PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation


CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-KNOWN Status-LIKELY Status-NEW Mammalia Nematoda
EXCLUDE clusters with the following features for at least one member:
Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
FT-substrate(s) Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
GGT1-substrate(s) GGT2-substrate(s) Synthetic-constructs
Ranked by phylogenetic complexity of full cluster

Querycode: cs2220ce111ct11112111121111cm1se200st00202222222221r4 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
+ 1 46229098 Rab - small GTPases 1314 2725 62.500 633.613 18
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6.000 0.119 18 0 0 0 0 18 11 1 0 1 1 2 0 2 0
+ 2 3074 Ras/Ral/Rap - small GTPases 374 957 59.250 146.161 100
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29.250 10.449 100 0 0 7 0 93 24 3 7 9 11 8 25 0 6
+ 3 23509581 DnaJ-like heat shock chaperones 115 3302 45.833 4.005 111
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45.000 3.731 111 0 0 1 0 110 26 4 6 3 5 4 24 29 9
+ 4 50417428 Kinases - Serine/threonine-protein kinase 11 LKB1; calcium/calmodulin-dependent protein kinase IG; rhodopsin kinase; G protein-coupled receptor kinases 55 12044 12.833 0.251 22
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8.167 0.040 22 0 0 0 0 22 12 1 1 3 3 1 0 0 1
+ 5 16660147 Lamin - nuclear intermediate filament; CENP-F >>linked over coiled coil<< 95 9803 10.000 0.921 30
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3.333 0.092 30 0 0 0 0 30 23 3 0 2 0 1 0 0 1
+ 6 14589854 PRL-1 to 3 tyrosine phosphatase 45 286 8.500 7.080 32
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7.500 3.580 32 0 0 0 0 32 12 2 5 5 6 2 0 0 0
+ 7 47835006 phosphorylase B kinase alpha/beta 37 92 8.000 14.880 37
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8.000 14.880 37 0 0 0 0 37 18 1 0 2 13 2 0 0 1
+ 8 12655647 LIM domains - Prickle-like; LMO6 51 909 7.500 2.861 50
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7.000 2.750 50 0 0 0 0 50 24 1 3 7 11 4 0 0 0
+ 9 55652440 protein phosphatase 1 regulatory subunit 16B TIMAP, MYPT3 myosin phosphatase targeting subunit 3, Ankyrin repeat proteins 31 4193 6.667 0.229 19
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4.167 0.086 19 0 0 2 0 17 10 3 0 0 1 3 0 0 0
+ 10 51716991 putative prenylated protein of fungal and metazoan origin, 0610010K06Rik protein 12 108 3.000 1.333 12
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3.000 1.333 12 0 0 0 0 12 8 1 0 2 0 1 0 0 0
? 11 50759663 WD40 beta propellers and TPR repeats 9 641 2.917 0.126 8
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2.500 0.100 8 0 0 0 0 8 4 1 0 1 0 1 1 0 0
? 12 50927341 KRAB krueppel-associated box and zinc finger proteins 7 8255 0.667 0.006 7
Explore
0.667 0.006 7 0 0 0 0 7 6 0 0 0 0 1 0 0 0

Your query selected 446 sequences in 12 clusters.