HumanPRENbase
Database of Prenylated Human
Proteins and their Orthologues

Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation


CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-KNOWN Status-LIKELY Status-NEW Mammalia Fungi
EXCLUDE clusters with the following features for at least one member:
Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
FT-substrate(s) Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
GGT1-substrate(s) GGT2-substrate(s) Synthetic-constructs
Ranked by evOluation of cluster after selection

Querycode: Hcs2220ce111ct11112111112111cm1se200st00202222222221r3 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
+ 1 21327708
(no isoinpas)
nucleosome assembly protein 1-like 1 25 41 11.500 15.244 25
Explore
11.500 15.244 25 0 0 0 0 25 3 1 2 1 0 0 11 7 0
+ 2 4885425
(2 isoinpas)
H-Ras, v-Ha-ras Harvey rat sarcoma viral oncogene homolog 21 24 8.750 18.375 15
Explore
5.833 9.375 15 0 0 5 0 10 5 1 1 1 0 0 1 0 1
? 3 41018470
(3 isoinpas)
WD and tetratricopeptide repeats protein 1 7 15 3.000 3.267 7
Explore
3.000 3.267 7 0 0 0 0 7 2 1 0 1 0 1 1 1 0

Your query selected 47 sequences in 3 clusters.