# 
# ------------------------------------------------------------------- #
# 
# package *-> main.IRIX <-*
# *************************
# 
# name of executable           : main.IRIX
# time of program compilation  : Feb 25 1998 (11:06:48)
# time of program execution    : Wed Feb 25 11:09:19 1998
# version of the code          : $Revision: 1.12 $ ($Date: 1998/02/20 09:57:18 $)
# 
ReadAapLib: AAProperty library <aa_all.lib> opened
Number of entrys in AapLib: <638>
-->ReadGPILib: GPI library </home/beisenha/GPI/gpi.swn.swiss> opened
ID: <MDP1_HUMAN>
AALen: <411>
number of AC-num: <1>
AcNum : <0> : <P16444>
GPIPos: <385>
GPICom: <.>
SEQ: <QASNLTQAPEEEPIPLDQLGGSCRTHYGYSSGASSLHRHWGLLLASLAPLVLCLSLL>
nfile: <1>
flag: <1>
number of entries of file 1                   :     1
number of accepted entries of file 1          :     1
total number of entries                       :     1

-->Statistic_confidence of GPILib 1 : 
number of accepted entries                    :     1
number of entries with certain GPI-site       :     1
number of entries with potential GPI-site     :     0
number of entries with GPI-site by similarity :     0

-->GPIStatistic_Length: GPILibNumber = 1
Lmin                :  26 ( entry: MDP1_HUMAN, file: 1 )
Lmax                :  26 ( entry: MDP1_HUMAN, file: 1 )
deltaL              :   0
number of intervals :   1
interval of length   from     to    number of entries
                 1     26     26                    1
total number of entries                       :     1

-->Statistic_taxonomy of GPILib 1 / total number of entries 1
     1 EUKARYOTA
     1 ..METAZOA
     1 ....VERTEBRATA
     1 ......MAMMALIA
     1 ........PRIMATES

-->ReadGPILib: GPI library </home/beisenha/GPI/gpi.swp.swiss> opened
 INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORCA> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORMA> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <CEPU_CHICK> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <DAF_HUMAN> .!!
 INFO> EntryExists: <MDP1_HUMAN> excluded, equal AC-Num=<P16444> with <MDP1_HUMAN>, file <1> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <UPAR_RAT> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <VCA1_MOUSE> .!!
number of entries of file 2                   :   155
number of accepted entries of file 2          :   154
total number of entries                       :   155

-->Statistic_confidence of GPILib 2 : 
number of accepted entries                    :   154
number of entries with certain GPI-site       :    35
number of entries with potential GPI-site     :    55
number of entries with GPI-site by similarity :    64

-->GPIStatistic_Length: GPILibNumber = 2
Lmin                :   9 ( entry: PAG1_TRYBB, file: 2 )
Lmax                :  56 ( entry: GP46_LEIAM, file: 2 )
deltaL              :   5
number of intervals :  10
interval of length   from     to    number of entries
                 1      9     14                    1
                 2     15     19                   27
                 3     20     24                   64
                 4     25     29                   48
                 5     30     34                    8
                 6     35     39                    4
                 7     40     44                    0
                 8     45     49                    1
                 9     50     54                    0
                10     55     59                    1
total number of entries                       :   154

-->Statistic_taxonomy of GPILib 2 / total number of entries 154
     1 VIRIDAE
   153 EUKARYOTA
   103 ..METAZOA
     3 ....INSECTA
    98 ....VERTEBRATA
     3 ......PISCES
     4 ......AVES
    91 ......MAMMALIA
    49 ........PRIMATES
    10 ..FUNGI
    40 ..PROTOZOA

-->Flags of all entries except METAZOA switched off

-->Flags of all entries with AALen-GPIPos > 31 switched off

-->Flags of all entries with AALen-GPIPos < 17 switched off

NSubFam = 45
Profile:
Ala 0.0463 0.0456 0.0464 0.0235 0.0698 0.0116 0.0247 0.0723 0.1216 0.2944 0.0477 0.0732 0.0543 0.0995 0.0709 0.0005 0.2063 0.2976 0.0238 0.0227 0.0237 0.0771 0.1051 0.0697 0.0464 0.0438 0.0827 0.0360 0.0617 0.1099 0.0838 0.0481 0.1236 0.0569 0.0648 0.1182 0.0956 0.0793 0.0585 0.0503 0.1694 
Cys 0.0116 0.0377 0.0724 0.0471 0.0582 0.0737 0.0008 0.0488 0.0486 0.0118 0.0497 0.0237 0.0234 0.0005 0.0241 0.0745 0.0002 0.0001 0.0007 0.0227 0.0237 0.0117 0.0004 0.0583 0.0002 0.0002 0.0243 0.0240 0.0123 0.0002 0.0002 0.0002 0.0117 0.0121 0.0126 0.0130 0.0002 0.0132 0.0454 0.0644 0.0246 
Asp 0.0016 0.0484 0.0236 0.0204 0.0466 0.0567 0.0355 0.0474 0.0238 0.0353 0.0953 0.0593 0.0116 0.0016 0.0121 0.0813 0.0237 0.0005 0.0119 0.0018 0.0010 0.0016 0.0012 0.0008 0.0008 0.0006 0.0005 0.0005 0.0007 0.0005 0.0006 0.0007 0.0008 0.0007 0.0008 0.0007 0.0007 0.0007 0.0009 0.0015 0.0016 
Glu 0.0503 0.0121 0.0473 0.0353 0.2692 0.0604 0.2601 0.0013 0.0137 0.0353 0.0375 0.0618 0.0348 0.0361 0.0392 0.0004 0.0237 0.0005 0.0357 0.0113 0.0119 0.0352 0.0371 0.0008 0.0008 0.0006 0.0005 0.0005 0.0007 0.0005 0.0006 0.0007 0.0008 0.0007 0.0008 0.0007 0.0007 0.0007 0.0009 0.0215 0.0017 
Phe 0.0116 0.0362 0.0356 0.0007 0.0116 0.0349 0.0473 0.0118 0.0119 0.0572 0.0009 0.0237 0.0116 0.0011 0.0362 0.0002 0.0119 0.0003 0.0015 0.0454 0.2493 0.0233 0.0008 0.0005 0.0696 0.0902 0.0120 0.0724 0.0617 0.0245 0.0237 0.2767 0.0959 0.0004 0.2402 0.0261 0.0827 0.0397 0.0145 0.0644 0.0242 
Gly 0.0244 0.0483 0.0956 0.0014 0.0233 0.0366 0.0608 0.0718 0.0119 0.0353 0.0451 0.0373 0.0929 0.0869 0.2293 0.1241 0.2351 0.2520 0.0610 0.0227 0.0356 0.0817 0.0860 0.0939 0.0464 0.0937 0.0120 0.0120 0.0009 0.0368 0.0118 0.0427 0.0234 0.0243 0.0255 0.0130 0.0276 0.0010 0.2907 0.1718 0.0972 
His 0.0125 0.0261 0.0118 0.0119 0.0116 0.0232 0.0118 0.0005 0.0014 0.0021 0.0119 0.0237 0.0021 0.0120 0.0121 0.0001 0.0003 0.0002 0.0542 0.0567 0.0356 0.0827 0.0119 0.0232 0.0582 0.0002 0.0002 0.0002 0.0003 0.0002 0.0118 0.0003 0.0117 0.0243 0.0253 0.0391 0.0003 0.0003 0.0145 0.0644 0.0786 
Ile 0.2433 0.0015 0.0473 0.0009 0.0349 0.0581 0.0022 0.0118 0.0238 0.0118 0.0012 0.0237 0.0464 0.0240 0.0029 0.0003 0.0007 0.0004 0.0595 0.0340 0.0950 0.0487 0.0119 0.0232 0.0348 0.0232 0.2768 0.0840 0.0971 0.2943 0.0621 0.0602 0.0372 0.3157 0.0379 0.0872 0.2894 0.0397 0.0291 0.0215 0.0484 
Lys 0.0786 0.0017 0.0473 0.0951 0.0827 0.1860 0.0238 0.0623 0.0342 0.0355 0.0238 0.0593 0.0433 0.0467 0.0724 0.0003 0.0119 0.0005 0.0119 0.0113 0.0010 0.0016 0.0246 0.0494 0.0232 0.0116 0.0005 0.0005 0.0247 0.0005 0.0006 0.0007 0.0117 0.0007 0.0008 0.0007 0.0007 0.0132 0.0009 0.0015 0.0016 
Leu 0.0581 0.0438 0.0473 0.0488 0.0905 0.0030 0.0968 0.0278 0.0476 0.0236 0.0596 0.0119 0.0715 0.0753 0.0121 0.0005 0.0119 0.0604 0.0476 0.3070 0.2334 0.0935 0.0485 0.0581 0.1088 0.1874 0.2966 0.5740 0.5301 0.2471 0.1524 0.3025 0.4477 0.3256 0.2273 0.5330 0.2524 0.2277 0.2680 0.2309 0.0968 
Met 0.0006 0.0483 0.0011 0.0004 0.0116 0.0116 0.0118 0.0005 0.0013 0.0118 0.0238 0.0007 0.0116 0.0120 0.0134 0.0001 0.0003 0.2414 0.0357 0.0113 0.0119 0.0117 0.0119 0.0003 0.0003 0.0002 0.0120 0.0002 0.0247 0.0002 0.0002 0.0003 0.0117 0.0550 0.0126 0.0261 0.0276 0.0264 0.0003 0.0218 0.0006 
Asn 0.0579 0.0579 0.0473 0.0483 0.0784 0.0474 0.0591 0.0474 0.0968 0.0120 0.0620 0.0776 0.0116 0.0120 0.0483 0.0900 0.0006 0.0004 0.0119 0.0227 0.0008 0.0117 0.0356 0.0006 0.0464 0.0005 0.0004 0.0004 0.0005 0.0004 0.0005 0.0241 0.0007 0.0005 0.0126 0.0006 0.0006 0.0132 0.0007 0.0012 0.0013 
Pro 0.0589 0.0403 0.0384 0.1061 0.0567 0.0349 0.0946 0.0712 0.0677 0.0962 0.0279 0.0356 0.0579 0.0481 0.0483 0.0003 0.0007 0.0004 0.0937 0.0555 0.0492 0.0233 0.1053 0.2912 0.3040 0.0688 0.0120 0.0120 0.0123 0.0123 0.0237 0.0496 0.0117 0.0486 0.0007 0.0006 0.0138 0.0006 0.0291 0.0215 0.1004 
Gln 0.0579 0.0603 0.2364 0.0834 0.0349 0.0232 0.0118 0.0355 0.2260 0.0135 0.0238 0.0474 0.2581 0.0240 0.0241 0.0372 0.0119 0.0121 0.0119 0.0340 0.0007 0.0350 0.0008 0.0930 0.0232 0.0004 0.0003 0.0003 0.0123 0.0003 0.0004 0.0005 0.0117 0.0121 0.0005 0.0130 0.0005 0.0399 0.0145 0.1074 0.0726 
Arg 0.0013 0.0121 0.0024 0.0235 0.0019 0.1513 0.0236 0.0010 0.0682 0.1070 0.0011 0.0460 0.0232 0.2764 0.0686 0.0003 0.0237 0.0121 0.0238 0.0567 0.0358 0.0117 0.0237 0.0116 0.0006 0.0005 0.0004 0.0004 0.0123 0.0004 0.0118 0.0120 0.0006 0.0005 0.0253 0.0391 0.0551 0.0132 0.0007 0.0461 0.0242 
Ser 0.0648 0.0965 0.0356 0.0941 0.0233 0.0349 0.0946 0.3343 0.0684 0.0353 0.0596 0.0476 0.1159 0.0361 0.0933 0.5768 0.4007 0.0362 0.1191 0.1938 0.0824 0.3792 0.4120 0.1191 0.0008 0.0581 0.1575 0.0720 0.0707 0.0613 0.4817 0.0361 0.0685 0.0609 0.0885 0.0007 0.0551 0.0926 0.0713 0.0215 0.0726 
Thr 0.1275 0.3105 0.0537 0.0766 0.0466 0.0351 0.0916 0.0829 0.0506 0.1098 0.1173 0.0954 0.0348 0.1112 0.1106 0.0124 0.0237 0.0726 0.0828 0.0576 0.0237 0.0233 0.0356 0.0465 0.1289 0.0811 0.0005 0.0005 0.0516 0.0475 0.0978 0.0602 0.0352 0.0121 0.1011 0.0132 0.0138 0.0007 0.0438 0.0215 0.0628 
Val 0.0579 0.0603 0.0118 0.0588 0.0349 0.0472 0.0368 0.0474 0.0580 0.0236 0.0238 0.0023 0.0232 0.0841 0.0362 0.0004 0.0119 0.0121 0.2998 0.0310 0.0237 0.0350 0.0356 0.0465 0.0582 0.3269 0.0984 0.0621 0.0247 0.1381 0.0357 0.0722 0.0596 0.0243 0.1098 0.0391 0.0691 0.3285 0.0291 0.0018 0.0726 
Trp 0.0116 0.0004 0.0236 0.0002 0.0116 0.0005 0.0006 0.0003 0.0009 0.0014 0.0003 0.0005 0.0014 0.0004 0.0008 0.0001 0.0002 0.0001 0.0119 0.0004 0.0377 0.0004 0.0003 0.0129 0.0368 0.0116 0.0001 0.0480 0.0002 0.0245 0.0001 0.0002 0.0352 0.0002 0.0002 0.0226 0.0138 0.0562 0.0581 0.0004 0.0004 
Tyr 0.0232 0.0121 0.0750 0.2235 0.0015 0.0697 0.0118 0.0237 0.0238 0.0471 0.2875 0.2491 0.0705 0.0120 0.0451 0.0002 0.0005 0.0003 0.0014 0.0011 0.0237 0.0117 0.0119 0.0005 0.0116 0.0004 0.0120 0.0003 0.0004 0.0003 0.0004 0.0120 0.0005 0.0243 0.0126 0.0130 0.0004 0.0132 0.0291 0.0644 0.0484 

ConsensSequence: i t q y e k e s q a y y q r g S s a v l f s s p p v l L L i s l l l f L i v g l a

Pos: -15
SelectAapCorrelation: < >
TWO_AA_I_T: 0.83|two AA frequency -> IT (Eisenhaber & Eisenhaber, 1997)
ONE_AA__I_: 0.82|single AA frequency -> I (Eisenhaber & Eisenhaber, 1997)

Pos: -14
SelectAapCorrelation: < >
ONE_AA__T_: 0.93|single AA frequency -> T (Eisenhaber & Eisenhaber, 1997)
TWO_AA_S_T: 0.80|two AA frequency -> ST (Eisenhaber & Eisenhaber, 1997)
TWO_AA_Q_T: 0.70|two AA frequency -> QT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_T_V: 0.70|two AA frequency -> TV (Eisenhaber & Eisenhaber, 1997)

Pos: -13
SelectAapCorrelation: < >
ONE_AA__Q_: 0.88|single AA frequency -> Q (Eisenhaber & Eisenhaber, 1997)
TWO_AA_Q_G: 0.79|two AA frequency -> QG (Eisenhaber & Eisenhaber, 1997)
TWO_AA_Q_Y: 0.72|two AA frequency -> QY (Eisenhaber & Eisenhaber, 1997)
TWO_AA_C_Q: 0.71|two AA frequency -> CQ (Eisenhaber & Eisenhaber, 1997)

Pos: -12
SelectAapCorrelation: < >
ONE_AA__Y_: 0.76|single AA frequency -> Y (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_Y: 0.73|two AA frequency -> PY (Eisenhaber & Eisenhaber, 1997)

Pos: -11
SelectAapCorrelation: < >
ONE_AA__E_: 0.88|single AA frequency -> E (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_L: 0.76|two AA frequency -> EL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_K: 0.74|two AA frequency -> EK (Eisenhaber & Eisenhaber, 1997)
TWO_AA_N_E: 0.73|two AA frequency -> NE (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_E: 0.70|two AA frequency -> AE (Eisenhaber & Eisenhaber, 1997)

Pos: -10
SelectAapCorrelation: < >
TWO_AA_R_K: 0.88|two AA frequency -> RK (Eisenhaber & Eisenhaber, 1997)
EISD860102: 0.77|Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986)
JANJ780101: 0.70|Average accessible surface area (Janin et al., 1978)

Pos: -9
SelectAapCorrelation: < >
ONE_AA__E_: 0.83|single AA frequency -> E (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_L: 0.74|two AA frequency -> EL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_P: 0.73|two AA frequency -> EP (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_S: 0.73|two AA frequency -> ES (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_T: 0.72|two AA frequency -> ET (Eisenhaber & Eisenhaber, 1997)

Pos: -8
SelectAapCorrelation: < >
ONE_AA__S_: 0.92|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
TWO_AA_S_T: 0.75|two AA frequency -> ST (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_S: 0.72|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_S: 0.72|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_S: 0.72|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA0: 0.71|Udenfriend : (omega + 0)- site

Pos: -7
SelectAapCorrelation: < >
TWO_AA_A_Q: 0.80|two AA frequency -> AQ (Eisenhaber & Eisenhaber, 1997)
ONE_AA__Q_: 0.78|single AA frequency -> Q (Eisenhaber & Eisenhaber, 1997)
TWO_AA_N_Q: 0.72|two AA frequency -> NQ (Eisenhaber & Eisenhaber, 1997)

Pos: -6
SelectAapCorrelation: < >
ONE_AA__A_: 0.87|single AA frequency -> A (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_T: 0.79|two AA frequency -> AT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_R: 0.78|two AA frequency -> AR (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_P: 0.75|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.70|Udenfriend : (omega + 2)- site

Pos: -5
SelectAapCorrelation: < >
ONE_AA__Y_: 0.87|single AA frequency -> Y (Eisenhaber & Eisenhaber, 1997)
TWO_AA_T_Y: 0.81|two AA frequency -> TY (Eisenhaber & Eisenhaber, 1997)
TWO_AA_D_Y: 0.76|two AA frequency -> DY (Eisenhaber & Eisenhaber, 1997)

Pos: -4
SelectAapCorrelation: < >
ONE_AA__Y_: 0.87|single AA frequency -> Y (Eisenhaber & Eisenhaber, 1997)
TWO_AA_T_Y: 0.78|two AA frequency -> TY (Eisenhaber & Eisenhaber, 1997)
TWO_AA_N_Y: 0.72|two AA frequency -> NY (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_Y: 0.71|two AA frequency -> AY (Eisenhaber & Eisenhaber, 1997)

Pos: -3
SelectAapCorrelation: < >
ONE_AA__Q_: 0.85|single AA frequency -> Q (Eisenhaber & Eisenhaber, 1997)
TWO_AA_Q_S: 0.81|two AA frequency -> QS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_Q_G: 0.74|two AA frequency -> QG (Eisenhaber & Eisenhaber, 1997)

Pos: -2
SelectAapCorrelation: < >
ONE_AA__R_: 0.83|single AA frequency -> R (Eisenhaber & Eisenhaber, 1997)
TWO_AA_R_T: 0.77|two AA frequency -> RT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_R: 0.74|two AA frequency -> AR (Eisenhaber & Eisenhaber, 1997)
TWO_AA_R_G: 0.70|two AA frequency -> RG (Eisenhaber & Eisenhaber, 1997)

Pos: -1
SelectAapCorrelation: < >
CHAM810101:-0.89|Steric parameter (Charton, 1981)
FAUJ880102:-0.83|Smoothed upsilon steric parameter (Fauchere et al., 1988)
LEVM760104: 0.83|Side chain torsion angle phi(AAAR) (Levitt, 1976)
ONE_AA__G_: 0.81|single AA frequency -> G (Eisenhaber & Eisenhaber, 1997)
MAXF760105: 0.80|Normalized frequency of zeta L (Maxfield-Scheraga, 1976)
TWO_AA_G_T: 0.79|two AA frequency -> GT (Eisenhaber & Eisenhaber, 1997)
RICJ880115: 0.75|Relative preference value at C-cap (Richardson-Richardson, 1988)
TWO_AA_G_S: 0.73|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
MAXF760104: 0.73|Normalized frequency of left-handed alpha-helix (Maxfield-Scheraga, 1976)
OOBM850105: 0.72|Optimized side chain interaction parameter (Oobatake et al., 1985)

Pos: 0
SelectAapCorrelation: < >
ONE_AA__S_: 0.96|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA0: 0.80|Udenfriend : (omega + 0)- site
TWO_AA_G_S: 0.79|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_N_S: 0.75|two AA frequency -> NS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_D_S: 0.74|two AA frequency -> DS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_C_S: 0.73|two AA frequency -> CS (Eisenhaber & Eisenhaber, 1997)

Pos: 1
SelectAapCorrelation: < >
ZVEL_TINY_: 0.94|AA Property : tiny
TWO_AA_G_S: 0.87|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_S: 0.82|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
ONE_AA__S_: 0.78|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA0: 0.71|Udenfriend : (omega + 0)- site

Pos: 2
SelectAapCorrelation: < >
UDF_OMEGA2: 0.97|Udenfriend : (omega + 2)- site
TWO_AA_A_G: 0.81|two AA frequency -> AG (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_M: 0.79|two AA frequency -> AM (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_M: 0.71|two AA frequency -> GM (Eisenhaber & Eisenhaber, 1997)

Pos: 3
SelectAapCorrelation: < >
ONE_AA__V_: 0.87|single AA frequency -> V (Eisenhaber & Eisenhaber, 1997)
TWO_AA_S_V: 0.81|two AA frequency -> SV (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_V: 0.74|two AA frequency -> PV (Eisenhaber & Eisenhaber, 1997)
TWO_AA_T_V: 0.72|two AA frequency -> TV (Eisenhaber & Eisenhaber, 1997)

Pos: 4
SelectAapCorrelation: < >
TWO_AA_L_S: 0.93|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
ONE_AA__L_: 0.82|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.76|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900112: 0.72|Transmembrane regions of mt-proteins (Nakashima et al., 1990)

Pos: 5
SelectAapCorrelation: < >
TWO_AA_L_F: 0.93|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
BROC820101: 0.72|Retention coefficient in TFA (Browne et al., 1982)
NAKH900112: 0.72|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.70|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH920108: 0.70|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)

Pos: 6
SelectAapCorrelation: < >
ONE_AA__S_: 0.94|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_S: 0.77|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_H_S: 0.75|two AA frequency -> HS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_S: 0.74|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_S: 0.74|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)

Pos: 7
SelectAapCorrelation: < >
ONE_AA__S_: 0.93|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_S: 0.78|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_S: 0.78|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_S: 0.75|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
ZVEL_TINY_: 0.71|AA Property : tiny

Pos: 8
SelectAapCorrelation: < >
TANS770104: 0.90|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
ONE_AA__P_: 0.84|single AA frequency -> P (Eisenhaber & Eisenhaber, 1997)
ISOY800104: 0.82|Normalized relative frequency of bend R (Isogai et al., 1980)
CHOP780213: 0.81|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
TWO_AA_P_S: 0.79|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
LEVM760103:-0.77|Side chain angle theta(AAR) (Levitt, 1976)
RACS820114: 0.74|Value of theta(i-1) (Rackovsky-Scheraga, 1982)
ROBB760104:-0.73|Information measure for C-terminal helix (Robson-Suzuki, 1976)
TWO_AA_G_P: 0.72|two AA frequency -> GP (Eisenhaber & Eisenhaber, 1997)
TWO_AA_Q_P: 0.72|two AA frequency -> QP (Eisenhaber & Eisenhaber, 1997)

Pos: 9
SelectAapCorrelation: < >
ONE_AA__P_: 0.86|single AA frequency -> P (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_T: 0.81|two AA frequency -> PT (Eisenhaber & Eisenhaber, 1997)
FASG760103:-0.79|Optical rotation (Fasman, 1976)
LEVM760103:-0.78|Side chain angle theta(AAR) (Levitt, 1976)
ROBB760104:-0.77|Information measure for C-terminal helix (Robson-Suzuki, 1976)
TWO_AA_L_P: 0.77|two AA frequency -> LP (Eisenhaber & Eisenhaber, 1997)
ISOY800104: 0.73|Normalized relative frequency of bend R (Isogai et al., 1980)

Pos: 10
SelectAapCorrelation: < >
TWO_AA_L_V: 0.87|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ONE_AA__V_: 0.80|single AA frequency -> V (Eisenhaber & Eisenhaber, 1997)
NAKH900111: 0.73|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.72|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)

Pos: 11
SelectAapCorrelation: < >
TWO_AA_I_L: 0.89|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
ZVEL_ALI_1: 0.82|AA Property : aliphatic
NAKH920108: 0.81|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900103: 0.81|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900107: 0.80|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900111: 0.76|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
YUTK870102: 0.72|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)

Pos: 12
SelectAapCorrelation: < >
ONE_AA__L_: 0.97|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.83|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.81|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.77|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_I_L: 0.75|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_F: 0.74|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_S: 0.74|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.72|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_W: 0.70|two AA frequency -> LW (Eisenhaber & Eisenhaber, 1997)

Pos: 13
SelectAapCorrelation: < >
ONE_AA__L_: 0.97|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.87|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.86|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.85|AA composition of mt-proteins (Nakashima et al., 1990)
TWO_AA_I_L: 0.77|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.76|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_L_S: 0.73|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
NAKH900107: 0.73|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
TWO_AA_A_L: 0.72|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_F: 0.72|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)

Pos: 14
SelectAapCorrelation: < >
NAKH920105: 0.92|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
ZVEL_ALI_1: 0.89|AA Property : aliphatic
TWO_AA_I_L: 0.89|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
NAKH920108: 0.88|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900111: 0.84|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900107: 0.79|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
NAKH900103: 0.78|AA composition of mt-proteins (Nakashima et al., 1990)
ZVEL_ALI_2: 0.77|AA Property : aliphatic (changed set of AA)
COHE430101: 0.76|Partial specific volume (Cohn-Edsall, 1943)

Pos: 15
SelectAapCorrelation: < >
ONE_AA__S_: 0.93|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_S: 0.83|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_S_T: 0.75|two AA frequency -> ST (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_S: 0.73|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)

Pos: 16
SelectAapCorrelation: < >
TWO_AA_L_F: 0.96|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.77|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.77|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900105: 0.76|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.76|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900111: 0.76|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
BROC820101: 0.72|Retention coefficient in TFA (Browne et al., 1982)

Pos: 17
SelectAapCorrelation: < >
ONE_AA__L_: 0.94|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.84|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.81|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.78|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_L_F: 0.76|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900111: 0.76|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
UDF_OMEGA2: 0.74|Udenfriend : (omega + 2)- site
NAKH920108: 0.72|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)

Pos: 18
SelectAapCorrelation: < >
TWO_AA_I_L: 0.98|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.85|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900103: 0.80|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.80|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990)
ZVEL_ALI_1: 0.78|AA Property : aliphatic
NAKH900107: 0.76|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
YUTK870101: 0.76|Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987)
NAKH920108: 0.74|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
YUTK870102: 0.72|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)

Pos: 19
SelectAapCorrelation: < >
TWO_AA_L_F: 0.88|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH920108: 0.77|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900111: 0.77|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900112: 0.74|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.73|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.72|AA composition of mt-proteins (Nakashima et al., 1990)

Pos: 20
SelectAapCorrelation: < >
ONE_AA__L_: 0.97|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.81|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.77|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.77|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_I_L: 0.76|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.73|Udenfriend : (omega + 1)- site

Pos: 21
SelectAapCorrelation: < >
TWO_AA_I_L: 0.93|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920108: 0.85|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900112: 0.85|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
ZVEL_ALI_1: 0.81|AA Property : aliphatic
UDF_OMEGA1: 0.80|Udenfriend : (omega + 1)- site
NAKH900111: 0.80|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900103: 0.79|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900107: 0.79|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
YUTK870101: 0.78|Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987)

Pos: 22
SelectAapCorrelation: < >
TWO_AA_L_V: 0.93|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ONE_AA__V_: 0.78|single AA frequency -> V (Eisenhaber & Eisenhaber, 1997)
ZVEL_ALI_1: 0.76|AA Property : aliphatic
NAKH920105: 0.73|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)

Pos: 23
SelectAapCorrelation: < >
TWO_AA_G_L: 0.96|two AA frequency -> GL (Eisenhaber & Eisenhaber, 1997)

Pos: 24
SelectAapCorrelation: < >
TWO_AA_G_L: 0.86|two AA frequency -> GL (Eisenhaber & Eisenhaber, 1997)
ONE_AA__L_: 0.71|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)

Pos: 25
SelectAapCorrelation: < >
UDF_OMEGA2: 0.74|Udenfriend : (omega + 2)- site
SNEP660102: 0.71|Principal component II (Sneath, 1966)

# 
# 
# Normal termination of program main.IRIX.
# total program time: CPU 0:00:39.67 sec, elapsed time 0:00:43.00 sec
#