PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation


CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-LIKELY
EXCLUDE clusters with the following features for at least one member:
Status-KNOWN Status-NEW Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
Synthetic-constructs
Ranked by evOluation of full cluster

Querycode: cs0200ce111ct11111111111111cm1se111st00202222222221r2 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
* 1 42570277 CCH - copper chaperone related 33 85 0.500 12.812 33
Explore
0.500 12.812 33 31 0 0 0 33 0 0 0 0 0 0 0 33 0
* 2 6728965 CCH - Copper chaperones 14 19 0.250 10.316 14
Explore
0.250 10.316 14 12 0 0 0 14 0 0 0 0 0 0 0 14 0
* 3 37589870 G gamma 13 13 17 5.417 9.941 13
Explore
5.417 9.941 13 13 0 0 0 13 4 1 2 2 4 0 0 0 0
* 4 8978333 CCH - Copper chaperone 13 20 0.167 8.450 13
Explore
0.167 8.450 13 11 0 0 0 13 0 0 0 0 0 0 0 13 0
* 5 50916517 CCH - Copper chaperone 8 9 0.083 7.111 8
Explore
0.083 7.111 8 8 0 0 0 8 0 0 0 0 0 0 0 8 0
* 6 50929371 CCH - Copper chaperone 12 23 0.833 6.261 12
Explore
0.833 6.261 12 1 0 0 0 12 1 0 0 0 0 0 0 11 0
* 7 218049 pheromone/mating factor - rhodotorucine A precursor 6 6 0.083 6.000 6
Explore
0.083 6.000 6 0 0 0 0 6 0 0 0 0 0 0 6 0 0
* 8 6014618 pheromone/mating factor 4 4 0.167 4.000 4
Explore
0.167 4.000 4 0 0 0 0 4 0 0 0 0 0 0 4 0 0
* 9 15219992 CCH - Copper chaperone 4 4 0.167 4.000 4
Explore
0.167 4.000 4 4 0 0 0 4 0 0 0 0 0 0 0 4 0
* 10 50920309 CCH - Copper chaperone 4 5 0.167 3.200 4
Explore
0.167 3.200 4 0 0 0 0 4 0 0 0 0 0 0 0 4 0
* 11 49899868 Ras-like 4 5 1.000 3.200 4
Explore
1.000 3.200 4 4 0 0 0 4 2 0 1 1 0 0 0 0 0
* 12 37626056 pheromone/mating factor 4 5 0.083 3.200 4
Explore
0.083 3.200 4 0 0 0 0 4 0 0 0 0 0 0 4 0 0
* 13 24417368 CCH - Copper chaperone 4 5 0.083 3.200 4
Explore
0.083 3.200 4 3 0 0 0 4 0 0 0 0 0 0 0 4 0
* 14 3242079 CCH - Copper chaperone 5 8 0.167 3.125 5
Explore
0.167 3.125 5 5 0 0 0 5 0 0 0 0 0 0 0 5 0
* 15 26452351 CCH - Copper chaperone 3 3 0.167 3.000 3
Explore
0.167 3.000 3 1 0 0 0 3 0 0 0 0 0 0 0 3 0
* 16 19112070 pheromone/mating factor 3 3 0.083 3.000 3
Explore
0.083 3.000 3 0 0 0 0 3 0 0 0 0 0 0 3 0 0
* 17 3451035 pheromone/mating factor 3 3 0.167 3.000 3
Explore
0.167 3.000 3 0 0 0 0 3 0 0 0 0 0 0 3 0 0
* 18 41209146 pheromone/mating factor 3 3 0.083 3.000 3
Explore
0.083 3.000 3 0 0 0 0 3 0 0 0 0 0 0 3 0 0
* 19 50924001 CCH - Copper chaperone OSJNBb0014D23 4 6 0.083 2.667 4
Explore
0.083 2.667 4 4 0 0 0 4 0 0 0 0 0 0 0 4 0
* 20 6862917 CCH - Copper chaperone 6 15 0.083 2.400 6
Explore
0.083 2.400 6 6 0 0 0 6 0 0 0 0 0 0 0 6 0
* 21 37626081 pheromone/mating factor 3 4 0.083 2.250 3
Explore
0.083 2.250 3 0 0 0 0 3 0 0 0 0 0 0 3 0 0
* 22 30679432 CCH - Copper chaperone 3 4 0.083 2.250 3
Explore
0.083 2.250 3 3 0 0 0 3 0 0 0 0 0 0 0 3 0
* 23 3451043 pheromone/mating factor 2 2 0.167 2.000 2
Explore
0.167 2.000 2 0 0 0 0 2 0 0 0 0 0 0 2 0 0
* 24 37626083 pheromone/mating factor 2 2 0.083 2.000 2
Explore
0.083 2.000 2 0 0 0 0 2 0 0 0 0 0 0 2 0 0
* 25 37105892 visual GTP-binding protein gamma subunit 2 2 0.167 2.000 2
Explore
0.167 2.000 2 0 0 0 0 2 0 0 0 0 0 0 0 0 2
* 26 2865510 pheromone/mating factor 2 2 0.167 2.000 2
Explore
0.167 2.000 2 0 0 0 0 2 0 0 0 0 0 0 2 0 0
* 27 3451045 pheromone/mating factor 2 2 0.167 2.000 2
Explore
0.167 2.000 2 0 0 0 0 2 0 0 0 0 0 0 2 0 0
* 28 4680375 pheromone/mating factor 2 2 0.167 2.000 2
Explore
0.167 2.000 2 0 0 0 0 2 0 0 0 0 0 0 2 0 0
* 29 51783965 Paralemmin 2 6 20 0.250 1.800 6
Explore
0.250 1.800 6 6 0 0 0 6 6 0 0 0 0 0 0 0 0
* 30 6017103 Pex19 plant 3 5 0.083 1.800 3
Explore
0.083 1.800 3 3 0 0 0 3 0 0 0 0 0 0 0 3 0
* 31 7573325 G gamma 3 5 0.083 1.800 3
Explore
0.083 1.800 3 3 0 0 0 3 0 0 0 0 0 0 0 3 0
* 32 18091801 pheromone/mating factor - MFalpha 5 14 0.250 1.786 5
Explore
0.250 1.786 5 0 0 0 0 5 0 0 0 0 0 0 5 0 0
* 33 25404103 CCH - Copper chaperone 6 21 0.333 1.714 6
Explore
0.333 1.714 6 6 0 0 0 6 0 0 0 0 0 0 0 6 0
* 34 45433315 plant nucleosome assembly protein NAP-1-like 17 185 0.583 1.562 17
Explore
0.583 1.562 17 0 0 0 0 17 0 0 0 0 0 0 0 17 0
* 35 34879240 Ras-like 2 3 0.167 1.333 2
Explore
0.167 1.333 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0
* 36 42554990 G gamma of pheromone receptor 3 7 0.250 1.286 3
Explore
0.250 1.286 3 2 0 0 0 3 0 0 0 0 0 0 3 0 0
* 37 37626075 pheromone precursor Phb3.3 B43 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0
* 38 39585080 Hypothetical protein CBG06892 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0
* 39 3023398 Mating-type pheromone BAP11 precursor 1 1 0.000 1.000 1
Explore
0.000 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 40 19113473 G gamma 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 41 14269442 peptide mating pheromone precursor Bbp2-2 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 42 34902772 CCH - Copper chaperone 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0
* 43 17553610 Pex19/PxF 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0
* 44 25408515 CCH - Copper chaperone 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0
* 45 21554311 CCH - Copper chaperone 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0
* 46 37626087 pheromone precursor Phb3.3 B47 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0
* 47 41209145 lipopeptide mating pheromone precursor Bap31 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 48 14269438 peptide mating pheromone precursor Bbp2-7 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 49 9755780 putative protein 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0
* 50 37626066 pheromone precursor Phb2.2 B43 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 51 400251 pheromone/mating factor 1 1 0.000 1.000 1
Explore
0.000 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 52 14269434 pheromone/mating factor 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0
* 53 5454030 Rab-like 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0
* 54 27549461 pheromone/mating factor 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 55 4063749 hypothetical protein 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0
* 56 21644573 Rho-like 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0
* 57 41209147 lipopeptide mating pheromone precursor Bap33 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 58 51828604 PREDICTED: similar to RAS-like, family 10, member B; ras-like protein VTS58635 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0
* 59 4973425 pheromone/mating factor 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 60 14269436 pheromone/mating factor 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 61 11994385 unnamed protein product 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0
* 62 5917793 pheromone Mfa2 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 63 1813601 pheromone precursor Bbp12 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 64 44151650 putative PDphb1 mating pheromone precursor 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 65 41209149 lipopeptide mating pheromone precursor Bbp28 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 66 34902774 CCH - Copper chaperone 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0
* 67 28830075 similar to Dictyostelium discoideum Slime mold. G protein gamma-subunit 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1
* 68 14269440 pheromone/mating factor 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 69 22652060 pheromone precursor MFa-1 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0
* 70 15233077 copper-binding family protein 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0
* 71 2290410 mating type 2 pheromone precursor 1 1 0.083 1.000 1
Explore
0.083 1.000 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0
* 72 3451039 pheromone/mating factor 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 73 3451041 pheromone 1 1 0.083 1.000 1
Explore
0.083 1.000 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 74 55595913 EH domain binding - EHBP1, tangerin 22 574 1.333 0.843 22
Explore
1.333 0.843 22 0 0 0 0 22 17 0 0 0 5 0 0 0 0
* 75 25989583 MATa pheromone, MFa3p 3 12 0.250 0.750 3
Explore
0.250 0.750 3 0 0 0 0 3 0 0 0 0 0 0 3 0 0
* 76 50923991 CCH - Copper chaperone OSJNBb0014D23.11 1 2 0.083 0.500 1
Explore
0.083 0.500 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0
* 77 46445135 potential Ras family GTPase 1 2 0.083 0.500 1
Explore
0.083 0.500 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0
* 78 46228905 synaptobrevin/VAMP-like protein 1 2 0.083 0.500 1
Explore
0.083 0.500 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1
* 79 21361653 hypothetical protein FLJ20364 4 37 0.250 0.432 4
Explore
0.250 0.432 4 0 0 0 0 4 4 0 0 0 0 0 0 0 0
* 80 6679529 prostaglandin E receptor subtype EP2 2 10 0.083 0.400 2
Explore
0.083 0.400 2 0 0 0 0 2 2 0 0 0 0 0 0 0 0
* 81 34852316 Rab-like 3 24 0.750 0.375 3
Explore
0.750 0.375 0 0 3 0 0 3 1 1 0 1 0 0 0 0 0
* 82 13161382 small Lamins, coiled coil, 40255119 with RAB domain 25 1865 5.833 0.335 25
Explore
5.833 0.335 22 10 3 0 0 25 6 2 0 6 0 1 0 0 10
* 83 50928717 OSJNBa0008M17.10 1 3 0.083 0.333 1
Explore
0.083 0.333 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0
* 84 55616121 PREDICTED: similar to DnaJ Hsp40 homolog, subfamily B, member 2; heat shock protein, neuronal DNAJ-like 1 1 4 0.083 0.250 1
Explore
0.083 0.250 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0
* 85 51474992 PREDICTED: hypothetical protein XP_292820 2 19 0.167 0.211 2
Explore
0.167 0.211 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0
* 86 41618324 TPA: HDC11342 1 5 0.083 0.200 1
Explore
0.083 0.200 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0
* 87 51859154 TRIP protein, transcription repressor, in FLII: leucine rich repeat interacting protein 1, PRO1252 6 183 0.333 0.197 6
Explore
0.333 0.197 6 0 0 0 0 6 6 0 0 0 0 0 0 0 0
* 88 39597678 EF-hand + Rab 2 22 0.167 0.182 2
Explore
0.167 0.182 0 0 2 0 0 2 0 0 0 0 0 2 0 0 0
* 89 47122956 ras-dva small GTPase 8 355 2.333 0.180 8
Explore
2.333 0.180 8 0 0 0 0 8 0 2 1 2 3 0 0 0 0
* 90 47213429 unnamed protein product 1 9 0.083 0.111 1
Explore
0.083 0.111 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0
* 91 54655751 hypothetical protein Chro.60069 1 10 0.083 0.100 1
Explore
0.083 0.100 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1
* 92 14595125 GFP-Rab-RBD-GFP construct 6 688 0.167 0.052 1
Explore
0.083 0.001 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0
* 93 19173266 Rab-related GTPases 4 352 0.750 0.045 4
Explore
0.750 0.045 1 1 3 0 0 4 0 2 0 0 0 1 1 0 0
* 94 64735 xlgv7 gene product 1 27 0.083 0.037 1
Explore
0.083 0.037 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0
* 95 28828907 Rab-like 1 33 0.083 0.030 1
Explore
0.083 0.030 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1
* 96 48101558 similar to Pter-prov protein 1 36 0.083 0.028 1
Explore
0.083 0.028 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0
* 97 55664334 PREDICTED: similar to Rap2c protein 1 50 0.083 0.020 1
Explore
0.083 0.020 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0
* 98 51764239 PREDICTED: RIKEN cDNA 4432412L15 1 56 0.083 0.018 1
Explore
0.083 0.018 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0
* 99 26325132 unnamed protein product 1 74 0.083 0.014 1
Explore
0.083 0.014 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0
* 100 55638107 PREDICTED: similar to Rho-related GTP-binding protein Rho6 Rnd1 2 335 0.167 0.012 2
Explore
0.167 0.012 2 1 0 0 0 2 2 0 0 0 0 0 0 0 0
* 101 50405040 unknown 4 1902 0.333 0.008 3
Explore
0.250 0.005 1 3 0 0 0 3 0 0 0 0 0 0 0 0 3
* 102 50745557 PREDICTED: similar to cone arrestin 1 138 0.083 0.007 1
Explore
0.083 0.007 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0
* 103 46098133 Kinases - IRAK-4 mutant form 1 5 5281 1.333 0.005 5
Explore
1.333 0.005 5 1 0 0 0 5 2 0 0 0 0 0 1 1 1
* 104 50759027 similar to Laminin 2 1038 0.333 0.004 2
Explore
0.333 0.004 1 2 0 0 0 2 0 1 0 0 1 0 0 0 0
* 105 24620455 unrelated IGcam and LCR proteins 4 4314 0.500 0.004 4
Explore
0.500 0.004 4 1 0 0 0 4 0 0 0 0 0 3 1 0 0
* 106 1262300 casein kinase II alpha 1 479 0.000 0.002 1
Explore
0.000 0.002 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0

Your query selected 364 sequences in 106 clusters.