PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation


CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-KNOWN Status-LIKELY Status-NEW Mammalia Plants
EXCLUDE clusters with the following features for at least one member:
Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
FT-substrate(s) Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
GGT1-substrate(s) GGT2-substrate(s) Synthetic-constructs
Ranked by phylogenetic complexity of full cluster

Querycode: cs2220ce111ct11112111111211cm1se200st00202222222221r4 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
+ 1 46229098 Rab - small GTPases 1314 2725 62.500 633.613 18
Explore
6.000 0.119 18 0 0 0 0 18 11 1 0 1 1 2 0 2 0
+ 2 54639180 Rho/Rac - small GTPases 425 814 49.000 221.898 56
Explore
15.167 3.853 56 0 0 0 0 56 15 3 1 6 0 0 16 5 10
+ 3 23509581 DnaJ-like heat shock chaperones 115 3302 45.833 4.005 111
Explore
45.000 3.731 111 0 0 1 0 110 26 4 6 3 5 4 24 29 9
? 4 27370917 cyclophilin, peptidyl-prolyl cis-trans isomerase-like 16 1229 6.500 0.208 12
Explore
5.500 0.117 12 0 0 0 0 12 2 0 2 0 3 0 1 1 3
* 5 46098133 Kinases - IRAK-4 mutant form 1 5 5281 1.000 0.005 4
Explore
0.750 0.003 4 0 0 0 0 4 2 0 0 0 0 0 0 1 1
? 6 6969639 Calmodulin-related 6 2745 0.833 0.013 2
Explore
0.333 0.001 2 0 0 0 0 2 1 0 0 0 0 0 0 1 0
* 7 50929371 CCH - Copper chaperone 12 23 0.833 6.261 11
Explore
0.833 5.261 11 0 0 0 0 11 1 0 0 0 0 0 0 10 0
? 8 50878309 cytochrome P450, coumarin 7-hydroxylase 4 4539 0.667 0.004 4
Explore
0.667 0.004 4 0 0 0 0 4 2 0 0 0 0 0 0 2 0
# 9 34880660 similar to protein PC326 2 2063 0.333 0.002 2
Explore
0.333 0.002 2 0 0 0 0 2 1 0 0 0 0 0 0 1 0

Your query selected 220 sequences in 9 clusters.