TBLASTN 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 993906630-26998-12118
Query= (434 letters)
Database: High-Throughput Genome Sequences 86,009 sequences; 4,355,661,355 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|13027303|dbj|AP003273.1|AP003273 Oryza sativa chromosome... 671 0.0 gi|6664465|gb|AC020432.1|AC020432 Drosophila melanogaster, ... 428 e-118 gi|8101304|gb|AC010037.5|AC010037 Drosophila melanogaster c... 428 e-118 gi|6996821|gb|AC023733.2|AC023733 Drosophila melanogaster c... 350 e-109 gi|11877285|emb|AL499622.1|LMFLCHR32 Leishmania major chrom... 173 5e-68 gi|14161242|emb|AL499621.2|LMFLCHR31 Leishmania major chrom... 239 3e-61 gi|7523611|gb|AC036099.1|AC036099 Giardia intestinalis clon... 97 4e-26 gi|12668551|gb|AC088637.1|AC088637 Giardia intestinalis clo... 120 3e-25 gi|11464913|gb|AC086986.1|AC086986 Giardia intestinalis clo... 93 1e-22 gi|14330108|emb|AL590365.6|AL590365 Homo sapiens chromosome... 96 2e-20 gi|13396388|emb|AL157391.8|AL157391 Homo sapiens chromosome... 96 2e-20 gi|7534532|gb|AC041267.1|AC041267 Giardia intestinalis clon... 96 8e-18 gi|9589982|gb|AC075683.1|AC075683 Giardia intestinalis clon... 76 7e-12 gi|7575856|gb|AC052536.1|AC052536 Giardia intestinalis clon... 43 0.049 gi|8468967|gb|AC068279.3|AC068279 Homo sapiens chromosome 2... 37 3.5
>gi|13027303|dbj|AP003273.1|AP003273 Oryza sativa chromosome 1 clone P0510F09, *** SEQUENCING IN PROGRESS ***, in ordered pieces Length = 141564 Score = 671 bits (1731), Expect = 0.0 Identities = 317/413 (76%), Positives = 367/413 (88%), Gaps = 5/413 (1%) Frame = -1 Query: 27 DDTSLETIVRRFQDSMS-----EAKTHKFWETQPVGQFKDIGDTSLPEGPIEPATPLSEV 81 +DTS+E + RR Q+ M+ A+ HKFWETQPVGQF+D D+SLP+G IEP TPLSEV Sbjct: 37668 EDTSIEALARRVQEHMTLASNPTARRHKFWETQPVGQFRDAADSSLPDGAIEPPTPLSEV 37489 Query: 82 KQEPYNLPSVYEWTTCDMNSDDMCSEVYNLLKNNYVEDDENMFRFNYSKEFLRWALRPPG 141 + +PY LP+ +EW TCD++ D + +++Y LL +NYVEDDENMFRFNYS FLRWALRPP Sbjct: 37488 RADPYPLPAAFEWYTCDLDDDALLTDLYALLAHNYVEDDENMFRFNYSPAFLRWALRPPS 37309 Query: 142 YYQSWHIGVRAKTSKKLVAFISGVPARIRVRDEVVKMAEINFLCVHKKLRSKRLAPVMIK 201 ++++WHIGVRA+ SKKLVAFISGVPARIR RD+VV+MAEINFLCVHKKLRSKRLAPV+I+ Sbjct: 37308 FFRAWHIGVRARESKKLVAFISGVPARIRARDDVVRMAEINFLCVHKKLRSKRLAPVLIR 37129 Query: 202 EVTRRVHLENIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIK 261 EVTRRVH ENIWQAAYTAGV+LPTPITTC+YWHRSLNPKKLIDVGFSRLG RMTMSRT++ Sbjct: 37128 EVTRRVHQENIWQAAYTAGVVLPTPITTCRYWHRSLNPKKLIDVGFSRLGPRMTMSRTVR 36949 Query: 262 LYKLPDAPITPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPREDVVDSY 321 LYKLP+AP+TPGFR+ME RDV AVTRLLR YL++F VA DFDE DVEHWLLPREDVVDSY Sbjct: 36948 LYKLPEAPLTPGFRQMELRDVAAVTRLLRAYLAKFVVAPDFDEMDVEHWLLPREDVVDSY 36769 Query: 322 LVESPETHDVTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMNDALIVSKQ 381 LVESPETH+VTDFCSFYTLPS++L N NY TLKAAYSYYNV+T+T QLMNDALIV+KQ Sbjct: 36768 LVESPETHEVTDFCSFYTLPSSVLNNANYATLKAAYSYYNVSTKTPLQQLMNDALIVAKQ 36589 Query: 382 KGFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYRLKSALKPAELGLVLL 434 K +DVFNALDVM NESFLKELKFGPGDGQLHYYLYNYR+++ +KP+ELGLVLL Sbjct: 36588 KNYDVFNALDVMENESFLKELKFGPGDGQLHYYLYNYRIRNGIKPSELGLVLL 36430
>gi|6664465|gb|AC020432.1|AC020432 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces Length = 83545 Score = 428 bits (1100), Expect = e-118 Identities = 201/407 (49%), Positives = 291/407 (71%), Gaps = 4/407 (0%) Frame = +3 Query: 32 ETIVRRFQDSMSE----AKTHKFWETQPVGQFKDIGDTSLPEGPIEPATPLSEVKQEPYN 87 + +++ D+M+ AK FW TQPV + + T+ IEP +SE++ PY Sbjct: 36585 QALLQAVSDAMASTRQMAKKFAFWSTQPVTKLDEQVTTN---ECIEPNKEISEIRALPYT 36755 Query: 88 LPSVYEWTTCDMNSDDMCSEVYNLLKNNYVEDDENMFRFNYSKEFLRWALRPPGYYQSWH 147 LP ++W T D+N + E+Y LL NYVEDD+ MFRF+Y EFL+W+L+PPG+ + WH Sbjct: 36756 LPGGFKWVTLDLNDANDLKELYTLLNENYVEDDDAMFRFDYQPEFLKWSLQPPGWKRDWH 36935 Query: 148 IGVRAKTSKKLVAFISGVPARIRVRDEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRV 207 +GVR + S KLV FIS +P++++ D+V+K+ +INFLCVHKKLRSKR+APV+I+E+TRRV Sbjct: 36936 VGVRVEKSGKLVGFISAIPSKLKSYDKVLKVVDINFLCVHKKLRSKRVAPVLIREITRRV 37115 Query: 208 HLENIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPD 267 +L I+QAAYTAGV+LPTP+ TC+YWHRSLNPKKL+DV FS L MTM RT+KLYKLPD Sbjct: 37116 NLTGIFQAAYTAGVVLPTPVATCRYWHRSLNPKKLVDVRFSHLARNMTMQRTMKLYKLPD 37295 Query: 268 APITPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPREDVVDSYLVESPE 327 P T G+R++ +D+ +LL +YL +F ++ F + + HW P+E ++D ++V + E Sbjct: 37296 QPKTKGYRRITAKDMDKAHKLLEDYLKRFQLSPVFSKEEFRHWFTPKEGIIDCFVV-ADE 37472 Query: 328 THDVTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMNDALIVSKQKGFDVF 387 ++TD S+Y LPS+++ +P + T++AAYS+YNV+T+T +L LMNDALI ++ DV+ Sbjct: 37473 KGNITDLTSYYCLPSSVMHHPVHKTVRAAYSFYNVSTKTPWLDLMNDALISARNVQMDVY 37652 Query: 388 NALDVMHNESFLKELKFGPGDGQLHYYLYNYRLKSALKPAELGLVLL 434 NALD+M N+ + LKFG GDG L YYLYN+R S ++P E+ L+L+ Sbjct: 37653 NALDLMENKKYFAPLKFGAGDGNLQYYLYNWRCPS-MQPEEIALILM 37790
>gi|8101304|gb|AC010037.5|AC010037 Drosophila melanogaster clone RPCI98-6E4, WORKING DRAFT SEQUENCE, 46 unordered pieces Length = 164659 Score = 428 bits (1100), Expect = e-118 Identities = 201/407 (49%), Positives = 291/407 (71%), Gaps = 4/407 (0%) Frame = -2 Query: 32 ETIVRRFQDSMSE----AKTHKFWETQPVGQFKDIGDTSLPEGPIEPATPLSEVKQEPYN 87 + +++ D+M+ AK FW TQPV + + T+ IEP +SE++ PY Sbjct: 58182 QALLQAVSDAMASTRQMAKKFAFWSTQPVTKLDEQVTTN---ECIEPNKEISEIRALPYT 58012 Query: 88 LPSVYEWTTCDMNSDDMCSEVYNLLKNNYVEDDENMFRFNYSKEFLRWALRPPGYYQSWH 147 LP ++W T D+N + E+Y LL NYVEDD+ MFRF+Y EFL+W+L+PPG+ + WH Sbjct: 58011 LPGGFKWVTLDLNDANDLKELYTLLNENYVEDDDAMFRFDYQPEFLKWSLQPPGWKRDWH 57832 Query: 148 IGVRAKTSKKLVAFISGVPARIRVRDEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRV 207 +GVR + S KLV FIS +P++++ D+V+K+ +INFLCVHKKLRSKR+APV+I+E+TRRV Sbjct: 57831 VGVRVEKSGKLVGFISAIPSKLKSYDKVLKVVDINFLCVHKKLRSKRVAPVLIREITRRV 57652 Query: 208 HLENIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPD 267 +L I+QAAYTAGV+LPTP+ TC+YWHRSLNPKKL+DV FS L MTM RT+KLYKLPD Sbjct: 57651 NLTGIFQAAYTAGVVLPTPVATCRYWHRSLNPKKLVDVRFSHLARNMTMQRTMKLYKLPD 57472 Query: 268 APITPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPREDVVDSYLVESPE 327 P T G+R++ +D+ +LL +YL +F ++ F + + HW P+E ++D ++V + E Sbjct: 57471 QPKTKGYRRITAKDMDKAHKLLEDYLKRFQLSPVFSKEEFRHWFTPKEGIIDCFVV-ADE 57295 Query: 328 THDVTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMNDALIVSKQKGFDVF 387 ++TD S+Y LPS+++ +P + T++AAYS+YNV+T+T +L LMNDALI ++ DV+ Sbjct: 57294 KGNITDLTSYYCLPSSVMHHPVHKTVRAAYSFYNVSTKTPWLDLMNDALISARNVQMDVY 57115 Query: 388 NALDVMHNESFLKELKFGPGDGQLHYYLYNYRLKSALKPAELGLVLL 434 NALD+M N+ + LKFG GDG L YYLYN+R S ++P E+ L+L+ Sbjct: 57114 NALDLMENKKYFAPLKFGAGDGNLQYYLYNWRCPS-MQPEEIALILM 56977
>gi|6996821|gb|AC023733.2|AC023733 Drosophila melanogaster clone RP98-16J21, *** SEQUENCING IN PROGRESS ***, 41 unordered pieces Length = 46913 Score = 350 bits (899), Expect(2) = e-109 Identities = 159/300 (53%), Positives = 229/300 (76%) Frame = -1 Query: 135 WALRPPGYYQSWHIGVRAKTSKKLVAFISGVPARIRVRDEVVKMAEINFLCVHKKLRSKR 194 W+L+PPG+ + WH+GVR + S KLV FIS +P++++ D+V+K+ +INFLCVHKKLRSKR Sbjct: 44072 WSLQPPGWKRDWHVGVRVEKSGKLVGFISAIPSKLKSYDKVLKVVDINFLCVHKKLRSKR 43893 Query: 195 LAPVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARM 254 +APV+I+E+TRRV+L I+QAAYTAGV+LPTP+ TC+YWHRSLNPKKL+DV FS L M Sbjct: 43892 VAPVLIREITRRVNLTGIFQAAYTAGVVLPTPVATCRYWHRSLNPKKLVDVRFSHLARNM 43713 Query: 255 TMSRTIKLYKLPDAPITPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPR 314 TM RT+KLYKLPD P T G+R++ +D+ +LL +YL +F ++ F + + HW P+ Sbjct: 43712 TMQRTMKLYKLPDQPKTKGYRRITAKDMDKAHKLLEDYLKRFQLSPVFSKEEFRHWFTPK 43533 Query: 315 EDVVDSYLVESPETHDVTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMND 374 E ++D ++V + E ++TD S+Y LPS+++ +P + T++AAYS+YNV+T+T +L LMND Sbjct: 43532 EGIIDCFVV-ADEKGNITDLTSYYCLPSSVMHHPVHKTVRAAYSFYNVSTKTPWLDLMND 43356 Query: 375 ALIVSKQKGFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYRLKSALKPAELGLVLL 434 ALI ++ DV+NALD+M N+ + LKFG GDG L YYLYN+R S ++P E+ L+L+ Sbjct: 43355 ALISARNVQMDVYNALDLMENKKYFAPLKFGAGDGNLQYYLYNWRCPS-MQPEEIALILM 43179
Score = 71.2 bits (173), Expect(2) = e-109 Identities = 31/62 (50%), Positives = 41/62 (66%) Frame = -2 Query: 72 IEPATPLSEVKQEPYNLPSVYEWTTCDMNSDDMCSEVYNLLKNNYVEDDENMFRFNYSKE 131 IEP +SE++ PY LP ++W T D+N + E+Y LL NYVEDD+ MFRF+Y E Sbjct: 44260 IEPNKEISEIRALPYTLPGGFKWVTLDLNDANDLKELYTLLNENYVEDDDAMFRFDYQPE 44081 Query: 132 FL 133 FL Sbjct: 44080 FL 44075
>gi|11877285|emb|AL499622.1|LMFLCHR32 Leishmania major chromosome 32,33 clone Chr.32,Chr.33 strain Friedlin, *** SEQUENCING IN PROGRESS ***, in unordered pieces Length = 2727709 Score = 173 bits (439), Expect(2) = 5e-68 Identities = 91/194 (46%), Positives = 126/194 (64%), Gaps = 26/194 (13%) Frame = -1 Query: 158 LVAFISGVPARIRV---------------RDEVVK------MAEINFLCVHKKLRSKRLA 196 L+AFI+GVP +R+ R+E K + EINFLCVHK+LR KRLA Sbjct: 667714 LLAFIAGVPVTLRMGTPKYMKVKAQEKGEREEAAKYDEPRHICEINFLCVHKQLREKRLA 667535 Query: 197 PVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARM-- 254 P++IKE TRRV+ N+WQA YTAGV+LPTP + QY+HRSLNP+KL+++ FS + A+ Sbjct: 667534 PILIKEATRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNPEKLVEIRFSGIPAQYQK 667355 Query: 255 ---TMSRTIKLYKLPDAPITPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWL 311 M+ + Y+LP AP G R+M+P DVP V R+L NYL F V F + ++ H+L Sbjct: 667354 FQNPMAMLKRNYQLPSAPKNSGLREMKPSDVPQVRRILMNYLDSFDVGPVFSDAEISHYL 667175 Query: 312 LPREDVVDSYLVES 325 LPR+ VV +Y+V++ Sbjct: 667174 LPRDGVVFTYVVKT 667133
Score = 110 bits (275), Expect(2) = 5e-68 Identities = 52/104 (50%), Positives = 72/104 (69%) Frame = -3 Query: 331 VTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMNDALIVSKQKGFDVFNAL 390 VTDF SFY +PST++GN NY L AAY +Y AT QL+ D LIV+ +GFDV N + Sbjct: 667124 VTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPLHQLILDLLIVAHSRGFDVCNMV 666945 Query: 391 DVMHNESFLKELKFGPGDGQLHYYLYNYRLKSALKPAELGLVLL 434 +++ N SF+++LKFG GDG L YY YN+ +KP+++ LV+L Sbjct: 666944 EILDNRSFVEQLKFGAGDGHLRYYFYNWAYPK-IKPSQVALVML 666816
Score = 45.8 bits (107), Expect = 0.008 Identities = 18/49 (36%), Positives = 30/49 (60%) Frame = +1 Query: 48 HKFWETQPVGQFKDIGDTSLPEGPIEPATPLSEVKQEPYNLPSVYEWTT 96 H FW TQPV Q +D + + GP++ ++++ +EPY + S +EW T Sbjct: 2597608 HAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFEWWT 2597754
>gi|14161242|emb|AL499621.2|LMFLCHR31 Leishmania major chromosome 31 clone Chr.31 strain Friedlin, *** SEQUENCING IN PROGRESS ***, in ordered pieces Length = 2117963 Score = 239 bits (611), Expect = 3e-61 Identities = 118/234 (50%), Positives = 156/234 (66%), Gaps = 26/234 (11%) Frame = +2 Query: 108 VYNLLKNNYVEDDENMFRFNYSKEFLRWALRPPGYYQSWHIGVRAKTSKKLVAFISGVPA 167 +Y LL++NYVEDD++MFRFNYS+EFL+WAL PP Y WH+ VR K KKL+AFI+GVP Sbjct: 526853 IYELLRDNYVEDDDSMFRFNYSEEFLQWALCPPNYIPDWHVAVRRKADKKLLAFIAGVPV 527032 Query: 168 RIRVR---------------------DEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRR 206 +R+ DE + EINFLCVHK+LR KRLAP++IKE TRR Sbjct: 527033 TLRMGTPKYMKVKAQEKGEGEEAAKYDEPRHICEINFLCVHKQLREKRLAPILIKEATRR 527212 Query: 207 VHLENIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARM-----TMSRTIK 261 V+ N+WQA YTAGV+LPTP + QY+HRSLNP+KL+++ FS + A+ M+ + Sbjct: 527213 VNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNPEKLVEIRFSGIPAQYQKFQNPMAMLKR 527392 Query: 262 LYKLPDAPITPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPRE 315 Y+LP AP G R+M+P DVP V R+L NYL F V F + ++ H+LLPR+ Sbjct: 527393 NYQLPSAPKNSGLREMKPSDVPQVRRILMNYLDSFDVGPVFSDAEISHYLLPRD 527554
>gi|7523611|gb|AC036099.1|AC036099 Giardia intestinalis clone AJ1823 strain WB-C6, LOW-PASS SEQUENCE SAMPLING Length = 976 Score = 97.1 bits (240), Expect(2) = 4e-26 Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 11/155 (7%) Frame = -2 Query: 126 FNYSKEFLRWALRPPGYYQSWHIGVR-----AKTSKKLVAFISGVPARIRVRD----EVV 176 F YSK+ LRW L PG + +G+R ++ +L+ +ISGV + + EV Sbjct: 495 FAYSKDLLRWWLTSPGCKPEYSLGIRIDDPDSEGHGRLIGYISGVVSDYAYSNVDGGEVF 316 Query: 177 K--MAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQYWH 234 M I FLC+ KK RS +LAP++I+E+TRR + ++ A YT+G L PI Y+H Sbjct: 315 SRPMQSIVFLCLDKKYRSLKLAPLLIQEITRRSYKNGVFHAIYTSGTSLTAPIQVATYYH 136 Query: 235 RSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDAP 269 R LNP KL +GF ++ YKLP P Sbjct: 135 RILNPLKLARIGFCTKPKAISDKEFAFFYKLPFLP 31
Score = 47.0 bits (110), Expect(2) = 4e-26 Identities = 28/81 (34%), Positives = 40/81 (48%), Gaps = 4/81 (4%) Frame = -3 Query: 48 HKFWETQPVGQ--FKDIGDTSLPEG--PIEPATPLSEVKQEPYNLPSVYEWTTCDMNSDD 103 H FW TQPV Q + + D +P+ ++PA + LP + WT D + D Sbjct: 728 HAFWNTQPVVQELVEALEDGDMPQDLISVDPA----QHPDTSIPLPEKFVWTAIDPHDDG 561 Query: 104 MCSEVYNLLKNNYVEDDENMF 124 +++Y LL YVED NMF Sbjct: 560 HMADLYKLLHAYYVEDTSNMF 498
>gi|12668551|gb|AC088637.1|AC088637 Giardia intestinalis clone KJ6189 strain WB-C6, LOW-PASS SEQUENCE SAMPLING Length = 900 Score = 120 bits (300), Expect = 3e-25 Identities = 83/271 (30%), Positives = 131/271 (47%), Gaps = 14/271 (5%) Frame = +1 Query: 178 MAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQYWHRSL 237 M I FLC+ KK RS +LAP++I+E+TRR + ++ A YT+G L PI Y+HR L Sbjct: 55 MQSIVFLCLDKKYRSLKLAPLLIQEITRRSYKNGVFHAIYTSGTSLTAPIQVATYYHRIL 234 Query: 238 NPKKLIDVGFSRLGARMTMSRTIKLYKLPDAP--ITPGFRKMEPRDVPAVTRLLRNYL-S 294 NP KL +GF ++ YKLP P ++ F D+P + L Y Sbjct: 235 NPLKLARIGFCTKPKAISDKEFAFFYKLPFLPTALSSCFHVCTEADIPVLYDLYLEYTRR 414 Query: 295 QFGVATDFDENDVEHWLLPREDVVDSYLVESPETHDVTDFCSFYTLPSTILG---NPNYT 351 ++ + + H + R+D + + + E F ++Y + + +L Y Sbjct: 415 KYKFRQIYSKEMFTHVVTHRKDSIHTLVYREKEGGQPDAFITYYIIDTAVLAKDIRKQYP 594 Query: 352 TLKAAYSYY-------NVATQTSFLQLMNDALIVSKQKGFDVFNALDVMHNESFLKELKF 404 ++ Y Y N++ L LM+D + DV AL+V N SF +KF Sbjct: 595 NMRNGYIYLYSLRDDCNLSIGQLVLALMHD----MQNNNIDVCTALNVGLNPSFFSTMKF 762 Query: 405 GPGDGQLHYYLYNYRL-KSALKPAELGLVLL 434 G G+L+YYL+N + K ALK ++G+VL+ Sbjct: 763 AEGSGKLNYYLFNLKWPKMALK--DIGVVLI 849
>gi|11464913|gb|AC086986.1|AC086986 Giardia intestinalis clone MJ5420 strain WB-C6, LOW-PASS SEQUENCE SAMPLING Length = 917 Score = 92.8 bits (229), Expect(3) = 1e-22 Identities = 53/133 (39%), Positives = 76/133 (56%), Gaps = 11/133 (8%) Frame = -3 Query: 126 FNYSKEFLRWALRPPGYYQSWHIGVR-----AKTSKKLVAFISGVPARIRVRD----EVV 176 F YSK+ LRW L PG + +G+R ++ +L+ +ISGV + + EV Sbjct: 438 FAYSKDLLRWWLTSPGCKPEYSLGIRIDDPDSEGHGRLIGYISGVVSDYAYSNVDGGEVF 259 Query: 177 K--MAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQYWH 234 M I FLC+ KK RS +LAP++I+E+TRR + ++ A YT+G L PI Y+H Sbjct: 258 SRPMQSIVFLCLDKKYRSLKLAPLLIQEITRRSYKNGVFHAIYTSGTSLTAPIQVATYYH 79 Query: 235 RSLNPKKLIDVGF 247 R LNP KL +GF Sbjct: 78 RILNPLKLARIGF 40
Score = 37.0 bits (84), Expect(3) = 1e-22 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -1 Query: 88 LPSVYEWTTCDMNSDDMCSEVYNLLKNNYVEDDENMF 124 LP + WT D + D +++Y LL YVED NMF Sbjct: 551 LPEKFVWTAIDPHDDGHMADLYKLLHAYYVEDTSNMF 441
Score = 22.7 bits (47), Expect(3) = 1e-22 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = -3 Query: 48 HKFWETQPVGQ 58 H FW TQPV Q Sbjct: 672 HAFWNTQPVVQ 640
>gi|14330108|emb|AL590365.6|AL590365 Homo sapiens chromosome 10 clone RP11-455B2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces Length = 191226 Score = 96.3 bits (238), Expect = 5e-18 Identities = 44/58 (75%), Positives = 52/58 (88%) Frame = +1 Query: 175 VVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQY 232 V KM EINFLCVHKKLRSKR+APV+I+E+TRRV+LE I+QA YTAGV+LP PI TC+Y Sbjct: 98527 VKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPIATCRY 98700
Score = 68.2 bits (165), Expect = 1e-09 Identities = 30/50 (60%), Positives = 42/50 (84%) Frame = +3 Query: 331 VTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMNDALIVSK 380 +TDF SFYTLPST++ +P + +LKAAYS+YN+ T+T L LM+DALI++K Sbjct: 115890 LTDFLSFYTLPSTVMHHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAK 116039
Score = 67.8 bits (164), Expect = 2e-09 Identities = 30/49 (61%), Positives = 40/49 (81%) Frame = +1 Query: 371 LMNDALIVSKQKGFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYR 419 ++N ++ QKGFDVFNALD+M N++FL++LKFG GDG L YYLYN+R Sbjct: 118966 VLNFKSFLNWQKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWR 119112
Score = 63.5 bits (153), Expect = 4e-08 Identities = 26/54 (48%), Positives = 37/54 (68%) Frame = +2 Query: 271 TPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPREDVVDSYLVE 324 T G R MEP+D+ +V L+ YL QF +A DE +V HW LPRE ++D+++VE Sbjct: 109334 TSGLRPMEPKDIKSVRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVE 109495
Score = 61.2 bits (147), Expect = 2e-07 Identities = 25/42 (59%), Positives = 33/42 (78%) Frame = +1 Query: 226 PITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPD 267 P+ +YWHRSLNP+KL++V FS L MT+ RT+KLY+LPD Sbjct: 100363 PLLYSRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPD 100488
Score = 59.3 bits (142), Expect(3) = 2e-20 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = +2 Query: 136 ALRPPGYYQSWHIGVRAKTSKKLVAFISGVPARIRVRDE-VVKMAEINFLCVHKK 189 ALRPPG+ WH GVR ++KKLV FIS +PA IR+ D + K+ F+C+ K Sbjct: 95741 ALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDRYMFKLVHAVFICLFSK 95905
Score = 50.8 bits (120), Expect(3) = 2e-20 Identities = 21/29 (72%), Positives = 24/29 (82%) Frame = +3 Query: 107 EVYNLLKNNYVEDDENMFRFNYSKEFLRW 135 E+Y LL NYVEDD+NMFRF+YS EFL W Sbjct: 95535 ELYTLLNENYVEDDDNMFRFDYSPEFLLW 95621
Score = 34.3 bits (77), Expect(3) = 2e-20 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +2 Query: 70 GPIEPATPLSEVKQEPYNLPSVYEWTTCDMNSDDMCSE 107 G IEP V+QEPY+LP + W T D++ ++ SE Sbjct: 95330 GAIEPDK--DNVRQEPYSLPQGFMWDTLDLSDAEVVSE 95437
>gi|13396388|emb|AL157391.8|AL157391 Homo sapiens chromosome 10 clone RP11-271M1, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces Length = 167456 Score = 96.3 bits (238), Expect = 5e-18 Identities = 44/58 (75%), Positives = 52/58 (88%) Frame = +3 Query: 175 VVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQY 232 V KM EINFLCVHKKLRSKR+APV+I+E+TRRV+LE I+QA YTAGV+LP PI TC+Y Sbjct: 152286 VKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPIATCRY 152459
Score = 68.2 bits (165), Expect = 1e-09 Identities = 30/50 (60%), Positives = 42/50 (84%) Frame = -3 Query: 331 VTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMNDALIVSK 380 +TDF SFYTLPST++ +P + +LKAAYS+YN+ T+T L LM+DALI++K Sbjct: 81075 LTDFLSFYTLPSTVMHHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAK 80926
Score = 67.8 bits (164), Expect = 2e-09 Identities = 30/49 (61%), Positives = 40/49 (81%) Frame = -2 Query: 371 LMNDALIVSKQKGFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYR 419 ++N ++ QKGFDVFNALD+M N++FL++LKFG GDG L YYLYN+R Sbjct: 77959 VLNFKSFLNWQKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWR 77813
Score = 63.5 bits (153), Expect = 4e-08 Identities = 26/54 (48%), Positives = 37/54 (68%) Frame = -1 Query: 271 TPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPREDVVDSYLVE 324 T G R MEP+D+ +V L+ YL QF +A DE +V HW LPRE ++D+++VE Sbjct: 87914 TSGLRPMEPKDIKSVRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVE 87753
Score = 61.2 bits (147), Expect = 2e-07 Identities = 25/42 (59%), Positives = 33/42 (78%) Frame = +3 Query: 226 PITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPD 267 P+ +YWHRSLNP+KL++V FS L MT+ RT+KLY+LPD Sbjct: 154122 PLLYSRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPD 154247
Score = 59.3 bits (142), Expect(3) = 2e-20 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = +1 Query: 136 ALRPPGYYQSWHIGVRAKTSKKLVAFISGVPARIRVRDE-VVKMAEINFLCVHKK 189 ALRPPG+ WH GVR ++KKLV FIS +PA IR+ D + K+ F+C+ K Sbjct: 149665 ALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDRYMFKLVHAVFICLFSK 149829
Score = 50.8 bits (120), Expect(3) = 2e-20 Identities = 21/29 (72%), Positives = 24/29 (82%) Frame = +2 Query: 107 EVYNLLKNNYVEDDENMFRFNYSKEFLRW 135 E+Y LL NYVEDD+NMFRF+YS EFL W Sbjct: 149459 ELYTLLNENYVEDDDNMFRFDYSPEFLLW 149545
Score = 34.3 bits (77), Expect(3) = 2e-20 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 70 GPIEPATPLSEVKQEPYNLPSVYEWTTCDMNSDDMCSE 107 G IEP V+QEPY+LP + W T D++ ++ SE Sbjct: 149254 GAIEPDK--DNVRQEPYSLPQGFMWDTLDLSDAEVVSE 149361
>gi|7534532|gb|AC041267.1|AC041267 Giardia intestinalis clone EJ4117 strain WB-C6, LOW-PASS SEQUENCE SAMPLING Length = 833 Score = 95.5 bits (236), Expect = 8e-18 Identities = 74/265 (27%), Positives = 119/265 (43%), Gaps = 19/265 (7%) Frame = +3 Query: 157 KLVAFISGVPARIRVRD----EVVK--MAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLE 210 +L+ +ISGV + + EV M I FLC+ KK RS +LAP++I+E+TRR + Sbjct: 51 RLIGYISGVVSDYAYSNVDGGEVFSRPMQSIVFLCLDKKYRSLKLAPLLIQEITRRSYKN 230 Query: 211 NIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDAP- 269 ++ A YT+G L PI Y+HR LNP KL +GF ++ YKLP P Sbjct: 231 GVFHAIYTSGTSLTAPIQVATYYHRILNPLKLARIGFCTKPKAISXKEFAFFYKLPFLPT 410 Query: 270 -ITPGFRKMEPRDVPAVTRLLRNYL-SQFGVATDFDENDVEHWLLPREDVVDSYLVESPE 327 ++ F D+P + L Y ++ + + H + R+D + + + E Sbjct: 411 ALSSCFHVCTEADIPVLYDLYLEYTRRKYKFRQIYSKXMFTHVVTHRKDSIHTLVYREKE 590 Query: 328 THDVTDFCSFYTLPSTILG---NPNYTTLKAAYSYY-------NVATQTSFLQLMNDALI 377 F ++Y + + +L Y ++ AY Y N++ L LM+D Sbjct: 591 GGQPDAFITYYIIDTAVLAKDIRKQYPNMRNAYIYLYSLRDDCNLSIGQLVLALMHD--- 761 Query: 378 VSKQKGFDVFNALDVMHNESFLKEL 402 + D AL+V N SF + Sbjct: 762 -MQNNXIDXCTALNVGLNPSFFSTM 833
>gi|9589982|gb|AC075683.1|AC075683 Giardia intestinalis clone EJ7595 strain WB-C6, LOW-PASS SEQUENCE SAMPLING Length = 580 Score = 75.9 bits (185), Expect = 7e-12 Identities = 45/127 (35%), Positives = 65/127 (50%), Gaps = 9/127 (7%) Frame = +1 Query: 48 HKFWETQPVGQ--FKDIGDTSLPEG--PIEPATPLSEVKQEPYNLPSVYEWTTCDMNSDD 103 H FW TQPV Q + + D +P+ ++PA + LP + WT D + D Sbjct: 124 HAFWNTQPVVQELVEALEDGDMPQDLISVDPA----QHPDTSIPLPEKFVWTAIDPHDDG 291 Query: 104 MCSEVYNLLKNNYVEDDENMFRFNYSKEFLRWALRPPGYYQSWHIGVR-----AKTSKKL 158 +++Y LL YVED NMFRF YSK LRW L PG + +G+R ++ +L Sbjct: 292 HMADLYKLLHAYYVEDTSNMFRFAYSKXLLRWWLTSPGCKPEYSLGIRIDDPDSEGHGRL 471 Query: 159 VAFISGV 165 + +I GV Sbjct: 472 IGYIXGV 492
>gi|7575856|gb|AC052536.1|AC052536 Giardia intestinalis clone KJ3685 strain WB-C6, LOW-PASS SEQUENCE SAMPLING Length = 1010 Score = 43.1 bits (100), Expect = 0.049 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Frame = +2 Query: 350 YTTLKAAYSYY-------NVATQTSFLQLMNDALIVSKQKGFDVFNALDVMHNESFLKEL 402 Y ++ Y Y N++ L LM+D + DV AL+V N SF + Sbjct: 23 YPNMRNGYIYLYSLRDDCNLSIGQLVLALMHDM----QNNNIDVCTALNVGLNPSFFSTM 190 Query: 403 KFGPGDGQLHYYLYNYRL-KSALKPAELGLVLL 434 KF G G+L+YYL N + K ALK ++G+VL+ Sbjct: 191 KFAEGSGKLNYYLXNLKWPKMALK--DIGVVLI 283
>gi|8468967|gb|AC068279.3|AC068279 Homo sapiens chromosome 2 clone RP11-153P14, WORKING DRAFT SEQUENCE, 14 unordered pieces Length = 136555 Score = 37.0 bits (84), Expect = 3.5 Identities = 22/78 (28%), Positives = 34/78 (43%) Frame = -3 Query: 6 SPPGSVEQKADQIVEANPLVKDDTSLETIVRRFQDSMSEAKTHKFWETQPVGQFKDIGDT 65 S PG + Q A Q +ANP + + +++ +H +QP Q + Sbjct: 22052 SQPGQLNQPASQASQANPASQASPANP-------HKPAKSASHTSQPSQPASQASQVSQA 21894 Query: 66 SLPEGPIEPATPLSEVKQ 83 S P P +PA PLS+ Q Sbjct: 21893 SQPAKPAKPAKPLSQPSQ 21840
Database: High-Throughput Genome Sequences Posted date: Jun 29, 2001 7:49 PM Number of letters in database: 60,694,059 Number of sequences in database: 86,009 Lambda K H 0.319 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: -2005518695 Number of Sequences: 86009 Number of extensions: 34065957 Number of successful extensions: 134705 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 73505 Number of HSP's successfully gapped in prelim test: 2324 Number of HSP's that attempted gapping in prelim test: 19333 Number of HSP's gapped (non-prelim): 127903 length of query: 434 length of database: 1,451,887,118 effective HSP length: 138 effective length of query: 296 effective length of database: 1,440,017,876 effective search space: 426245291296 effective search space used: 426245291296 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits)
