Sequences with E-value BETTER than threshold (0.002) 447 e-124
443 e-123
436 e-121
343 3e-93
307 2e-82
296 3e-79
253 4e-66
231 9e-60
226 3e-58
Sequences with E-value WORSE than threshold gb|AAD54698.1| (AF118772) ORF5 [Equine arteritis virus] 33 8.4
Alignments
>ref|NP_002633.1| (NM_002642) phosphatidylinositol glycan, class C [Homo sapiens]
ref|XP_002139.1| (XM_002139) phosphatidylinositol glycan, class C [Homo sapiens]
sp|Q92535|PIGC_HUMAN PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS, CLASS C PROTEIN (PIG-C)
pir||JC4969 pig-c protein - human
dbj|BAA12812.1| (D85418) phosphatidylinositol-glycan-class C (PIG-C) [Homo sapiens]
emb|CAB10071.1| (Z97195) PHOSPHATIDYLINISITOL-GLYCAN class C (PIG-C) [Homo sapiens]
gb|AAH06539.1|AAH06539 (BC006539) phosphatidylinositol glycan, class C [Homo sapiens]
Length = 297
Score = 447 bits (1139), Expect = e-124
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ 60
MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ
Sbjct: 1 MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ 60
Query: 61 QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL 120
QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL
Sbjct: 61 QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL 120
Query: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN
Sbjct: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
Query: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV
Sbjct: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
Query: 241 GGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLSRFLS 297
GGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLSRFLS
Sbjct: 241 GGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLSRFLS 297
>dbj|BAA22866.1| (AB000360) PIGC [Homo sapiens]
Length = 297
Score = 443 bits (1129), Expect = e-123
Identities = 296/297 (99%), Positives = 296/297 (99%)
Query: 1 MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ 60
MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ
Sbjct: 1 MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ 60
Query: 61 QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL 120
QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL
Sbjct: 61 QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL 120
Query: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN
Sbjct: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
Query: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV
Sbjct: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
Query: 241 GGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLSRFLS 297
GGLLSISAVGAVLFALLLMSISCLC FYLIRLQLFKENIHGPWDEAEIKEDLSRFLS
Sbjct: 241 GGLLSISAVGAVLFALLLMSISCLCSFYLIRLQLFKENIHGPWDEAEIKEDLSRFLS 297
>dbj|BAB29152.1| (AK014096) data source:SPTR, source key:Q92535,
evidence:ISS~homolog to PHOSPHATIDYLINOSITOL-GLYCAN
BIOSYNTHESIS, CLASS C PROTEIN (PIG-C)~putative [Mus
musculus]
gb|AAH06938.1|AAH06938 (BC006938) RIKEN cDNA 3110030E07 gene [Mus musculus]
Length = 297
Score = 436 bits (1110), Expect = e-121
Identities = 278/297 (93%), Positives = 287/297 (96%)
Query: 1 MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ 60
M AQ VT+T EVKWQKVLYERQPFPDNYVD+RFLEELRKNI+ARKYQYWAVVFESSVVIQ
Sbjct: 1 MCAQRVTDTPEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQ 60
Query: 61 QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL 120
QLCSVCVFVVIWWYMDEGLLAP WL GTGLASSL+GYVLFDLIDGG+GRKKSG+TRWADL
Sbjct: 61 QLCSVCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADL 120
Query: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
KS LVFITFTYGFSPVLKTLTESVSTDTIYAM+VFMLLGHLIFFDYGANAAIVSSTLSLN
Sbjct: 121 KSTLVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLN 180
Query: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKA TPRSYVGVTLLFAFSA
Sbjct: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAF 240
Query: 241 GGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLSRFLS 297
GGLLSISAVGA+LFALLL SISCLCP+YLI LQLFKENIHGPWDEAEIKEDLSRFLS
Sbjct: 241 GGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS 297
>pir||T41379 probable phosphatidylinositol- glycan-class c protein - fission
yeast (Schizosaccharomyces pombe)
emb|CAA19108.1| (AL023592) phosphatidylinositol-glycan-class c [Schizosaccharomyces
pombe]
Length = 324
Score = 343 bits (871), Expect = 3e-93
Identities = 89/281 (31%), Positives = 161/281 (56%), Gaps = 5/281 (1%)
Query: 11 EVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVV 70
+ W+KVL+ +Q +PDN++D FL L++N++ + +W++V +S V Q L SV +F
Sbjct: 35 KKPWKKVLWRKQDYPDNFIDESFLNGLQRNVNIQVTDFWSLVADSLPVSQHLSSVVIFAS 94
Query: 71 IWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADLKSALVFITFT 130
++ + L+ + S++ ++L+D + ++ +KS ++ +
Sbjct: 95 VFVSIYRNQLSCALVGFVSNVSAVAAFILWDFVLRKPCNNRTFPNYMGIVKSCILIVLTL 154
Query: 131 YGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANA----AIVSSTLSLNMAIFAS 186
G SP+L +LT+S S D+++A++V++ L ++ F +Y + ++LS N A+ AS
Sbjct: 155 AGLSPILMSLTKSTSPDSVWAIAVWLFLANVFFHEYTTETIRPHVRLHNSLSTNAALSAS 214
Query: 187 VCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVGGLLSI 246
V LASRL +S++ F + FA+ FAL+P+ +K + + + + +TL+ SA L ++
Sbjct: 215 VVLASRLEKSINVFFFILFAVHWFALFPIFRKYIHVFSFYADMLMTLVLIISAYIALNAV 274
Query: 247 -SAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEA 286
S V A +F L+ IS +CP + I+LQ FK IHGPWD A
Sbjct: 275 ASVVIAFVFLSLIFFISFICPIWFIKLQRFKNEIHGPWDIA 315
>gb|AAF47758.1| (AE003477) CG12077 gene product [Drosophila melanogaster]
Length = 256
Score = 307 bits (779), Expect = 2e-82
Identities = 88/283 (31%), Positives = 139/283 (49%), Gaps = 42/283 (14%)
Query: 9 TKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVF 68
+K W K LY + +PDNY D FL++LR N+H R Y + + +V+ Q+ + F
Sbjct: 7 SKRQPWVKNLYSNREYPDNYTDASFLKDLRTNLHCRIYTFGEAIAGITVLNNQISCITGF 66
Query: 69 VVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADLKSALVFIT 128
++++ M ++P +L + IGY+ + GR S D K+ + +
Sbjct: 67 LILYQLMLSDSVSPTTILVPSCGITGIGYLCY------RGRSLSWALLGEDSKTLVTVVL 120
Query: 129 FTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVC 188
F Y FSP+L TLT+++STDTIY M+ F+LLG+LIF YG + A+VS A+V
Sbjct: 121 FGYLFSPMLHTLTQAISTDTIYTMTFFVLLGNLIFGHYGLDVAMVSK---------AAVF 171
Query: 189 LASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVGGLLSISA 248
F L+P++ + + +FA + L IS
Sbjct: 172 ---------------------FVLYPIMTEANWHAGF-----MLPIFAICCM-ALYCISR 204
Query: 249 VGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKED 291
L+A + I+ +CPF + Q +K NIHGPWDEA ++E+
Sbjct: 205 PVLYLYASTTIFINFVCPFIFVWQQQYKFNIHGPWDEAIVEEN 247
>ref|NP_501645.1| (NM_069244) T20D3.8.p [Caenorhabditis elegans]
pir||T25032 hypothetical protein T20D3.8 - Caenorhabditis elegans
emb|CAA92490.2| (Z68220) cDNA EST yk416d12.3 comes from this gene~cDNA EST
yk416d12.5 comes from this gene~cDNA EST yk586b10.3
comes from this gene~cDNA EST yk586b10.5 comes from this
gene [Caenorhabditis elegans]
Length = 282
Score = 296 bits (752), Expect = 3e-79
Identities = 86/280 (30%), Positives = 139/280 (48%), Gaps = 18/280 (6%)
Query: 14 WQKVLYERQPFPDNYV--DRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVVI 71
WQK+LY +QPFPDNY D +FL+ELRKN+ Y Y + VF + L + ++ V+
Sbjct: 7 WQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITMYFVL 66
Query: 72 WWYMDEGLLAPHW---LLGTGLASSLIGYVLF--DLIDGGEGRKKSGQTRWADLKSALVF 126
+ +L +W +L + + +++ Y+ F LI K+ +T
Sbjct: 67 FL----NILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKEHART-------IFTL 115
Query: 127 ITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFAS 186
F Y F+PV++TLT S+STDTIY+ S+ + F DYG A +VS S++ + ++
Sbjct: 116 FIFAYAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSA 175
Query: 187 VCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVGGLLSI 246
+ L SRL +++ A + A + ++ P + + ++ +
Sbjct: 176 IFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDF 235
Query: 247 SAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEA 286
S ++ FALL + I +CP LI Q K IHGPWDEA
Sbjct: 236 SLELSICFALLHIFILFICPLILILKQTGKCTIHGPWDEA 275
>ref|NP_181043.1| (NM_129050) putative phosphatidylinositol-glycan synthase
[Arabidopsis thaliana]
pir||T00479 hypothetical protein F19I3.21 - Arabidopsis thaliana
gb|AAC12837.1| (AC004238) putative phosphatidylinositol-glycan synthase
[Arabidopsis thaliana]
Length = 303
Score = 253 bits (640), Expect = 4e-66
Identities = 98/296 (33%), Positives = 163/296 (54%), Gaps = 22/296 (7%)
Query: 13 KWQKVLY--ERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVV 70
KW+KV Y + + DNY D FLEE+ N + + V+ +S + Q LC V + V+
Sbjct: 14 KWRKVAYGGMQIGYDDNYTDESFLEEMVMNANVVRRDLLKVMKDSVSISQYLCIVALVVL 73
Query: 71 IWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADLKSALVFITFT 130
+W + E L + LL L+ G+++ L E + S L + F T
Sbjct: 74 VWVHTLESSLDENSLLLLDLSLLASGFLILLLT---EEKMLSLSLLLRYLVNISFFTTGL 130
Query: 131 YGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGA---------NAAIVSSTLSLNM 181
Y +P+ +TLT S+S+D+I+A++V +LL HL DY ++S +S+N
Sbjct: 131 YILAPIYQTLTRSISSDSIWAVTVSLLLLHLFLHDYSGSTIRAPGALKTPNLTSCISVNA 190
Query: 182 AIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVG 241
+I ASV +ASRLP LH F ++ F++Q+F P+ + C + G+ LLF+F+ +G
Sbjct: 191 SIVASVFVASRLPSRLHVFAVMLFSLQVFLFAPL----VTYCIKKFNFGLHLLFSFALMG 246
Query: 242 -GLLSISAV---GAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLS 293
L SI A+ ++F L++ ++ +CP++LIR+Q +K I+GPWDEA++ D++
Sbjct: 247 LTLYSIYALHRLFFLVFLSLVLLVNVVCPYWLIRMQEYKFEINGPWDEAKLCFDIT 302
>ref|NP_015249.1| (NC_001148) Required for synthesis of
N-acetylglucoaminylphosphatidylinositol, the first
intermediate in synthesis of
glycosylphosphatidylinositol (GPI) anchors; Gpi2p
[Saccharomyces cerevisiae]
sp|P46961|GPI2_YEAST N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN GPI2
pir||S61111 GPI2 protein - yeast (Saccharomyces cerevisiae)
dbj|BAA06128.1| (D29645) Gcr4p [Saccharomyces cerevisiae]
gb|AAB68262.1| (U41849) Gpi2p [Saccharomyces cerevisiae]
Length = 280
Score = 231 bits (585), Expect = 9e-60
Identities = 51/274 (18%), Positives = 105/274 (37%), Gaps = 35/274 (12%)
Query: 11 EVKWQKVLYERQPFPDNYVDRRF--LEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVF 68
W+++L+ +Q +PDNY D F L +K +K + +
Sbjct: 3 RSPWKRLLWLKQEYPDNYTDPSFIELRARQKAESNQKSDRKLSEAARAQIR--------- 53
Query: 69 VVIWWYMDEGLLAPHWLLGTGLASSLIGY------VLFDLIDGGEGRKKSGQTRWA--DL 120
+ + + +L ++ T G+ + I R K + D+
Sbjct: 54 -LDFISFYQTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSSFMDV 112
Query: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
KS+L+ SPVLK+L+++ ++D+I+ +S ++ L ++ + S LS N
Sbjct: 113 KSSLIITFAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFVIS-STKSKDKPSNLSTN 171
Query: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
+ + L+SRL ++ F + IQ+ + P V ++ S +
Sbjct: 172 ILVALVAVLSSRLSTTIDVFCFLLICIQLNIILPT----------YLSVTNKVVPIISNI 221
Query: 241 GGLLSISAVGAVLFALLLMSISC----LCPFYLI 270
++ ++ LL+ S + P + I
Sbjct: 222 IVYSFLNVALGWIYMLLIFFASVFYITVLPKWFI 255
>gb|AAA79518.1| (U23788) Gpi2p [Saccharomyces cerevisiae]
Length = 268
Score = 226 bits (573), Expect = 3e-58
Identities = 53/262 (20%), Positives = 102/262 (38%), Gaps = 27/262 (10%)
Query: 11 EVKWQKVLYERQPFPDNYVDRRF--LEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVF 68
W+++L+ +Q +PDNY D F L +K +K + +
Sbjct: 3 RSPWKRLLWLKQEYPDNYTDPSFIELRARQKAESNQKSDRKLSEARRAQIR--------- 53
Query: 69 VVIWWYMDEGLLAPHWLLGTGLASSLIGY------VLFDLIDGGEGRKKSGQTRWA--DL 120
+ + + +L ++ T G+ + I R K + D+
Sbjct: 54 -LDFISFYQTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSSFMDV 112
Query: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
KS+L+ SPVLK+L+++ ++D+I+ +S ++ L ++ + S LS N
Sbjct: 113 KSSLIITFAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFVIS-STKSKDKPSNLSTN 171
Query: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
+ + L+SRL ++ F + IQ+ + P P + F A+
Sbjct: 172 ILVALVAVLSSRLSTTIDVFCFLLICIQLNIILPTYLSVTNKVVPIISNIIVYSFLNVAL 231
Query: 241 GGLLSISAVGAVLFALLLMSIS 262
G + +LF+LL I
Sbjct: 232 GWIY------MLLFSLLQYFIL 247
Score = 96.1 bits (237), Expect = 7e-19
Identities = 26/150 (17%), Positives = 51/150 (33%), Gaps = 49/150 (32%)
Query: 116 RWA------------------------------------------------DLKSALVFI 127
D+KS+L+
Sbjct: 60 YQTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSSFMDVKSSLIIT 119
Query: 128 TFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASV 187
SPVLK+L+++ ++D+I+ +S ++ L ++ + S LS N+ +
Sbjct: 120 FAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFVIS-STKSKDKPSNLSTNILVALVA 178
Query: 188 CLASRLPRSLHAFIMVTFAIQIFALWPMLQ 217
L+SRL ++ F + IQ+ + P
Sbjct: 179 VLSSRLSTTIDVFCFLLICIQLNIILPTYL 208
>gb|AAD54698.1| (AF118772) ORF5 [Equine arteritis virus]
Length = 255
Score = 32.6 bits (74), Expect = 8.4
Identities = 29/176 (16%), Positives = 62/176 (34%), Gaps = 15/176 (8%)
Query: 126 FITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFD-----YGANAAIVSSTLSLN 180
F V+ L +Y S + +F D +G + + ++ ++
Sbjct: 31 FTLCMLTDRGVIANLLRYDEHTALYNCSASKTCWYCVFLDEQIITFGTDCND-TYSVPVS 89
Query: 181 MAIFASVCLASRLPRSLHAFI-----MVTFAIQIFALWPMLQKKLKACTPRSYVGV-TLL 234
+ + S L + FI F + +F +P+L + P + + + +
Sbjct: 90 TVLEQAQWPYSVLFDDMPPFIYYGREFGIFVMDVFMFYPVLVLFFLSVLPYATLILEMCV 149
Query: 235 FAFSAVGGLLSISAVGAVLFALLLMSISCLC---PFYLIRLQLFKENIHGPWDEAE 287
V GL S + + +FA L+ S + +L ++ +H + AE
Sbjct: 150 SILFVVYGLYSGAYLAMGIFATTLVVHSVVVLRQLLWLCLAWRYRCTLHASFISAE 205
CPU time: 95.09 user secs. 2.12 sys. secs 97.21 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.319 0.177 0.511
Gapped
Lambda K H
0.270 0.0620 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191229907
Number of Sequences: 887402
Number of extensions: 9077624
Number of successful extensions: 48028
Number of sequences better than 10.0: 610
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 601
Number of HSP's that attempted gapping in prelim test: 47388
Number of HSP's gapped (non-prelim): 993
length of query: 297
length of database: 277,845,442
effective HSP length: 52
effective length of query: 245
effective length of database: 231,700,538
effective search space: 56766631810
effective search space used: 56766631810
T: 11
A: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.9 bits)
S2: 73 (32.4 bits)
