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comparison: overlap of the big-Pi plant predictions in Arabidopsis thaliana with the list created by Borner GHH et al. (2002)

Contact:
Birgit Eisenhaber (IMP/Austria)
Michael Wildpaner (IMP/Austria)
Frank Eisenhaber (IMP/Austria)
Carolyn Schultz (University of Adelaide/Australia)
Paul Dupree and Georg Borner (University of Cambridge/UK)

Summary Table:

  Borner et al. 2002 Eisenhaber et al. 2003
Number of proteins with predicted GPI modification and predicted N-terminal Signal Peptide 208 187
Number of proteins contained in both lists 132 132
Number of proteins which are predicted as GPI candidates by the big-Pi program but not having a predicted Signal Peptide by SignalP version 1.2 4  
Number of proteins not in the release June 2002 of the A.thaliana genome (9)  
Number of proteins not in the release June 2002 of the A.thaliana genome predicted by the big-Pi program as GPI candidates 5  
Number of proteins that are predicted to be GPI modified only by Borner et al. 67  
Number of proteins that are predicted to be GPI modified only by Eisenhaber et al.   55

The A.thaliana proteins which are predicted as suitable GPI candidates only with the big-Pi plant program are listed in detail:

AGP related (classical AGPs, AG-peptides, Lys-rich, fasciclin-like)

At5g18690-68299.m01957
At3g06360-68298.m00640
At3g26110-68298.m02871
At5g40730-68299.m03748
At5g16920-68299.m01758

Phytocyanin-like (stellacyanin-like, uclacyanin-like, early nodulin-like, PF02298)

At1g21090-68300.m02292
At4g28365-68296.m03069
At5g25090-68299.m02560

Glycohydrolases(families 1,5,8 or 17; PF00232, PF00150, PF01501, PF00322)

At1g64760-68300.m06370
At1g11820-68300.m08280
At2g01630-68297.m00066
At2g26600-68297.m02719
At3g04010-68298.m00369
At3g13560-68298.m01457
At3g15800-68298.m01714
At4g13600-68296.m01383
At5g20870-68299.m02188
At1g32860-68300.m03531

Pectin metabolism relaed

At3g53190-68298.m05033
At5g04310-68299.m00385
At3g17220-68298.m01892

Proteases

LTP family/seed storage/protease inhibitor (PF00234)

At1g27950-68300.m02988
At1g36150-68300.m03940
At1g62790-68300.m06154
At1g73560-68300.m07410
At2g13820-68297.m01269
At3g22620-68298.m02494
At4g14815-68296.m01517

Kazal-type serine protease inhibitors (PF00050)

At4g01575-68296.m00178

Signalling receptor-like

At2g25790-68297.m02632
At5g67130-68299.m06773
At2g36500-68297.m03826

Cation transporters

At1g68100-68300.m06759
At2g32270-68297.m03363

Other functions

At5g01990-68299.m00105
At5g62200-68299.m06201
At1g21880-68300.m02377
At3g20590-68298.m02264
At3g20600-68298.m02265
At5g42590-68299.m03960

Hypothetical proteins/unknown function

At1g23050-68300.m02503
At1g70985-68300.m07117
At2g21180-68297.m02125
At3g20865-68298.m02293
At4g16985-68296.m01752
At4g28085-68296.m03039
At4g29735-68296.m03228
At4g30670-68296.m03330
At5g19230-68299.m02017
At5g19250-68299.m02019
At4g30770-68296.m03340
At3g06035-68298.m00600



Last modified: 20th March 2003