HumanPRENbase
Database of Prenylated Human
Proteins and their Orthologues

Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation


CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-NEW Mammalia Insecta
EXCLUDE clusters with the following features for at least one member:
Status-KNOWN Status-LIKELY Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
Synthetic-constructs
Ranked by evOluation of full cluster

Querycode: Hcs0020ce111ct11112111211111cm1se111st00202222222221r2 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
? 1 55777304
(3 isoinpas)
Ubiquitin-like 3 12 14 8.000 10.286 12
Explore
8.000 10.286 12 10 0 0 0 12 3 1 1 1 2 2 1 1 0
? 2 42822891
(no isoinpas)
Selenoprotein W-related 9 9 3.000 9.000 9
Explore
3.000 9.000 9 8 0 0 0 9 3 1 0 2 3 0 0 0 0
? 3 21956647
(4 isoinpas)
ubiquitin specific protease 32 9 11 2.667 7.364 9
Explore
2.667 7.364 9 1 0 0 0 9 4 1 0 1 3 0 0 0 0
? 4 12314158
(3 isoinpas)
DUF1339, possibly integral membrane protein 11 21 4.583 5.762 11
Explore
4.583 5.762 11 2 0 0 0 11 4 1 0 1 3 2 0 0 0
? 5 45501001
(4 isoinpas)
EHBP1 - EH domain binding protein 1 7 11 1.167 4.455 7
Explore
1.167 4.455 7 0 0 0 0 7 4 0 0 0 3 0 0 0 0
? 6 34098968
(3 isoinpas)
lysozyme-like 2 6 11 0.833 3.273 5
Explore
0.833 2.273 4 1 0 0 0 5 4 0 0 0 1 0 0 0 0
? 7 27734755
(no isoinpas)
F-box and leucine-rich repeat protein 20 6 26 2.083 1.385 6
Explore
2.083 1.385 6 6 0 0 0 6 2 0 1 1 1 1 0 0 0

Your query selected 59 sequences in 7 clusters.