PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation


CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-KNOWN
EXCLUDE clusters with the following features for at least one member:
Status-LIKELY Status-NEW Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
Synthetic-constructs
Ranked by evOluation of full cluster

Querycode: cs2000ce111ct11111111111111cm1se111st00202222222221r2 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
+ 1 46229098 Rab - small GTPases 1314 2725 104.167 633.613 1304
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103.333 624.006 167 45 1279 1 0 1303 344 44 66 100 109 57 160 261 162
+ 2 54639180 Rho/Rac - small GTPases 425 814 63.000 221.898 425
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63.000 221.898 414 369 0 0 0 425 89 15 20 40 21 20 125 51 44
+ 3 3074 Ras/Ral/Rap - small GTPases 374 957 59.250 146.161 372
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59.250 144.602 368 271 1 10 0 362 97 12 26 41 35 20 90 0 41
+ 4 13384618 G gamma 2/4/10... 49 83 10.500 28.928 49
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10.500 28.928 49 49 0 0 0 49 22 2 6 11 5 2 0 0 1
+ 5 38636652 Hepatitis Delta antigen 97 333 0.250 28.255 97
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0.250 28.255 97 0 0 97 0 0 0 0 0 0 0 0 0 0 0
+ 6 47835006 phosphorylase B kinase alpha/beta 37 92 8.000 14.880 37
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8.000 14.880 37 0 0 0 0 37 18 1 0 2 13 2 0 0 1
+ 7 10176908 CCH - Copper chaperone 11 12 0.417 10.083 11
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0.417 10.083 11 8 0 0 0 11 0 0 0 0 0 0 0 11 0
+ 8 34784026 Pex19/PxF 18 33 5.417 9.818 18
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5.417 9.818 18 14 0 0 0 18 10 0 1 1 1 0 5 0 0
+ 9 7512963 Paralemmin 19 38 2.333 9.500 19
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2.333 9.500 19 19 0 0 0 19 13 4 1 1 0 0 0 0 0
+ 10 50728808 Dexamethasone-induced Ras - RASD1, RASD2 20 43 2.667 9.302 20
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2.667 9.302 20 0 0 0 0 20 14 2 2 2 0 0 0 0 0
+ 11 38109387 nucleosome assembly protein NAP-1-like 28 88 8.333 8.909 28
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8.333 8.909 28 0 0 0 0 28 8 1 3 2 0 0 14 0 0
+ 12 41152369 G gamma 1/11... 15 28 1.750 8.036 15
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1.750 8.036 15 0 0 0 0 15 10 0 1 4 0 0 0 0 0
+ 13 19067861 Rab3A-C small GTPase 22 63 1.167 7.683 21
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1.000 7.000 0 0 21 0 0 21 20 1 0 0 0 0 0 0 0
+ 14 14589854 PRL-1 to 3 tyrosine phosphatase 45 286 9.917 7.080 45
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9.917 7.080 45 13 0 0 0 45 20 3 6 7 6 2 0 0 1
+ 15 50308447 G gamma of pheromone receptor 6 6 0.417 6.000 6
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0.417 6.000 6 5 0 0 0 6 0 0 0 0 0 0 6 0 0
+ 16 50420547 Synaptobrevin-like snare protein Ykt6 32 182 13.000 5.626 32
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13.000 5.626 32 30 0 0 0 32 6 0 3 1 0 0 14 5 3
+ 17 30984062 putative syntaxin-binding complexin III/IV 13 33 1.250 5.121 13
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1.250 5.121 13 13 0 0 0 13 8 0 1 4 0 0 0 0 0
+ 18 23509581 DnaJ-like heat shock chaperones 115 3302 45.833 4.005 114
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45.000 3.936 113 3 0 1 0 113 29 4 6 3 5 4 24 29 9
+ 19 15030162 interferon-inducible guanylate-binding protein - GBP 26 175 2.667 3.863 26
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2.667 3.863 21 18 0 0 0 26 21 1 3 1 0 0 0 0 0
+ 20 227255 Rod cGMP-specific cyclic phosphodiesterase alpha & beta 45 572 5.417 3.540 45
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5.417 3.540 45 24 0 0 0 45 34 1 3 3 4 0 0 0 0
+ 21 30794282 CNP cyclic nucleotide phosphodiesterase 17 82 2.500 3.524 17
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2.500 3.524 17 16 0 0 0 17 12 0 2 3 0 0 0 0 0
+ 22 6324184 pheromone/mating factor 3 3 0.167 3.000 3
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0.167 3.000 3 0 0 0 0 3 0 0 0 0 0 0 3 0 0
+ 23 12655647 LIM domains - Prickle-like; LMO6 51 909 8.750 2.861 51
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8.750 2.861 51 1 0 0 0 51 24 1 3 7 11 4 0 0 1
+ 24 1835940 pheromone/mating factor 2 2 0.167 2.000 2
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0.167 2.000 2 0 0 0 0 2 0 0 0 0 0 0 2 0 0
+ 25 38565962 INPP5A protein, inositol-1,4,5-trisphosphate 5-phosphatase, inositol-polyphosphate 5-phosphatase EC 3.1.3. 7 31 1.250 1.581 7
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1.250 1.581 7 0 0 0 0 7 5 1 1 0 0 0 0 0 0
+ 26 7488685 CCH - Copper chaperone 2 3 0.000 1.333 2
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0.000 1.333 2 2 0 0 0 2 0 0 0 0 0 0 0 2 0
+ 27 51716991 putative prenylated protein of fungal and metazoan origin, 0610010K06Rik protein 12 108 3.000 1.333 12
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3.000 1.333 12 0 0 0 0 12 8 1 0 2 0 1 0 0 0
+ 28 7488686 CCH - Copper chaperone 1 1 0.000 1.000 1
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0.000 1.000 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0
+ 29 1813600 pheromone precursor Bbp11 1 1 0.083 1.000 1
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0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
+ 30 16660147 Lamin - nuclear intermediate filament; CENP-F >>linked over coiled coil<< 95 9803 16.000 0.921 95
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16.000 0.921 95 65 0 0 0 95 48 5 12 11 6 3 1 0 9
+ 31 12803177 CLN3 Batten disease protein - Battenin 6 45 0.167 0.800 6
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0.167 0.800 6 0 0 0 0 6 6 0 0 0 0 0 0 0 0
+ 32 28827280 Floral homeotic MADS box protein APETALA1 17 408 0.750 0.708 17
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0.750 0.708 17 0 0 0 0 17 0 0 0 0 0 0 0 17 0
+ 33 50757187 phosphatidylinositol 4,5 bisphosphate 5-phosphatase 15 384 1.500 0.586 15
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1.500 0.586 15 6 0 0 0 15 12 1 0 0 2 0 0 0 0
+ 34 2653356 US2 tegument protein 3 22 0.250 0.409 3
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0.250 0.409 3 3 0 3 0 0 0 0 0 0 0 0 0 0 0
+ 35 1172501 prostacyclin receptor 8 168 0.417 0.381 8
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0.417 0.381 8 0 0 0 0 8 8 0 0 0 0 0 0 0 0
+ 36 50417428 Kinases - Serine/threonine-protein kinase 11 LKB1; calcium/calmodulin-dependent protein kinase IG; rhodopsin kinase; G protein-coupled receptor kinases 55 12044 14.667 0.251 55
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14.667 0.251 53 33 0 0 0 55 27 3 1 10 6 6 1 0 1
+ 37 55652440 protein phosphatase 1 regulatory subunit 16B TIMAP, MYPT3 myosin phosphatase targeting subunit 3, Ankyrin repeat proteins 31 4193 9.333 0.229 30
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8.750 0.215 30 11 0 2 0 28 16 3 0 1 4 3 0 0 1
+ 38 55662717 retinitis pigmentosa GTPase regulator 11 572 0.417 0.212 11
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0.417 0.212 11 11 0 0 0 11 11 0 0 0 0 0 0 0 0
+ 39 38606970 phospholipase A2 5 122 0.083 0.205 5
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0.083 0.205 5 0 0 0 0 5 5 0 0 0 0 0 0 0 0
+ 40 6320138 Pex19 yeast 1 11 0.083 0.091 1
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0.083 0.091 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
+ 41 382658 centromeric CENP-E/kinesin 10 4864 2.667 0.021 10
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2.667 0.021 10 2 0 0 0 10 4 0 1 0 2 0 0 0 3

Your query selected 3049 sequences in 41 clusters.