HumanPRENbase
Database of Prenylated Human
Proteins and their Orthologues

Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation


CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-NEW Mammalia Fungi
EXCLUDE clusters with the following features for at least one member:
Status-KNOWN Status-LIKELY Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
Synthetic-constructs
Ranked by evOluation of full cluster

Querycode: Hcs0020ce111ct11112111112111cm1se111st00202222222221r2 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
? 1 6330169
(no isoinpas)
DUF544, KIAA1164 protein 17 20 7.083 14.450 17
Explore
7.083 14.450 17 13 0 0 0 17 3 1 0 0 0 1 11 0 1
? 2 55777304
(3 isoinpas)
Ubiquitin-like 3 12 14 8.000 10.286 12
Explore
8.000 10.286 12 10 0 0 0 12 3 1 1 1 2 2 1 1 0
? 3 7243161
(3 isoinpas)
DUF544 10 11 4.167 9.091 10
Explore
4.167 9.091 10 9 0 0 0 10 5 0 1 0 0 1 1 2 0
? 4 6164721
(7 isoinpas)
F-box protein Fbl2 12 31 5.000 4.645 12
Explore
5.000 4.645 12 12 0 0 0 12 5 1 0 2 0 1 3 0 0
? 5 41018470
(3 isoinpas)
WD and tetratricopeptide repeats protein 1 7 15 3.000 3.267 7
Explore
3.000 3.267 7 0 0 0 0 7 2 1 0 1 0 1 1 1 0
? 6 458692
(3 isoinpas)
WD repeat domain 42A 7 16 2.000 3.062 7
Explore
2.000 3.062 7 1 0 0 0 7 4 0 1 0 0 0 1 1 0

Your query selected 65 sequences in 6 clusters.