AA bar SignalP LCR TM
IMP IMP-Bioinformatics TEM at IMP-Bioinformatics
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Tumor Endothelial Marker Report: TEM46 (Peanut-like 1)

TEM domain structure

site-guide


TEM Sequence Analysis
name from to source/E description
GTP_CDC 41 321 Pfam, E = 1.4e-185 Contains a P-loop nucleotide-binding consensus sequence (SCOP).
369        

Remarks



Sequence Information
TEM TEM46
Reliability of Gen2Tag mapping
Cid->tag (Hs.3847) frequency:
tem46: CATG-ATCCCTTCCCG=5/6 (cDNA)
tem46: CATG-ATCCCTTCCCG=12/12 (EST oriented)
Analysis
  • BlastP against nr

  • Output Created by a Suite of Single Sequence Analysis Techniques
  • Protein Description
    SEQ.SOURCE: sp|Q99719|PNL1_HUMAN PEANUT-LIKE PROTEIN 1
    Protein Sequence
    MSTGLRYKSKLATPEDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDL
    YKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFR
    DESGLNRKNIQDNRVHCCLYFISPFGHGLRPVDVGFMKALHEKVNIVPLIAKADCLVPSEIRKLKERIR
    EEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVIGSNTVVEAKGQRVRGRLYPWGIVEVENQA
    HCDFVKLRNMLIRTHMHDLKDVTCDVHYENYRAHCIQQMTSKLTQDSRMESPIPILPLPTPDAETEKLI
    RMKDEELRRMQEMLQRMKQQMQDQ
    SAGE-Tag CATG-ATCCCTTCCCG
    EST/cluster Description
    UNIGEN CLUSTER: Hs.3847 : peanut (Drosophila)-like 1
    SEQ.SOURCE: gi|9945438|ref|NM_002688.2| Homo peanut (Drosophila)-like 1 (PNUTL1)
    REMARKS: Known transcripts of the gene: a major one of 2.2 kb and a minor one of 3.5 kb.
    EST/cluster Sequence
    CACCCCGCAGCCCGGCCTCGGCCTCCGCCGCTTGTTGTCGCGCCCCGCCCGCGAGCCCGCCCCGCACGTC
    CCCCGCCGGCGGCCACCATGAGCACAGGCCTGCGGTACAAGAGCAAGCTGGCGACCCCAGAGGACAAGCA
    GGACATTGACAAGCAGTACGTGGGCTTCGCCACACTGCCCAACCAGGTGCACCGCAAGTCGGTGAAGAAA
    GGCTTTGACTTCACACTCATGGTGGCTGGTGAGTCAGGCCTGGGGAAGTCCACACTGGTCCACAGCCTCT
    TCCTGACAGACTTGTACAAGGACCGGAAGCTGCTCAGTGCTGAGGAGCGCATCAGCCAGACGGTAGAGAT
    TCTAAAACACACGGTGGACATTGAGGAGAAGGGAGTCAAGCTGAAGCTCACCATCGTGGACACGCCGGGA
    TTCGGGGACGCTGTCAACAACACCGAGTGCTGGAAGCCCATCACCGACTATGTGGACCAGCAGTTTGAGC
    AGTACTTCCGTGATGAGAGCGGCCTCAACCGAAAGAACATCCAAGACAACCGAGTGCACTGCTGCCTATA
    CTTCATCTCCCCCTTCGGGCATGGGCTGCGGCCAGTGGATGTGGGTTTCATGAAGGCATTGCATGAGAAG
    GTCAACATCGTGCCTCTCATCGCCAAAGCTGACTGTCTTGTCCCCAGTGAGATCCGGAAGCTGAAGGAGC
    GGATCCGGGAGGAGATTGACAAGTTTGGGATCCATGTATACCAGTTCCCTGAGTGTGACTCGGACGAGGA
    TGAGGACTTCAAGCAGCAGGACCGGGAACTGAAGGAGAGCGCGCCCTTCGCCGTTATAGGCAGCAACACG
    GTGGTGGAGGCCAAGGGGCAGCGGGTCCGGGGCCGACTGTACCCCTGGGGGATCGTGGAGGTGGAGAACC
    AGGCGCATTGCGACTTCGTGAAGCTGCGCAACATGCTCATCCGCACGCATATGCACGACCTCAAGGACGT
    GACGTGCGACGTGCACTACGAGAACTACCGCGCGCACTGCATCCAGCAGATGACCAGCAAACTGACCCAG
    GACAGCCGCATGGAGAGCCCCATCCCGATCCTGCCGCTGCCCACCCCGGACGCCGAGACTGAGAAGCTTA
    TCAGGATGAAGGATGAGGAACTGAGGCGCATGCAGGAGATGCTGCAGAGGATGAAGCAGCAGATGCAGGA
    CCAGTGACGCTCGCCGCGGACACACCGTCCGTCTCCGGGACGCCCTCGCACCCCTGGACACCAGACCGGA
    CTGTTCCCGACCCGGAGACGCGGGGCCACAGCCCCCAGCTGACCCTAATTTATTCTCAGCACCACCCCCT
    CCCAGGTCATTGTGTCTGTTTCCGAGGGGCCTGGACCGTAGCCCCCGCCCAGCTGGCCCTCTCTGACCTT
    GGGGGATCAGGAGCGAAGTTGGGCGGGACTTCAGAGATCCGCCTCCCTTGCCCTTCCCCCGCCCCCGGAC
    GGTCACAGCACCCAAACCGCAGGCCCTGCTCTGGCAGGCAGGCAAAGCTAGGCAGAAGAGGATTCCCAGG
    ATCCTGGGTCTGTTCCCTGCCCCAGTGCTGCAGAACGGACTTGGGAGCCCTCCTTTGCCTGCTCCCGCGG
    GTCACCCAGCGAGTGCTGAGACCCCATTTTCTGTCGAGGCGGGCCGAGTCTTCCCTTATCCCCAGACGCC
    TAGCGGGCAGGGTTGGGCTGAATCAAATGGGAGCCCTCCAGACATAAGGAGGCCAGAGGCTGCAAGGAGC
    GGGGTCGTGACCGCTTACACCCCTTCTCCACAGCCCGGCCCGACCTGGAGGGCCCCCGGGGCACTGGGCG
    GTGAGCCACCTCCTGGCAACTCTCGGTGCCGTCCCCTGCCCTCGCTCGAGGCCTCTTCTCCCCAGCACCG
    CTGTGGTGTGCCGGGATCCTGAGCCTAGGCCTCCCGATGTTCCCACCCGCATGATCCCTTCCCGCCACAC
    GATGCTCCGTTTTCTTCCGTTGTGAATGCCGCGTCCTGTCCTGGTGACAGGAGAACAATGTTGGTGAACG
    TCAAAAAAAAAAAAAAAA
    Genomic Sequence Description  
    Genomic Sequence
    
          


    Literature

    PubMed: 9022087 Alternative expression of platelet glycoprotein Ib(beta) mRNA from an adjacent 5 gene with an imperfect polyadenylation signal sequence.
    Zieger B, Hashimoto Y, Ware J.
    J Clin Invest 1997 Feb 1;99(3):520-5.
    PubMed: 10321247 The septin CDCrel-1 binds syntaxin and inhibits exocytosis.
    Beites CL, Xie H, Bowser R, Trimble WS.
    Nat Neurosci. 1999 May;2(5):434-9.
    PubMed: 9611266 Structure and expression of the human septin gene HCDCREL-1.
    Yagi M, Zieger B, Roth GJ, Ware J.
    Gene 1998 Jun 8;212(2):229-36.


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