BLASTP 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cg_CAGL-CDS2988.1 (369 letters) Database: Ca.fa 14,220 sequences; 5,930,730 total letters Searching.............................done Score E Sequences producing significant alignments: (bits) Value orf19.9862.prot orf20146:48628-50085:e 1458 bp, 485 aa, contig... 47 7e-06 orf19.2326.prot orf10146:48618-50075:e 1458 bp, 485 aa, contig... 47 7e-06 >orf19.9862.prot orf20146:48628-50085:e 1458 bp, 485 aa, contig 89982 bp Length = 485 Score = 47.4 bits (111), Expect = 7e-06 Identities = 67/313 (21%), Positives = 114/313 (36%), Gaps = 63/313 (20%) Query: 111 RSGMKRARTVEDENDLFFQSIAKRSQSLPVQDGS---------GAVRQDKVYYVQFISHV 161 RS + E+E+D + + K +P + + Y V+ S + Sbjct: 177 RSKIPDMEDSEEESDHELEELLKLKSQMPKSQTELSPETYTFDDESEKKRKYIVRVTSKL 236 Query: 162 DGTKGKSVQVK--ALGSHPFSKLVAAAL----SGLMRAHRLPSVMRPLYQPESVVSYW-- 213 ++++V G F K++ AA+ S LM P + R Y+PE+ W Sbjct: 237 PAVHNQTLEVDFGTKGLKTFEKILKAAVDYFKSALMSVLTPPQLSR--YRPEAASLVWVE 294 Query: 214 NRAKVLGFMTCDTLRVP--------------------------QRYGSDYLEIQLV---- 243 R V F T TLRVP + Y + ++ I Sbjct: 295 GRKLVHPFFTPKTLRVPPPAEFNPLFEKIENMKPTIIKFFLIPKEYDTTFMHIYPELQAN 354 Query: 244 -PVKEEAQYLEQEVFXXXXXXXXXXXXXXXXXXXXXXXXXXVRAPVVDLESEE-----VL 297 P+++ + +E +AP SEE + Sbjct: 355 RPIEDAIEPIEISENEFNSNESDANEEEEEEEVVAQEKQPTSKAP----SSEEPVGPNLF 410 Query: 298 RVALQGQDNKKVYVNVKPTTTFARMIEYYRTQKQLPRST----QITLALDDEPLDPHATV 353 + L+G+DNK+V V V P T +++ YY K L T + L DDE +D + TV Sbjct: 411 VIGLKGKDNKRVEVKVSPETQLRKLLSYYLRHKGLSEDTVDLSKAKLIFDDEEMDLNDTV 470 Query: 354 KSQDIEDEDMLEV 366 ++E++ ++V Sbjct: 471 GDTELEEDYEIQV 483 >orf19.2326.prot orf10146:48618-50075:e 1458 bp, 485 aa, contig 89966 bp Length = 485 Score = 47.4 bits (111), Expect = 7e-06 Identities = 67/313 (21%), Positives = 114/313 (36%), Gaps = 63/313 (20%) Query: 111 RSGMKRARTVEDENDLFFQSIAKRSQSLPVQDGS---------GAVRQDKVYYVQFISHV 161 RS + E+E+D + + K +P + + Y V+ S + Sbjct: 177 RSKIPDMEDSEEESDHELEELLKLKSQMPKSQTELSPETYTFDDESEKKRKYIVRVTSKL 236 Query: 162 DGTKGKSVQVK--ALGSHPFSKLVAAAL----SGLMRAHRLPSVMRPLYQPESVVSYW-- 213 ++++V G F K++ AA+ S LM P + R Y+PE+ W Sbjct: 237 PAVHNQTLEVDFGTKGLKTFEKILKAAVDYFKSALMSVLTPPQLSR--YRPEAASLVWVE 294 Query: 214 NRAKVLGFMTCDTLRVP--------------------------QRYGSDYLEIQLV---- 243 R V F T TLRVP + Y + ++ I Sbjct: 295 GRKLVHPFFTPKTLRVPPPAEFNPLFEKIENMKPTIIKFFLIPKEYDTTFMHIYPELQAN 354 Query: 244 -PVKEEAQYLEQEVFXXXXXXXXXXXXXXXXXXXXXXXXXXVRAPVVDLESEE-----VL 297 P+++ + +E +AP SEE + Sbjct: 355 RPIEDAIEPIEISENEFNSNESDANEEEEEEEVVAQEKQPTSKAP----SSEEPVGPNLF 410 Query: 298 RVALQGQDNKKVYVNVKPTTTFARMIEYYRTQKQLPRST----QITLALDDEPLDPHATV 353 + L+G+DNK+V V V P T +++ YY K L T + L DDE +D + TV Sbjct: 411 VIGLKGKDNKRVEVKVSPETQLRKLLSYYLRHKGLSEDTVDLSKAKLIFDDEEMDLNDTV 470 Query: 354 KSQDIEDEDMLEV 366 ++E++ ++V Sbjct: 471 GDTELEEDYEIQV 483 Database: Ca.fa Posted date: Jul 8, 2004 10:00 PM Number of letters in database: 5,930,730 Number of sequences in database: 14,220 Lambda K H 0.315 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,258,975 Number of Sequences: 14220 Number of extensions: 115875 Number of successful extensions: 298 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 294 Number of HSP's gapped (non-prelim): 4 length of query: 369 length of database: 5,930,730 effective HSP length: 96 effective length of query: 273 effective length of database: 4,565,610 effective search space: 1246411530 effective search space used: 1246411530 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.9 bits)