query: 250 KKPKQLEMKTKKNVELDIMGDKLGRIHM 277
K PK L+ K KKN+ D G GRIHM
Sbjct: 230 KMPKALKPKKKKNISNDTFGTTYGRIHM 257
>gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces cerevisiae
hypothetical protein YKR081c (SP:P36160) [Caenorhabditis
elegans]
Length = 297
Score = 409 bits (1039), Expect = e-113
Identities = 111/295 (37%), Positives = 165/295 (55%), Gaps = 11/295 (3%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
M+R K K + KR LV R +K VEN K+ALF G N+ + M+DL +KKP +
Sbjct: 1 MVRVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKM 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
++ N H FED +P+ K D SL VL ++SKK+ N +TF RT+ ++ DM EL +
Sbjct: 61 DKHNPYHLFEDETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRIT- 119
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
++K S+F+ T+G KP +GAAF++ K+I +L +D+FRG D + GL+
Sbjct: 120 SYKSSSNFEAAKMTLGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRLEGLET 179
Query: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
VI T + N+ RVY+ KS PR+EL E+GP + F++ R
Sbjct: 180 VIVFTALDE-------TNLALRVYRPMLKKS---ATATPRVELAEMGPSISFEVMRKKLA 229
Query: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKS 295
+ A KKPK L K +KN+ D+ G++L R+H+GKQ +QTRK+K L+
Sbjct: 230 DDALFKLACKKPKALMKKRRKNLSEDVFGNQLARVHVGKQRTDDIQTRKVKALRK 284
>dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~similar to unknown
protein [Arabidopsis thaliana]
Length = 314
Score = 386 bits (980), Expect = e-106
Identities = 104/301 (34%), Positives = 156/301 (51%), Gaps = 18/301 (5%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
M+ PK +AKR L R KLVE K+ L + G + L +M +L LKK R+
Sbjct: 1 MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60
Query: 61 NRKND-IHPFED--MSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELM 117
+R+N+ I PFE + LEFFS+K DCS+ V + +KKR +N+ R + +++YD+IE+
Sbjct: 61 SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120
Query: 118 VADNFKLLSDF---KKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQD 174
+ +NFK L F KK G KP F G F+ K +K + D FRGE D +
Sbjct: 121 I-ENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLN 179
Query: 175 VAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKI 234
+ GL + P +F + + K + G +PR+ELVE+GP +D I
Sbjct: 180 LTGLDRAYVCSAIS--------PTKVFLTHC--ALKLKKSGSIVPRMELVEVGPSMDLVI 229
Query: 235 GRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQT-RKMKGL 293
R P+ ++ EA + K K +KNV+ D + K G+I+M Q L +++ K KG
Sbjct: 230 RRNRLPNDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGS 289
Query: 294 K 294
K
Sbjct: 290 K 290
>gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melanogaster]
Length = 289
Score = 373 bits (948), Expect = e-102
Identities = 107/265 (40%), Positives = 157/265 (58%), Gaps = 11/265 (4%)
Query: 31 LFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLM 90
LF+ G+ C N+ M DL ALKKP +K NRKNDI PF+D S LEF + KND +L
Sbjct: 2 LFLDGRKCGGNVKLCMKDLQALKKPLVKVLNRKNDITPFDDPSSLEFLTMKNDAALFTFG 61
Query: 91 TSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDT 150
++SKKR +N+ R F ++ DM EL + ++ +S+FK +KP F G +
Sbjct: 62 STSKKRPDNIILGRIFENEVLDMFELGIK-RYQAISEFKNEKIGACVKPCLVFNGPKWAQ 120
Query: 151 HPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYK 210
+++++LF+D F+ E D + G++HV+S T+ D N+L R Y++ K
Sbjct: 121 TEELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDDM-------NILMRSYRILLKK 173
Query: 211 SDQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGD 270
S G+R PRIEL EIGP DF I R S D+ +A K+PKQL++ KKN+ D +G+
Sbjct: 174 S---GQRTPRIELEEIGPSADFSIRRTKIASEDLYKQARKQPKQLKVGKKKNISTDALGN 230
Query: 271 KLGRIHMGKQDLGKLQTRKMKGLKS 295
GR+H+GKQ G +QTR++K L+
Sbjct: 231 TKGRVHLGKQQTGSIQTRRVKALRK 255
>dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 179
Score = 259 bits (655), Expect = 4e-68
Identities = 83/190 (43%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 95 KRKNNM--TFIRTFGYKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHP 152
KRK M F+ YK +++ + + G KPM FQG FD HP
Sbjct: 2 KRKGEMQKNFVTPSIYKTFNLTNVFIVQ---------ATPIVPGTKPMILFQGPVFDAHP 52
Query: 153 VYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTI-QGDFQDGEPLPNVLFRVYKLKSYKS 211
Y+ IKSLFLDFFRGE D AGL +VI ++ + + +PLP V FRVY K K+
Sbjct: 53 TYRHIKSLFLDFFRGEPIQKLDSAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKT 112
Query: 212 DQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDK 271
LPR+EL E+GPR+DF I R+ D++ EA KKPK E K KKNV++DI+G+K
Sbjct: 113 KTN---LPRVELEEMGPRIDFNIRRVQPAESDVLEEALKKPKTQEPKPKKNVDVDIIGNK 169
Query: 272 LGRIHMGKQD 281
+GRIH+ +QD
Sbjct: 170 VGRIHVDQQD 179
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 46.8 bits (109), Expect = 4e-04
Identities = 50/230 (21%), Positives = 90/230 (38%), Gaps = 30/230 (13%)
Query: 8 KNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSAL-----KKPDM---KR 59
K+ K + K N ++ L I + N ++ DLS L K+P + K
Sbjct: 11 KSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKD 70
Query: 60 FNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVA 119
+ N+I + + + FF + L + ++ + N I+ + ++ M EL
Sbjct: 71 LQQLNEIAELYNCNNVLFFEARKHQDLYLWLS----KPPNGPTIKFYIQNLHTMDELNFT 126
Query: 120 DNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQ 179
N G +P+ +F F++ P Y+ IK L + F + +
Sbjct: 127 GN-----------CLKGSRPVLSFD-QRFESSPHYQLIKELLVHNFCVPPNARKSKPFID 174
Query: 180 HVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPR 229
HV+S +I D + + K+ + + G+ I LVEIGPR
Sbjct: 175 HVMSFSIVDD----KIWVRTYEISHSTKNKEEYEDGEE--DISLVEIGPR 218
>pir||A72252 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36532.1|AE001797_12 (AE001797) conserved hypothetical protein [Thermotoga maritima]
Length = 285
Score = 37.4 bits (85), Expect = 0.25
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 175 VAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVE 225
+G++ ++ + + + +P V FR + + S + G+R+PRIE VE
Sbjct: 143 SSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVE 193
>gb|AAF79734.1|AC005106_15 (AC005106) T25N20.14 [Arabidopsis thaliana]
Length = 1465
Score = 33.5 bits (75), Expect = 3.7
Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 14/90 (15%)
Query: 60 FNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSS-KKRKNNMTFIRTFGYKIYDMIE--- 115
F + N PF ++S L+F ++N +L +LM + R NN R KIY I+
Sbjct: 960 FKKWNISIPFHNLSSLDFTGKENSAALGLLMQKNATARSNNEI--RM--VKIYSWIKSKS 1015
Query: 116 -LMVADN-FKLLS----DFKKLTFTVGLKP 139
L ++ N ++ L+ + KK +KP
Sbjct: 1016 ILGISYNLYEKLAGVKDEDKKTKMVREVKP 1045
>dbj|BAA96932.1| (AB019231) gene_id:MGO3.1~unknown protein [Arabidopsis thaliana]
Length = 292
Score = 33.1 bits (74), Expect = 4.8
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 247 EAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKS 295
E ++ K+ + K K N + D++ +K+ +Q + RK K K
Sbjct: 144 EERRERKKEKKKKKNNKDEDVVDEKVKEKLEDEQKSADRKERKKKKSKK 192
>ref|NP_048521.1| similar to E. coli hypothetical protein, corresponds to Swiss-Prot
Accession Number P39407 [Paramecium bursaria Chlorella
virus 1]
pir||T17664 probable aspartate carbamoyltransferase (EC 2.1.3.2) - Chlorella
virus PBCV-1
gb|AAC96541.1| (U42580) similar to E. coli hypothetical protein, corresponds to
Swiss-Prot Accession Number P39407 [Paramecium bursaria
Chlorella virus 1]
Length = 288
Score = 33.1 bits (74), Expect = 4.8
Identities = 20/72 (27%), Positives = 32/72 (43%), Gaps = 5/72 (6%)
Query: 31 LFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLM 90
+F+ G + +D + +L +K P R+N K P E + +FF SL+V
Sbjct: 185 IFVDGALTDAFPYDYVKNLPNVKNPLGIRYNSKEHESPIEINTIDKFFQ-----SLIVTA 239
Query: 91 TSSKKRKNNMTF 102
T K KN+
Sbjct: 240 TKDKFSKNSNVL 251
>dbj|BAB03916.1| (AP001507) BH0197~unknown conserved protein in others [Bacillus
halodurans]
Length = 119
Score = 32.4 bits (72), Expect = 8.3
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 164 FFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYK 205
F R E D V H+ SMT Q + L N +R K
Sbjct: 47 FMRREPVDDIWVVKRSHIRSMTSSEREQWTKRLDNKHYRTTK 88
>dbj|BAA75333.1| (AB011837) ORF10 [Bacillus halodurans]
Length = 119
Score = 32.4 bits (72), Expect = 8.3
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 164 FFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYK 205
F R E D V H+ SMT Q + L N +R K
Sbjct: 47 FMRREPVDDIWVVKRSHIRSMTSSEREQWTKRLDNKHYRTTK 88
CPU time: 43.85 user secs. 1.49 sys. secs 45.34 total secs.
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.270 0.0503 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135607981
Number of Sequences: 618844
Number of extensions: 5996072
Number of successful extensions: 14700
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14656
Number of HSP's gapped (non-prelim): 20
length of query: 344
length of database: 195,544,254
effective HSP length: 58
effective length of query: 286
effective length of database: 159,651,302
effective search space: 45660272372
effective search space used: 45660272372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 72 (32.4 bits)