BLASTP 2.2.9 [May-01-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1089736229-19804-171372342727.BLASTQ4

Query= Ce_NP_497960
         (328 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples 
           1,922,832 sequences; 641,309,329 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17554898|ref|NP_497960.1|  putative nuclear protein (3F78...   556   e-157
gi|39591579|emb|CAE71155.1|  Hypothetical protein CBG18011 [...   145   1e-33
gi|31200225|ref|XP_309060.1|  ENSANGP00000019625 [Anopheles ...    38   0.25 
gi|79931|pir||S22737  glucosyltransferase (EC 2.4.1.-) S - S...    37   0.74 
gi|39589515|emb|CAE74544.1|  Hypothetical protein CBG22301 [...    35   1.9  
gi|39580526|emb|CAE66529.1|  Hypothetical protein CBG11828 [...    35   2.6  
gi|30248886|ref|NP_840956.1|  PpiC-type peptidyl-prolyl cis-...    34   3.6  
gi|17508217|ref|NP_490842.1|  SUMO, small ubiquitin-like mod...    34   4.9  
gi|49647993|emb|CAG82446.1|  unnamed protein product [Yarrow...    33   7.6  
gi|33604214|gb|AAH56283.1|  Zgc:65934 protein [Danio rerio] ...    33   9.2  

Alignments


>gi|17554898|ref|NP_497960.1| putative nuclear protein (3F783) [Caenorhabditis elegans]
 gi|7507059|pir||T24432 hypothetical protein T04A8.8 - Caenorhabditis elegans
 gi|3879349|emb|CAA84734.1| Hypothetical protein T04A8.8 [Caenorhabditis elegans]
          Length = 328

 Score =  556 bits (1433), Expect = e-157
 Identities = 298/328 (90%), Positives = 298/328 (90%)

Query: 1   MSDSDDNAYSDYLGNRRAALQKKRQPVRVCEXXXXXXXXXXXGPSPMRKKTRETQLFPXX 60
           MSDSDDNAYSDYLGNRRAALQKKRQPVRVCE           GPSPMRKKTRETQLFP  
Sbjct: 1   MSDSDDNAYSDYLGNRRAALQKKRQPVRVCESDDSDDDFDTSGPSPMRKKTRETQLFPDD 60

Query: 61  XXXXECVEVEKETYSQKVRHEIDDVEEAYRRSIYKRETVIHAPVEKNNVISGLLKICEGW 120
               ECVEVEKETYSQKVRHEIDDVEEAYRRSIYKRETVIHAPVEKNNVISGLLKICEGW
Sbjct: 61  SDDDECVEVEKETYSQKVRHEIDDVEEAYRRSIYKRETVIHAPVEKNNVISGLLKICEGW 120

Query: 121 DEAAKSGAQPEVEDVKXXXXXXXXXXXXXNFPVTVVILDCESHGNDMKSRHDIFLESTFS 180
           DEAAKSGAQPEVEDVK             NFPVTVVILDCESHGNDMKSRHDIFLESTFS
Sbjct: 121 DEAAKSGAQPEVEDVKDDSDADESSIAAENFPVTVVILDCESHGNDMKSRHDIFLESTFS 180

Query: 181 EIRRIYATKWGCPVSCVVFSHNGKTIDTYTTPQSLGWRPMTLPHPLIEASKEAGEPAEVF 240
           EIRRIYATKWGCPVSCVVFSHNGKTIDTYTTPQSLGWRPMTLPHPLIEASKEAGEPAEVF
Sbjct: 181 EIRRIYATKWGCPVSCVVFSHNGKTIDTYTTPQSLGWRPMTLPHPLIEASKEAGEPAEVF 240

Query: 241 TIENSPDSFTIKVLLASRRKPVQVEAAKDTTIQEILQKVIDAFVEDKEENIPSIESMKVV 300
           TIENSPDSFTIKVLLASRRKPVQVEAAKDTTIQEILQKVIDAFVEDKEENIPSIESMKVV
Sbjct: 241 TIENSPDSFTIKVLLASRRKPVQVEAAKDTTIQEILQKVIDAFVEDKEENIPSIESMKVV 300

Query: 301 FDNERIKDVNITCEQLDLEDDDCIEVYF 328
           FDNERIKDVNITCEQLDLEDDDCIEVYF
Sbjct: 301 FDNERIKDVNITCEQLDLEDDDCIEVYF 328



>gi|39591579|emb|CAE71155.1| Hypothetical protein CBG18011 [Caenorhabditis briggsae]
          Length = 322

 Score =  145 bits (367), Expect = 1e-33
 Identities = 109/335 (32%), Positives = 175/335 (52%), Gaps = 20/335 (5%)

Query: 1   MSDSDDNAYSDYLGNRRAALQKKRQPVRVCEXXXXXXXXXXXGPSPMRKKTRETQLFPXX 60
           MSDSDDN Y DYL +RRAA+QKKR+PV V E                + ++ E    P  
Sbjct: 1   MSDSDDNTYDDYLESRRAAIQKKRKPVAVYESDSDDDFPVKKTEPNKKMRSYE----PNG 56

Query: 61  XXXXECVEVEKETYSQKVRHEIDDVEEAYRRSIYK-RETVIHAPVEKNNVISGLLKICEG 119
               + +  E   + + +  ++D++EE YRR +   + +V+H     N+ ++  ++    
Sbjct: 57  DSDDDSIFEEVRNHDEVMTDKLDNLEEEYRRELTNSKHSVLHVQGTTNDYLTKTMEKVGA 116

Query: 120 WDEAAKSGAQPEVEDVKXXXXXXXXXXXXXNFPVTVVILDCESHGNDMKSRHDIFLESTF 179
           + E  K   Q E ED+              +  V VVI DCES  +    R D+ + STF
Sbjct: 117 FLEPEK---QIETEDI-CIDKADTSSTQKESTTVRVVINDCESRISKRNCR-DMDIHSTF 171

Query: 180 SEIRRIYATKWGCPVSCVVFSHNGKTIDTYTTPQSLGWRPMTLPHPLIEASKEAGE---- 235
           +E+R+  + KW C  + V   +NG  I    TP  LG  P  +P P  +A +E  E    
Sbjct: 172 AEVRKELSLKWMCHFNEVHLMYNGNRIGD-VTPHELGIVPFQVPLPEFDAIREEKERPSN 230

Query: 236 --PAEVFTIENSPDSFTIKVLLASRRKPVQVEAAKDTTIQEILQKVIDAFVEDKEENIPS 293
               +V TIE   D+ +IKV + +R+KP+ +   ++TT+++I++KVI++   D   +IPS
Sbjct: 231 VISPKVITIETVSDAISIKVQMKNRKKPIHLSVTEETTVEDIMKKVIESLAGDA--SIPS 288

Query: 294 IESMKVVFDNERIKDVNITCEQLDLEDDDCIEVYF 328
           +  MK +FD+E  ++   TC+ L LED DCI++Y+
Sbjct: 289 LSKMKAMFDDEYCENSQ-TCKDLGLEDADCIDIYY 322



>gi|31200225|ref|XP_309060.1| ENSANGP00000019625 [Anopheles gambiae]
 gi|21292650|gb|EAA04795.1| ENSANGP00000019625 [Anopheles gambiae str. PEST]
          Length = 199

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 179 FSEIRRIYATKWGCPVSCVVFSHNGKTIDTYTTPQSLGWRPMTLPHPLIEASKEAGEP-A 237
           F +I    A K     +C+  + + + +    TP S+ ++P       I  +K    P A
Sbjct: 55  FEDIFNQLAAKESADRACIFLNLDDRIVYASDTPDSIDYKPHQFIAGRILKTKAPILPTA 114

Query: 238 EVFTIENSPDSFTIKVLLASRRKPVQVEAAKDTTIQEILQKVIDAFVEDKEENIPSIESM 297
              +  ++ +  T+KV +  R++P++++  K+ T+  ++ K         EE     + +
Sbjct: 115 HGSSTGHNSNMITLKVQMEKRKQPLRLQIDKNQTMSVLVIKC-------AEELKCEPKDI 167

Query: 298 KVVFDNERIKDVNITCEQLDLEDDDCIEVYF 328
           ++ FD E + + N   E LDLE D+ +++ F
Sbjct: 168 RLYFDGELVGN-NDKPEDLDLEGDEILDIRF 197



>gi|79931|pir||S22737 glucosyltransferase (EC 2.4.1.-) S - Streptococcus salivarius
 gi|47528|emb|CAA77901.1| glucosyltransferase S [Streptococcus salivarius]
 gi|47531|emb|CAA77898.1| glucosyltransferase S [Streptococcus salivarius]
          Length = 1599

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 226 LIEASKEAGEPAEVFTIENSPDSFTIKVLLASRRKPVQVEAAKDTTIQEILQKVIDAFVE 285
           + +A     E  +VFTIENS  S      +  R+  V++ A K T   + L++ I+AFV+
Sbjct: 295 MTKALSNGEETKDVFTIENSQASLNAAAQILQRKIEVKIAANKST---DWLRQSIEAFVK 351

Query: 286 DKEE-NIPS 293
           D+++ NI S
Sbjct: 352 DQDKWNINS 360



>gi|39589515|emb|CAE74544.1| Hypothetical protein CBG22301 [Caenorhabditis briggsae]
 gi|39598393|emb|CAE69086.1| Hypothetical protein CBG15104 [Caenorhabditis briggsae]
          Length = 95

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 293 SIESMKVVFDNERIKDVNITCEQLDLEDDDCIEVY 327
           S+ S++ +FD  RI D + T + L++EDDD IEVY
Sbjct: 55  SVNSLRFLFDGRRINDED-TPKSLEMEDDDVIEVY 88



>gi|39580526|emb|CAE66529.1| Hypothetical protein CBG11828 [Caenorhabditis briggsae]
          Length = 55

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 293 SIESMKVVFDNERIKDVNITCEQLDLEDDDCIEVY 327
           SI S++ +FD  RI D + T + L++EDDD IEVY
Sbjct: 15  SINSLRFLFDGRRINDED-TPKTLEIEDDDVIEVY 48



>gi|30248886|ref|NP_840956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|30138503|emb|CAD84793.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 448

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 215 LGWRPM-TLPHPLIEASKEAGEPAEVFTIENSPDSFTIKVLLASRRKPVQVEAAKDTTIQ 273
           LGWRP+  L  P  E      +P EV  +  SP  F I  LL  R++  +V   + T  Q
Sbjct: 250 LGWRPLGQLGSPFTEMLVNM-QPGEVTPVVRSPVGFHILKLLERRQQEQKVTIIEQTHAQ 308

Query: 274 EILQKVIDAFVED 286
            IL KV +   E+
Sbjct: 309 HILIKVSELVSEE 321



>gi|17508217|ref|NP_490842.1| SUMO, small ubiquitin-like modifier, SUMO, small ubiquitin-like
           modifier SMO-1 (10.2 kD) (smo-1) [Caenorhabditis
           elegans]
 gi|2501447|sp|P55853|SMT3_CAEEL Ubiquitin-like protein SMT3
 gi|7446815|pir||JC5582 SMT3 protein - Caenorhabditis elegans
 gi|1707420|emb|CAA67914.1| ubiquitin-like protein [Caenorhabditis elegans]
 gi|2341095|gb|AAB67608.1| ubiquitin-like protein [Caenorhabditis elegans]
 gi|13324997|gb|AAK18969.1| Sumo (ubiquitin-related) homolog protein 1 [Caenorhabditis elegans]
          Length = 91

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 293 SIESMKVVFDNERIKDVNITCEQLDLEDDDCIEVY 327
           ++ S++ +FD  RI D + T + L++EDDD IEVY
Sbjct: 51  AVNSLRFLFDGRRINDDD-TPKTLEMEDDDVIEVY 84



>gi|49647993|emb|CAG82446.1| unnamed protein product [Yarrowia lipolytica]
          Length = 399

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 2/40 (5%)

Query: 287 KEENIPSIESMKVVFDNERIKDVNITCEQLDLEDDDCIEV 326
           KE N+P+  S+++ FD ++I D+N T EQ D+ED+D +EV
Sbjct: 359 KEMNVPAT-SVQLYFDGDKI-DLNSTIEQADVEDEDMLEV 396



>gi|33604214|gb|AAH56283.1| Zgc:65934 protein [Danio rerio]
 gi|45709326|gb|AAH67553.1| Zgc:85634 protein [Danio rerio]
          Length = 100

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 16/41 (39%), Positives = 30/41 (73%), Gaps = 2/41 (4%)

Query: 287 KEENIPSIESMKVVFDNERIKDVNITCEQLDLEDDDCIEVY 327
           + + +P + S++ +F+ +RI D N+T ++L +ED+D IEVY
Sbjct: 52  QRQGVP-VNSLRFLFEGQRITD-NLTPKELGMEDEDVIEVY 90






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
    Posted date:  Jul 13, 2004  2:03 AM
  Number of letters in database: 641,309,329
  Number of sequences in database:  1,922,832
  
Lambda     K      H
   0.315    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,641,055
Number of Sequences: 1922832
Number of extensions: 2832306
Number of successful extensions: 7201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7197
Number of HSP's gapped (non-prelim): 10
length of query: 328
length of database: 641,309,329
effective HSP length: 125
effective length of query: 203
effective length of database: 400,955,329
effective search space: 81393931787
effective search space used: 81393931787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)