Legend:
Sequences with E-value BETTER than threshold 521 e-147
477 e-134
459 e-128
413 e-114
409 e-113
402 e-111
373 e-102
369 e-101
264 1e-69
Sequences with E-value WORSE than threshold ref|NP_014565.1| Essential nucleolar protein required for biogen... 40 0.029
pir||A72252 conserved hypothetical protein - Thermotoga maritima... 35 0.95
ref|NP_048521.1| similar to E. coli hypothetical protein, corres... 33 3.5
Alignments
>ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae]
sp|P36160|YK61_YEAST HYPOTHETICAL 39.6 KDA PROTEIN IN MTD1-NUP133 INTERGENIC REGION
pir||S38159 hypothetical protein YKR081c - yeast (Saccharomyces cerevisiae)
emb|CAA81632.1| (Z27116) ORF YKR401 [Saccharomyces cerevisiae]
emb|CAA82160.1| (Z28306) ORF YKR081c [Saccharomyces cerevisiae]
Length = 344
Score = 521 bits (1330), Expect = e-147
Identities = 320/344 (93%), Positives = 320/344 (93%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF
Sbjct: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD
Sbjct: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH
Sbjct: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
Query: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP
Sbjct: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
Query: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKFXXX 300
SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKF
Sbjct: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKFDQG 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXGQEYEEEFVSATDIEPSAKRQKK 344
GQEYEEEFVSATDIEPSAKRQKK
Sbjct: 301 TEEGDGEVDEDYEDEASYSDDGQEYEEEFVSATDIEPSAKRQKK 344
>pir||T39206 hypothetical protein SPAC926.08c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB54156.1| (AL110469) hypothetical protein [Schizosaccharomyces pombe]
Length = 317
Score = 477 bits (1217), Expect = e-134
Identities = 157/295 (53%), Positives = 200/295 (67%), Gaps = 5/295 (1%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
M+R VKPKNAR KRAL KRE KLVE K A+F+ G + ++ D++ D+ ALKKP F
Sbjct: 1 MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNF 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
+KN+I PFED S LEFFSEKND +L V+ T +KKR +N+T++R F Y++ DMIEL +
Sbjct: 61 QKKNNILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIV- 119
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
N+K + F G KPM FQG FD HP Y+ IKSLFLDFFRGE D AGL +
Sbjct: 120 NYKSIQSFSATPIVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDSAGLSY 179
Query: 181 VISMTIQGDFQD-GEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHT 239
VI ++ +D +PLP V FRVY K K+ LPR+EL E+GPR+DF I R+
Sbjct: 180 VIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTK---TNLPRVELEEMGPRIDFNIRRVQP 236
Query: 240 PSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLK 294
D++ EA KKPK E K KKNV++DI+G+K+GRIH+ +QDLG LQTRKMKGLK
Sbjct: 237 AESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQTRKMKGLK 291
>dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus]
Length = 306
Score = 459 bits (1169), Expect = e-128
Identities = 131/294 (44%), Positives = 171/294 (57%), Gaps = 12/294 (4%)
Query: 3 RTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNR 62
+ KPK RAKR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +
Sbjct: 6 KVRKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65
Query: 63 KNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNF 122
KN PFED + LEFFS+K+DCSL + + +KKR NN+ R + Y + DMIEL + + F
Sbjct: 66 KNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGI-EKF 124
Query: 123 KLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVI 182
L D K G KPM F G FD ++++K+L +DFFRG + +AGL++V+
Sbjct: 125 VSLKDIKTSKCPEGTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAGLEYVL 184
Query: 183 SMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSP 242
T V FR YKL KS G R PRIEL E+GP LD + R H S
Sbjct: 185 HFTALNG--------KVYFRSYKLLLKKS---GCRTPRIELEEMGPSLDLVMRRTHLASD 233
Query: 243 DMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSK 296
D+ + K PK L+ K +KN+ D G GRIHM KQDL KLQTRKMKGLK +
Sbjct: 234 DLYKLSMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQTRKMKGLKKR 287
>gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces cerevisiae
hypothetical protein YKR081c (SP:P36160) [Caenorhabditis
elegans]
Length = 297
Score = 413 bits (1051), Expect = e-114
Identities = 111/295 (37%), Positives = 165/295 (55%), Gaps = 11/295 (3%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
M+R K K + KR LV R +K VEN K+ALF G N+ + M+DL +KKP +
Sbjct: 1 MVRVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKM 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
++ N H FED +P+ K D SL VL ++SKK+ N +TF RT+ ++ DM EL +
Sbjct: 61 DKHNPYHLFEDETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRIT- 119
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
++K S+F+ T+G KP +GAAF++ K+I +L +D+FRG D + GL+
Sbjct: 120 SYKSSSNFEAAKMTLGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRLEGLET 179
Query: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
VI T + N+ RVY+ KS PR+EL E+GP + F++ R
Sbjct: 180 VIVFTALDE-------TNLALRVYRPMLKKS---ATATPRVELAEMGPSISFEVMRKKLA 229
Query: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKS 295
+ A KKPK L K +KN+ D+ G++L R+H+GKQ +QTRK+K L+
Sbjct: 230 DDALFKLACKKPKALMKKRRKNLSEDVFGNQLARVHVGKQRTDDIQTRKVKALRK 284
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 409 bits (1041), Expect = e-113
Identities = 112/268 (41%), Positives = 148/268 (54%), Gaps = 12/268 (4%)
Query: 10 ARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPF 69
R KR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +KN PF
Sbjct: 2 KRVKRFLEKREPKLNENIKNAMLIKGGNANATVTQVLKDVCALKKPYGVLYKKKNVTRPF 61
Query: 70 EDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFK 129
ED + LE S+K+DCSL + + +KKR NN+ + Y + DMIEL + +NF L D K
Sbjct: 62 EDQTSLELLSKKSDCSLFMFGSYNKKRPNNLVIGHMYDYHVLDMIELGI-ENFVSLKDIK 120
Query: 130 KLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGD 189
G KPM F G F+ Y+++KSL DFFRG + +AGL++V+ T
Sbjct: 121 NSKCPEGTKPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAGLEYVLHFTALNG 180
Query: 190 FQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAH 249
+ FR YKL KS G R PRIEL EIGP L+ + R H S D+ T +
Sbjct: 181 --------KIYFRRYKLLLKKS---GCRTPRIELEEIGPSLNLVLRRTHLASDDLYTLSM 229
Query: 250 KKPKQLEMKTKKNVELDIMGDKLGRIHM 277
K PK L+ K KKN+ D G GRIHM
Sbjct: 230 KMPKALKPKKKKNISNDTFGTTYGRIHM 257
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 402 bits (1023), Expect = e-111
Identities = 106/247 (42%), Positives = 140/247 (55%), Gaps = 12/247 (4%)
Query: 3 RTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNR 62
R VKPK RAKR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65
Query: 63 KNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNF 122
KN PFED + LEFFS+K+DCSL + + +KKR NN+ R + Y + DMIEL + +NF
Sbjct: 66 KNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGI-ENF 124
Query: 123 KLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVI 182
L D K G KPM F G FD Y+++KSL +DFFRG + +AGL++V+
Sbjct: 125 VSLKDIKNSKCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVL 184
Query: 183 SMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSP 242
T + FR YKL KS G R PRIEL E+GP LD + R H S
Sbjct: 185 HFTALNG--------KIYFRSYKLLLKKS---GCRTPRIELEEMGPSLDLVLRRTHLASD 233
Query: 243 DMVTEAH 249
D+ +
Sbjct: 234 DLYKLSM 240
>gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melanogaster]
Length = 289
Score = 373 bits (949), Expect = e-102
Identities = 107/265 (40%), Positives = 157/265 (58%), Gaps = 11/265 (4%)
Query: 31 LFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLM 90
LF+ G+ C N+ M DL ALKKP +K NRKNDI PF+D S LEF + KND +L
Sbjct: 2 LFLDGRKCGGNVKLCMKDLQALKKPLVKVLNRKNDITPFDDPSSLEFLTMKNDAALFTFG 61
Query: 91 TSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDT 150
++SKKR +N+ R F ++ DM EL + ++ +S+FK +KP F G +
Sbjct: 62 STSKKRPDNIILGRIFENEVLDMFELGI-KRYQAISEFKNEKIGACVKPCLVFNGPKWAQ 120
Query: 151 HPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYK 210
+++++LF+D F+ E D + G++HV+S T+ D N+L R Y++ K
Sbjct: 121 TEELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDDM-------NILMRSYRILLKK 173
Query: 211 SDQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGD 270
S G+R PRIEL EIGP DF I R S D+ +A K+PKQL++ KKN+ D +G+
Sbjct: 174 S---GQRTPRIELEEIGPSADFSIRRTKIASEDLYKQARKQPKQLKVGKKKNISTDALGN 230
Query: 271 KLGRIHMGKQDLGKLQTRKMKGLKS 295
GR+H+GKQ G +QTR++K L+
Sbjct: 231 TKGRVHLGKQQTGSIQTRRVKALRK 255
>dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~similar to unknown
protein [Arabidopsis thaliana]
Length = 314
Score = 369 bits (938), Expect = e-101
Identities = 104/301 (34%), Positives = 156/301 (51%), Gaps = 18/301 (5%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
M+ PK +AKR L R KLVE K+ L + G + L +M +L LKK R+
Sbjct: 1 MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60
Query: 61 NRKN-DIHPFED--MSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELM 117
+R+N +I PFE + LEFFS+K DCS+ V + +KKR +N+ R + +++YD+IE+
Sbjct: 61 SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120
Query: 118 VADNFKLLSDF---KKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQD 174
+ +NFK L F KK G KP F G F+ K +K + D FRGE D +
Sbjct: 121 I-ENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLN 179
Query: 175 VAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKI 234
+ GL + P +F + + K + G +PR+ELVE+GP +D I
Sbjct: 180 LTGLDRAYVCSAIS--------PTKVFLTH--CALKLKKSGSIVPRMELVEVGPSMDLVI 229
Query: 235 GRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQT-RKMKGL 293
R P+ ++ EA + K K +KNV+ D + K G+I+M Q L +++ K KG
Sbjct: 230 RRNRLPNDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGS 289
Query: 294 K 294
K
Sbjct: 290 K 290
>dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 179
Score = 264 bits (668), Expect = 1e-69
Identities = 84/190 (44%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 95 KRKNNM--TFIRTFGYKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHP 152
KRK M F+ YK +++ + + G KPM FQG FD HP
Sbjct: 2 KRKGEMQKNFVTPSIYKTFNLTNVFIVQ---------ATPIVPGTKPMILFQGPVFDAHP 52
Query: 153 VYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDFQD-GEPLPNVLFRVYKLKSYKS 211
Y+ IKSLFLDFFRGE D AGL +VI ++ +D +PLP V FRVY K K+
Sbjct: 53 TYRHIKSLFLDFFRGEPIQKLDSAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKT 112
Query: 212 DQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDK 271
LPR+EL E+GPR+DF I R+ D++ EA KKPK E K KKNV++DI+G+K
Sbjct: 113 K---TNLPRVELEEMGPRIDFNIRRVQPAESDVLEEALKKPKTQEPKPKKNVDVDIIGNK 169
Query: 272 LGRIHMGKQD 281
+GRIH+ +QD
Sbjct: 170 VGRIHVDQQD 179
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 40.4 bits (94), Expect = 0.029
Identities = 52/230 (22%), Positives = 91/230 (38%), Gaps = 30/230 (13%)
Query: 8 KNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSAL-----KKP--DMKR- 59
K+ K + K N ++ L I + N ++ DLS L K+P D K+
Sbjct: 11 KSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKD 70
Query: 60 FNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVA 119
+ N+I + + + FF + L + ++ K N T + + ++ M EL
Sbjct: 71 LQQLNEIAELYNCNNVLFFEARKHQDLYLWLS---KPPNGPTI-KFYIQNLHTMDELNFT 126
Query: 120 DNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQ 179
N G +P+ +F F++ P Y+ IK L + F + +
Sbjct: 127 GN-----------CLKGSRPVLSFD-QRFESSPHYQLIKELLVHNFCVPPNARKSKPFID 174
Query: 180 HVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPR 229
HV+S +I D + + K+ + + G+ I LVEIGPR
Sbjct: 175 HVMSFSIVDD----KIWVRTYEISHSTKNKEEYEDGEE--DISLVEIGPR 218
>pir||A72252 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36532.1|AE001797_12 (AE001797) conserved hypothetical protein [Thermotoga maritima]
Length = 285
Score = 35.4 bits (81), Expect = 0.95
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 175 VAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVE 225
+G++ ++ + + + +P V FR + + S + G+R+PRIE VE
Sbjct: 143 SSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVE 193
>ref|NP_048521.1| similar to E. coli hypothetical protein, corresponds to Swiss-Prot
Accession Number P39407 [Paramecium bursaria Chlorella
virus 1]
pir||T17664 probable aspartate carbamoyltransferase (EC 2.1.3.2) - Chlorella
virus PBCV-1
gb|AAC96541.1| (U42580) similar to E. coli hypothetical protein, corresponds to
Swiss-Prot Accession Number P39407 [Paramecium bursaria
Chlorella virus 1]
Length = 288
Score = 33.4 bits (76), Expect = 3.5
Identities = 21/73 (28%), Positives = 34/73 (45%), Gaps = 7/73 (9%)
Query: 31 LFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFEDMSPLEFFS-EKNDCSLMVL 89
+F+ G + +D + +L +K P R+N K E SP+E + +K SL+V
Sbjct: 185 IFVDGALTDAFPYDYVKNLPNVKNPLGIRYNSK------EHESPIEINTIDKFFQSLIVT 238
Query: 90 MTSSKKRKNNMTF 102
T K KN+
Sbjct: 239 ATKDKFSKNSNVL 251
CPU time: 43.26 user secs. 1.56 sys. secs 44.82 total secs.
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.311 0.167 0.492
Gapped
Lambda K H
0.270 0.0586 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134681897
Number of Sequences: 618844
Number of extensions: 5874123
Number of successful extensions: 14049
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14005
Number of HSP's gapped (non-prelim): 22
length of query: 344
length of database: 195,544,254
effective HSP length: 58
effective length of query: 286
effective length of database: 159,651,302
effective search space: 45660272372
effective search space used: 45660272372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.0 bits)
S2: 72 (32.1 bits)