PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation

CLUSTER parameter selection REQUIRE one of the features for at least one member of listed clusters: Status-NEW Mammalia Nematoda EXCLUDE clusters with the following features for at least one member: Status-KNOWN Status-LIKELY Status-OUT-OF-CONTEXT Other features for cluster members are ALLOWED. Minimum cluster-size: 1

SEQUENCE parameter selection INCLUDE entries with the following features: Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota EXCLUDE entries with the following features: Synthetic-constructs

Ranked by evOluation of full cluster

Querycode: cs0020ce111ct11112111121111cm1se111st00202222222221r2 (save for easy recovery of the identical query parameters)

Clusters								Selected Sequences
General Information				Stats				Stats			Enzyme			Taxonomic Kingdom			Taxonomic Detail Eukaryota
Status	Rank	ClustID	Name	Pren	Total	PC	EvO	Number	PC	EvO	FT	GGT1	GGT2	Viruses	Synthetic	Eukaryota	Mammalia	Birds	Amphibia	Fishes	Insecta	Nematoda	Fungi	Plants	Other
?	1	35193062	DUF544 - NF-E2 inducible	34	65	11.667	17.785	34 Explore	11.667	17.785	34	29	0	0	0	34	19	1	1	0	0	2	8	2	1
?	2	22137475	Ubiquitin-like UBL3	17	23	7.000	12.565	17 Explore	7.000	12.565	17	14	0	0	0	17	5	2	2	2	3	2	1	0	0
?	3	20521916	DUF1339 - possibly integral membrane protein	16	104	4.167	2.462	16 Explore	4.167	2.462	16	5	0	0	0	16	6	1	0	1	3	5	0	0	0
?	4	47218849	F-box and leucine-rich repeat 2	32	693	11.083	1.478	31 Explore	10.500	1.387	31	30	0	0	0	31	17	1	1	3	1	2	6	0	0
?	5	49343985	guanylate cyclases - GCB2	32	887	2.000	1.154	32 Explore	2.000	1.154	30	15	0	0	0	32	10	0	0	0	2	20	0	0	0
?	6	50759663	WD40 beta propellers and TPR repeats	9	641	2.917	0.126	9 Explore	2.917	0.126	9	1	0	0	0	9	4	1	0	1	0	1	2	0	0
?	7	50927341	KRAB krueppel-associated box and zinc finger proteins	7	8255	0.667	0.006	7 Explore	0.667	0.006	7	0	0	0	0	7	6	0	0	0	0	1	0	0	0

Your query selected 146 sequences in 7 clusters.