AA bar SignalP LCR TM
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Tumor Endothelial Marker Report: TEM45 (no convincing assignment: tropomyosin 1)

TEM domain structure

site-guide


TEM Sequence Analysis
name from to source/E description
Tropomyosin 48 284 Pfam, E = 1e-46 Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites
284        

Remarks



Sequence Information
TEM TEM45
Reliability of Gen2Tag mapping
Cid->tag (Hs.77899) frequency:
tem45: CATG-GGCTTGCCT=6/29 (EST oriented, 5labeled)
     : CATG-TTAAAGATT=45/72 (EST unoriented, 5labeled)
tem45: CATG-GGCTTGCCT=2/184 (EST oriented)
     : CATG-TTAAAGATT=143/184 (EST oriented)
Analysis
  • Output Created by a Suite of Single Sequence Analysis Techniques
  • Protein Description
    SEQ.SOURCE: gi|339944|gb|AAA36771.1| tropomyosin
    Protein Sequence
    MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEK
    LELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEK
    MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAA
    EDKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLE
    LNNM
    SAGE-Tag CATG-GGCTTGCCTTT
    EST/cluster Description
    UNIGEN CLUSTER: Hs.77899 : tropomyosin 1 (alpha)
    SEQ.SOURCE:gb|M19267.1|HUMTRO Human tropomyosin mRNA
    MARKINGS: tem45 Tag in red
    first Poly-A-signal following the Tag in bold
    REMARKS: The sequence of the tag is incorrect in the published mRNA
    Proof: BlastN of 1261 to 1330 against human EST
    EST/cluster Sequence
    CAGAATCTCCGGCAGTTTTTGTACCTCAAGAAGTAAGTGGAACACCTTTCCCTGTCATAGTTATTTTCAT
    CCAGACATCTGGTGGAAGCATCAGATTCCTTACAGATATAAGAGAGGCATCATTTAAAAGGTAGAACAGG
    ATCGACAAACAAGGATTTATGTCAGGATCTCTCAGCCTCTGTGTTACCGAGGGCATTTCTAACAGTCTTC
    TTACTACGGCCTCCGCCGACCGCGCGCTCGCCCCGCCGCTCCTGCTGCAGCCCCAGGGCCCCTCGCCGCC
    GCCACCATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAGCTCGACAAGGAGAACGCCTTGGATCGAG
    CTGAGCAGGCGGAGGCCGACAAGAAGGCGGCGGAAGACAGGAGCAAGCAGCTGGAAGATGAGCTGGTGTC
    ACTGCAAAAGAAACTCAAGGGCACCGAAGATGAACTGGACAAATACTCTGAGGCTCTCAAAGATGCCCAG
    GAGAAGCTGGAGCTGGCAGAGAAAAAGGCCACCGATGCTGAAGCCGACGTAGCTTCTCTGAACAGACGCA
    TCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGTCTGGCAACAGCTTTGCAGAAGCTGGAGGA
    AGCTGAGAAGGCAGCAGATGAGAGTGAGAGAGGCATGAAAGTCATTGAGAGTCGAGCCCAAAAAGATGAA
    GAAAAAATGGAAATTCAGGAGATCCAACTGAAAGAGGCAAAGCACATTGCTGAAGATGCCGACCGCAAAT
    ATGAAGAGGTGGCCCGTAAGCTGGTCATCATTGAGAGCGACCTGGAACGTGCAGAGGAGCGGGCTGAGCT
    CTCAGAAGGCCAAGTCCGACAGCTGGAAGAACAATTAAGAATAATGGATCAGACCTTGAAAGCATTAATG
    GCTGCAGAGGATAAGTACTCGCAGAAGGAAGACAGATATGAGGAAGAGATCAAGGTCCTTTCCGACAAGC
    TGAAGGAGGCTGAGACTCGGGCTGAGTTTGCGGAGAGGTCAGTAACTAAATTGGAGAAAAGCATTGATGA
    CTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAACCTTAGTATGCATCAGATGCTGGATCAGACTTTA
    CTGGAGTTAAACAACATGTGAAAACCTCCTTAGCTGCGACCACATTCTTTCATTTTGTTTTGTTTTGTTT
    TGTTTTTAAACACCTGCTTACCCCTTAAATGCAATTTATTTACTTTTACCACTGTCACAGAAACATCCAC
    AAGATACCAGCTAGGTCAGGGGGTGGGGAAAACACATACAAAAAGCAAGCCCATGTCAGGGCGATCCTGG
    TTCAAATGTGCCATTTCCCGGGTTGATGCTGCCACACTTTGTAGAGAGTTTAGCAACACAGTGTGCTTAG
    TCAGCGTAGGAATCCTCACTAAAGCAGGAGAAGTTCCATTCAAAGTGCCAATGATAGAGTCAACAAGGAA
    GGTTAATGTTGGAAACACAATCAGGTGTGGATTGGTGCTACTTTGAACAAAAGGTCCCCCTGTGGTCTTT
    TGTTCAACATTGTACAATGTAGAACTCTGTCCAACACTAATTTATTTTGTCTTGAGTTTTACTACAAGAT
    GAGACTATGGATCCCGCATGCCT
    Genomic Sequence Description  
    Genomic Sequence
     


    Literature

    PubMed: 7943254 Hypoxia induces the synthesis of tropomyosin in cultured porcine pulmonary artery endothelial cells.
    Rao UJ, Denslow ND, Block ER
    Am J Physiol 1994 Sep;267(3 Pt 1):L271-81


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