Sequences with E-value BETTER than threshold
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58012|Y594_METJA HYPOTHETICAL PROTEIN MJ0594 >gi|2128398|... 302 1e-81
pir||F69190 conserved hypothetical protein MTH680 - Methanoba... 59 3e-08
ref|NP_069935.1| conserved hypothetical protein [Archaeoglobu... 58 6e-08
pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (... 54 1e-06
pir||H71203 hypothetical protein PH1900 - Pyrococcus horikosh... 47 1e-04
pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi ... 45 4e-04
Sequences with E-value WORSE than threshold
emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus sol... 35 0.61
sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN... 33 2.3
ref|NP_014227.1| subunit of ubiquitin- protein ligase; Apc1p ... 32 4.3
Alignments
>sp|Q58012|Y594_METJA HYPOTHETICAL PROTEIN MJ0594
pir||B64374 hypothetical protein MJ0594 - Methanococcus jannaschii
gb|AAB98595.1| (U67508) M. jannaschii predicted coding region MJ0594
[Methanococcus jannaschii]
Length = 169
Score = 302 bits (767), Expect = 1e-81
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLV 60
MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLV
Sbjct: 1 MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLV 60
Query: 61 VYDVENEKRLSSFISVKLQREICGEKIYNDDGIRIKISRELKDNEEFQKYYEIYDEFLFQ 120
VYDVENEKRLSSFISVKLQREICGEKIYNDDGIRIKISRELKDNEEFQKYYEIYDEFLFQ
Sbjct: 61 VYDVENEKRLSSFISVKLQREICGEKIYNDDGIRIKISRELKDNEEFQKYYEIYDEFLFQ 120
Query: 121 HLNINEDSDITLRLEKDPKYLFAIQFYKGRVKIGPLIRIKSIKLFDSLL 169
HLNINEDSDITLRLEKDPKYLFAIQFYKGRVKIGPLIRIKSIKLFDSLL
Sbjct: 121 HLNINEDSDITLRLEKDPKYLFAIQFYKGRVKIGPLIRIKSIKLFDSLL 169
>pir||F69190 conserved hypothetical protein MTH680 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85185.1| (AE000848) conserved protein [Methanothermobacter
thermautotrophicus]
Length = 155
Score = 59.1 bits (141), Expect = 3e-08
Identities = 30/70 (42%), Positives = 43/70 (60%), Gaps = 1/70 (1%)
Query: 1 MILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIF-EIDKHVLLIGEFKANPGTL 59
M+LTTSRKPSQRTRSF++ L R + Y+ RGK+SL+++ E V ++ E NP +
Sbjct: 1 MLLTTSRKPSQRTRSFSQRLSRIMGWRYINRGKMSLRDVLIEARGPVAVVSERHGNPARI 60
Query: 60 VVYDVENEKR 69
D +R
Sbjct: 61 TFLDERGGER 70
>ref|NP_069935.1| conserved hypothetical protein [Archaeoglobus fulgidus]
pir||A69388 conserved hypothetical protein AF1106 - Archaeoglobus fulgidus
gb|AAB90132.1| (AE001027) conserved hypothetical protein [Archaeoglobus
fulgidus]
Length = 153
Score = 57.9 bits (138), Expect = 6e-08
Identities = 30/62 (48%), Positives = 41/62 (65%)
Query: 2 ILTTSRKPSQRTRSFARDLERTLNIPYVQRGKLSLKEIFEIDKHVLLIGEFKANPGTLVV 61
+LTTSRKP ++TR FA+ L R N YV RGKLSL+++ I + +I E K NP L +
Sbjct: 3 VLTTSRKPGRKTRRFAKVLARFFNWKYVNRGKLSLEDLAGIAERFWIISEVKGNPAILNL 62
Query: 62 YD 63
Y+
Sbjct: 63 YE 64
>pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (strain K1)
dbj|BAA80440.1| (AP000061) 197aa long hypothetical protein [Aeropyrum pernix]
Length = 197
Score = 54.0 bits (128), Expect = 1e-06
Identities = 33/92 (35%), Positives = 51/92 (54%), Gaps = 11/92 (11%)
Query: 1 MILTTSRKPSQRTRSFARDLERTLNIPY-VQRGKLSLKE-----IFEIDKHVLLIGEFKA 54
+++TTSR+PS R RSF +DL T+ + RG S++E I ++++GE +
Sbjct: 16 ILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRG 75
Query: 55 NPGTLVVYDVENEKRLSSFIS-----VKLQRE 81
NPG + VY VE +R + +S V L RE
Sbjct: 76 NPGIIRVYAVEGPERPDNIVSFIVKGVSLSRE 107
>pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii
dbj|BAA31023.1| (AP000007) 334aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 224
Score = 47.0 bits (110), Expect = 1e-04
Identities = 34/92 (36%), Positives = 51/92 (54%), Gaps = 10/92 (10%)
Query: 1 MILTTSRKPSQRTRSFARDLERTL-NIPYVQRGKLSLKEIF--EIDK---HVLLIGEFKA 54
M++TTS +P++RTRSF DLER + N Y+ RGK +++E+ D+ +L+I +K
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 55 NPGTLVVYDVENEK----RLSSFISVKLQREI 82
NP + V E VKLQRE+
Sbjct: 62 NPLKMTFIKVHPEDWGYLGYLYLHGVKLQREM 93
>pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (strain Orsay)
emb|CAB49198.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 224
Score = 45.4 bits (106), Expect = 4e-04
Identities = 33/92 (35%), Positives = 50/92 (53%), Gaps = 10/92 (10%)
Query: 1 MILTTSRKPSQRTRSFARDLERTL-NIPYVQRGKLSLKEIF--EIDK---HVLLIGEFKA 54
M++TTS +P++RTRSF DLER N Y+ RGK +++E+ D+ +L+I +K
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 55 NPGTLVVYDVENEK----RLSSFISVKLQREI 82
NP + V + VKLQRE+
Sbjct: 62 NPLKMTFIKVHPDDWGYLGYLYLHGVKLQREM 93
>emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
emb|CAC23146.1| (AL512964) hypothetical [Sulfolobus solfataricus]
Length = 170
Score = 34.9 bits (79), Expect = 0.61
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 1 MILTTSRKPSQRTRSFARDLERTL-NIPYVQRGKLSLKEIFEI-----DKHVLLIGEFKA 54
+++T+SR PS RTR+F L L + + RGK S EIFE ++L +
Sbjct: 8 IVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKIEIFERAINLGALYLLFVLAKNG 67
Query: 55 NPGTLVVYDVEN 66
NP ++VYD+E+
Sbjct: 68 NPLRIIVYDLES 79
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
domain: PF01945 (Domain of unknown function),
Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
comes from this gene [Caenorhabditis elegans]
Length = 292
Score = 33.0 bits (74), Expect = 2.3
Identities = 18/67 (26%), Positives = 37/67 (54%), Gaps = 6/67 (8%)
Query: 1 MILTTSRKPSQRTRSFARDLERTL-NIPYVQRGKLSLKEIFEIDK-----HVLLIGEFKA 54
+++TTSR PS R + FA++++ N + RG +K++ + K +++ E +
Sbjct: 80 IVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRG 139
Query: 55 NPGTLVV 61
NP ++V
Sbjct: 140 NPDGMLV 146
>ref|NP_014227.1| subunit of ubiquitin- protein ligase; Apc1p [Saccharomyces
cerevisiae]
sp|P53886|YNR2_YEAST HYPOTHETICAL 196.1 KD PROTEIN IN RPS3-PSD1 INTERGENIC REGION
pir||S63127 probable membrane protein YNL172w - yeast (Saccharomyces
cerevisiae)
emb|CAA96060.1| (Z71448) ORF YNL172w [Saccharomyces cerevisiae]
Length = 1748
Score = 32.2 bits (72), Expect = 4.3
Identities = 15/27 (55%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Query: 105 EEFQKYYEIYDEFLFQHLNINEDSDIT 131
+E+Q+Y EIY+ LFQHL +DS+IT
Sbjct: 596 QEYQEYKEIYERDLFQHL--KQDSEIT 620
CPU time: 24.16 user secs. 0.51 sys. secs 24.67 total secs.
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.322 0.143 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60539884
Number of Sequences: 618844
Number of extensions: 2467118
Number of successful extensions: 6119
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6108
Number of HSP's gapped (non-prelim): 23
length of query: 169
length of database: 195,544,254
effective HSP length: 54
effective length of query: 115
effective length of database: 162,126,678
effective search space: 18644567970
effective search space used: 18644567970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 68 (30.9 bits)