Sequences with E-value BETTER than threshold 639 0.0
297 1e-79
231 9e-60
199 5e-50
194 2e-48
190 2e-47
187 2e-46
157 2e-37
147 2e-34
Sequences with E-value WORSE than threshold emb|CAB62866.1| (AL035475) hypothetical protein, MAL4P2.25 [P... 37 0.30
pir||B82940 conserved hypothetical membrane lipoprotein UU045... 33 5.9
Alignments
>ref|NP_013007.1| Ykr081cp [Saccharomyces cerevisiae]
sp|P36160|YK61_YEAST HYPOTHETICAL 39.6 KDA PROTEIN IN MTD1-NUP133 INTERGENIC REGION
pir||S38159 hypothetical protein YKR081c - yeast (Saccharomyces cerevisiae)
emb|CAA81632.1| (Z27116) ORF YKR401 [Saccharomyces cerevisiae]
emb|CAA82160.1| (Z28306) ORF YKR081c [Saccharomyces cerevisiae]
Length = 344
Score = 639 bits (1630), Expect = 0.0
Identities = 320/344 (93%), Positives = 320/344 (93%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF
Sbjct: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD
Sbjct: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH
Sbjct: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
Query: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP
Sbjct: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
Query: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKFXXX 300
SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKF
Sbjct: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKFDQG 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXGQEYEEEFVSATDIEPSAKRQKK 344
GQEYEEEFVSATDIEPSAKRQKK
Sbjct: 301 TEEGDGEVDEDYEDEASYSDDGQEYEEEFVSATDIEPSAKRQKK 344
>pir||T39206 hypothetical protein SPAC926.08c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB54156.1| (AL110469) hypothetical protein [Schizosaccharomyces pombe]
Length = 317
Score = 297 bits (753), Expect = 1e-79
Identities = 156/295 (52%), Positives = 200/295 (66%), Gaps = 5/295 (1%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
M+R VKPKNAR KRAL KRE KLVE K A+F+ G + ++ D++ D+ ALKKP F
Sbjct: 1 MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNF 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
+KN+I PFED S LEFFSEKND +L V+ T +KKR +N+T++R F Y++ DMIEL +
Sbjct: 61 QKKNNILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIV- 119
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
N+K + F G KPM FQG FD HP Y+ IKSLFLDFFRGE D AGL +
Sbjct: 120 NYKSIQSFSATPIVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDSAGLSY 179
Query: 181 VISMT-IQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHT 239
VI ++ + + +PLP V FRVY K K+ LPR+EL E+GPR+DF I R+
Sbjct: 180 VIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTK---TNLPRVELEEMGPRIDFNIRRVQP 236
Query: 240 PSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLK 294
D++ EA KKPK E K KKNV++DI+G+K+GRIH+ +QDLG LQTRKMKGLK
Sbjct: 237 AESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQTRKMKGLK 291
>dbj|BAA95117.1| (AB041810) unnamed protein product [Mus musculus]
Length = 306
Score = 231 bits (583), Expect = 9e-60
Identities = 131/291 (45%), Positives = 170/291 (58%), Gaps = 12/291 (4%)
Query: 6 KPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKND 65
KPK RAKR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +KN
Sbjct: 9 KPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKKKNI 68
Query: 66 IHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLL 125
PFED + LEFFS+K+DCSL + + +KKR NN+ R + Y + DMIEL + + F L
Sbjct: 69 TRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGI-EKFVSL 127
Query: 126 SDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMT 185
D K G KPM F G FD ++++K+L +DFFRG + +AGL++V+ T
Sbjct: 128 KDIKTSKCPEGTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAGLEYVLHFT 187
Query: 186 IQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMV 245
V FR YKL KS G R PRIEL E+GP LD + R H S D+
Sbjct: 188 ALNG--------KVYFRSYKLLLKKS---GCRTPRIELEEMGPSLDLVMRRTHLASDDLY 236
Query: 246 TEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLKSK 296
+ K PK L+ K +KN+ D G GRIHM KQDL KLQTRKMKGLK +
Sbjct: 237 KLSMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQTRKMKGLKKR 287
>gb|AAF55514.1| (AE003721) CG7993 gene product [Drosophila melanogaster]
Length = 289
Score = 199 bits (500), Expect = 5e-50
Identities = 107/264 (40%), Positives = 157/264 (58%), Gaps = 11/264 (4%)
Query: 31 LFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLM 90
LF+ G+ C N+ M DL ALKKP +K NRKNDI PF+D S LEF + KND +L
Sbjct: 2 LFLDGRKCGGNVKLCMKDLQALKKPLVKVLNRKNDITPFDDPSSLEFLTMKNDAALFTFG 61
Query: 91 TSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDT 150
++SKKR +N+ R F ++ DM EL + ++ +S+FK +KP F G +
Sbjct: 62 STSKKRPDNIILGRIFENEVLDMFELGIK-RYQAISEFKNEKIGACVKPCLVFNGPKWAQ 120
Query: 151 HPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYK 210
+++++LF+D F+ E D + G++HV+S T+ D N+L R Y++ K
Sbjct: 121 TEELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDDM-------NILMRSYRILLKK 173
Query: 211 SDQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGD 270
S G+R PRIEL EIGP DF I R S D+ +A K+PKQL++ KKN+ D +G+
Sbjct: 174 S---GQRTPRIELEEIGPSADFSIRRTKIASEDLYKQARKQPKQLKVGKKKNISTDALGN 230
Query: 271 KLGRIHMGKQDLGKLQTRKMKGLK 294
GR+H+GKQ G +QTR++K L+
Sbjct: 231 TKGRVHLGKQQTGSIQTRRVKALR 254
>dbj|BAB14983.1| (AK024740) unnamed protein product [Homo sapiens]
Length = 253
Score = 194 bits (487), Expect = 2e-48
Identities = 113/259 (43%), Positives = 148/259 (56%), Gaps = 12/259 (4%)
Query: 3 RTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNR 62
R VKPK RAKR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65
Query: 63 KNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNF 122
KN PFED + LEFFS+K+DCSL + + +KKR NN+ R + Y + DMIEL + +NF
Sbjct: 66 KNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGI-ENF 124
Query: 123 KLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVI 182
L D K G KPM F G FD Y+++KSL +DFFRG + +AGL++V+
Sbjct: 125 VSLKDIKNSKCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVL 184
Query: 183 SMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSP 242
T + FR YKL KS G R PRIEL E+GP LD + R H S
Sbjct: 185 HFTALNG--------KIYFRSYKLLLKKS---GCRTPRIELEEMGPSLDLVLRRTHLASD 233
Query: 243 DMVTEAHKKPKQLEMKTKK 261
D+ + K PK L+ K KK
Sbjct: 234 DLYKLSMKMPKALKPKKKK 252
>emb|CAC11120.1| (AL357374) bA353C18.4 (novel protein) [Homo sapiens]
Length = 257
Score = 190 bits (478), Expect = 2e-47
Identities = 112/267 (41%), Positives = 148/267 (54%), Gaps = 12/267 (4%)
Query: 11 RAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFE 70
R KR L KRE KL EN+K A+ I G + N + ++ D+ ALKKP + +KN PFE
Sbjct: 3 RVKRFLEKREPKLNENIKNAMLIKGGNANATVTQVLKDVCALKKPYGVLYKKKNVTRPFE 62
Query: 71 DMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFKK 130
D + LE S+K+DCSL + + +KKR NN+ + Y + DMIEL + +NF L D K
Sbjct: 63 DQTSLELLSKKSDCSLFMFGSYNKKRPNNLVIGHMYDYHVLDMIELGI-ENFVSLKDIKN 121
Query: 131 LTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDF 190
G KPM F G F+ Y+++KSL DFFRG + +AGL++V+ T
Sbjct: 122 SKCPEGTKPMLIFAGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAGLEYVLHFTALNG- 180
Query: 191 QDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHK 250
+ FR YKL KS G R PRIEL EIGP L+ + R H S D+ T + K
Sbjct: 181 -------KIYFRRYKLLLKKS---GCRTPRIELEEIGPSLNLVLRRTHLASDDLYTLSMK 230
Query: 251 KPKQLEMKTKKNVELDIMGDKLGRIHM 277
PK L+ K KKN+ D G GRIHM
Sbjct: 231 MPKALKPKKKKNISNDTFGTTYGRIHM 257
>gb|AAF60765.1| (AC024810) contains similarity to Saccharomyces cerevisiae
hypothetical protein YKR081c (SP:P36160) [Caenorhabditis
elegans]
Length = 297
Score = 187 bits (469), Expect = 2e-46
Identities = 111/294 (37%), Positives = 165/294 (55%), Gaps = 11/294 (3%)
Query: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
M+R K K + KR LV R +K VEN K+ALF G N+ + M+DL +KKP +
Sbjct: 1 MVRVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKM 60
Query: 61 NRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVAD 120
++ N H FED +P+ K D SL VL ++SKK+ N +TF RT+ ++ DM EL +
Sbjct: 61 DKHNPYHLFEDETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRIT- 119
Query: 121 NFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQH 180
++K S+F+ T+G KP +GAAF++ K+I +L +D+FRG D + GL+
Sbjct: 120 SYKSSSNFEAAKMTLGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRLEGLET 179
Query: 181 VISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIGRIHTP 240
VI T + N+ RVY+ KS PR+EL E+GP + F++ R
Sbjct: 180 VIVFTALDE-------TNLALRVYRPMLKKS---ATATPRVELAEMGPSISFEVMRKKLA 229
Query: 241 SPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQTRKMKGLK 294
+ A KKPK L K +KN+ D+ G++L R+H+GKQ +QTRK+K L+
Sbjct: 230 DDALFKLACKKPKALMKKRRKNLSEDVFGNQLARVHVGKQRTDDIQTRKVKALR 283
>dbj|BAB02781.1| (AB023036) emb|CAB54156.1~gene_id:MDB19.11~similar to unknown
protein [Arabidopsis thaliana]
Length = 314
Score = 157 bits (392), Expect = 2e-37
Identities = 106/300 (35%), Positives = 157/300 (52%), Gaps = 20/300 (6%)
Query: 2 IRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFN 61
IRT PK +AKR L R KLVE K+ L + G + L +M +L LKK R++
Sbjct: 4 IRT--PKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRYS 61
Query: 62 RKND-IHPFED--MSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMV 118
R+N+ I PFE + LEFFS+K DCS+ V + +KKR +N+ R + +++YD+IE+ +
Sbjct: 62 RRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVGI 121
Query: 119 ADNFKLLSDF---KKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDV 175
+NFK L F KK G KP F G F+ K +K + D FRGE D ++
Sbjct: 122 -ENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180
Query: 176 AGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKIG 235
GL + P +F + + K + G +PR+ELVE+GP +D I
Sbjct: 181 TGLDRAYVCSAIS--------PTKVFLTHC--ALKLKKSGSIVPRMELVEVGPSMDLVIR 230
Query: 236 RIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQT-RKMKGLK 294
R P+ ++ EA + K K +KNV+ D + K G+I+M Q L +++ K KG K
Sbjct: 231 RNRLPNDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSK 290
>dbj|BAA87188.1| (AB027884) Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 179
Score = 147 bits (367), Expect = 2e-34
Identities = 83/190 (43%), Positives = 112/190 (58%), Gaps = 15/190 (7%)
Query: 95 KRKNNM--TFIRTFGYKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHP 152
KRK M F+ YK +++ + + ++ G KPM FQG FD HP
Sbjct: 2 KRKGEMQKNFVTPSIYKTFNLTNVFIVQATPIVP---------GTKPMILFQGPVFDAHP 52
Query: 153 VYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTI-QGDFQDGEPLPNVLFRVYKLKSYKS 211
Y+ IKSLFLDFFRGE D AGL +VI ++ + + +PLP V FRVY K K+
Sbjct: 53 TYRHIKSLFLDFFRGEPIQKLDSAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKT 112
Query: 212 DQGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDK 271
LPR+EL E+GPR+DF I R+ D++ EA KKPK E K KKNV++DI+G+K
Sbjct: 113 KTN---LPRVELEEMGPRIDFNIRRVQPAESDVLEEALKKPKTQEPKPKKNVDVDIIGNK 169
Query: 272 LGRIHMGKQD 281
+GRIH+ +QD
Sbjct: 170 VGRIHVDQQD 179
>emb|CAB62866.1| (AL035475) hypothetical protein, MAL4P2.25 [Plasmodium falciparum]
Length = 693
Score = 37.1 bits (84), Expect = 0.30
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 26 NVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFEDMSP--LEFFSEKND 83
N+K + G CN L+ + D++A KR N +N I + + + + ND
Sbjct: 491 NIKNVFIVGGVGCNNFLYQSLKDMAA------KRDNEENQIKEYNRLRKRLRKKMKKIND 544
Query: 84 CSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFKKLTF 133
L VL S K++ + + +KIY L + +LS FK F
Sbjct: 545 EKLSVLKISKDSLKSDHDYNSSLSWKIYLKNLLKKRKSKDILSTFKLFNF 594
>pir||B82940 conserved hypothetical membrane lipoprotein UU045 [imported] -
Ureaplasma urealyticum
gb|AAF30450.1|AE002104_3 (AE002104) conserved hypothetical membrane lipoprotein [Ureaplasma
urealyticum]
Length = 834
Score = 32.8 bits (73), Expect = 5.9
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 50 SALKKPDMKR-FNRKNDI-HPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFG 107
S+++K ++K+ N ND+ +D+ F S K+ L+V T K + G
Sbjct: 59 SSVQKDEIKKPLNLPNDVVFSVKDV----FVSHKDQSVLIVKYTLKKGNEIQEYTYEIKG 114
Query: 108 YKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQI--KSLFLDFF 165
+K + +V D + DFKK+ + LK F F+ AAF Y Q+ ++ +++
Sbjct: 115 FKSVYEKDKIVNDLSQANEDFKKIVNNIRLKDTFDFKLAAFPNQN-YDQLLPSQIYKNYY 173
Query: 166 RG 167
+G
Sbjct: 174 QG 175
CPU time: 33.15 user secs. 0.85 sys. secs 34.00 total secs.
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114201698
Number of Sequences: 618844
Number of extensions: 4599809
Number of successful extensions: 9460
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9429
Number of HSP's gapped (non-prelim): 13
length of query: 344
length of database: 195,544,254
effective HSP length: 58
effective length of query: 286
effective length of database: 159,651,302
effective search space: 45660272372
effective search space used: 45660272372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 72 (32.5 bits)