analysis of sequence from tem12 ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ >tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVREFLYDVVKSLA VGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGD GVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSLHDIV GNLVSCVHSSVSPERAGDTETLKDITAQDSADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIR VGVVQFSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVL VLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIV GVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYA DTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGK SLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGT PEVHSNKRDIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS DILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAG ILTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILF LFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKT GKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADP AELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEF VQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNIL VSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPT FRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVD YLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGS RIEEGVPQFLVLISSGKSDDEVVVPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSL EQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGP SKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGV PQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIM NSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGL VQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVI TGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAM HETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVV ANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLA DLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACC GVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPK GETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPG LIGEQGISGPRGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDGVGSEGRRGKK GERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGDSIDQCALI QSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY NNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPT RASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDI CNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQH FARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESA PNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNP VTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPAT AAKPVAAKPAAVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEITENSAKLHWER PEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQP PPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENK FGSQKECEKVCAPVLAKPGVISVMGT ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ sec.str. with predator Info> Identical 7-residue fragments found in: Info> 1knt.brk - > tem12gi|3127926|emb|CAA36267.1| . . . . . 1 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTI 50 __________EEEE_________HHHHHHHHH_______EEEEE____EE . . . . . 51 GEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQ 100 EHHHHHHHHHHHHHHHHHH_______EEEEEE__________HHHHHHHH . . . . . 101 EVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLT 150 HHHHH_______________EEEEEEHHHHHHHHH________EEEEEEE . . . . . 151 DGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNL 200 ___________HHHHHH___EEEE_________HHHHHH_____EEEEEE . . . . . 201 ENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDSADIIFLIDGS 250 __EEE_EEEEEEEEEEEE___________HHHHHHH_____EEEEEEE__ . . . . . 251 NNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS 300 ____EEEEEEHHHHHHHHHHH______EEEEEEEE______EEEE_____ . . . . . 301 TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVL 350 HHHHHHHHHHH____________HHHHHH__________________EEE . . . . . 351 VLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVF 400 EEEE_________HHHHHHHEEEEEE____HHHHHHHHHHHHH____EEE . . . . . 401 TVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLV 450 EE_______HHHHH____EEEEE_EEEEE____EEEEEEE____EEEEEE . . . . . 451 DGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFN 500 __________HHHHHHHHHHHHHHHHHH_HHHHHHHHHHHHH____EEE_ . . . . . 501 THPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIP 550 _____HHHHHHHHH_______EEE____HHHHHH________________ . . . . . 551 KLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS 600 _EEEEE____________HHHHHHHHHEEEE_______HHHHHHHHHH_E . . . . . 601 LVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANV 650 EEEEE__EEEE________EEEEEEEE___________EEEEEE______ . . . . . 651 GKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS 700 ________HHHHHHHHH________EEEEEEEE_________________ . . . . . 701 DILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLL 750 __HHHHHHHHHH__________EEEEEE_________EEE__HHHHHHHH . . . . . 751 TAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMD 800 H______HHHHHHHHHHHHH_EEEE____HHHHHHHHHHH____EEEEE_ . . . . . 801 DFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVG 850 _________EEEEE_EEEEE____EEEE________EEEEEE______EE . . . . . 851 QFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL 900 E___HHHHHHHHHHH_________EEEEE__________________HHH . . . . . 901 NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAG 950 HHHHHHHHH_____HHHHHHHHHHHHEEEE________HHHHHHHHHHH_ . . . . . 951 RSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLP 1000 __________________EEEE_________HHHHHH___HHHHHHH___ . . . . . 1001 KIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEF 1050 ______HHHHHHHHHH___________EEEEEEE_________HHHHHHH . . . . . 1051 VQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTL 1100 HHHHHHH_______EEEEEEEEE______EEE______HHHHHHHHHHHH . . . . . 1101 LGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRN 1150 ________HHHHHHHHHHHH______________EEEEEE__________ . . . . . 1151 PSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV 1200 __EEEE____EEEEEE_____HHHHHHH_____EEEEE______HHHHHH . . . . . 1201 ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQY 1250 HHHHHHHHHHHHHHHHH______________EEEEEEE_________HHH . . . . . 1251 VRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQ 1300 HHHHHHHHHHEEE_____EEEEEEEE_____HHHHH_____HHHHHHHHH . . . . . 1301 RLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD 1350 HHH_____EEE_______HHHHHH_____________EEEEEE_______ . . . . . 1351 EVVVPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSL 1400 EEEEEEEEEEE_____EEEE____HHHHHHHH_____EEEEE____HHHH . . . . . 1401 EQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPD 1450 HHHH_______HHHHHHHHHHH______________EEEEE_________ . . . . . 1451 GFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL 1500 ___HHHHHHHHHHEEE______EEEEEE________EEEEEE____HHHH . . . . . 1501 DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGG 1550 HHHHHHHHH_________EEEEHHHHHHH_____________EEEEEE__ . . . . . 1551 KSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFR 1600 _____HHHHHHHHH____EEE___________EEE_______HHHHHHHH . . . . . 1601 ELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINF 1650 ____HHHHHHH___________________________EEEEEE______ . . . . . 1651 RRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKR 1700 ____HHHHHHHHHHHHHH_______EEEEEEEEE_____EEEE____HHH . . . . . 1701 QIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVI 1750 HHHHHHHHEEE_______EEEEEEEEEEEE_______________EEEEE . . . . . 1751 TGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG 1800 E____HHHHHHHHHHHHH____EEEEEEE______EEEEE___HHHHH__ . . . . . 1801 NVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQN 1850 ___HHHHHHHHHHHHHHHHHHHH_______HHHHHHEEEEE_________ . . . . . 1851 VFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEA 1900 EEEE___HHHHHHHHHHHHHHHH___________EEEEEE________EE . . . . . 1901 FDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIH 1950 EEE_____HHHHHHHHH___________HHHHHHHHHH______EEEEEE . . . . . 1951 FTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGF 2000 E_______HHHHHHHH________HHHHHHHHHHHHHHHHHHHHHH____ . . . . . 2001 MYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIG 2050 ______HHHHHHHHHHHHH__HHHHHHH______________________ . . . . . 2051 PKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP 2100 __________________________________________________ . . . . . 2101 GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD 2150 ______EEE_________________________________________ . . . . . 2151 VGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGF 2200 EEE_______________________________________________ . . . . . 2201 GRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP 2250 __________________________________________________ . . . . . 2251 RGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDG 2300 __________________________________________________ . . . . . 2301 VGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPG 2350 __________________________________________________ . . . . . 2351 IVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP 2400 EEEE_____________________HHHHHHHHHH_______________ . . . . . 2401 TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY 2450 HHHHHHHH______________EEEEEEEEEEEEE_______EEEEEEEE . . . . . 2451 NNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFK 2500 ___HHHHHHHHHH_HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH_____ . . . . . 2501 RVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQ 2550 ______HHHHHHHH__________HHHHHHHHHH_____EEEHHHHHHHH . . . . . 2551 LINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFG 2600 HHHHHHH_____EEEEEE_____HHHHHHHHH_EEEEEEEE_________ . . . . . 2601 SWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLD 2650 ________________HHHHHHHHHH__EEEEEE__HHHHHHHHHHHHH_ . . . . . 2651 MSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD 2700 ______HHHHHHEEEEEE_______________EEEEEEE_____EEEEH . . . . . 2701 FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQ 2750 HHHHHHHHHH___HHHHHHHHHHHHHHH______HHHHHHHHH______H . . . . . 2751 QLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK 2800 HHHHHHHHHHHHH____EEEEEEE___EEEEEEEEEE____EEEEEEEE_ . . . . . 2801 STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVK 2850 ______HHHHHH____________EEE__________________EEEEE . . . . . 2851 FGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTII 2900 EEEEEEE___________________EEE____EEE______________ . . . . . 2901 NQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPA 2950 _________________EEE___EEEEEEE____________________ . . . . . 2951 AVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT 3000 ___________________________________HHHHHHHHHHEEEE_ . . . . . 3001 ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAG 3050 ___HHHHH________EEEEEEE___HHHHHHHHH____HHHHHH_____ . . . . . 3051 QTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVST 3100 __EEEEEEHHHHHHHEEEE_______________________EEEEEEE_ . . . . . 3101 EPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENK 3150 ___EEE_________________EEEEEEE____EEEEEEE_________ . . 3151 FGSQKECEKVCAPVLAKPGVISVMGT 3176 ___HHHHHHHH_EEEE___EEEE___ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ method : 1 alpha-contents : 11.9 % beta-contents : 30.2 % coil-contents : 57.8 % class : beta method : 2 alpha-contents : 0.0 % beta-contents : 27.6 % coil-contents : 72.4 % class : beta ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ GPI: learning from metazoa -15.24 -2.85 -0.37 -1.57 -4.00 0.00 -32.00 0.00 0.00 -11.24 -3.43 -12.00 -12.00 0.00 0.00 0.00 -94.71 -11.82 -0.86 -0.70 -1.24 0.00 0.00 -12.00 0.00 -0.41 -11.24 -3.43 -12.00 -12.00 -16.00 -12.00 0.00 -93.70 ID: tem12gi|3127926|emb|CAA36267.1| AC: xxx Len: 3150 1:I 3136 Sc: -93.70 Pv: 9.663929e-01 NO_GPI_SITE GPI: learning from protozoa -29.48 -2.60 -0.58 -0.26 -4.00 -4.00 0.00 0.00 -0.34 -8.49 -11.73 -12.00 -12.00 -16.00 -12.00 0.00 -113.48 -24.59 -0.42 -0.73 -1.35 -4.00 0.00 -8.00 0.00 -0.59 -9.51 -11.73 -12.00 -12.00 -16.00 -12.00 0.00 -112.93 ID: tem12gi|3127926|emb|CAA36267.1| AC: xxx Len: 3150 1:I 3135 Sc: -112.93 Pv: 9.792899e-01 NO_GPI_SITE ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ /bio_software/1D/signal/signalp-1.2/signalp[161]: 13668 Bus error(coredump) signalp: ERROR in sequence file(s), check syntax /bio_software/1D/signal/signalp-1.2/signalp[161]: 13678 Bus error(coredump) signalp: ERROR in sequence file(s), check syntax /bio_software/1D/signal/signalp-1.2/signalp[161]: 13686 Bus error(coredump) signalp: ERROR in sequence file(s), check syntax ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ low complexity regions: SEG 12 2.2 2.5 >tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] 1-702 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQA DVKNGAAADIIFLVDSSWTIGEEHFQLVRE FLYDVVKSLAVGENDFHFALVQFNGNPHTE FLLNTYRTKQEVLSHISNMSYIGGTNQTGK GLEYIMQSHLTKAAGSRAGDGVPQVIVVLT DGHSKDGLALPSAELKSADVNVFAIGVEDA DEGALKEIASEPLNMHMFNLENFTSLHDIV GNLVSCVHSSVSPERAGDTETLKDITAQDS ADIIFLIDGSNNTGSVNFAVILDFLVNLLE KLPIGTQQIRVGVVQFSDEPRTMFSLDTYS TKAQVLGAVKALGFAGGELANIGLALDFVV ENHFTRAGGSRVEEGVPQVLVLISAGPSSD EIRYGVVALKQASVFSFGLGAQAASRAELQ HIATDDNLVFTVPEFRSFGDLQEKLLPYIV GVAQRHIVLKPPTIVTQVIEVNKRDIVFLV DGSSALGLANFNAIRDFIAKVIQRLEIGQD LIQVAVAQYADTVRPEFYFNTHPTKREVIT AVRKMKPLDGSALYTGSALDFVRNNLFTSS AGYRAAEGIPKLLVLITGGKSLDEISQPAQ ELKRSSIMAFAIGNKGADQAELEEIAFDSS LVFIPAEFRAAPLQGMLPGLLAPLRTLSGT PEVHSNKRDIIFLLDGSANVGKTNFPYVRD FVMNLVNSLDIGNDNIRVGLVQFSDTPVTE FSLNTYQTKSDI lghlrqlqlqggsglntg 703-720 721-804 SALSYVYANHFTEAGGSRIREHVPQLLLLL TAGQSEDSYLQAANALTRAGILTFCVGASQ ANKAELEQIAFNPSLVYLMDDFSS lpalpqqliqpl 805-816 817-1616 TTYVSGGVEEVPLAQPESKRDILFLFDGSA NLVGQFPVVRDFLYKIIDELNVKPEGTRIA VAQYSDDVKVESRFDEHQSKPEILNLVKRM KIKTGKALNLGYALDYAQRYIFVKSAGSRI EDGVLQFLVLLVAGRSSDRVDGPASNLKQS GVVPFIFQAKNADPAELEQIVLSPAFILAA ESLPKIGDLHPQIVNLLKSVHNGAPAPVSG EKDVVFLLDGSEGVRSGFPLLKEFVQRVVE SLDVGQDRVRVAVVQYSDRTRPEFYLNSYM NKQDVVNAVRQLTLLGGPTPNTGAALEFVL RNILVSSAGSRITEGVPQLLIVLTADRSGD DVRNPSVVVKRGGAVPIGIGIGNADITEMQ TISFIPDFAVAIPTFRQLGTVQQVISERVT QLTREELSRLQPVLQPLPSPGVGGKRDVVF LIDGSQSAGPEFQYVRTLIERLVDYLDVGF DTTRVAVIQFSDDPKAEFLLNAHSSKDEVQ NAVQRLRPKGGRQINVGNALEYVSRNIFKR PLGSRIEEGVPQFLVLISSGKSDDEVVVPA VELKQFGVAPFTIARNADQEELVKISLSPE YVFSVSTFRELPSLEQKLLTPITTLTSEQI QKLLASTRYPPPAVESDAADIVFLIDSSEG VRPDGFAHIRDFVSRIVRRLNIGPSKVRVG VVQFSNDVFPEFYLKTYRSQAPVLDAIRRL RLRGGSPLNTGKALEFVARNLFVKSAGSRI EDGVPQHLVLVLGGKSQDDVSRFAQVIRSS GIVSLGVGDRNIDRTELQTITNDPRLVFTV REFRELPNIEERIMNSFGPS aatpappgvdtppp 1617-1630 1631-1801 SRPEKKKADIVFLLDGSINFRRDSFQEVLR FVSEIVDTVYEDGDSIQVGLVQYNSDPTDE FFLKDFSTKRQIIDAINKVVYKGGRHANTK VGLEHLRVNHFVPEAGSRLDQRVPQIAFVI TGGKSVEDAQDVSLALTQRGVKVFAVGVRN IDSEEVGKIASNSATAFRVGN vqelselseqvletl 1802-1816 1817-2001 HDAMHETLCPGVTDAAKACNLDVILGFDGS RDQNVFVAQKGFESKVDAILNRISQMHRVS CSGGRSPTVRVSVVANTPSGPVEAFDFDEY QPEMLEKFRNMRSQHPYVLTEDTLKVYLNK FRQSSPDSVKVVIHFTDGADGDLADLHRAS ENLRQEGVRALILVGLERVVNLERLMHLEF GRGFM ydrplrlnlldldyel 2002-2017 2018-2043 AEQLDNIAEKACCGVPCKCSGQRGDR gpigsigpkgipgedgyrgypgdeggpger 2044-2077 gppg 2078-2103 VNGTQGFQGCPGQRGVKGSRGFPGEK gevgeigldgldgedgdkglpg 2104-2125 2126-2176 SSGEKGNPGRRGDKGPRGEKGERGDVGIRG DPGNPGQDSQERGPKGETGDL gpmgvpgrdgvpggpgetgknggfgrrgpp 2177-2225 gakgnkggpgqpgfegeqg 2226-2227 TR gaqgpagpagppg 2228-2240 2241-2242 LI geqgisgprgsggargapgergrtgplgrk 2243-2294 gepgepgpkggignpgprgetg 2295-2299 DDGRD gvgsegrrgkkgerg 2300-2314 2315-2355 FPGYPGPKGNPGEPGLNGTTGPKGIRGRRG NSGPPGIVGQK grpgypgpagprgnrg 2356-2371 2372-2855 DSIDQCALIQSIKDKCPCCYGPLECPVFPT ELAFALDTSEGVNQDTFGRMRDVVLSIVNV LTIAESNCPTGARVAVVTYNNEVTTEIRFA DSKRKSVLLDKIKNLQVALTSKQQSLETAM SFVARNTFKRVRNGFLMRKVAVFFSNTPTR ASPQLREAVLKLSDAGITPLFLTRQEDRQL INALQINNTAVGHALVLPAGRDLTDFLENV LTCHVCLDICNIDPSCGFGSWRPSFRDRRA AGSDVDIDMAFILDSAETTTLFQFNEMKKY IAYLVRQLDMSPDPKASQHFARVAVVQHAP SESVDNASMPPVKVEFSLTDYGSKEKLVDF LSRGMTQLQGTRALGSAIEYTIENVFESAP NPRDLKIVVLMLTGEVPEQQLEEAQRVILQ AKCKGYFFVVLGIGRKVNIKEVYTFASEPN DVFFKLVDKSTELNEEPLMRFGRLLPSFVS SENAFYLSPDIRKQCDWFQGDQPTKNLVKF GHKQ vnvpnnvtssptsnpvtttkpvtttkpvtt 2856-2898 ttkpvttttkpvt 2899-2904 IINQPS vkpaaakpapakpvaakpvatktatvrppv 2905-2966 avkpataakpvaakpaavrppaaaakpvat kp 2967-2972 EVPRPQ aakpaatkpattkp 2973-2986 2987-3073 VVKMLREVQVFEITENSAKLHWERPEPPGP YFYDLTVTSAHDQSLVLKQNLTVTDRVIGG LLAGQTYHVAVVCYLRSQVRATYHGSF stkksqppppqparsassst 3074-3093 3094-3176 INLMVSTEPLALTETDICKLPKDEGTCRDF ILKWYYDPNTKSCARFWYGGCGGNENKFGS QKECEKVCAPVLAKPGVISVMGT low complexity regions: SEG 25 3.0 3.3 >tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] 1-305 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQA DVKNGAAADIIFLVDSSWTIGEEHFQLVRE FLYDVVKSLAVGENDFHFALVQFNGNPHTE FLLNTYRTKQEVLSHISNMSYIGGTNQTGK GLEYIMQSHLTKAAGSRAGDGVPQVIVVLT DGHSKDGLALPSAELKSADVNVFAIGVEDA DEGALKEIASEPLNMHMFNLENFTSLHDIV GNLVSCVHSSVSPERAGDTETLKDITAQDS ADIIFLIDGSNNTGSVNFAVILDFLVNLLE KLPIGTQQIRVGVVQFSDEPRTMFSLDTYS TKAQV lgavkalgfaggelaniglal 306-326 327-1050 DFVVENHFTRAGGSRVEEGVPQVLVLISAG PSSDEIRYGVVALKQASVFSFGLGAQAASR AELQHIATDDNLVFTVPEFRSFGDLQEKLL PYIVGVAQRHIVLKPPTIVTQVIEVNKRDI VFLVDGSSALGLANFNAIRDFIAKVIQRLE IGQDLIQVAVAQYADTVRPEFYFNTHPTKR EVITAVRKMKPLDGSALYTGSALDFVRNNL FTSSAGYRAAEGIPKLLVLITGGKSLDEIS QPAQELKRSSIMAFAIGNKGADQAELEEIA FDSSLVFIPAEFRAAPLQGMLPGLLAPLRT LSGTPEVHSNKRDIIFLLDGSANVGKTNFP YVRDFVMNLVNSLDIGNDNIRVGLVQFSDT PVTEFSLNTYQTKSDILGHLRQLQLQGGSG LNTGSALSYVYANHFTEAGGSRIREHVPQL LLLLTAGQSEDSYLQAANALTRAGILTFCV GASQANKAELEQIAFNPSLVYLMDDFSSLP ALPQQLIQPLTTYVSGGVEEVPLAQPESKR DILFLFDGSANLVGQFPVVRDFLYKIIDEL NVKPEGTRIAVAQYSDDVKVESRFDEHQSK PEILNLVKRMKIKTGKALNLGYALDYAQRY IFVKSAGSRIEDGVLQFLVLLVAGRSSDRV DGPASNLKQSGVVPFIFQAKNADPAELEQI VLSPAFILAAESLPKIGDLHPQIVNLLKSV HNGAPAPVSGEKDVVFLLDGSEGVRSGFPL LKEF vqrvvesldvgqdrvrvavvqysdrtr 1051-1077 1078-1191 PEFYLNSYMNKQDVVNAVRQLTLLGGPTPN TGAALEFVLRNILVSSAGSRITEGVPQLLI VLTADRSGDDVRNPSVVVKRGGAVPIGIGI GNADITEMQTISFIPDFAVAIPTF rqlgtvqqviservtqltreelsrlqpvlq 1192-1230 plpspgvgg 1231-1396 KRDVVFLIDGSQSAGPEFQYVRTLIERLVD YLDVGFDTTRVAVIQFSDDPKAEFLLNAHS SKDEVQNAVQRLRPKGGRQINVGNALEYVS RNIFKRPLGSRIEEGVPQFLVLISSGKSDD EVVVPAVELKQFGVAPFTIARNADQEELVK ISLSPEYVFSVSTFRE lpsleqklltpittltseqiqkll 1397-1420 1421-1613 ASTRYPPPAVESDAADIVFLIDSSEGVRPD GFAHIRDFVSRIVRRLNIGPSKVRVGVVQF SNDVFPEFYLKTYRSQAPVLDAIRRLRLRG GSPLNTGKALEFVARNLFVKSAGSRIEDGV PQHLVLVLGGKSQDDVSRFAQVIRSSGIVS LGVGDRNIDRTELQTITNDPRLVFTVREFR ELPNIEERIMNSF gpsaatpappgvdtpppsrp 1614-1633 1634-1873 EKKKADIVFLLDGSINFRRDSFQEVLRFVS EIVDTVYEDGDSIQVGLVQYNSDPTDEFFL KDFSTKRQIIDAINKVVYKGGRHANTKVGL EHLRVNHFVPEAGSRLDQRVPQIAFVITGG KSVEDAQDVSLALTQRGVKVFAVGVRNIDS EEVGKIASNSATAFRVGNVQELSELSEQVL ETLHDAMHETLCPGVTDAAKACNLDVILGF DGSRDQNVFVAQKGFESKVDAILNRISQMH rvscsggrsptvrvsvvantpsgpv 1874-1898 1899-1968 EAFDFDEYQPEMLEKFRNMRSQHPYVLTED TLKVYLNKFRQSSPDSVKVVIHFTDGADGD LADLHRASEN lrqegvralilvglervvnlerlmhlefgr 1969-1999 g 2000-2036 FMYDRPLRLNLLDLDYELAEQLDNIAEKAC CGVPCKC sgqrgdrgpigsigpkgipgedgyrgypgd 2037-2372 eggpgergppgvngtqgfqgcpgqrgvkgs rgfpgekgevgeigldgldgedgdkglpgs sgekgnpgrrgdkgprgekgergdvgirgd pgnpgqdsqergpkgetgdlgpmgvpgrdg vpggpgetgknggfgrrgppgakgnkggpg qpgfegeqgtrgaqgpagpagppgligeqg isgprgsggargapgergrtgplgrkgepg epgpkggignpgprgetgddgrdgvgsegr rgkkgergfpgypgpkgnpgepglngttgp kgirgrrgnsgppgivgqkgrpgypgpagp rgnrgd 2373-2853 SIDQCALIQSIKDKCPCCYGPLECPVFPTE LAFALDTSEGVNQDTFGRMRDVVLSIVNVL TIAESNCPTGARVAVVTYNNEVTTEIRFAD SKRKSVLLDKIKNLQVALTSKQQSLETAMS FVARNTFKRVRNGFLMRKVAVFFSNTPTRA SPQLREAVLKLSDAGITPLFLTRQEDRQLI NALQINNTAVGHALVLPAGRDLTDFLENVL TCHVCLDICNIDPSCGFGSWRPSFRDRRAA GSDVDIDMAFILDSAETTTLFQFNEMKKYI AYLVRQLDMSPDPKASQHFARVAVVQHAPS ESVDNASMPPVKVEFSLTDYGSKEKLVDFL SRGMTQLQGTRALGSAIEYTIENVFESAPN PRDLKIVVLMLTGEVPEQQLEEAQRVILQA KCKGYFFVVLGIGRKVNIKEVYTFASEPND VFFKLVDKSTELNEEPLMRFGRLLPSFVSS ENAFYLSPDIRKQCDWFQGDQPTKNLVKFG H kqvnvpnnvtssptsnpvtttkpvtttkpv 2854-2989 ttttkpvttttkpvtiinqpsvkpaaakpa pakpvaakpvatktatvrppvavkpataak pvaakpaavrppaaaakpvatkpevprpqa akpaatkpattkpvvk 2990-3176 MLREVQVFEITENSAKLHWERPEPPGPYFY DLTVTSAHDQSLVLKQNLTVTDRVIGGLLA GQTYHVAVVCYLRSQVRATYHGSFSTKKSQ PPPPQPARSASSSTINLMVSTEPLALTETD ICKLPKDEGTCRDFILKWYYDPNTKSCARF WYGGCGGNENKFGSQKECEKVCAPVLAKPG VISVMGT low complexity regions: SEG 45 3.4 3.75 >tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] 1-926 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQA DVKNGAAADIIFLVDSSWTIGEEHFQLVRE FLYDVVKSLAVGENDFHFALVQFNGNPHTE FLLNTYRTKQEVLSHISNMSYIGGTNQTGK GLEYIMQSHLTKAAGSRAGDGVPQVIVVLT DGHSKDGLALPSAELKSADVNVFAIGVEDA DEGALKEIASEPLNMHMFNLENFTSLHDIV GNLVSCVHSSVSPERAGDTETLKDITAQDS ADIIFLIDGSNNTGSVNFAVILDFLVNLLE KLPIGTQQIRVGVVQFSDEPRTMFSLDTYS TKAQVLGAVKALGFAGGELANIGLALDFVV ENHFTRAGGSRVEEGVPQVLVLISAGPSSD EIRYGVVALKQASVFSFGLGAQAASRAELQ HIATDDNLVFTVPEFRSFGDLQEKLLPYIV GVAQRHIVLKPPTIVTQVIEVNKRDIVFLV DGSSALGLANFNAIRDFIAKVIQRLEIGQD LIQVAVAQYADTVRPEFYFNTHPTKREVIT AVRKMKPLDGSALYTGSALDFVRNNLFTSS AGYRAAEGIPKLLVLITGGKSLDEISQPAQ ELKRSSIMAFAIGNKGADQAELEEIAFDSS LVFIPAEFRAAPLQGMLPGLLAPLRTLSGT PEVHSNKRDIIFLLDGSANVGKTNFPYVRD FVMNLVNSLDIGNDNIRVGLVQFSDTPVTE FSLNTYQTKSDILGHLRQLQLQGGSGLNTG SALSYVYANHFTEAGGSRIREHVPQLLLLL TAGQSEDSYLQAANALTRAGILTFCVGASQ ANKAELEQIAFNPSLVYLMDDFSSLPALPQ QLIQPLTTYVSGGVEEVPLAQPESKRDILF LFDGSANLVGQFPVVRDFLYKIIDELNVKP EGTRIAVAQYSDDVKVESRFDEHQSKPEIL NLVKRMKIKTGKALNLGYALDYAQRY ifvksagsriedgvlqflvllvagrssdrv 927-1070 dgpasnlkqsgvvpfifqaknadpaeleqi vlspafilaaeslpkigdlhpqivnllksv hngapapvsgekdvvflldgsegvrsgfpl lkefvqrvvesldvgqdrvrvavv 1071-1363 QYSDRTRPEFYLNSYMNKQDVVNAVRQLTL LGGPTPNTGAALEFVLRNILVSSAGSRITE GVPQLLIVLTADRSGDDVRNPSVVVKRGGA VPIGIGIGNADITEMQTISFIPDFAVAIPT FRQLGTVQQVISERVTQLTREELSRLQPVL QPLPSPGVGGKRDVVFLIDGSQSAGPEFQY VRTLIERLVDYLDVGFDTTRVAVIQFSDDP KAEFLLNAHSSKDEVQNAVQRLRPKGGRQI NVGNALEYVSRNIFKRPLGSRIEEGVPQFL VLISSGKSDDEVVVPAVELKQFG vapftiarnadqeelvkislspeyvfsvst 1364-1444 frelpsleqklltpittltseqiqkllast rypppavesdaadivflidss 1445-1952 EGVRPDGFAHIRDFVSRIVRRLNIGPSKVR VGVVQFSNDVFPEFYLKTYRSQAPVLDAIR RLRLRGGSPLNTGKALEFVARNLFVKSAGS RIEDGVPQHLVLVLGGKSQDDVSRFAQVIR SSGIVSLGVGDRNIDRTELQTITNDPRLVF TVREFRELPNIEERIMNSFGPSAATPAPPG VDTPPPSRPEKKKADIVFLLDGSINFRRDS FQEVLRFVSEIVDTVYEDGDSIQVGLVQYN SDPTDEFFLKDFSTKRQIIDAINKVVYKGG RHANTKVGLEHLRVNHFVPEAGSRLDQRVP QIAFVITGGKSVEDAQDVSLALTQRGVKVF AVGVRNIDSEEVGKIASNSATAFRVGNVQE LSELSEQVLETLHDAMHETLCPGVTDAAKA CNLDVILGFDGSRDQNVFVAQKGFESKVDA ILNRISQMHRVSCSGGRSPTVRVSVVANTP SGPVEAFDFDEYQPEMLEKFRNMRSQHPYV LTEDTLKVYLNKFRQSSPDSVKVVIHFT dgadgdladlhrasenlrqegvralilvgl 1953-2026 ervvnlerlmhlefgrgfmydrplrlnlld ldyelaeqldniae 2027-2036 KACCGVPCKC sgqrgdrgpigsigpkgipgedgyrgypgd 2037-2372 eggpgergppgvngtqgfqgcpgqrgvkgs rgfpgekgevgeigldgldgedgdkglpgs sgekgnpgrrgdkgprgekgergdvgirgd pgnpgqdsqergpkgetgdlgpmgvpgrdg vpggpgetgknggfgrrgppgakgnkggpg qpgfegeqgtrgaqgpagpagppgligeqg isgprgsggargapgergrtgplgrkgepg epgpkggignpgprgetgddgrdgvgsegr rgkkgergfpgypgpkgnpgepglngttgp kgirgrrgnsgppgivgqkgrpgypgpagp rgnrgd 2373-2853 SIDQCALIQSIKDKCPCCYGPLECPVFPTE LAFALDTSEGVNQDTFGRMRDVVLSIVNVL TIAESNCPTGARVAVVTYNNEVTTEIRFAD SKRKSVLLDKIKNLQVALTSKQQSLETAMS FVARNTFKRVRNGFLMRKVAVFFSNTPTRA SPQLREAVLKLSDAGITPLFLTRQEDRQLI NALQINNTAVGHALVLPAGRDLTDFLENVL TCHVCLDICNIDPSCGFGSWRPSFRDRRAA GSDVDIDMAFILDSAETTTLFQFNEMKKYI AYLVRQLDMSPDPKASQHFARVAVVQHAPS ESVDNASMPPVKVEFSLTDYGSKEKLVDFL SRGMTQLQGTRALGSAIEYTIENVFESAPN PRDLKIVVLMLTGEVPEQQLEEAQRVILQA KCKGYFFVVLGIGRKVNIKEVYTFASEPND VFFKLVDKSTELNEEPLMRFGRLLPSFVSS ENAFYLSPDIRKQCDWFQGDQPTKNLVKFG H kqvnvpnnvtssptsnpvtttkpvtttkpv 2854-2989 ttttkpvttttkpvtiinqpsvkpaaakpa pakpvaakpvatktatvrppvavkpataak pvaakpaavrppaaaakpvatkpevprpqa akpaatkpattkpvvk 2990-3176 MLREVQVFEITENSAKLHWERPEPPGPYFY DLTVTSAHDQSLVLKQNLTVTDRVIGGLLA GQTYHVAVVCYLRSQVRATYHGSFSTKKSQ PPPPQPARSASSSTINLMVSTEPLALTETD ICKLPKDEGTCRDFILKWYYDPNTKSCARF WYGGCGGNENKFGSQKECEKVCAPVLAKPG VISVMGT low complexity regions: XNU # Score cutoff = 21, Search from offsets 1 to 4 # both members of each repeat flagged # lambda = 0.347, K = 0.200, H = 0.664 >tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] MRKHRHLPLVAVFCLFLSGFPTTHAqqqqadvkngaaadiiflvDSSWTIGEEHFQLVRE FLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGK GLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDA DEGALKEIASEPLNMHMFNLENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDS ADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSD EIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIV GVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQD LIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSS AGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS LVFIPAEFRAAPlqgmlpgllaplRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRD FVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTG SALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQ ANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILF LFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPA SNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGA PAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEF YLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLT ADRSGDDVRNPSVVVKRGGavpigigignadITEMQTISFIPDFAVAIPTFRQLGTVQQV ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVD YLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVS RNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVVVPAVELKQFGVAPFTIARNADQEELVK ISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFL IDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFA QVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGpsaatp appgvdtpppsrpekkkADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGL VQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLD QRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG NVQELSELSeqvletlhdamhetlCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFES KVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQ HPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILV GLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSgqr gdrgpigsigpkgipgedgyrgypgdeggpgergppgvngtqgfqgcpgqrgvkgsrgfp gekgevgeigldgldgedgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpgnp gqdsqergpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnkggpgqpgf egeqgtrgaqgpagpagppgligeqgisgprgsggargapgergrtgplgrkgepgepgp kggignpgprgetgddgrdgvgsegrrgkkgergfpgypgpkgnpgepglngttgpkgir grrgnsgppgivgqkgrpgypgpagprgnrgdSIDQCALIQSIKDKCPCCYGPLECPVFP TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRF ADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPT RASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLEN VLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKK YIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVIL QAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFV SSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVnvpnnvtssptsnpvtttkpvttt kpvttttkpvttttkpvtiiNQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPAT AAKPVAAKPAAVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCY LRSQVRATYHGSFstkksqppppqparsassstINLMVSTEPLALTETDICKLPKDEGTC RDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 1 - 25 MRKHRHLPLV AVFCLFLSGF PTTHA 26 - 44 qqqqa dvkngaaadi iflv 45 - 612 DSSWTI GEEHFQLVRE FLYDVVKSLA VGENDFHFAL VQFNGNPHTE FLLNTYRTKQ EVLS HISNMS YIGGTNQTGK GLEYIMQSHL TKAAGSRAGD GVPQVIVVLT DGHSKDGLAL PSAE LKSADV NVFAIGVEDA DEGALKEIAS EPLNMHMFNL ENFTSLHDIV GNLVSCVHSS VSPE RAGDTE TLKDITAQDS ADIIFLIDGS NNTGSVNFAV ILDFLVNLLE KLPIGTQQIR VGVV QFSDEP RTMFSLDTYS TKAQVLGAVK ALGFAGGELA NIGLALDFVV ENHFTRAGGS RVEE GVPQVL VLISAGPSSD EIRYGVVALK QASVFSFGLG AQAASRAELQ HIATDDNLVF TVPE FRSFGD LQEKLLPYIV GVAQRHIVLK PPTIVTQVIE VNKRDIVFLV DGSSALGLAN FNAI RDFIAK VIQRLEIGQD LIQVAVAQYA DTVRPEFYFN THPTKREVIT AVRKMKPLDG SALY TGSALD FVRNNLFTSS AGYRAAEGIP KLLVLITGGK SLDEISQPAQ ELKRSSIMAF AIGN KGADQA ELEEIAFDSS LVFIPAEFRA AP 613 - 624 lqgmlpgl lapl 625 - 1159 RTLSGT PEVHSNKRDI IFLLDGSANV GKTNFPYVRD FVMNLVNSLD IGNDNIRVGL VQFS DTPVTE FSLNTYQTKS DILGHLRQLQ LQGGSGLNTG SALSYVYANH FTEAGGSRIR EHVP QLLLLL TAGQSEDSYL QAANALTRAG ILTFCVGASQ ANKAELEQIA FNPSLVYLMD DFSS LPALPQ QLIQPLTTYV SGGVEEVPLA QPESKRDILF LFDGSANLVG QFPVVRDFLY KIID ELNVKP EGTRIAVAQY SDDVKVESRF DEHQSKPEIL NLVKRMKIKT GKALNLGYAL DYAQ RYIFVK SAGSRIEDGV LQFLVLLVAG RSSDRVDGPA SNLKQSGVVP FIFQAKNADP AELE QIVLSP AFILAAESLP KIGDLHPQIV NLLKSVHNGA PAPVSGEKDV VFLLDGSEGV RSGF PLLKEF VQRVVESLDV GQDRVRVAVV QYSDRTRPEF YLNSYMNKQD VVNAVRQLTL LGGP TPNTGA ALEFVLRNIL VSSAGSRITE GVPQLLIVLT ADRSGDDVRN PSVVVKRGG 1160 - 1171 a vpigigigna d 1172 - 1614 ITEMQTISF IPDFAVAIPT FRQLGTVQQV ISERVTQLTR EELSRLQPVL QPLPSPGVGG K RDVVFLIDG SQSAGPEFQY VRTLIERLVD YLDVGFDTTR VAVIQFSDDP KAEFLLNAHS S KDEVQNAVQ RLRPKGGRQI NVGNALEYVS RNIFKRPLGS RIEEGVPQFL VLISSGKSDD E VVVPAVELK QFGVAPFTIA RNADQEELVK ISLSPEYVFS VSTFRELPSL EQKLLTPITT L TSEQIQKLL ASTRYPPPAV ESDAADIVFL IDSSEGVRPD GFAHIRDFVS RIVRRLNIGP S KVRVGVVQF SNDVFPEFYL KTYRSQAPVL DAIRRLRLRG GSPLNTGKAL EFVARNLFVK S AGSRIEDGV PQHLVLVLGG KSQDDVSRFA QVIRSSGIVS LGVGDRNIDR TELQTITNDP R LVFTVREFR ELPNIEERIM NSFG 1615 - 1637 psaatp appgvdtppp srpekkk 1638 - 1809 ADI VFLLDGSINF RRDSFQEVLR FVSEIVDTVY EDGDSIQVGL VQYNSDPTDE FFLKDFS TKR QIIDAINKVV YKGGRHANTK VGLEHLRVNH FVPEAGSRLD QRVPQIAFVI TGGKSVE DAQ DVSLALTQRG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG NVQELSELS 1810 - 1824 e qvletlhdam hetl 1825 - 2037 CPGVTD AAKACNLDVI LGFDGSRDQN VFVAQKGFES KVDAILNRIS QMHRVSCSGG RSPT VRVSVV ANTPSGPVEA FDFDEYQPEM LEKFRNMRSQ HPYVLTEDTL KVYLNKFRQS SPDS VKVVIH FTDGADGDLA DLHRASENLR QEGVRALILV GLERVVNLER LMHLEFGRGF MYDR PLRLNL LDLDYELAEQ LDNIAEKACC GVPCKCS 2038 - 2372 gqr gdrgpigsig pkgipgedgy rgypgdeggp gergppgvng tqgfqgcpgq rgvkgsr gfp gekgevgeig ldgldgedgd kglpgssgek gnpgrrgdkg prgekgergd vgirgdp gnp gqdsqergpk getgdlgpmg vpgrdgvpgg pgetgknggf grrgppgakg nkggpgq pgf egeqgtrgaq gpagpagppg ligeqgisgp rgsggargap gergrtgplg rkgepge pgp kggignpgpr getgddgrdg vgsegrrgkk gergfpgypg pkgnpgepgl ngttgpk gir grrgnsgppg ivgqkgrpgy pgpagprgnr gd 2373 - 2856 SIDQCALI QSIKDKCPCC YGPLECPVFP TELAFALDTS EGVNQDTFGR MRDVVLSIVN VL TIAESNCP TGARVAVVTY NNEVTTEIRF ADSKRKSVLL DKIKNLQVAL TSKQQSLETA MS FVARNTFK RVRNGFLMRK VAVFFSNTPT RASPQLREAV LKLSDAGITP LFLTRQEDRQ LI NALQINNT AVGHALVLPA GRDLTDFLEN VLTCHVCLDI CNIDPSCGFG SWRPSFRDRR AA GSDVDIDM AFILDSAETT TLFQFNEMKK YIAYLVRQLD MSPDPKASQH FARVAVVQHA PS ESVDNASM PPVKVEFSLT DYGSKEKLVD FLSRGMTQLQ GTRALGSAIE YTIENVFESA PN PRDLKIVV LMLTGEVPEQ QLEEAQRVIL QAKCKGYFFV VLGIGRKVNI KEVYTFASEP ND VFFKLVDK STELNEEPLM RFGRLLPSFV SSENAFYLSP DIRKQCDWFQ GDQPTKNLVK FG HKQV 2857 - 2900 nvpn nvtssptsnp vtttkpvttt kpvttttkpv ttttkpvtii 2901 - 3073 NQPSVKPAAA KPAPAKPVAA KPVATKTATV RPPVAVKPAT AAKPVAAKPA AVRPPAAAAK PVATKPEVPR PQAAKPAATK PATTKPVVKM LREVQVFEIT ENSAKLHWER PEPPGPYFYD LTVTSAHDQS LVLKQNLTVT DRVIGGLLAG QTYHVAVVCY LRSQVRATYH GSF 3074 - 3093 stkksqp pppqparsas sst 3094 - 3176 INLMVST EPLALTETDI CKLPKDEGTC RDFILKWYYD PNTKSCARFW YGGCGGNENK FGS QKECEKV CAPVLAKPGV ISVMGT low complexity regions: DUST >tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVRE FLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGK GLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDA DEGALKEIASEPLNMHMFNLENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDS ADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSD EIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIV GVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQD LIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSS AGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS LVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRD FVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTG SALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQ ANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILF LFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPA SNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGA PAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEF YLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLT ADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVD YLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVS RNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVVVPAVELKQFGVAPFTIARNADQEELVK ISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFL IDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFA QVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATP APPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGL VQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLD QRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG NVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFES KVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQ HPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILV GLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQR GDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP GQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGF EGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGARGAPGERGRTGPLGRKGEPGEPGP KGGIGNPGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIR GRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRF ADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPT RASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLEN VLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKK YIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVIL QAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFV SSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTT KPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPAT AAKPVAAKPAAVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCY LRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTC RDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ coiled coil prediction for tem12gi|3127926|emb|CAA36267.1| sequence: 3150 amino acids, 21 residue(s) in coiled coil state Coil 1 * 2468* 2489* LLDKIKNLQVALTSKQQSLETA . | . | . | . | . | . 60 MRKHRHLPLV AVFCLFLSGF PTTHAQQQQA DVKNGAAADI IFLVDSSWTI GEEHFQLVRE ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 120 FLYDVVKSLA VGENDFHFAL VQFNGNPHTE FLLNTYRTKQ EVLSHISNMS YIGGTNQTGK ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 180 GLEYIMQSHL TKAAGSRAGD GVPQVIVVLT DGHSKDGLAL PSAELKSADV NVFAIGVEDA ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 240 DEGALKEIAS EPLNMHMFNL ENFTSLHDIV GNLVSCVHSS VSPERAGDTE TLKDITAQDS ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 300 ADIIFLIDGS NNTGSVNFAV ILDFLVNLLE KLPIGTQQIR VGVVQFSDEP RTMFSLDTYS ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 360 TKAQVLGAVK ALGFAGGELA NIGLALDFVV ENHFTRAGGS RVEEGVPQVL VLISAGPSSD ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 420 EIRYGVVALK QASVFSFGLG AQAASRAELQ HIATDDNLVF TVPEFRSFGD LQEKLLPYIV ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 480 GVAQRHIVLK PPTIVTQVIE VNKRDIVFLV DGSSALGLAN FNAIRDFIAK VIQRLEIGQD ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 540 LIQVAVAQYA DTVRPEFYFN THPTKREVIT AVRKMKPLDG SALYTGSALD FVRNNLFTSS ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 600 AGYRAAEGIP KLLVLITGGK SLDEISQPAQ ELKRSSIMAF AIGNKGADQA ELEEIAFDSS ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 660 LVFIPAEFRA APLQGMLPGL LAPLRTLSGT PEVHSNKRDI IFLLDGSANV GKTNFPYVRD ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 720 FVMNLVNSLD IGNDNIRVGL VQFSDTPVTE FSLNTYQTKS DILGHLRQLQ LQGGSGLNTG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 780 SALSYVYANH FTEAGGSRIR EHVPQLLLLL TAGQSEDSYL QAANALTRAG ILTFCVGASQ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 840 ANKAELEQIA FNPSLVYLMD DFSSLPALPQ QLIQPLTTYV SGGVEEVPLA QPESKRDILF ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 900 LFDGSANLVG QFPVVRDFLY KIIDELNVKP EGTRIAVAQY SDDVKVESRF DEHQSKPEIL ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 960 NLVKRMKIKT GKALNLGYAL DYAQRYIFVK SAGSRIEDGV LQFLVLLVAG RSSDRVDGPA ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1020 SNLKQSGVVP FIFQAKNADP AELEQIVLSP AFILAAESLP KIGDLHPQIV NLLKSVHNGA ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1080 PAPVSGEKDV VFLLDGSEGV RSGFPLLKEF VQRVVESLDV GQDRVRVAVV QYSDRTRPEF ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1140 YLNSYMNKQD VVNAVRQLTL LGGPTPNTGA ALEFVLRNIL VSSAGSRITE GVPQLLIVLT ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1200 ADRSGDDVRN PSVVVKRGGA VPIGIGIGNA DITEMQTISF IPDFAVAIPT FRQLGTVQQV ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1260 ISERVTQLTR EELSRLQPVL QPLPSPGVGG KRDVVFLIDG SQSAGPEFQY VRTLIERLVD ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1320 YLDVGFDTTR VAVIQFSDDP KAEFLLNAHS SKDEVQNAVQ RLRPKGGRQI NVGNALEYVS ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~14 4444444444 444~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1380 RNIFKRPLGS RIEEGVPQFL VLISSGKSDD EVVVPAVELK QFGVAPFTIA RNADQEELVK ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1440 ISLSPEYVFS VSTFRELPSL EQKLLTPITT LTSEQIQKLL ASTRYPPPAV ESDAADIVFL ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1500 IDSSEGVRPD GFAHIRDFVS RIVRRLNIGP SKVRVGVVQF SNDVFPEFYL KTYRSQAPVL ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1560 DAIRRLRLRG GSPLNTGKAL EFVARNLFVK SAGSRIEDGV PQHLVLVLGG KSQDDVSRFA ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1620 QVIRSSGIVS LGVGDRNIDR TELQTITNDP RLVFTVREFR ELPNIEERIM NSFGPSAATP ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1680 APPGVDTPPP SRPEKKKADI VFLLDGSINF RRDSFQEVLR FVSEIVDTVY EDGDSIQVGL ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1740 VQYNSDPTDE FFLKDFSTKR QIIDAINKVV YKGGRHANTK VGLEHLRVNH FVPEAGSRLD ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1800 QRVPQIAFVI TGGKSVEDAQ DVSLALTQRG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1860 NVQELSELSE QVLETLHDAM HETLCPGVTD AAKACNLDVI LGFDGSRDQN VFVAQKGFES 1222222222 2222222222 22~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border gabcdefgab cdefgabcde fg-------- ---------- ---------- ---------- * 21 M'95 -w register ~111111111 1111111111 11~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. 1133333333 333333~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~22 * 14 M'95 -w local . | . | . | . | . | . 1920 KVDAILNRIS QMHRVSCSGG RSPTVRVSVV ANTPSGPVEA FDFDEYQPEM LEKFRNMRSQ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. 2222222222 22~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 1980 HPYVLTEDTL KVYLNKFRQS SPDSVKVVIH FTDGADGDLA DLHRASENLR QEGVRALILV ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~477 7777777777 77~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2040 GLERVVNLER LMHLEFGRGF MYDRPLRLNL LDLDYELAEQ LDNIAEKACC GVPCKCSGQR ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~33333 3333333333 333333~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- -----defga bcdefgabcd efgabc---- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~1199999 9999999999 9999992~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~44444 4444444444 444444~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~1111 1111111111 111111~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2100 GDRGPIGSIG PKGIPGEDGY RGYPGDEGGP GERGPPGVNG TQGFQGCPGQ RGVKGSRGFP ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2160 GEKGEVGEIG LDGLDGEDGD KGLPGSSGEK GNPGRRGDKG PRGEKGERGD VGIRGDPGNP ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2220 GQDSQERGPK GETGDLGPMG VPGRDGVPGG PGETGKNGGF GRRGPPGAKG NKGGPGQPGF ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2280 EGEQGTRGAQ GPAGPAGPPG LIGEQGISGP RGSGGARGAP GERGRTGPLG RKGEPGEPGP ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2340 KGGIGNPGPR GETGDDGRDG VGSEGRRGKK GERGFPGYPG PKGNPGEPGL NGTTGPKGIR ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2400 GRRGNSGPPG IVGQKGRPGY PGPAGPRGNR GDSIDQCALI QSIKDKCPCC YGPLECPVFP ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2460 TELAFALDTS EGVNQDTFGR MRDVVLSIVN VLTIAESNCP TGARVAVVTY NNEVTTEIRF ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2520 ADSKRKSVLL DKIKNLQVAL TSKQQSLETA MSFVARNTFK RVRNGFLMRK VAVFFSNTPT ~~~1111466 6666666666 6666666664 42~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---fgabcde fgabcdefga bcdefgabcd ef-------- ---------- ---------- * 21 M'95 -w register ~~25557999 9999999999 9999999998 871~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~1111255 5555555555 5555555554 32~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~44444444 4444444444 4444444444 42~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~14444444 4444444222 22222111~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2580 RASPQLREAV LKLSDAGITP LFLTRQEDRQ LINALQINNT AVGHALVLPA GRDLTDFLEN ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2640 VLTCHVCLDI CNIDPSCGFG SWRPSFRDRR AAGSDVDIDM AFILDSAETT TLFQFNEMKK ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2700 YIAYLVRQLD MSPDPKASQH FARVAVVQHA PSESVDNASM PPVKVEFSLT DYGSKEKLVD ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2760 FLSRGMTQLQ GTRALGSAIE YTIENVFESA PNPRDLKIVV LMLTGEVPEQ QLEEAQRVIL ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~99 9999999999 * 14 M'95 -w local . | . | . | . | . | . 2820 QAKCKGYFFV VLGIGRKVNI KEVYTFASEP NDVFFKLVDK STELNEEPLM RFGRLLPSFV ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. 99954~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2880 SSENAFYLSP DIRKQCDWFQ GDQPTKNLVK FGHKQVNVPN NVTSSPTSNP VTTTKPVTTT ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 2940 KPVTTTTKPV TTTTKPVTII NQPSVKPAAA KPAPAKPVAA KPVATKTATV RPPVAVKPAT ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 3000 AAKPVAAKPA AVRPPAAAAK PVATKPEVPR PQAAKPAATK PATTKPVVKM LREVQVFEIT ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 3060 ENSAKLHWER PEPPGPYFYD LTVTSAHDQS LVLKQNLTVT DRVIGGLLAG QTYHVAVVCY ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | . | . | . 3120 LRSQVRATYH GSFSTKKSQP PPPQPARSAS SSTINLMVST EPLALTETDI CKLPKDEGTC ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border ---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif. ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local . | . | . | RDFILKWYYD PNTKSCARFW YGGCGGNENK ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- ---------- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ prediction of transmembrane regions with toppred2 *********************************** *TOPPREDM with eukaryotic function* *********************************** tem12.___inter___ is a single sequence Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok Using sequence file: tem12.___inter___ (1 sequences) MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTI GEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQ EVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLT DGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNL ENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDSADIIFLIDGS NNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVL VLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVF TVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLV DGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFN THPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIP KLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS LVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANV GKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS DILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLL TAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMD DFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVG QFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAG RSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLP KIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEF VQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTL LGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRN PSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQY VRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQ RLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD EVVVPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSL EQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPD GFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGG KSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFR ELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINF RRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKR QIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVI TGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG NVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQN VFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEA FDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIH FTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGF MYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIG PKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD VGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGF GRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP RGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDG VGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPG IVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY NNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFK RVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQ LINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFG SWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLD MSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQ QLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVK FGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTII NQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPA AVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAG QTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVST EPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENK FGSQKECEKVCAPVLAKPGVISVMGT (p)rokaryotic or (e)ukaryotic: e Charge-pair energy: 0 Length of full window (odd number!): 21 Length of core window (odd number!): 11 Number of residues to add to each end of helix: 1 Critical length: 60 Upper cutoff for candidates: 1 Lower cutoff for candidates: 0.6 Total of 8 structures are to be tested Candidate membrane-spanning segments: Helix Begin End Score Certainity 1 6 26 1.801 Certain 2 364 384 0.741 Putative 3 1172 1192 0.606 Putative 4 3042 3062 0.834 Putative ---------------------------------------------------------------------- Structure 1 Transmembrane segments included in this structure: Segment 1 2 3 4 Loop length 5 337 787 1849 114 K+R profile 4.00 + + + + CYT-EXT prof - 1.15 0.57 1.13 1.05 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 4.00 Tm probability: 0.00 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.46 -> Orientation: N-in ---------------------------------------------------------------------- Structure 2 Transmembrane segments included in this structure: Segment 1 3 4 Loop length 5 1145 1849 114 K+R profile 4.00 + + + CYT-EXT prof - 1.05 1.22 0.57 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 4.00 Tm probability: 0.01 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.74 -> Orientation: N-in ---------------------------------------------------------------------- Structure 3 Transmembrane segments included in this structure: Segment 1 2 4 Loop length 5 337 2657 114 K+R profile 4.00 + + + CYT-EXT prof - 1.15 1.13 0.57 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 4.00 Tm probability: 0.21 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.56 -> Orientation: N-in ---------------------------------------------------------------------- Structure 4 Transmembrane segments included in this structure: Segment 1 4 Loop length 5 3015 114 K+R profile 4.00 + + CYT-EXT prof - 0.57 1.20 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 4.00 Tm probability: 0.59 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.63 -> Orientation: N-in ---------------------------------------------------------------------- Structure 5 Transmembrane segments included in this structure: Segment 1 2 3 Loop length 5 337 787 1984 K+R profile 4.00 + + + CYT-EXT prof - 1.15 1.13 1.08 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 4.00 Tm probability: 0.01 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -1.06 -> Orientation: N-in ---------------------------------------------------------------------- Structure 6 Transmembrane segments included in this structure: Segment 1 3 Loop length 5 1145 1984 K+R profile 4.00 + + CYT-EXT prof - 1.08 1.22 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 4.00 Tm probability: 0.02 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.14 -> Orientation: N-in ---------------------------------------------------------------------- Structure 7 Transmembrane segments included in this structure: Segment 1 2 Loop length 5 337 2792 K+R profile 4.00 + + CYT-EXT prof - 1.16 1.13 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 4.00 Tm probability: 0.35 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: 0.03 -> Orientation: N-out ---------------------------------------------------------------------- Structure 8 Transmembrane segments included in this structure: Segment 1 Loop length 5 3150 K+R profile 4.00 + CYT-EXT prof - 1.21 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 4.00 Tm probability: 1.00 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -1.21 -> Orientation: N-in ---------------------------------------------------------------------- "tem12" 3176 6 26 #t 1.80104 364 384 #f 0.740625 1172 1192 #f 0.60625 3042 3062 #f 0.834375 ************************************ *TOPPREDM with prokaryotic function* ************************************ tem12.___inter___ is a single sequence Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok Using sequence file: tem12.___inter___ (1 sequences) MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTI GEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQ EVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLT DGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNL ENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDSADIIFLIDGS NNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVL VLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVF TVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLV DGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFN THPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIP KLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS LVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANV GKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS DILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLL TAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMD DFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVG QFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAG RSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLP KIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEF VQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTL LGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRN PSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQY VRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQ RLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD EVVVPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSL EQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPD GFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGG KSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFR ELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINF RRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKR QIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVI TGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG NVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQN VFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEA FDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIH FTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGF MYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIG PKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD VGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGF GRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP RGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDG VGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPG IVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY NNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFK RVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQ LINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFG SWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLD MSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQ QLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVK FGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTII NQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPA AVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAG QTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVST EPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENK FGSQKECEKVCAPVLAKPGVISVMGT (p)rokaryotic or (e)ukaryotic: p Charge-pair energy: 0 Length of full window (odd number!): 21 Length of core window (odd number!): 11 Number of residues to add to each end of helix: 1 Critical length: 60 Upper cutoff for candidates: 1 Lower cutoff for candidates: 0.6 Total of 8 structures are to be tested Candidate membrane-spanning segments: Helix Begin End Score Certainity 1 6 26 1.801 Certain 2 364 384 0.741 Putative 3 1172 1192 0.606 Putative 4 3042 3062 0.834 Putative ---------------------------------------------------------------------- Structure 1 Transmembrane segments included in this structure: Segment 1 2 3 4 Loop length 5 337 787 1849 114 K+R profile 3.00 + + + + CYT-EXT prof - 1.15 0.57 1.13 1.05 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 3.00 Tm probability: 0.00 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.46 -> Orientation: N-in ---------------------------------------------------------------------- Structure 2 Transmembrane segments included in this structure: Segment 1 3 4 Loop length 5 1145 1849 114 K+R profile 3.00 + + + CYT-EXT prof - 1.05 1.22 0.57 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 3.00 Tm probability: 0.01 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.74 -> Orientation: N-in ---------------------------------------------------------------------- Structure 3 Transmembrane segments included in this structure: Segment 1 2 4 Loop length 5 337 2657 114 K+R profile 3.00 + + + CYT-EXT prof - 1.15 1.13 0.57 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 3.00 Tm probability: 0.21 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.56 -> Orientation: N-in ---------------------------------------------------------------------- Structure 4 Transmembrane segments included in this structure: Segment 1 4 Loop length 5 3015 114 K+R profile 3.00 + + CYT-EXT prof - 0.57 1.20 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 3.00 Tm probability: 0.59 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.63 -> Orientation: N-in ---------------------------------------------------------------------- Structure 5 Transmembrane segments included in this structure: Segment 1 2 3 Loop length 5 337 787 1984 K+R profile 3.00 + + + CYT-EXT prof - 1.15 1.13 1.08 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 3.00 Tm probability: 0.01 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -1.06 -> Orientation: N-in ---------------------------------------------------------------------- Structure 6 Transmembrane segments included in this structure: Segment 1 3 Loop length 5 1145 1984 K+R profile 3.00 + + CYT-EXT prof - 1.08 1.22 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 3.00 Tm probability: 0.02 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -0.14 -> Orientation: N-in ---------------------------------------------------------------------- Structure 7 Transmembrane segments included in this structure: Segment 1 2 Loop length 5 337 2792 K+R profile 3.00 + + CYT-EXT prof - 1.16 1.13 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 3.00 Tm probability: 0.35 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: 0.03 -> Orientation: N-out ---------------------------------------------------------------------- Structure 8 Transmembrane segments included in this structure: Segment 1 Loop length 5 3150 K+R profile 3.00 + CYT-EXT prof - 1.21 For CYT-EXT profile neg. values indicate cytoplasmic preference. K+R difference: 3.00 Tm probability: 1.00 -> Orientation: N-in Charge-difference over N-terminal Tm (+-15 residues): 4.00 (NEG-POS)/(NEG+POS): -1.0000 NEG: 0.0000 POS: 3.0000 -> Orientation: N-in CYT-EXT difference: -1.21 -> Orientation: N-in ---------------------------------------------------------------------- "tem12" 3176 6 26 #t 1.80104 364 384 #f 0.740625 1172 1192 #f 0.60625 3042 3062 #f 0.834375 ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ NOW EXECUTING: /bio_software/1D/stat/saps/saps-stroh/SAPS.SSPA/saps /people/maria/tem12.___saps___ SAPS. Version of April 11, 1996. Date run: Fri Nov 10 09:56:07 2000 File: /people/maria/tem12.___saps___ ID tem12gi|3127926|emb|CAA36267.1| DE collagen type VI, alpha 3 chain [Homo sapiens] number of residues: 3176; molecular weight: 343.6 kdal 1 MRKHRHLPLV AVFCLFLSGF PTTHAQQQQA DVKNGAAADI IFLVDSSWTI GEEHFQLVRE 61 FLYDVVKSLA VGENDFHFAL VQFNGNPHTE FLLNTYRTKQ EVLSHISNMS YIGGTNQTGK 121 GLEYIMQSHL TKAAGSRAGD GVPQVIVVLT DGHSKDGLAL PSAELKSADV NVFAIGVEDA 181 DEGALKEIAS EPLNMHMFNL ENFTSLHDIV GNLVSCVHSS VSPERAGDTE TLKDITAQDS 241 ADIIFLIDGS NNTGSVNFAV ILDFLVNLLE KLPIGTQQIR VGVVQFSDEP RTMFSLDTYS 301 TKAQVLGAVK ALGFAGGELA NIGLALDFVV ENHFTRAGGS RVEEGVPQVL VLISAGPSSD 361 EIRYGVVALK QASVFSFGLG AQAASRAELQ HIATDDNLVF TVPEFRSFGD LQEKLLPYIV 421 GVAQRHIVLK PPTIVTQVIE VNKRDIVFLV DGSSALGLAN FNAIRDFIAK VIQRLEIGQD 481 LIQVAVAQYA DTVRPEFYFN THPTKREVIT AVRKMKPLDG SALYTGSALD FVRNNLFTSS 541 AGYRAAEGIP KLLVLITGGK SLDEISQPAQ ELKRSSIMAF AIGNKGADQA ELEEIAFDSS 601 LVFIPAEFRA APLQGMLPGL LAPLRTLSGT PEVHSNKRDI IFLLDGSANV GKTNFPYVRD 661 FVMNLVNSLD IGNDNIRVGL VQFSDTPVTE FSLNTYQTKS DILGHLRQLQ LQGGSGLNTG 721 SALSYVYANH FTEAGGSRIR EHVPQLLLLL TAGQSEDSYL QAANALTRAG ILTFCVGASQ 781 ANKAELEQIA FNPSLVYLMD DFSSLPALPQ QLIQPLTTYV SGGVEEVPLA QPESKRDILF 841 LFDGSANLVG QFPVVRDFLY KIIDELNVKP EGTRIAVAQY SDDVKVESRF DEHQSKPEIL 901 NLVKRMKIKT GKALNLGYAL DYAQRYIFVK SAGSRIEDGV LQFLVLLVAG RSSDRVDGPA 961 SNLKQSGVVP FIFQAKNADP AELEQIVLSP AFILAAESLP KIGDLHPQIV NLLKSVHNGA 1021 PAPVSGEKDV VFLLDGSEGV RSGFPLLKEF VQRVVESLDV GQDRVRVAVV QYSDRTRPEF 1081 YLNSYMNKQD VVNAVRQLTL LGGPTPNTGA ALEFVLRNIL VSSAGSRITE GVPQLLIVLT 1141 ADRSGDDVRN PSVVVKRGGA VPIGIGIGNA DITEMQTISF IPDFAVAIPT FRQLGTVQQV 1201 ISERVTQLTR EELSRLQPVL QPLPSPGVGG KRDVVFLIDG SQSAGPEFQY VRTLIERLVD 1261 YLDVGFDTTR VAVIQFSDDP KAEFLLNAHS SKDEVQNAVQ RLRPKGGRQI NVGNALEYVS 1321 RNIFKRPLGS RIEEGVPQFL VLISSGKSDD EVVVPAVELK QFGVAPFTIA RNADQEELVK 1381 ISLSPEYVFS VSTFRELPSL EQKLLTPITT LTSEQIQKLL ASTRYPPPAV ESDAADIVFL 1441 IDSSEGVRPD GFAHIRDFVS RIVRRLNIGP SKVRVGVVQF SNDVFPEFYL KTYRSQAPVL 1501 DAIRRLRLRG GSPLNTGKAL EFVARNLFVK SAGSRIEDGV PQHLVLVLGG KSQDDVSRFA 1561 QVIRSSGIVS LGVGDRNIDR TELQTITNDP RLVFTVREFR ELPNIEERIM NSFGPSAATP 1621 APPGVDTPPP SRPEKKKADI VFLLDGSINF RRDSFQEVLR FVSEIVDTVY EDGDSIQVGL 1681 VQYNSDPTDE FFLKDFSTKR QIIDAINKVV YKGGRHANTK VGLEHLRVNH FVPEAGSRLD 1741 QRVPQIAFVI TGGKSVEDAQ DVSLALTQRG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG 1801 NVQELSELSE QVLETLHDAM HETLCPGVTD AAKACNLDVI LGFDGSRDQN VFVAQKGFES 1861 KVDAILNRIS QMHRVSCSGG RSPTVRVSVV ANTPSGPVEA FDFDEYQPEM LEKFRNMRSQ 1921 HPYVLTEDTL KVYLNKFRQS SPDSVKVVIH FTDGADGDLA DLHRASENLR QEGVRALILV 1981 GLERVVNLER LMHLEFGRGF MYDRPLRLNL LDLDYELAEQ LDNIAEKACC GVPCKCSGQR 2041 GDRGPIGSIG PKGIPGEDGY RGYPGDEGGP GERGPPGVNG TQGFQGCPGQ RGVKGSRGFP 2101 GEKGEVGEIG LDGLDGEDGD KGLPGSSGEK GNPGRRGDKG PRGEKGERGD VGIRGDPGNP 2161 GQDSQERGPK GETGDLGPMG VPGRDGVPGG PGETGKNGGF GRRGPPGAKG NKGGPGQPGF 2221 EGEQGTRGAQ GPAGPAGPPG LIGEQGISGP RGSGGARGAP GERGRTGPLG RKGEPGEPGP 2281 KGGIGNPGPR GETGDDGRDG VGSEGRRGKK GERGFPGYPG PKGNPGEPGL NGTTGPKGIR 2341 GRRGNSGPPG IVGQKGRPGY PGPAGPRGNR GDSIDQCALI QSIKDKCPCC YGPLECPVFP 2401 TELAFALDTS EGVNQDTFGR MRDVVLSIVN VLTIAESNCP TGARVAVVTY NNEVTTEIRF 2461 ADSKRKSVLL DKIKNLQVAL TSKQQSLETA MSFVARNTFK RVRNGFLMRK VAVFFSNTPT 2521 RASPQLREAV LKLSDAGITP LFLTRQEDRQ LINALQINNT AVGHALVLPA GRDLTDFLEN 2581 VLTCHVCLDI CNIDPSCGFG SWRPSFRDRR AAGSDVDIDM AFILDSAETT TLFQFNEMKK 2641 YIAYLVRQLD MSPDPKASQH FARVAVVQHA PSESVDNASM PPVKVEFSLT DYGSKEKLVD 2701 FLSRGMTQLQ GTRALGSAIE YTIENVFESA PNPRDLKIVV LMLTGEVPEQ QLEEAQRVIL 2761 QAKCKGYFFV VLGIGRKVNI KEVYTFASEP NDVFFKLVDK STELNEEPLM RFGRLLPSFV 2821 SSENAFYLSP DIRKQCDWFQ GDQPTKNLVK FGHKQVNVPN NVTSSPTSNP VTTTKPVTTT 2881 KPVTTTTKPV TTTTKPVTII NQPSVKPAAA KPAPAKPVAA KPVATKTATV RPPVAVKPAT 2941 AAKPVAAKPA AVRPPAAAAK PVATKPEVPR PQAAKPAATK PATTKPVVKM LREVQVFEIT 3001 ENSAKLHWER PEPPGPYFYD LTVTSAHDQS LVLKQNLTVT DRVIGGLLAG QTYHVAVVCY 3061 LRSQVRATYH GSFSTKKSQP PPPQPARSAS SSTINLMVST EPLALTETDI CKLPKDEGTC 3121 RDFILKWYYD PNTKSCARFW YGGCGGNENK FGSQKECEKV CAPVLAKPGV ISVMGT -------------------------------------------------------------------------------- COMPOSITIONAL ANALYSIS (extremes relative to: swp23s) A :233( 7.3%); C : 30( 0.9%); D :179( 5.6%); E :183( 5.8%); F :149( 4.7%) G :303( 9.5%); H : 45( 1.4%); I :153( 4.8%); K :157( 4.9%); L :283( 8.9%) M : 35( 1.1%); N :130( 4.1%); P :211( 6.6%); Q :147( 4.6%); R :190( 6.0%) S :216( 6.8%); T :169( 5.3%); V :295( 9.3%); W : 6( 0.2%); Y : 62( 2.0%) KR : 347 ( 10.9%); ED : 362 ( 11.4%); AGP : 747 ( 23.5%); KRED : 709 ( 22.3%); KR-ED : -15 ( -0.5%); FIKMNY : 686 ( 21.6%); LVIFM : 915 ( 28.8%); ST : 385 ( 12.1%). -------------------------------------------------------------------------------- CHARGE DISTRIBUTIONAL ANALYSIS 1 0++0+00000 0000000000 0000000000 -0+00000-0 0000-00000 0--00000+- 61 000-00+000 00-0-00000 000000000- 000000+0+0 -000000000 000000000+ 121 00-0000000 0+0000+00- 0000000000 -000+-0000 000-0+00-0 0000000--0 181 --000+-000 -000000000 -000000-00 0000000000 000-+00-0- 00+-0000-0 241 0-00000-00 0000000000 00-000000- +00000000+ 0000000--0 +00000-000 301 0+0000000+ 0000000-00 000000-000 -0000+0000 +0--000000 000000000- 361 -0+000000+ 0000000000 00000+0-00 0000--0000 000-0+000- 00-+000000 421 0000+0000+ 000000000- 00++-00000 -000000000 0000+-000+ 000+0-000- 481 0000000000 -00+0-0000 0000++-000 00++0+00-0 000000000- 00+0000000 541 000+00-000 +00000000+ 00--000000 -0++000000 0000+00-00 -0--000-00 601 000000-0+0 0000000000 0000+00000 0-0000++-0 0000-00000 0+000000+- 661 000000000- 000-00+000 0000-0000- 00000000+0 -00000+000 0000000000 721 0000000000 00-0000+0+ -000000000 00000--000 0000000+00 0000000000 781 00+0-0-000 000000000- -000000000 0000000000 0000--0000 00-0++-000 841 00-0000000 00000+-000 +00--000+0 -00+000000 0--0+0-0+0 --000+0-00 901 000++0+0+0 0+00000000 -000+0000+ 0000+0--00 0000000000 +00-+0-000 961 000+000000 00000+00-0 0-0-000000 000000-000 +00-000000 000+000000 1021 000000-+-0 0000-00-00 +000000+-0 00+00-00-0 00-+0+0000 000-+0+0-0 1081 0000000+0- 00000+0000 0000000000 00-000+000 000000+00- 0000000000 1141 0-+00--0+0 00000++000 0000000000 -00-000000 00-0000000 0+00000000 1201 00-+00000+ --00+00000 0000000000 ++-00000-0 000000-000 0+000-+00- 1261 00-000-00+ 0000000--0 +0-0000000 0+--000000 +0+0+00+00 000000-000 1321 +000++0000 +0--000000 000000+0-- -000000-0+ 0000000000 +00-0--00+ 1381 00000-0000 0000+-0000 -0+0000000 000-000+00 000+000000 -0-00-0000 1441 0-00-00+0- 00000+-000 +00++00000 0+0+000000 00-000-000 +00+000000 1501 -00++0+0+0 0000000+00 -000+0000+ 0000+0--00 0000000000 +00--00+00 1561 000+000000 0000-+00-+ 0-000000-0 +00000+-0+ -0000--+00 0000000000 1621 00000-0000 0+0-+++0-0 0000-00000 ++-000-00+ 000-00-000 --0-000000 1681 00000-00-- 000+-000++ 000-000+00 0+00+0000+ 000-00+000 000-000+0- 1741 0+00000000 000+00--00 -0000000+0 0+000000+0 0-0--00+00 0000000+00 1801 000-00-00- 000-000-00 0-0000000- 00+0000-00 000-00+-00 00000+00-0 1861 +0-0000+00 000+000000 +0000+0000 00000000-0 0-0--000-0 0-+0+00+00 1921 000000--00 +0000+0+00 00-00+0000 00-00-0-00 -00+00-00+ 0-00+00000 1981 00-+0000-+ 0000-00+00 00-+00+000 0-0-0-00-0 0-000-+000 0000+0000+ 2041 0-+0000000 0+0000--00 +0000--000 0-+0000000 0000000000 +00+00+000 2101 0-+0-00-00 0-00-0--0- +0000000-+ 0000++0-+0 0+0-+0-+0- 000+0-0000 2161 00-00-+00+ 0-00-00000 000+-00000 00-00+0000 0++00000+0 0+00000000 2221 -0-000+000 0000000000 000-000000 +00000+000 0-+0+00000 ++0-00-000 2281 +00000000+ 0-00--0+-0 000-0++0++ 0-+0000000 0+0000-000 000000+00+ 2341 0++0000000 0000+0+000 000000+00+ 0-00-00000 000+-+0000 0000-00000 2401 0-00000-00 -0000-000+ 0+-0000000 00000-0000 000+000000 00-000-0+0 2461 0-0+++0000 -+0+000000 00+0000-00 00000+000+ +0+00000++ 0000000000 2521 +00000+-00 0+00-00000 0000+0--+0 0000000000 0000000000 0+-00-00-0 2581 00000000-0 000-000000 00+000+-++ 0000-0-0-0 0000-00-00 000000-0++ 2641 000000+00- 000-0+0000 00+0000000 00-00-0000 000+0-0000 -000+-+00- 2701 000+000000 00+000000- 000-000-00 000+-0+000 00000-00-0 00--00+000 2761 00+0+00000 00000++000 +-000000-0 0-000+00-+ 00-00--000 +00+000000 2821 00-0000000 -0++00-000 0-000+000+ 000+000000 0000000000 0000+00000 2881 +000000+00 0000+00000 00000+0000 +0000+0000 +0000+0000 +00000+000 2941 00+0000+00 00+000000+ 0000+0-00+ 0000+0000+ 0000+000+0 0+-0000-00 3001 -000+000-+ 0-0000000- 0000000-00 000+000000 -+00000000 0000000000 3061 0+000+0000 00000++000 000000+000 0000000000 -00000-0-0 0+00+--000 3121 +-000+000- 000+000+00 0000000-0+ 0000+-0-+0 000000+000 000000 A. CHARGE CLUSTERS. Positive charge clusters (cmin = 11/30 or 15/45 or 18/60): none Negative charge clusters (cmin = 12/30 or 15/45 or 19/60): none Mixed charge clusters (cmin = 18/30 or 24/45 or 29/60): none B. HIGH SCORING (UN)CHARGED SEGMENTS. There are no high scoring positive charge segments. There are no high scoring negative charge segments. There are no high scoring mixed charge segments. There are no high scoring uncharged segments. C. CHARGE RUNS AND PATTERNS. pattern (+)| (-)| (*)| (0)| (+0)| (-0)| (*0)|(+00)|(-00)|(*00)| (H.)|(H..)| lmin0 6 | 6 | 8 | 44 | 11 | 11 | 15 | 13 | 14 | 18 | 7 | 9 | lmin1 7 | 7 | 10 | 53 | 13 | 13 | 18 | 16 | 16 | 22 | 8 | 11 | lmin2 8 | 9 | 12 | 59 | 15 | 15 | 20 | 18 | 19 | 24 | 10 | 12 | (Significance level: 0.010000; Minimal displayed length: 6) (*00) 27(0,0,2); at 1951-1977: FTDGADGDLADLHRASENLRQEGVRAL (3. quartile) 00-00-0-00-00+00-00+0-00+00 Run count statistics: + runs >= 4: 0 - runs >= 4: 0 * runs >= 6: 0 0 runs >= 29: 0 -------------------------------------------------------------------------------- DISTRIBUTION OF OTHER AMINO ACID TYPES 1. HIGH SCORING SEGMENTS. There are no high scoring hydrophobic segments. There are no high scoring transmembrane segments. 2. SPACINGS OF C. H2N-13-C-201-C-558-C-1049-C-9-C-41-C-151-C-C-3-C-1-C-50-C-289-C-9-C-1-C-C-5-C-42-C-144-C-2-C-3-C-5-C-166-C-71-C-222-C-51-C-8-C-15-C-7-C-12-C-3-C-15-COOH 2*. SPACINGS OF C and H. (additional deluxe function for ALEX) H2N-3-H-1-H-7-C-9-H-29-H-22-H-10-H-16-H-23-H-23-H-42-H-10-H-8-C-1-H-114-H-57-H-34-H-75-H-131-H-70-H-24-H-11-H-32-C-117-H-112-H-10-H-271-H-164-H-88-H-172-H-8-H-4-H-86-H-3-H-3-C-9-C-37-H-3-C-43-H-28-H-12-H-29-H-35-C-C-3-C-1-C-50-C-289-C-9-C-1-C-C-5-C-42-C-124-H-19-C-H-1-C-3-C-5-C-62-H-8-H-94-C-71-C-16-H-153-H-19-H-26-H-4-C-10-H-40-C-8-C-15-C-7-C-12-C-3-C-15-COOH -------------------------------------------------------------------------------- REPETITIVE STRUCTURES. A. SEPARATED, TANDEM, AND PERIODIC REPEATS: amino acid alphabet. Repeat core block length: 6 Aligned matching blocks: [ 241- 248] ADIIFLID [1435-1442] ADIVFLID with superset: [ 38- 43] ADIIFL [ 241- 246] ADIIFL [1435-1440] ADIVFL [1638-1643] ADIVFL ______________________________ [ 339- 354] GSRVEEGVPQVLVLIS [1329-1344] GSRIEEGVPQFLVLIS with superset: [ 343- 351] EEGVPQVLV [1333-1341] EEGVPQFLV [1537-1545] EDGVPQHLV ______________________________ [ 443- 455] KRDIVFLVDGS_SA [1231-1244] KRDVVFLIDGSQSA with superset: [ 447- 453] VFLVDGS [1031-1037] VFLLDGS [1235-1241] VFLIDGS [1641-1647] VFLLDGS ______________________________ [ 556- 561] ITGGKS [1750-1755] ITGGKS ______________________________ [ 590- 602] AELEEIAFDSSLV [ 784- 796] AELEQIAFNPSLV with superset: [ 590- 595] AELEEI [ 784- 789] AELEQI [ 981- 986] AELEQI ______________________________ [ 637- 651] KRDIIFLLDGSAN_VG [ 835- 850] KRDILFLFDGSANLVG ______________________________ [ 928- 940]-( -10)-[ 931- 940] [ ]--------[1123-1134] [1528-1540]-( -10)-[1531-1542] [ 928- 940] FVKSAGSRIEDGV [1528-1540] FVKSAGSRIEDGV [ 931- 940] SAGSRIEDGV [1123-1134] SAGSRITEGVPQ [1531-1542] SAGSRIEDGVPQ ______________________________ [2275-2282] PGEPGPKG [2316-2323] PGYPGPKG with superset: [2275-2280] PGEPGP [2316-2321] PGYPGP [2358-2363] PGYPGP ______________________________ [2443-2448] ARVAVV [2662-2667] ARVAVV ______________________________ [2915-2929] AKPVAAKPVATKTAT [2974-2983] AKPAATKP_AT with superset: [2915-2922] AKPVAAKP [2942-2949] AKPVAAKP [2959-2966] AKPVATKP [2974-2981] AKPAATKP ______________________________ Simple tandem repeat: [2870-2875] PV_TTTK [2876-2881] PV_TTTK [2882-2888] PVTTTTK [2889-2895] PVTTTTK [2896-2898] PVT B. SEPARATED AND TANDEM REPEATS: 11-letter reduced alphabet. (i= LVIF; += KR; -= ED; s= AG; o= ST; n= NQ; a= YW; p= P; h= H; m= M; c= C) Repeat core block length: 10 Aligned matching blocks: [ 37- 47] ss-iiiii-oo [1434-1444] ss-iiiii-oo ______________________________ [ 242- 254] -iiiii-sonnos [1233-1244] -iiiii-so_nos ______________________________ [ 332- 361] nhio+ssso+i--sipniiiiiosspoo-- [ 729- 757] nhio-ssso+i+-hipniiiiioss_no-- ______________________________ [ 334- 363] io+ssso+i--sipniiiiiosspoo--i+ [1121-1149] io_osso+io-sipniiiiios-+os--i+ with superset: [ 351- 361] iiiosspoo-- [ 554- 564] iiioss+oi-- [1137-1147] iiios-+os-- [1341-1351] iiioos+o--- [1545-1555] iiiiss+on-- [1748-1758] iiioss+oi-- ______________________________ [ 440- 468] -i__n++-iiiii-soosisisninsi+-ii [ 632- 662] -ihon++-iiiii-sosnis+onipai+-ii ______________________________ [ 520- 521]-( 3)-[ 525- 537]-( 3)-[ 541- 542]-( 4)-[ 547- 583] [1511-1512]-( 3)-[1516-1528]-( 3)-[1532-1533]-( 4)-[1538-1572] [ 525- 537] ososi-ii+nnii [1516-1528] os+si-iis+nii [ 547- 583] -sip+iiiiioss+oi--ionpsn-i++ooimsisis [1538-1572] -sipnhiiiiiss+on--io+isnii+oosi__iois ______________________________ [ 637- 650] ++-iiiii-sosni [ 835- 848] ++-iiiii-sosni [1637-1650] +s-iiiii-soini with superset: [ 443- 453] ++-iiiii-so [ 637- 647] ++-iiiii-so [ 835- 845] ++-iiiii-so [1231-1241] ++-iiiii-so [1637-1647] +s-iiiii-so ______________________________ [ 637- 662] ++-iiiii-sosnis+onipai+-ii [ 835- 859] ++-iiiii-sosni_isnipii+-ii ______________________________ [ 675- 689] ni+isiinio-opio [2525-2539] ni+-sii+io-ssio with superset: [ 278- 288] ni+isiinio- [ 675- 685] ni+isiinio- [2525-2535] ni+-sii+io- ______________________________ [1112-1113]-( 3)-[1117-1147] [1316-1317]-( 3)-[1321-1350] [1117-1147] +niiioosso+io-sipniiiiios-+os-- [1321-1350] +nii++piso+i--sipniiiiioos+o_-- with superset: [ 927- 940] iii+osso+i--si [1119-1132] iiioosso+io-si [1323-1336] ii++piso+i--si [1527-1540] iii+osso+i--si and: [1119-1138] iiioosso+io-sipni_iii [1323-1342] ii++piso+i--sipniiii [1527-1547] iii+osso+i--sipnhiiii -------------------------------------------------------------------------------- MULTIPLETS. A. AMINO ACID ALPHABET. 1. Total number of amino acid multiplets: 191 (Expected range: 150--231) 2. Histogram of spacings between consecutive amino acid multiplets: (1-5) 54 (6-10) 47 (11-20) 41 (>=21) 50 3. Clusters of amino acid multiplets (cmin = 11/30 or 14/45 or 17/60): none 4. Long amino acid multiplets (>= 5; Letter/Length/Position): L/5/746 B. CHARGE ALPHABET. 1. Total number of charge multiplets: 70 (Expected range: 45-- 96) 30 +plets (f+: 10.9%), 40 -plets (f-: 11.4%) Total number of charge altplets: 73 (Critical number: 104) 2. Histogram of spacings between consecutive charge multiplets: (1-5) 3 (6-10) 10 (11-20) 12 (>=21) 46 -------------------------------------------------------------------------------- PERIODICITY ANALYSIS. A. AMINO ACID ALPHABET (core: 4; !-core: 6) Location Period Element Copies Core Errors 26- 29 1 Q 4 4 0 746- 750 1 L 5 5 0 970-1009 10 P......... 4 4 0 1055-1074 5 V.... 4 4 0 1870-1893 6 S..... 4 4 0 2038-2163 3 G.. 42 42 ! 0 2168-2302 3 G.. 45 45 ! 0 2302-2373 3 G.. 24 24 ! 0 2867-2896 6 TT.... 5 5 /0/1/././././ 2882-2909 7 PVT.... 4 4 /0/1/1/././././ 2884-2887 1 T 4 4 0 2891-2894 1 T 4 4 0 2906-2930 5 KP... 5 5 /0/1/./././ 2941-2960 5 AA.P. 4 4 /0/1/./1/./ 2956-2959 1 A 4 4 0 2961-2990 5 P...K 6 6 ! /0/./././2/ 3080-3083 1 P 4 4 0 B. CHARGE ALPHABET ({+= KR; -= ED; 0}; core: 5; !-core: 7) and HYDROPHOBICITY ALPHABET ({*= KRED; i= LVIF; 0}; core: 6; !-core:11) Location Period Element Copies Core Errors 256- 275 2 i. 9 7 1 258- 299 7 i.....0 6 6 /0/./././././2/ 309- 338 5 i0..0 6 6 /0/2/././2/ 402- 464 9 i......0. 7 7 /0/././././././2/./ 552- 611 10 i...0..00. 6 6 /0/./././1/././1/2/./ 940- 948 1 i 8 6 1 1030-1089 10 i.0....... 6 6 /0/./2/./././././././ 1641-1682 7 i0...*0 6 6 /0/1/./././2/1/ 1773-1820 8 i.0.0.0. 6 6 /0/./2/./1/./1/./ 1808-1831 4 i0*0 6 6 /0/1/1/0/ 1979-1996 3 i.. 6 6 0 1986-2015 5 i.... 6 6 0 2094-2210 9 *00.0..0. 12 7 /1/4/4/./2/././2/./ 2136-2150 3 +0- 5 5 /0/0/1/ 2738-2743 1 i 6 6 0 2906-2935 5 +0000 6 6 0 2960-2989 5 +0000 6 6 /0/0/1/0/1/ -------------------------------------------------------------------------------- SPACING ANALYSIS. Location (Quartile) Spacing Rank P-value Interpretation 48-2602 (2.) W(2554)W 1 of 7 0.0004 large 1. maximal spacing 216- 775 (1.) C( 559)C 2 of 31 0.0010 large 2. maximal spacing 775-1825 (2.) C(1050)C 1 of 31 0.0002 large 1. maximal spacing 1363-1446 (2.) G( 83)G 2 of 304 0.0017 large 2. maximal spacing 1993-2564 (3.) H( 571)H 1 of 46 0.0057 large maximal spacing 2021-2111 (3.) L( 90)L 2 of 284 0.0012 large 2. maximal spacing 2028-2208 (3.) A( 180)A 1 of 234 0.0002 large 1. maximal spacing 2185-2295 (3.) D( 110)D 2 of 180 0.0257 large 2. maximal spacing 2187-2301 (3.) V( 114)V 1 of 296 0.0036 large maximal spacing 2259-2364 (3.) A( 105)A 2 of 234 0.0017 large 2. maximal spacing 2602-2838 (4.) W( 236)W 2 of 7 0.9991 small 2. maximal spacing 2842-2967 (4.) -( 125)- 1 of 363 0.0001 large 1. maximal spacing 2842-3020 (4.) D( 178)D 1 of 180 0.0043 large 1. maximal spacing 2848-2991 (4.) L( 143)L 1 of 284 0.0003 large 1. maximal spacing 2852-3015 (4.) G( 163)G 1 of 304 0.0000 large 1. maximal spacing 3041-3101 (4.) -( 60)- 2 of 363 0.0215 large 2. maximal spacing ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ Start with Pfam (from /data/patterns/pfam) hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/patterns/pfam/Pfam Sequence file: tem12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- vwa von Willebrand factor type A domain 1909.0 0 11 Collagen Collagen triple helix repeat (20 copi 193.5 3.4e-54 5 Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhi 94.1 2e-29 1 FARP FMRFamide related peptide family 11.1 19 1 fn3 Fibronectin type III domain 2.4 1.3 1 formyl_transf Formyl transferase 2.0 21 1 Ribosomal_L5 Ribosomal protein L5 1.9 78 1 UNG Uracil-DNA glycosylase 0.7 59 1 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 0.5 77 1 GST Glutathione S-transferases. 0.4 43 1 catalase Catalase -0.3 53 1 Leptin Leptin -0.8 86 1 A2M_N Alpha-2-macroglobulin family N-termin -0.9 32 1 Rhabd_nucleocap Rhabdovirus nucleocapsid protein -1.4 89 1 PDEase 3'5'-cyclic nucleotide phosphodiester -1.5 61 1 Seedstore_11s 11S plant seed storage protein -1.5 97 1 COLFI Fibrillar collagen C-terminal domain -1.8 83 1 actin Actin -2.8 91 1 RecR RecR protein -8.0 17 1 Tryp_mucin Mucin-like glycoprotein -24.8 53 1 ATP-synt_F ATP synthase (F/14-kDa) subunit -30.4 12 1 DAGKc Diacylglycerol kinase catalytic domai -41.7 52 1 Peptidase_S24 Peptidase family S24 -48.7 33 1 Bac_globin Protozoan/cyanobacterial globin -56.9 5.2 1 ThiF_family ThiF family -62.4 92 1 Luteo_Vpg Luteovirus putative VPg genome linked -66.4 60 1 DUF58 Protein of unknown function DUF58 -70.6 57 1 HypB_UreG HypB/UreG nucleotide-binding domain -79.0 45 1 GFO_IDH_MocA Oxidoreductase family -85.2 65 1 PRAI N-(5'phosphoribosyl)anthranilate (PRA -87.6 18 1 Keratin_B2 Keratin, high sulfur B2 protein -94.0 44 1 adh_short short chain dehydrogenase -100.5 59 1 US22 US22 like -120.1 58 1 UPF0023 Uncharacterized protein family UPF002 -129.6 76 1 CorA CorA-like Mg2+ transporter protein -134.3 4 1 Fibrillarin Fibrillarin -137.0 74 1 PYC_OADA Conserved carboxylase domain -138.4 96 1 Phage_F Capsid protein (F protein) -165.1 65 1 HrcA HrcA protein -173.0 19 1 DUF102 Protein of unknown function DUF102 -243.7 46 1 Dwarfin Dwarfin -266.5 71 1 Como_LCP Large coat protein -290.2 78 1 Peptidase_M17 Cytosol aminopeptidase family -294.3 95 1 Worm_family_8 Putative membrane protein -306.3 68 1 TrehaloseP_syn Trehalose-6-phosphate synthase domain -317.6 50 1 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzy -333.5 83 1 4A_glucanotrans 4-alpha-glucanotransferase -336.4 49 1 Carn_acyltransf Carnitate acyltransferase -376.0 48 1 MCM MCM2/3/5 family -376.7 10 1 Adenine_deam Adenine deaminase -398.9 77 1 adeno_100 Late 100kD protein -510.7 29 1 Patched Patched family -606.7 96 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- A2M_N 1/1 1 18 [. 1 20 [. -0.9 32 Seedstore_11s 1/1 1 29 [. 1 29 [. -1.5 97 DAGKc 1/1 78 210 .. 1 159 [] -41.7 52 vwa 1/11 39 213 .. 1 200 [] 200.2 3.3e-56 Fibrillarin 1/1 47 215 .. 1 232 [] -137.0 74 vwa 2/11 242 415 .. 1 200 [] 192.6 6e-54 Rhabd_nucleocap 1/1 423 438 .. 1 16 [. -1.4 89 DUF102 1/1 207 448 .. 1 354 [] -243.7 46 Como_LCP 1/1 192 465 .. 1 365 [] -290.2 78 Cys_Met_Meta_PP 1/1 351 563 .. 1 428 [] -333.5 83 Adenine_deam 1/1 189 584 .. 1 577 [] -398.9 77 vwa 3/11 445 620 .. 1 200 [] 213.5 3.2e-60 adeno_100 1/1 297 724 .. 1 625 [] -510.7 29 catalase 1/1 784 796 .. 304 316 .. -0.3 53 vwa 4/11 639 812 .. 1 200 [] 227.9 1.5e-64 vwa 5/11 837 1009 .. 1 200 [] 176.0 6.2e-49 GST 1/1 1029 1058 .. 182 207 .] 0.4 43 Bac_globin 1/1 1061 1151 .. 1 118 [] -56.9 5.2 vwa 6/11 1029 1201 .. 1 200 [] 198.1 1.4e-55 COLFI 1/1 1324 1331 .. 1 9 [. -1.8 83 HypB_UreG 1/1 1250 1332 .. 1 147 [] -79.0 45 vwa 7/11 1233 1404 .. 1 200 [] 207.4 2.2e-58 PYC_OADA 1/1 1286 1426 .. 1 225 [] -138.4 96 Peptidase_M17 1/1 1213 1455 .. 1 427 [] -294.3 95 DUF58 1/1 1351 1511 .. 1 192 [] -70.6 57 PRAI 1/1 1405 1562 .. 1 216 [] -87.6 18 vwa 8/11 1436 1609 .. 1 200 [] 223.7 2.7e-63 ATP-synt_F 1/1 1572 1638 .. 1 106 [] -30.4 12 PDEase 1/1 1648 1666 .. 95 113 .. -1.5 61 UPF0023 1/1 1516 1711 .. 1 256 [] -129.6 76 Ribosomal_L5 1/1 1718 1740 .. 1 31 [. 1.9 78 vwa 9/11 1639 1812 .. 1 200 [] 201.4 1.4e-56 GFO_IDH_MocA 1/1 1676 1867 .. 1 264 [] -85.2 65 Phage_F 1/1 1467 1892 .. 1 430 [] -165.1 65 adh_short 1/1 1745 1901 .. 1 203 [] -100.5 59 ThiF_family 1/1 1769 1905 .. 1 151 [] -62.4 92 UNG 1/1 1937 1949 .. 10 22 .. 0.7 59 Collagen 1/5 2038 2097 .. 1 60 [] 48.4 1.6e-10 Collagen 2/5 2104 2163 .. 1 60 [] 51.6 1.7e-11 Collagen 3/5 2174 2233 .. 1 60 [] 37.6 2.9e-07 Collagen 4/5 2234 2293 .. 1 60 [] 35.3 1.4e-06 Collagen 5/5 2314 2373 .. 1 60 [] 52.6 8.6e-12 HrcA 1/1 1738 2406 .. 1 343 [] -173.0 19 Carn_acyltransf 1/1 1396 2430 .. 1 679 [] -376.0 48 Tryp_mucin 1/1 2013 2500 .. 1 169 [] -24.8 53 Patched 1/1 1302 2522 .. 1 957 [] -606.7 96 formyl_transf 1/1 2509 2529 .. 1 21 [. 2.0 21 vwa 10/11 2402 2581 .. 1 200 [] 87.5 2.7e-22 actin 1/1 2570 2583 .. 184 197 .. -2.8 91 Dwarfin 1/1 1791 2591 .. 1 652 [] -266.5 71 zf-C3HC4 1/1 2584 2594 .. 1 17 [. 0.5 77 RecR 1/1 2565 2609 .. 1 42 [] -8.0 17 Worm_family_8 1/1 1986 2627 .. 1 404 [] -306.3 68 4A_glucanotrans 1/1 1220 2630 .. 1 585 [] -336.4 49 Leptin 1/1 2645 2655 .. 136 146 .] -0.8 86 US22 1/1 2400 2661 .. 1 321 [] -120.1 58 TrehaloseP_syn 1/1 1983 2757 .. 1 513 [] -317.6 50 MCM 1/1 1456 2764 .. 1 615 [] -376.7 10 CorA 1/1 1893 2768 .. 1 324 [] -134.3 4 Peptidase_S24 1/1 2664 2776 .. 1 132 [] -48.7 33 vwa 11/11 2619 2809 .. 1 200 [] 44.9 1.8e-09 FARP 1/1 2804 2814 .. 1 11 [] 11.1 19 Keratin_B2 1/1 2862 2972 .. 1 177 [] -94.0 44 fn3 1/1 2986 3068 .. 1 84 [] 2.4 1.3 Luteo_Vpg 1/1 3058 3121 .. 1 105 [] -66.4 60 Kunitz_BPTI 1/1 3111 3161 .. 1 62 [] 94.1 2e-29 Alignments of top-scoring domains: A2M_N: domain 1 of 1, from 1 to 18: score -0.9, E = 32 *->MgkdrllqlcLwllLllLlf<-* M+k+r l L+ + +l+l+ tem12gi|31 1 MRKHRH--LPLVAVFCLFLS 18 Seedstore_11s: domain 1 of 1, from 1 to 29: score -1.5, E = 97 *->MAkklasl.lvfsLcLlll.fngclAqqeQQ<-* M k ++l+lv+ +cL+l++f + Aqq QQ tem12gi|31 1 M-RKHRHLpLVAVFCLFLSgFPTTHAQQ-QQ 29 DAGKc: domain 1 of 1, from 78 to 210: score -41.7, E = 52 *->pllVfvNPkSGggqgekelaseskllqkfrelLnprqVfdltk.tgg +lV +N+++ ++ + + ++e+L+++ +++t+ tem12gi|31 78 FALVQFNGNPHTEFLL-------NTYRTKQEVLSHISNMSYIGgTNQ 117 pavglel.frdlpdfleqsdqkgddrvlvcGGDGTvgwVlnaldklelpl + +gle+ + + + GDG + ++ d + ++ tem12gi|31 118 TGKGLEYiMQSHLTK----------AAGSRAGDGVPQVIVVLTDGHSKDG 157 qcqvedrefpkPPvavlPlGTGNdLarvLgwgggydga.qlinekllkil +P a l N +a +g + +ga + i++ +l++ tem12gi|31 158 L---------ALPSAELKSADVNVFA--IGVEDADEGAlKEIASEPLNMH 196 gdaleeadtvmldrW<-* + +l e+ t +d + tem12gi|31 197 MFNL-ENFTSLHDIV 210 vwa: domain 1 of 11, from 39 to 213: score 200.2, E = 3.3e-56 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg Di+FL+D+S+ ig+ F++v++F+++vv +L vg+ + +++ tem12gi|31 39 DIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGE-ND-----FHFA 79 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq lvQ+++n++tE f+ln+y++k evl+ ++++ y+gg + Tg++L tem12gi|31 80 LVQFNGNPHTE--FLLNTYRTKQEVLSHISNMS----YIGGTNQTGKGLE 123 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln y + + t+a+GsR a g+p+v+VvlTDG s d+ + +++ tem12gi|31 124 YIMQSHLTKAAGSR----AGDGVPQVIVVLTDGHSKDG------LALPSA 163 elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl elk a+v+vfaiGv +ad + L+eIAs+p ++h f++++f++L+++ tem12gi|31 164 ELKS-ADVNVFAIGVEDAD---EGALKEIASEPLnMHMFNLENFTSLHDI 209 qelL<-* + L tem12gi|31 210 VGNL 213 Fibrillarin: domain 1 of 1, from 47 to 215: score -137.0, E = 74 *->kkvivephrnleGVfigkGkedaLvTKnlvpGesVYgEKrisveete +i e h +l f+ + K+l++Ge + +++ ++ tem12gi|31 47 SWTIGEEHFQLVREFLYDV------VKSLAVGENDFHFALVQFNGNP 87 kiEYRvWNPfrSKLAAaIigGlkeipIkpGsKVLYLGAAsGTTvSHVsDi E+ + N +r K ++ ++++ Y G+ + T tem12gi|31 88 HTEF-LLNTYRTK--QEVLSHISNMS--------YIGGTNQT-------- 118 vgPeGiVYAVEFShRsgRdLlemakkRtNviPIieDArkPqkYrmlVgmV g +G+ Y + Sh L +a R +D V++V tem12gi|31 119 -G-KGLEY-IMQSH-----LTKAAGSRA------GDG---------VPQV 145 DvIFaDVAQPdQArIlalNAkaFLkngGhvvISIKAncIDsTaepevVFa v+ D ++G ++ S ++ D+ + V tem12gi|31 146 IVVLTDGH----------------SKDGLALPSAELKSADVNVFAIGVED 179 revekLkeegfKpve..qltlEPfErDHavvVGvyrg<-* ++ Lke p+ + +lE f H + VG tem12gi|31 180 ADEGALKEIASEPLNmhMFNLENFTSLHDI-VGNLVS 215 vwa: domain 2 of 11, from 242 to 415: score 192.6, E = 6e-54 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg Di+FL+DGS++ gs nF+ ++dF++++ e+L +g ++ +rVg tem12gi|31 242 DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGT-QQ-----IRVG 282 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq +vQ+Sd++rt f+l++y++k+ vl a++++ + gg+ +n+g AL+ tem12gi|31 283 VVQFSDEPRTM--FSLDTYSTKAQVLGAVKALG---FAGGELANIGLALD 327 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln +vv+n+ft+a GsR eeg+p+vlV++++G+s+d ir + tem12gi|31 328 FVVENHFTRAGGSR----VEEGVPQVLVLISAGPSSDE------IRYGVV 367 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +lk+ a+v f++G+ a + +eL+ IA+++ + vf v f++ +lq tem12gi|31 368 ALKQ-ASVFSFGLGAQAASR---AELQHIATDD-NLVFTVPEFRSFGDLQ 412 elL<-* e+L tem12gi|31 413 EKL 415 Rhabd_nucleocap: domain 1 of 1, from 423 to 438: score -1.4, E = 89 *->nnqvvsvklPanedPv<-* + +++k+P+++++v tem12gi|31 423 AQRHIVLKPPTIVTQV 438 DUF102: domain 1 of 1, from 207 to 448: score -243.7, E = 46 *->lkkrkslFvcVlGnTETslIpGIsvAGatPeliKyTP..iADaEllf + + l cV ++ AG t l +T++++AD +l+ tem12gi|31 207 HDIVGNLVSCVHSSVSPE------RAGDTETLKDITAqdSADIIFLI 247 ygKpltldtiPltpleGeAAPTPAvITkAaveLkn...iPvlvvdsGlfv g +G+ + AvI +v L+++ +i ++ G tem12gi|31 248 DG---------SNN-TGS--VNFAVILDFLVNLLEklpIGTQQIRVG--- 282 kPkiPyInidekpgrdiregrAlplaeveel.yerGl.llGkqLsklHAa ++ + +p ++ + + ++l+ ++l+ G +L+ + tem12gi|31 283 -----VVQFSDEPRTMFSLDTYST--KAQVLgAVKALgFAGGELANI--- 322 elLVvGESvPGGTTTAlGVLlALGyDAeGkVSSSsPeNPheLKrkVVreg +L +D VV+ tem12gi|31 323 ---------------------GLALDF------------------VVENH 333 LeraGIEkGdlksepfeVleAVGDPMipvVAGlAlgssesnkpViLAGGT + raG s + e + ++ V+ ++++ s + i G tem12gi|31 334 FTRAG------GSRVEEGVP------QVLVL---ISAGPS-SDEIRYG-- 365 QMlAVlALikalgkqqNevldfsrlvIATTkfVaeDasgDlkgiaeqiGd V AL +a v++f + + A + + l ia + tem12gi|31 366 ----VVALKQA------SVFSFGLGAQAA-------SRAELQHIATDD-N 397 islLvsdldFskSkypGLreYekGfVKEGVGAGGmavlAllagNiepEkv v+++ ++ L+e + + VG +a ++ + +p+ v tem12gi|31 398 LVFTVPEFR----SFGDLQEKLLPYI---VG---VAQRHIVLK--PPTIV 435 rEkIENklyerlle<-* IE + ++ tem12gi|31 436 TQVIE-VNKRDIVF 448 Como_LCP: domain 1 of 1, from 192 to 465: score -290.2, E = 78 *->EtdLFkLSLDDtsspsgslLdtklaqskvliPKnmvGGTvLrsayLa ++ +L ++ s+ + + + + + + + +G T + + a tem12gi|31 192 PLNMHMFNLENFTSLHD-IVGNLVSCVHSSVSPERAGDTETLKDITA 237 dvLskssfRatvaLqRTHvItGkIkvvatinvaeNTGigLAiafNSGirG ++ + L+ + tG+ + +N tem12gi|31 238 -----QDSADIIFLIDGSNNTGSVNFAVILDFLVN------------LLE 270 aNastDiYttcSQDailWNPACeKavefsFNPNPCgDaWslefLrrtkfh + ++ Q+ + +v+fs P + sl +tk+ tem12gi|31 271 K------LPIGTQQIRV------GVVQFSDEPR---TMFSLDT-YSTKAQ 304 svcvvtCVtGWtatPltDvaitldWyisr..........eiCvPkiytvl ++v + G ++ l + + ld ++++ ++ ++++ e+ vP + + tem12gi|31 305 VLGAVKAL-GFAGGELANIGLALDFVVENhftraggsrvEEGVPQVLVLI 353 dpqpafmlNRWMGkLsFPQGservvkrMPLsIGGGAGakkaiLmNmpNAv +++p+ R G + +Q +v ++ L G + a a L tem12gi|31 354 SAGPSSDEIRY-GVVALKQA---SVFSFGL---GAQAASRAEL------- 389 lSLwRYFrGD..LvFEvtKMSSPYIkaTvsFfiAFGdLsddvgNMQIlEs + + D++LvF Tv f FGdL ++ tem12gi|31 390 ----QHIATDdnLVF------------TVPEFRSFGDLQEKLL------- 416 FPHklvqFsevqertRtitFskeEFltAWSTQVrpattlrgDGCPYLYAl P + + q +++ + + + V+ ++ + tem12gi|31 417 -PYIV---GVAQRHI-VLKPPT---IVTQVIEVNKRDI----------VF 448 vHRDSvsSTieGdFvlGVkLlliknicaiG<-* + D++s +l++ n++ai tem12gi|31 449 LV-DGSS------------ALGLANFNAIR 465 Cys_Met_Meta_PP: domain 1 of 1, from 351 to 563: score -333.5, E = 83 *->aTlavHaGqrpdeddqtGAvvvPIYqtSTYkfdtveegaalfagehg +++ aG+++de + +G vv++ q+S + f g tem12gi|31 351 --VLISAGPSSDE-IRYG--VVALKQASVFSFG------------LG 380 GeyeYSRsgNPTrdaLEeriAaLEgGeaalAfaSGmAAifaallaLLkaG + +AA+ a l+ + + tem12gi|31 381 A----------------------------------QAAS-RAELQHIATD 395 DhvVatddlYGGTyrlfekvlkrnfGievtfVDtsdldaleaAikPnTKa D++V t +++ l ek+l+ G+ +++ + kP T tem12gi|31 396 DNLVFTVPEFRSFGDLQEKLLPYIVGVAQRHIVL----------KPPT-- 433 VyvETPtNPllkvvDIeaiakiAkkhg..gvlvvVDNTFasPGyLqrPLe i+ + ++++++++ VD a + ++++++ tem12gi|31 434 ------------------IVTQVIEVNkrDIVFLVDGSSALGLANFNAIR 465 LGADiVvHSATKYigGHsDVvgGvvvvngreelakrlaflqqFePeGYHG D ++ v+ r e+++ q tem12gi|31 466 ------------------DFIAKVIQ---RLEIGQD--LIQ--------- 483 lFievqGnlAYilrvRtellnatGavlsPfDAwLllRGLKTLgLRmerhq tem12gi|31 - -------------------------------------------------- - eNAlklAefLekHPkVekVyYPGLpSHPqHelAkkQmkGfGGGgmlSFel ++A++ + V P f + F + tem12gi|31 484 ---VAVAQY--AD-TVR----P----------------EF-Y-----FNT 501 kggldaakrreaakkfldnlk.LftlAeSLGGvESLishPAtMTHasipp +++ ++ + ++k+L A + G + ++ + +++ a++ tem12gi|31 502 H--PTK----REVITAVRKMKpLDGSALYTGSALDFVRNNLFTSSAGY-- 543 EeReaaGitdgLiRlSVGiEDvdDLiaDLeqALe<-* R+a Gi++ L+ + G L+ tem12gi|31 544 --RAAEGIPKLLVLITGG------------KSLD 563 Adenine_deam: domain 1 of 1, from 189 to 584: score -398.9, E = 77 *->ikNakIlDvyngeiikgnIaIaggrIagVglndeisgrieKiaEeik + + + +n e + I g +++V + s + + E +k tem12gi|31 189 ASEPLNMHMFNLENFTSLHDIVGNLVSCVH--SSVSPERAGDTETLK 233 tIDaegkyivPGFIDaHiHIESSmltPseFAkaVlphGtttvVsDPHEIA I a + + +ID+ S ++FA v+ D +++ tem12gi|31 234 DITAQDSADIIFLIDG-----SNNTGSVNFA----------VILD--FLV 266 NVsGkdGilfMLneAkktplkfYfmvP..SCVPAtsepfEtsGAvltaed N L+ + +++ ++v + S+ P t f ++ +a + tem12gi|31 267 N---------LLEKLPIGTQQIRVGVVqfSDEPRT--MFSLDTYSTKAQV 305 ikellelddVlgLAEmMdyPgVisgDdemLkKieaArkqnKriDGHaPGL + + l +++E + i +A+ +++ H+ + tem12gi|31 306 LGAVKALG--FAGGELAN--------------IGLAL--DFVVENHFTRA 337 sgkeLnkYisaGissDHEsvslEEaleKLrLGMkvMiREGSaAkNlraLl +g EE+ + +l tem12gi|31 338 GGSRV-----------------EEG--------------------VPQVL 350 plinEkgkkncdslmlctDDahpndllsEGhinhiiRrAieeGvdpidvA li+ a p + i +Gv++++ tem12gi|31 351 VLIS----------------AGPSSDE------------IRYGVVALK-- 370 yqmasiNpAeyYGldtyLGliaPGrdADl..vileDlrnfkVkkVlvkGr A + + G+ a++r A l+++ ++D + f+V + G tem12gi|31 371 -------QASVFSFGL--GAQAASR-AELqhIATDDNLVFTVPEFRSFGD 410 pvredglallkrfnktqkaPwkklnvskkpvsalnKqDfkmqGiDldegq + e l + + + ++ k +++ + ++ nK D+ + +D+ ++ tem12gi|31 411 -LQEKLLPYIVGVAQR-HIVLKPPTIVTQVIE-VNKRDIVFL-VDGSSA- 455 frirVIkvidnqlITeeliisaeveesefqldteeDilkiaVleRHkrsg + n++ + i+ v+ l + D+ +aV + ++ tem12gi|31 456 ----LGLANFNAI--RDFIA--KVIQ---RLEIGQDLIQVAVAQ-YADTV 493 kigkGlikGFGlkeGAiAstvaHDSHNIiavGvndedmalAVNrlkeiGG ++ F ++ +H + + AV ++k + G tem12gi|31 494 RP------EFYFN--------THPT---------KREVITAVRKMKPLDG 520 GLvaaknGevlheLPLPiAGlMSdesaerVaeklekLndkleevlGsrld a+ G l + l + ++ r ae++ kL ++++ G +ld tem12gi|31 521 --SALYTGSALDFVR---NNLFTSSAGYRAAEGIPKLLVLITG--GKSLD 563 dPflTLSFLsLpVIPeLKiTdrGLFDVekFqvvd<-* + +s p eLK + ++F++ + tem12gi|31 564 E-------ISQPAQ-ELKRSS-----IMAFAIGN 584 vwa: domain 3 of 11, from 445 to 620: score 213.5, E = 3.2e-60 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg DivFL+DGS+ +g +nF++++dF+ +v++rL++g+ d ++V+ tem12gi|31 445 DIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQ-DL-----IQVA 485 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq ++QY+d vr+E f++n++++k ev+ a++k++ ++ g+++ Tg+AL+ tem12gi|31 486 VAQYADTVRPE--FYFNTHPTKREVITAVRKMK---PLDGSALYTGSALD 530 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln +v++nlft ++G R a eg+pk+lV++T+G+s d i ++++ tem12gi|31 531 FVRNNLFTSSAGYR----AAEGIPKLLVLITGGKSLDE------ISQPAQ 570 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfea..Ldt elk+ +++ faiG ++ad ++eL+eIA++ vf+ f+a +L+ tem12gi|31 571 ELKR-SSIMAFAIGNKGAD---QAELEEIAFDS-SLVFIPAEFRAapLQG 615 lqelL<-* + + L tem12gi|31 616 MLPGL 620 adeno_100: domain 1 of 1, from 297 to 724: score -510.7, E = 29 *->dyldpfadvLlkHLeRQAmIlrdALqdaad.adppeklPlSVaelsr d+++ a + +A + a a +++ +++ tem12gi|31 297 DTYSTKAQ------------VLGAVK-ALGfAGGELA------NIGL 324 al....ErfLFnfPrVPpkrqsnGTCepePRLNFYPpFlvPEaLATYHiF al+ E++ F+ r r+++G vP +L + tem12gi|31 325 ALdfvvENH-FT--RAGGSRVEEG---------------VPQVLVL---- 352 FvNqkIPlSCkANRsgsDkllkLksgtsLpLdiPtleevmpkifeGLGsd + + +s++ + + l++ ++++ GLG tem12gi|31 353 -------------------ISAGPSSDEIRYGVVALKQA-SVFSFGLGA- 381 EvraaneLkdaqseNesedSkLV..eLk..gD............npRLav ++++++eL+ ++ ++ +++ +e ++ gD +++ + + R +v tem12gi|31 382 QAASRAELQHIATD---DNLVFTvpEFRsfGDlqekllpyivgvAQRHIV 428 lKsRclhVthFAYPALnLPPKvmktLme......tLlvk..rAqpnad.. lK PP + + ++e ++++ ++lv +++A ++a + tem12gi|31 429 LK----------------PPTIVTQVIEvnkrdiVFLVDgsSALGLANfn 462 .........sdeatpedgePvVsDeeLarwlkte..grsdPedtlkalee ++ + + + ++ +V ++ a+ + +e ++P + +++ tem12gi|31 463 airdfiakvIQRLEIGQDLIQVAVAQYADTVRPEfyFNTHPT-KREVITA 511 rRKl..vmaAvlyT.vqLecmqr.fFsspdmiKKlqEsLHYTFrHGYVkL RK++++ +++lyT+++L + ++F+s + ++ G kL tem12gi|31 512 VRKMkpLDGSALYTgSALDFVRNnLFTSSAGYRAAE---------GIPKL 552 ackisnveLSnlVTyhGitHENRLgqpvLHttLkgedrrDYvrDtIYLFL + i++ tem12gi|31 553 LVLITG-------------------------------------------- 558 vyTWQTAMGvWQQcLeeeNLkeleklLtknrrkLytgfdertiAkaLadi ++ L e+ + +r+ +A a+ + tem12gi|31 559 ----------------GKSLDEISQPAQELKRS-------SIMAFAIGNK 585 iFPeklLetlqrgALPDFtsQSqlqNFRsFILERSGIlpamcpaLPSDFV + Le+++ + +++ F+ tem12gi|31 586 GADQAELEEIAFD----------------------------SSLV---FI 604 PltFkEcPPpLWaHvYLLrLAnFLmnHgDyledveedesgegllecyCrC P F+ +P ++ + +gll tem12gi|31 605 PAEFRAAP---------------------LQGML------PGLL------ 621 NLCSPHRmlvhNtaLlnEilaIGTFEiqgPpdkdGkstpktLKLTPgLWt +P R+l ++ ++ ++ +i d++ ++ k t tem12gi|31 622 ---APLRTLSGTPEVHS-----NKRDIIFLLDGSANVG-K---------T 653 s.AYLRKFeseDYHpheikfYedqsk....ppkvpLtACVI........T + Y R F+ ++ i d+ + + ++++++ V++ + ++ +T tem12gi|31 654 NfPYVRDFVMNLVNSLDIG--NDNIRvglvQFSDTP---VTefslntyqT 698 qpeILAqLreIkkaREEFLLkKGkGVYLDPqTGEeLn<-* ++ IL Lr+ + L+ G+G +TG L+ tem12gi|31 699 KSDILGHLRQLQ-------LQGGSGL----NTGSALS 724 catalase: domain 1 of 1, from 784 to 796: score -0.3, E = 53 *->AEvEQaAFsPahl<-* AE EQ+AF+P+ + tem12gi|31 784 AELEQIAFNPSLV 796 vwa: domain 4 of 11, from 639 to 812: score 227.9, E = 1.5e-64 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg Di+FLlDGS ++g nF+ v+dFv+++v++Ld+g d+ +rVg tem12gi|31 639 DIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGN-DN-----IRVG 679 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq lvQ+Sd + tE f+ln+yq+k+++l l++++ +gg+g+nTg+AL tem12gi|31 680 LVQFSDTPVTE--FSLNTYQTKSDILGHLRQLQ---LQGGSGLNTGSALS 724 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln yv+ n+ftea GsRi+ e++p++l++lT+G+s d+ + +++n tem12gi|31 725 YVYANHFTEAGGSRIR----EHVPQLLLLLTAGQSEDS------YLQAAN 764 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +l + ag+ +f +G+ +a + +eL++IA++p v+ ++df++L+ l tem12gi|31 765 ALTR-AGILTFCVGASQANK---AELEQIAFNP-SLVYLMDDFSSLPALP 809 elL<-* ++L tem12gi|31 810 QQL 812 vwa: domain 5 of 11, from 837 to 1009: score 176.0, E = 6.2e-49 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg Di FL DGS ++ q F+ v+dF++++++ L+v p +r++ tem12gi|31 837 DILFLFDGSANLVGQ-FPVVRDFLYKIIDELNVKP-EG-----TRIA 876 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq ++QYSd+v++E ++++q+k e+l +++++ ++g+++n+g AL+ tem12gi|31 877 VAQYSDDVKVE--SRFDEHQSKPEILNLVKRMK---IKTGKALNLGYALD 921 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln y+ r++f +++GsR +e g+ ++lV+l++Grs+d+ ++ ++ tem12gi|31 922 YAQRYIFVKSAGSR----IEDGVLQFLVLLVAGRSSDR------VDGPAS 961 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +lk+ gv++f++ ++nad ++eL++I+ p ++++ ++ + + +l tem12gi|31 962 NLKQ-SGVVPFIFQAKNAD---PAELEQIVLSP-AFILAAESLPKIGDLH 1006 elL<-* +++ tem12gi|31 1007 PQI 1009 GST: domain 1 of 1, from 1029 to 1058: score 0.4, E = 43 *->dwlerldldp....eyPnLkawrervaarp<-* d ++ ld++++ ++++P Lk +++rv ++ tem12gi|31 1029 DVVFLLDGSEgvrsGFPLLKEFVQRVVESL 1058 Bac_globin: domain 1 of 1, from 1061 to 1151: score -56.9, E = 5.2 *->SLYdkLGGqeAveaVVdeFYkrIlADetvatfFsGTDMkkQrnkqva Gq v ++V + D t f + M kQ + tem12gi|31 1061 -------GQDRVRVAVVQY-----SDRTRPEFYLNSYMNKQDVVNAV 1095 FLAaaLGGPneYkGrnMkevHkglnPHlsnlHFdaVagHLadaLtelGVp +LGGP + +G+ + v + +s + +++ te GVp tem12gi|31 1096 RQLTLLGGPTPNTGAALEFVLRNIL--VSSA---------GSRITE-GVP 1133 aelitealaVvestrgdvlnk<-* li ++++ dv n tem12gi|31 1134 QLLIVLTADRSGD---DVRNP 1151 vwa: domain 6 of 11, from 1029 to 1201: score 198.1, E = 1.4e-55 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg D+vFLlDGS+ ++s +F++ K+Fv rvve+Ldvg+ d vrV+ tem12gi|31 1029 DVVFLLDGSEGVRS-GFPLLKEFVQRVVESLDVGQ-DR-----VRVA 1068 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggt.nTgaAL +vQYSd+ r+E f+ln y nk +v a++++ ++gg+t+nTgaAL tem12gi|31 1069 VVQYSDRTRPE--FYLNSYMNKQDVVNAVRQLT----LLGGPTpNTGAAL 1112 qyvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvl +v rn+ ++GsR + eg+p++l+vlT++rs dd +r ++ tem12gi|31 1113 EFVLRNILVSSAGSR----ITEGVPQLLIVLTADRSGDD------VRNPS 1152 nelkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtl ++k+ g ++++iG+Gnad e++ I++ p d++ +f++L t+ tem12gi|31 1153 VVVKR-GGAVPIGIGIGNAD---ITEMQTISFIP-DFAVAIPTFRQLGTV 1197 qelL<-* q+ + tem12gi|31 1198 QQVI 1201 COLFI: domain 1 of 1, from 1324 to 1331: score -1.8, E = 83 *->lksPeGksr<-* +k+P+G sr tem12gi|31 1324 FKRPLG-SR 1331 HypB_UreG: domain 1 of 1, from 1250 to 1332: score -79.0, E = 45 *->pnRarFeahgvlalnlgGsvGSGKTtLLerlieaLkk..delkiAVI +R tL+erl++ L + d+ ++AVI tem12gi|31 1250 YVR----------------------TLIERLVDYLDVgfDTTRVAVI 1274 tGDiyTkeD..AerLrktngvLpeGdriiqVeTGgcCHTAIRLDAsMvle + + D++Ae+L ++++ +e v tem12gi|31 1275 ----QFSDDpkAEFLLNAHSSKDE-----------------------VQN 1297 AieeLpergaaynalddldlLfIENVGNLvCPtffdlGedlkvvviSVtE A+++L ++ + + NVGN +e + ++ tem12gi|31 1298 AVQRLR--------PKGGRQI---NVGN--------ALEYVSRNIFKRPL 1328 GEDk<-* G ++ tem12gi|31 1329 GSRI 1332 vwa: domain 7 of 11, from 1233 to 1404: score 207.4, E = 2.2e-58 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg D+vFL+DGS+S g+ +F+ v+ +er+v+ Ldvg d+ +rV+ tem12gi|31 1233 DVVFLIDGSQSAGP-EFQYVRTLIERLVDYLDVGF-DT-----TRVA 1272 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq ++Q+Sd+++ E f+ln++++kdev a+q++r ++gg + n+g AL tem12gi|31 1273 VIQFSDDPKAE--FLLNAHSSKDEVQNAVQRLR---PKGGRQINVGNALE 1317 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln yv rn+f++ GsR +eeg+p++lV+++ G+s+d + ++ tem12gi|31 1318 YVSRNIFKRPLGSR----IEEGVPQFLVLISSGKSDDE------VVVPAV 1357 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq elk+ gv +f+i+ +nad +eeL++I+ p ++vf+vs+f++L+ l+ tem12gi|31 1358 ELKQ-FGVAPFTIA-RNAD---QEELVKISLSP-EYVFSVSTFRELPSLE 1401 elL<-* ++L tem12gi|31 1402 QKL 1404 PYC_OADA: domain 1 of 1, from 1286 to 1426: score -138.4, E = 96 *->VYvHeIPGGQLSNLefQAkelGLgDkfeEVleeyprVnedLGdipkP l++ +EV ++ r + pk tem12gi|31 1286 --------------------LNAHSSKDEVQNAVQRLR------PK- 1305 HVTPTSKiVGdlAvfnVlngltaaDvveraryldfPkSVvdflkGlyGrP G ++nV+n l +y++ ++++k rP tem12gi|31 1306 --------GG--RQINVGNAL---------EYVS-----RNIFK----RP 1327 PgWGfpEe....LrkkvLkgekdskpitcRPadlLePe...adldaikke g + Ee+ +++ + g+ + Pa +L+ + + a + +++ tem12gi|31 1328 LG-SRIEEgvpqFLVLISSGKS--DDEVVVPAVELK-QfgvAPFTIARNA 1373 leekgirevtdeDvLsYaLFPkVaeeFlefre.yGdlsvlptraflkgla +e + + +s +e+ ++ ++++l l+++ l++++ tem12gi|31 1374 DQEEL-VK------ISLS------PEYVFSVStFRELPSLEQKL-LTPIT 1409 igeEgeaGAAptefeVeieggkkTLiiklvaigelp<-* + e+ +k l+a p tem12gi|31 1410 TLTS--------------EQIQK-----LLASTRYP 1426 Peptidase_M17: domain 1 of 1, from 1213 to 1455: score -294.3, E = 95 *->gkagqsvvv.rplsglaskrillvglgtggskklaerqlgenaaail + ++q v++++p +g+++kr+ +v+l++g + +a + tem12gi|31 1213 LSRLQPVLQpLPSPGVGGKRD-VVFLIDG--SQSAGPEFQ------- 1249 kaakrtniaealcsldaleaksksvsfsgdakaaaegaaLasyefsrfds +++l +++++ +v f ++ +a + + tem12gi|31 1250 ----------YVRTLIERLVDYLDVGFD------TTRVAVIQFSD----- 1278 ekskpkeKsveesykviavktakeaekaikvaeivaegvnlARdLvNtPa +pk ++ + a + +e+++a++++ + ++ tem12gi|31 1279 ---DPKAEFLLN-----AHSSKDEVQNAVQRLRPKGGRQI---------- 1310 NilTPavlAeiAeklaskysdkvkveVldeeeleelGMGglLaVnkGSen N+ ++++++++ ++++ ++ +ee +V tem12gi|31 1311 NVGNALEYVSR--NIFKRPL---------GSRIEE-------GV------ 1336 pPrlivLeYkgnkkskekvklALVGKGiTFDSGGiSIKtGpaagMdlMKy P+++vL g k+++e tem12gi|31 1337 -PQFLVLISSG-KSDDEV-------------------------------- 1352 DMGGAAaVlGaikalAqlklpvnVvavvaltENmiSGtAmrPGDvitamn + +++lk +v++ t +a+n tem12gi|31 1353 -----------VVPAVELKQ----FGVAPFT---------------IARN 1372 GKTVEVlNTDAEGRLVLADaltYAekklnpevIIDvATLTGAcvvALGst AD ++ l pe+++ v+T tem12gi|31 1373 -----------------ADQEELVKISLSPEYVFSVST------------ 1393 ytGifsnddeLanelikAaeesGEkvWRmPlhedYkkqlkSSkiADlaNi f +L+++l++ P++ +q+++ +A + tem12gi|31 1394 ----FRELPSLEQKLLT------------PITTLTSEQIQK-LLA----S 1422 ggaarggGa..iTAA..lFLkeFvedgekvpWaHL<-* ++ ++++a ++ AA+ FL e++ + +aH+ tem12gi|31 1423 TR--YPPPAveSDAAdiVFLIDSSEGVRPDGFAHI 1455 DUF58: domain 1 of 1, from 1351 to 1511: score -70.6, E = 57 *->vkRGeyelgKVrvrs..gdplgLferersyevpdeiiVlPrvlslkk e ++ V++ + +++p+ ++++++ +e+ ++i+ P + ++ tem12gi|31 1351 ----EVVVPAVELKQfgVAPFTIARNAD-QEELVKISLSPEYVFSVS 1392 vlsqrlselregdklsksriggpgtE.ifkeiReYqpGDdvrrIdWkASA + r++ + e+ ++++i +++E+i k + AS+ tem12gi|31 1393 --TFRELPSLEQK--LLTPITTLTSEqIQKLL---------------AST 1423 RrgklmVkefeperekdvillLDasrsessgdevigkekfeyavslAasL R+ + V ++ ++d++ l+D+ se ++++ ++ +++++ +++ L tem12gi|31 1424 RYPPPAV----ESDAADIVFLIDS--SEGVRPDGFAH-IRDFVSRIVRRL 1466 afyalrnGdrvGllifsegepkwvppesGsrhlkkiLktLamlkldke<- + ++ rvG++ fs +++ ++ + +++ + +L++++ l+l+ + tem12gi|31 1467 NIGPSK--VRVGVVQFSNDVFPEFYLKTYRSQAP-VLDAIRRLRLRGG 1511 * tem12gi|31 - - PRAI: domain 1 of 1, from 1405 to 1562: score -87.6, E = 18 *->akicgltriedvvaavpagaDavylglifapssprqvfleqaqelrs + ++ +++e++++ + y + +++++ +vfl+++ ++ tem12gi|31 1405 LTPITTLTSEQIQKLLASTR---YPPPAVESDAADIVFLIDS---SE 1445 avp.plvqlVGVFvNqpieevlriaqelgLDvvQLHGdEtPpqeyakllp +v++ + + ++v+ri++ l ++ p tem12gi|31 1446 GVRpDG--FA-----HIRDFVSRIVRRL------------------NIGP 1470 tgvpvikafwvpasvd.adlarradhvgvdllLlDAqv..sgqGGtGklf ++v+v+ +++++ +v++ +++ + ++++lDA + ++G G + tem12gi|31 1471 SKVRVG-VVQFSNDVFpEFYLKTYRS---QAPVLDAIRrlRLRG--GSPL 1514 DWslikdllqsdegegeqslpviLAGGLtPeNVveAiqtLGslvgpaGVD + + ++++++ l v AG + + + + ++ + V tem12gi|31 1515 NTGKALEFVARN-------LFVKSAG----SRIEDGVP-----QHLVLV- 1547 VSSGVEtdpGvKDleKiraFvqa<-* G K+++ +++F q tem12gi|31 1548 -------L-GGKSQDDVSRFAQV 1562 vwa: domain 8 of 11, from 1436 to 1609: score 223.7, E = 2.7e-63 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg DivFL+D+S+ +++++F++++dFv+r+v rL++gp k vrVg tem12gi|31 1436 DIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGP-SK-----VRVG 1476 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq +vQ+S++v +E f+l++y++ + vl+a++++r +gg+++nTg+AL tem12gi|31 1477 VVQFSNDVFPE--FYLKTYRSQAPVLDAIRRLR---LRGGSPLNTGKALE 1521 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln +v+rnlf +++GsR +e g+p++lV++ +G+sqdd + + ++ tem12gi|31 1522 FVARNLFVKSAGSR----IEDGVPQHLVLVLGGKSQDD------VSRFAQ 1561 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +++ g++ ++G +n+d+ eL+ I ++p + vf v+ f++L++++ tem12gi|31 1562 VIRS-SGIVSLGVGDRNIDR---TELQTITNDP-RLVFTVREFRELPNIE 1606 elL<-* e + tem12gi|31 1607 ERI 1609 ATP-synt_F: domain 1 of 1, from 1572 to 1638: score -30.4, E = 12 *->iAViGDeDTvtGFrLAGvGelnknrhevYevvdketieEieeafrel GvG+ n r+e + +++++ +++ ++re+ tem12gi|31 1572 ----------------GVGDRNIDRTELQTITNDP---RLVFTVREF 1599 leRddvGIIvIteriaekirevierhtesipePtileipgkggafedgyd e +++i+e+i ++ +++++ ++ pg + + tem12gi|31 1600 RE-------------LPNIEERIMNSFGPSAA--TPAPPGVD-----TPP 1629 plRElIrra<-* p+R + ++a tem12gi|31 1630 PSRPEKKKA 1638 PDEase: domain 1 of 1, from 1648 to 1666: score -1.5, E = 61 *->qNLskkdfrtlrdlvieaI<-* +N+ ++ f++ +++v+e++ tem12gi|31 1648 INFRRDSFQEVLRFVSEIV 1666 UPF0023: domain 1 of 1, from 1516 to 1711: score -129.6, E = 76 *->kgpdiqvsLtnvaivRlkkaGkrFEiacyknkvadyregqekDlDEv g + n + k+aG r E + + +v + ++ D v tem12gi|31 1516 TGKALEFVARNLFV---KSAGSRIEDGVPQHLVLVLGGKSQ---DDV 1556 LqihvVFrnvSKGevAkkEeLskiFGttdvkeiikkqRRLAiilKRAsGG +V r S G v+ G+ d i + L i tem12gi|31 1557 SRFAQVIR--SSGIVS--------LGVGDRN--IDR-TELQTITN---DP 1590 evqLaekerelllekvkreiitiVSrktiNPetkkpyPPsvIeKALqELk + +e +l + r + + P +p PP v tem12gi|31 1591 RLVFTVREFRELPNIEERIMNSFG------PSAATPAPPGVD-------- 1626 fslkinkSAkeQaleaikkLvskkvLpIrraKmkikVaIsEPakeAekve + + ++ k+ a +++ +L I + tem12gi|31 1627 -TPPPSRPEKKKA-DIVFLL---------------DGSI----NFRRDSF 1655 kalkllassPkeeekqedgSLivvglI....epgsyreLyalvrketKGH + + s + edg i vgl++ +++p + L + tK tem12gi|31 1656 QEVLRFVSE-IVDTVYEDGDSIQVGLVqynsDPTDEFFLKDFS---TK-- 1699 Grvqvlslkkvve<-* r + + kvv tem12gi|31 1700 -RQIIDAINKVVY 1711 Ribosomal_L5: domain 1 of 1, from 1718 to 1740: score 1.9, E = 78 *->NvNTMqvPkPleKiViNmGvGEagddkkiLe<-* N+ +++ le +++N +v+Eag + L+ tem12gi|31 1718 NT----KVG-LEHLRVNHFVPEAGSR---LD 1740 vwa: domain 9 of 11, from 1639 to 1812: score 201.4, E = 1.4e-56 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg DivFLlDGS + +++ F++v++Fv+++v+ ++++ d+ ++Vg tem12gi|31 1639 DIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDG-DS-----IQVG 1679 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq lvQY+++++ E f l+d+++k +++a++k++ y+gg +nT +L tem12gi|31 1680 LVQYNSDPTDE--FFLKDFSTKRQIIDAINKVV---YKGGRHANTKVGLE 1724 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln +++ n+f +++GsR+ ++++p+++ v+T+G+s +d +dv+ tem12gi|31 1725 HLRVNHFVPEAGSRL----DQRVPQIAFVITGGKSVED------AQDVSL 1764 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +l + +gv+vfa+Gv+n+d +ee+ +IAs+ +++f+v++ ++L++l tem12gi|31 1765 ALTQ-RGVKVFAVGVRNID---SEEVGKIASNS-ATAFRVGNVQELSELS 1809 elL<-* e++ tem12gi|31 1810 EQV 1812 GFO_IDH_MocA: domain 1 of 1, from 1676 to 1867: score -85.2, E = 65 *->lrvGvvGtGrrlagrrHapallelpdr....iaelvavadrdpaaae + vG+v + + + + + + + + + + i ++v + r +a+++ tem12gi|31 1676 IQVGLVQYNSDPTDEFFLKDFSTKR-QiidaINKVVYKGGR-HANTK 1720 avaaefgvpavseydlaaaeelladpeiDaVyiatPnslHfeialaALea ++++v++++ ++ + l + + +++ t tem12gi|31 1721 VGLEHLRVNHFV-PEA---GSRLDQRVPQIAFVITGG------------- 1753 GKHVlcEKPlAltleeakelvelArekgv.vlqvgfnrRfdpafqtlkel ++e+a+ + ++gv+v+ vg tem12gi|31 1754 -----------KSVEDAQDVSLALTQRGVkVFAVGV------------RN 1780 iengvlGevrsvsv.dflfdraqresrwrerrdknrDPkakggGalgdlg i+++++G++ s+s + f+ ++ q s+ +e+ tem12gi|31 1781 IDSEEVGKIASNSAtAFRVGNVQELSELSEQ------------------- 1811 iHdlDllrwLfGeppsvvaalggkgqvaeageyedaavedalmlfanlef +l +L ++++++ + v +a++ + + ++ +++ tem12gi|31 1812 -----VLETLHDAMHETLC-----PGVTDAAKACNLD-------VILGFD 1844 gsgkvatlessfskslriryiie<-* gs ++++ + ++ + + + i tem12gi|31 1845 GSRDQNVFVAQKGFESKVDAILN 1867 Phage_F: domain 1 of 1, from 1467 to 1892: score -165.1, E = 65 *->snvqtsAeRv.phDLsHLaFeaGkiGRLktiswtPviAGDsFElDav n+ s Rv+++ s +F + + s Pv lDa+ tem12gi|31 1467 -NIGPSKVRVgVVQFSNDVFPEFYLKTYR--SQAPV-------LDAI 1503 GAlRL...sPLRRGLAiDskvDiFtFYiPHRHvYGeqWikFmkDGvnAsP lRL+++sPL G A++ R ++ + + DGv + tem12gi|31 1504 RRLRLrggSPLNTGKALEFVA---------RNLFVKSAGSRIEDGVPQHL 1544 LPsvtcssyiDhAaylGtivpstnkiPKfLhqgYLniYnnYFkaPWmpdr + +s D + i +s L g ni + + r tem12gi|31 1545 VLVLGGKSQDDVSRFAQVIRSSGIV---SLGVGDRNIDRTELQTITNDPR 1591 teAnPsnlnedDarygfRvchLKniWtAPLPPetklseemttetssiDim ++ e + + P PP + e + Di+ tem12gi|31 1592 LVFTVREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIV 1641 GLqAAYAkLHte..qERdYFmqRYrDvissFG.....GktsYDaDnRPLL L + ++ qE F+ D + + G++ + G Y +D tem12gi|31 1642 FLLDGSINFRRDsfQEVLRFVSEIVDTVYEDGdsiqvGLVQYNSDPTDEF 1691 vmrsefWAsGYDvDGtDqssL.GqFsGRvqqtfkHsvPRFfvPEHGvmmt ++ +f +D + +G + +H fvPE G + tem12gi|31 1692 FLK-DFSTKRQIIDAINKVVYkGGRHANTKVGLEHLRVNHFVPEAGSRLD 1740 LAl..vRFPPtaelEihYLagKe.aLtYtDiAgDPaLignLPPREislkd ++++ F t + ++ + aLt + + + n+ E+ tem12gi|31 1741 QRVpqIAFVITGGKSVEDAQDVSlALTQRGVKVFAVGVRNIDSEEVGK-- 1788 lFrsgdssaKfKiAEgqWYRtaPdyvafkYhaLeGFPFldelPgtssgde ++s+ f++ q ++v h+ + ++ + + tem12gi|31 1789 --IASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACN 1836 LqervLvrhndYDeiFqsvqLlqWnkqvkfn.vsvYRhl.......PttR L + ++F +++ + + n++s ++ +++++Pt+R tem12gi|31 1837 LDVILGFDGSRDQNVFVAQKGFESKVDAILNrISQMHRVscsggrsPTVR 1886 Dsimts<-* s++ tem12gi|31 1887 VSVVAN 1892 adh_short: domain 1 of 1, from 1745 to 1901: score -100.5, E = 59 *->KvaLvTGassGI..GlaiAkrLakeGakVvvadrneeklekGavake ++a v +++ ++ + ++L +G kV++++ ++ + e+ + + tem12gi|31 1745 QIAFVITGGKSVedAQDVSLALTQRGVKVFAVGVRNIDSEE---VGK 1788 lkelGgndkdralaiqlDvtdeesvaaveqaverlGrlDvLVNNAGgiil ++ + + + +++v ++ + eq++e l + + tem12gi|31 1789 IASNSA-----TAFRVGNVQELSE--LSEQVLETLHD--------A--M- 1820 lrpgpfaelsrtmeedwdrvidvNltgvflltravlplmamkkrggGrIv + l+ + d+ ++Nl + + + +++ v tem12gi|31 1821 -----HETLC---PGVTDAAKACNLDV-----ILGFD--GSRDQN----V 1851 NiSSvaGrkegglvgvpggsaYsASKaAvigltrsLAlElaphg...IrV +++ + + + ++ ++ ++ + +++++rV tem12gi|31 1852 FVAQKGF-------ESKVDAI-------LNRISQMHRVSCSGGRsptVRV 1887 navaP...GgvdTd<-* ++va +++G+v+ tem12gi|31 1888 SVVANtpsGPVEAF 1901 ThiF_family: domain 1 of 1, from 1769 to 1905: score -62.4, E = 92 *->knskVLvvGaGGLGsealknLalaGvGsGGkltivDgDtVelsNLnR + kV+ vG + se + +a +++ g + els L+ tem12gi|31 1769 RGVKVFAVGVRNIDSEEVGKIASNSAT---AFRV--GNVQELSELSE 1810 QflfresDvGkMpKaeaAaerLqelNPdvevsvtavnerltpenaeefie Q+l + D e+++ +++ + ++ +++ + ++ f+ tem12gi|31 1811 QVLETLHDAMH----ETLCPGVTDAAKACN--LDVILGFDGSRDQNVFVA 1854 gfq....ldvVvdalDnfearllingllllldaCvklg.....iplieag + + ++++d +++ + ++ ++ ++ g++++ + + a tem12gi|31 1855 QKGfeskVDAILNRIS------QMH------RVSCSGGrsptvRVSVVAN 1892 tlGlkGqvtvfip<-* t + ++ f tem12gi|31 1893 TPSGPVEAFDFDE 1905 UNG: domain 1 of 1, from 1937 to 1949: score 0.7, E = 59 *->lrfcppedVkVVI<-* +r+++p+ VkVVI tem12gi|31 1937 FRQSSPDSVKVVI 1949 Collagen: domain 1 of 5, from 2038 to 2097: score 48.4, E = 1.6e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G +Gp G Gp+G pG+ G +G pG+ G pGe+GpPG G G+ tem12gi|31 2038 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGF 2084 pGppGapGapGpp<-* +G pG+ G +G + tem12gi|31 2085 QGCPGQRGVKGSR 2097 Collagen: domain 2 of 5, from 2104 to 2163: score 51.6, E = 1.7e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G+ G G+ G++G++G pG +G++G+pG +G++Gp G +G+ G tem12gi|31 2104 GEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD 2150 pGppGapGapGpp<-* G +G pG pG+ tem12gi|31 2151 VGIRGDPGNPGQD 2163 Collagen: domain 3 of 5, from 2174 to 2233: score 37.6, E = 2.9e-07 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G Gp+G pG G pG pG++G +G+ G +GppG++G G pG+pG+ tem12gi|31 2174 GDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGF 2220 pGppGapGapGpp<-* G++G Ga Gp+ tem12gi|31 2221 EGEQGTRGAQGPA 2233 Collagen: domain 4 of 5, from 2234 to 2293: score 35.3, E = 1.4e-06 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+GppG G++G Gp+G G++GapG++G G+ G+ G pG+pGp tem12gi|31 2234 GPAGPPGLIGEQGISGPRGSGGARGAPGERGRTGPLGRKGEPGEPGP 2280 pGppGapGapGpp<-* +G G+pG+ G+ tem12gi|31 2281 KGGIGNPGPRGET 2293 Collagen: domain 5 of 5, from 2314 to 2373: score 52.6, E = 8.6e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG pGp+G pG+pG G +Gp+G +G +G++G+pG G++G+pG tem12gi|31 2314 GFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGY 2360 pGppGapGapGpp<-* pGp+G+ G G tem12gi|31 2361 PGPAGPRGNRGDS 2373 HrcA: domain 1 of 1, from 1738 to 2406: score -173.0, E = 19 *->mlteRqlqILraIV.edYiktgePVGSKtLsekhdialSsATIRNeM +l++R qI +I++ + +++++ V S L+++ +++ +RN tem12gi|31 1738 RLDQRVPQIAFVITgGKSVEDAQDV-SLALTQRG-VKVFAVGVRNI- 1781 adLEklGyLekpHtSsGRvCPsekGYRyYVDhllevksltetekrqiksq d E+ G ++++ s +++R V ++ e+++l+e q++++ tem12gi|31 1782 -DSEEVGKIASN---------SATAFR--VGNVQELSELSE----QVLET 1815 lldVkgrqydldkllqkaakiLS.eLtglt.......alV......lgPs l d ++ +l ++ aak + +++ +++++++++++V +++ + +++ tem12gi|31 1816 LHD--AMHETLCPGVTDAAKACNlDVILGFdgsrdqnVFVaqkgfeSKVD 1863 lekdilkhielipldph.....raLaVlvtdsGhVenriinlpanisesd +++ + +++ ++ ++++ r+ +V t sG Ve +++++ ++++ tem12gi|31 1864 AILNRISQMHRVSCSGGrsptvRVSVVANTPSGPVEA--FDFDE-YQPEM 1910 Laiisnilndr...LvGvklsEinqqledeleqilqkyglAadfvdvvlq L++++n +++ L +l+ +++++ + + ++f+d ++ tem12gi|31 1911 LEKFRNMRSQHpyvLTEDTLKVYLNKFRQSSPDSVKVV---IHFTDGADG 1957 illstldesseerlivmGgknlllnqpeFeDieklrqiLsllEdervlle l ++ ++ e+l ++G ++ + iL lE+ ++l++ tem12gi|31 1958 DLADL--HRASENLRQEG-VR--------------ALILVGLERVVNLER 1990 Llniyednkgd....................................... L + + + + +++ + + + + + ++ ++ ++ + + + ++++ tem12gi|31 1991 LMHLEFGRGFMydrplrlnlldldyelaeqldniaekaccgvpckcsgqr 2040 .................................................. +++++ ++ ++++ +++++ ++ ++++++++++++++ +++++ ++ +++ tem12gi|31 2041 gdrgpigsigpkgipgedgyrgypgdeggpgergppgvngtqgfqgcpgq 2090 .................................................. ++ +++++ ++++++ ++ + ++ ++++++++ +++++++++++++++++ tem12gi|31 2091 rgvkgsrgfpgekgevgeigldgldgedgdkglpgssgekgnpgrrgdkg 2140 .................................................. ++++++++++ + ++++++++++++++++++++++ ++ + +++++ +++ tem12gi|31 2141 prgekgergdvgirgdpgnpgqdsqergpkgetgdlgpmgvpgrdgvpgg 2190 .................................................. +++++++++ +++++++ +++++++++++ ++++++++ +++ ++ ++++ tem12gi|31 2191 pgetgknggfgrrgppgakgnkggpgqpgfegeqgtrgaqgpagpagppg 2240 .................................................. ++++ ++++++++ ++ +++++++++ ++++++++++++++ ++++++ tem12gi|31 2241 ligeqgisgprgsggargapgergrtgplgrkgepgepgpkggignpgpr 2290 .................................................. ++++++++++ +++++++++++++ ++ +++++++++++ ++++++++ + tem12gi|31 2291 getgddgrdgvgsegrrgkkgergfpgypgpkgnpgepglngttgpkgir 2340 .......................egvtirIGnEndlksmsgcSvItapYs ++++++++++ +++++++ +++ g++ + G s++ c++I + + tem12gi|31 2341 grrgnsgppgivgqkgrpgypgpAGPRGNRG-----DSIDQCALI-QSIK 2384 igekkplGtlgviGPtRmdYqrviplldlva<-* + GP +++ v+p+ ++a tem12gi|31 2385 DKCP------CCYGPLECP---VFPTELAFA 2406 Carn_acyltransf: domain 1 of 1, from 1396 to 2430: score -376.0, E = 48 *->sLPkLPVPaLedTlkrYLeslkPllsed................... +LP+L ++ L + l+se+ ++ +++ +++ +++ tem12gi|31 1396 ELPSL--------EQKLLTPITTLTSEQiqkllastrypppavesda 1434 ...............eelektkalvreFvepggeGekLQekLleyakktA + +++++ +++ +++++++v + v+ + + tem12gi|31 1435 adivflidssegvrpDGFAHIRDFVSRIVR-------------RLNIGP- 1470 ksnkkhtNwlsewWldyaYlagrdvplpvNSspgshvdvpkqdfpdtAyn +r v +++ S+ +++p+++ ++ + tem12gi|31 1471 -------------------SKVR-VGVVQFSN----DVFPEFYLKTY--R 1494 dQlrrAArlihsalsfkraldreeLPEVFHlNPkpdtalGkliflPSLSW Q+ ++ + l+ + l ++ + + tem12gi|31 1495 SQAPVLDAIRRLRLRGGSPLNTGKA---------LEFVAR---------- 1525 yGAvlkgtPLCMnQYkrLFntcRvPgkprdeqDsiqlyskskkegkcpeH + +++ + s+ e+ p+H tem12gi|31 1526 ---------------------------N-----LFVKSAGSRIEDGVPQH 1543 vvVicrGqfYkldvldsrnngklLteeeleaqLarIlsdssqeepkeapi +v + G+ +d+ + +a+++ +s +i tem12gi|31 1544 LVLVLGGK-----SQDD------------VSRFAQVIRSS--------GI 1568 GaLTsenRdeWakaRqkLlkdgpeNkesLekIesAlFvvCLDddspedfn +L ++R+ R +L+ + N L v++ + tem12gi|31 1569 VSLGVGDRNI---DRTELQTI-T-NDPRL--------VFTVREF------ 1599 drD.........................tvpvteeekkttsalsglhggg r ++ +++ ++ +++ ++ +++ +t p++ ekk tem12gi|31 1600 -RElpnieerimnsfgpsaatpappgvdTPPPSRPEKK------------ 1636 shqvGdgtNRWfDKsLQlIVtknGkaGlnaEHSpaDGipvlrLmeevytv K ++ +G+ + ++++ +vlr+ +e++ + tem12gi|31 1637 -------------K-ADIVFLLDGSINFRRDSFQ----EVLRFVSEIV-D 1667 dkqilksnvn.............eeseevgspsardgsslplPekLeFdi + + ++ ++++ + + ++++++e++ + s ++ +i tem12gi|31 1668 TVYEDG-DSIqvglvqynsdptdEFFLKDFSTKR--------------QI 1702 tpelqseIekAkekfdklisdldlvvlqFtgfGKgfiKkcklSPDaFiQl + +++++ k ++++ ++ +l+v +F + + D Q tem12gi|31 1703 IDAINKVVYKGGRHANTKVGLEHLRVNHFV-------PEAGSRLD---QR 1742 AlQLAyYrglyGkfvpTYEsASTRaFq...............hGRTETiR + Q+A+ + Gk v S++ q++ + + ++ +++ E + tem12gi|31 1743 VPQIAFVI-TGGKSVEDAQDVSLALTQrgvkvfavgvrnidsE---EVGK 1788 SvTteslaf.VqamldekpsaskeeklqLlkkAskkHvqyt...keAstG +++ + af+V ++ s+ e++l+ l +A+ H +++++ +A+++ tem12gi|31 1789 IASNSATAFrVGNVQE--LSELSEQVLETLHDAM--HETLCpgvTDAAKA 1834 kGvDRHLfgLkllakelgvpsPfS.......................... ++l lg++ S++++ +++ +++ + ++ ++ tem12gi|31 1835 ----------CNLDVILGFDG--Srdqnvfvaqkgfeskvdailnrisqm 1872 .................................................. ++ + +++++++ + + ++++++ + + ++ +++ ++ ++ +++++ tem12gi|31 1873 hrvscsggrsptvrvsvvantpsgpveafdfdeyqpemlekfrnmrsqhp 1922 .................................................. ++++ + ++ +++++++ + + +++ +++ + ++ +++ +++ tem12gi|31 1923 yvltedtlkvylnkfrqsspdsvkvvihftdgadgdladlhrasenlrqe 1972 .................................................. + + + ++ + ++ + + +++ +++ + + + + + ++ + tem12gi|31 1973 gvralilvglervvnlerlmhlefgrgfmydrplrlnlldldyelaeqld 2022 .................................................. + ++ + + + +++++++++ ++ ++++ +++++ ++ +++++++++ tem12gi|31 2023 niaekaccgvpckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpge 2072 .................................................. +++++ +++++ ++ +++++ +++++ ++++++ ++ + ++ ++++++++ tem12gi|31 2073 rgppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkg 2122 .................................................. +++++++++++++++++++++++++++ + +++++++++++++++++++ tem12gi|31 2123 lpgssgekgnpgrrgdkgprgekgergdvgirgdpgnpgqdsqergpkge 2172 .................................................. +++ ++ + +++++ ++++++++++++ +++++++ +++++++++++ ++ tem12gi|31 2173 tgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnkggpgqpgfeg 2222 .................................................. ++++++ +++ ++ ++++ ++++ ++++++++ ++ +++++++++ +++ tem12gi|31 2223 eqgtrgaqgpagpagppgligeqgisgprgsggargapgergrtgplgrk 2272 .................................................. +++++++++++ ++++++++++++++++ +++++++++++++ ++ ++++ tem12gi|31 2273 gepgepgpkggignpgprgetgddgrdgvgsegrrgkkgergfpgypgpk 2322 ..........................................rprrelle +++++++ ++++++++ +++++++++++ +++++++ +++ pr+++++ tem12gi|31 2323 gnpgepglngttgpkgirgrrgnsgppgivgqkgrpgypgpaGPRGNRGD 2372 ipAifldpkwllsnsfvlSfqtnstSedqvptetfigggFGPVvdDGyGi + ++ +++ ++ d +p+ ++GP + tem12gi|31 2373 ----------SIDQCALIQ-----SIKDKCPC------CYGP-------L 2394 cYniqGeedivvhissfsScpeTdadrfakyLekaLldmrd<-* ++ ++++ ++ + + + d f+ + ++ l + + tem12gi|31 2395 ECPVF-PTELAFALDTSE---GVNQDTFGRM-RDVVLSIVN 2430 Tryp_mucin: domain 1 of 1, from 2013 to 2500: score -24.8, E = 53 *->mttCRLLcALLvLaLCCClsvCvtAn..................... L L +a C v + +++++++++ ++ ++++ ++++ tem12gi|31 2013 -LDYELAEQLDNIAEKACCGVPCKCSgqrgdrgpigsigpkgipged 2058 .................................................. + ++ ++++++++++++++ +++++ ++ +++++ +++++ ++++++ ++ tem12gi|31 2059 gyrgypgdeggpgergppgvngtqgfqgcpgqrgvkgsrgfpgekgevge 2108 .................................................. + ++ ++++++++ +++++++++++++++++++++++++++ + +++++ tem12gi|31 2109 igldgldgedgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpg 2158 .................................................. +++++++++++++++++ ++ + +++++ ++++++++++++ +++++++ tem12gi|31 2159 npgqdsqergpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppga 2208 .................................................. +++++++++++ ++++++++ +++ ++ ++++ ++++ ++++++++ ++ tem12gi|31 2209 kgnkggpgqpgfegeqgtrgaqgpagpagppgligeqgisgprgsggarg 2258 .................................................. +++++++++ ++++++++++++++ ++++++++++++++++ +++++++ tem12gi|31 2259 apgergrtgplgrkgepgepgpkggignpgprgetgddgrdgvgsegrrg 2308 .................................................. ++++++ ++ +++++++++++ ++++++++ +++++++++++ ++++++ tem12gi|31 2309 kkgergfpgypgpkgnpgepglngttgpkgirgrrgnsgppgivgqkgrp 2358 .........gkeeaqgtvsggasnntttttttgkspttttttttkpPttt + +++ +++g++ g s ++ + + k + +++ P + tem12gi|31 2359 gypgpagprGNR--------GDSIDQCALIQSIKDKCPCCYGPLECPVFP 2400 ttttwaqsgpiltkkeqekettttttittkttttttttttttttttatEA t ++a +++ + t + +t + tem12gi|31 2401 TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY 2450 PsdtitttEAPtttttraPsrirkiDGslsssAWvCAPLllAvsALAYtt ttE r+ + ki + L A s +A t tem12gi|31 2451 N--NEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNT 2498 lG<-* tem12gi|31 2499 FK 2500 Patched: domain 1 of 1, from 1302 to 2522: score -606.7, E = 96 *->vlsskilytftpsDirksytergvrsedeplverkFfpgdgkpiarf ++ + + + ++++ y +r ++ + pl +r ++g+p+ f tem12gi|31 1302 LRPKGGRQINVGNALE--YVSRNIFKR--PLGSR---IEEGVPQ--F 1339 viitakarnsedytrpNiLdikyLnevvqvndfiltnvtipvsgalkkit + ++++++++ d+ + v+ +++f ++ +ti +++ tem12gi|31 1340 LVLISSGKSD---------DEVVVPAVE-LKQFGVAPFTIARNA------ 1373 lsfkdlCssfcdincpvnqhyngLdt......................la d ++ v+ + L ++ + ++ ++ ++ +++ ++ tem12gi|31 1374 -----------DQEELVK---ISLSPeyvfsvstfrelpsleqklltpIT 1409 ilrsnlhnsridlt.YPtmtffgtkiylgpnf...gGVkldpgeNdvekl l+s+++++ + t+YP+ ++ + ++ + ++++ GV++d+ tem12gi|31 1410 TLTSEQIQKLLASTrYPPPAVESDAADIVFLIdssEGVRPDG-------- 1451 lDsltklklvdtkseegniksvkaivLyyrlkrdpeeveedskeWElsle +++ v+ iv rl++ p +v + +++ +++ tem12gi|31 1452 --------------FAHIRDFVSRIV--RRLNIGPSKVRVGVVQFSNDVF 1485 .dyleneyksdshievtifsdqvledElvrngltlvPffvvgFaiLvtFs +++ ++y s + + d ++r l+ ++ g a++++ tem12gi|31 1486 pEFYLKTYRSQ----------APVLDAIRRLRLRGGSPLNTGKALEFV-- 1523 vltsvvlavrrsgslhidwvssKpiLAilgv....ltPlmAivsAfGlLf + + + ++ gs+ d v ++L+++g ++++++ ++ + + G+++ tem12gi|31 1524 -ARNLFVKS--AGSRIEDGVPQHLVLVLGGKsqddVSRFAQVIRSSGIVS 1570 wlGfrFnsI.....lcVm..PFLVLGAIGVDDmFLMvhaWqrttrslssr lG+ +I++++ ++++++P LV + r+ r+l+ tem12gi|31 1571 -LGVGDRNIdrtelQTITndPRLVF-TV-------------REFRELP-- 1603 arKvvkkRmgevlvEaGPSItITSlTnvLSFgIGaiTptPeIqlFCiyta ++R+ + + GPS ++T + G Tp+P tem12gi|31 1604 ---NIEERI---MNSFGPS----AATPAPP---GVDTPPP---------- 1630 vAiffdfiYQlTFFaAilaiagkyEmkgrhslflriTakavdaaetespk ++E k+ ++fl ++s + tem12gi|31 1631 ---------------------SRPEKKKADIVFLL----------DGSIN 1649 klkkqrlksrgsakaaPvekegeknSkfseveesles............. ++r s++ + + +e ++ e+ +s+ + + +++++++ tem12gi|31 1650 -------FRRDSFQ-EVLRFVSEIVDTVYEDGDSIQVglvqynsdptdef 1691 ......eksssdssksheaeqk..tavvkffln..iYcpfl......lnp ++ ++k + +++++ + ++ a++k+ l++ ++ +f+++ +++l+ tem12gi|31 1692 flkdfsTKRQIIDAINKVVYKGgrHANTKVGLEhlRVNHFVpeagsrLDQ 1741 kvrvcvllvyv.........vYlaiaiYGctnlkegLdPskLllkDSpLv v ++++++ +++ ++ ++v la++ +G++++ +g + +++ tem12gi|31 1742 RVPQIAFVITGgksvedaqdVSLALTQRGVKVFAVGVRN----IDSEEVG 1787 eilrlrekhvwpyGsqvtVvVNNPPDLtn.penrdrll..emvdeF.... +i+++ + +++G + L+ +e++ + l++ m +++ ++ tem12gi|31 1788 KIASNS-ATAFRVGNVQE--------LSElSEQVLETLhdAMHETLcpgv 1828 ......EntpyalGkWEnsTkfWLrdYekFlsssEeinleaseledeeee ++ + n+ +lG +++ rd ++F + +++e ++ tem12gi|31 1829 tdaakaCNLDVILGF--DGS----RDQNVFVAQ------KGFESKVDA-- 1864 idevdpvsvvvkdkqewifydllewFlkspgfshWqgdlvwdn.ktdket + + + ++ s+g+s+ + v++n+++ tem12gi|31 1865 --------------ILN-RISQMHRVSCSGGRSPTVRVSVVANtPS---- 1895 teikkFrFttgyHgkdlstwtdRtkllkewRgvAdeypddFNVTVFded. + +++F F + ++l+ +R+ +++p V +ed+ tem12gi|31 1896 GPVEAFDFDEY-----------QPEMLEKFRNMRSQHPY-----VLTEDt 1929 .................................................. + ++ +++++++ + + +++ +++ + ++ +++ ++++ + tem12gi|31 1930 lkvylnkfrqsspdsvkvvihftdgadgdladlhrasenlrqegvralil 1979 .................................................. + ++ + ++ + + +++ +++ + + + + + ++ ++ ++ tem12gi|31 1980 vglervvnlerlmhlefgrgfmydrplrlnlldldyelaeqldniaekac 2029 .................................................. + + + +++++++++ ++ ++++ +++++ ++ ++++++++++++++ + tem12gi|31 2030 cgvpckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpgergppgvn 2079 .................................................. ++++ ++ +++++ +++++ ++++++ ++ + ++ ++++++++ ++++++ tem12gi|31 2080 gtqgfqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkglpgssge 2129 .................................................. +++++++++++++++++++++ + ++++++++++++++++++++++ ++ tem12gi|31 2130 kgnpgrrgdkgprgekgergdvgirgdpgnpgqdsqergpkgetgdlgpm 2179 .................................................. + +++++ ++++++++++++ +++++++ +++++++++++ ++++++++ tem12gi|31 2180 gvpgrdgvpggpgetgknggfgrrgppgakgnkggpgqpgfegeqgtrga 2229 .................................................. +++ ++ ++++ ++++ ++++++++ ++ +++++++++ ++++++++++ tem12gi|31 2230 qgpagpagppgligeqgisgprgsggargapgergrtgplgrkgepgepg 2279 .................................................. ++++ ++++++++++++++++ +++++++++++++ ++ +++++++++++ tem12gi|31 2280 pkggignpgprgetgddgrdgvgsegrrgkkgergfpgypgpkgnpgepg 2329 .................................................. ++++++++ +++++++++++ +++++++ +++ +++++++++ ++ tem12gi|31 2330 lngttgpkgirgrrgnsgppgivgqkgrpgypgpagprgnrgdsidqcal 2379 ........................afFlDqilsilpttiQsiiwtlicMa ++ +++ + ++ + + +++ af lD+ + + +t++ + ++++ tem12gi|31 2380 iqsikdkcpccygplecpvfptelAFALDTSEGVNQDTFGRMRD--VVLS 2427 vVCflFIpnpitvfvitvsiaSIdiGVfGfLSLWGVdLDPisMitiIMSI +V +l I+++++ + v++++ + V t+ tem12gi|31 2428 IVNVLTIAESNCPTGARVAVVTYNNEV-----------------TT---- 2456 GFSVDfsAHiaYhFyrskgsesrsikkiplktpdeRvadALealGWPviQ ++F sk+ k+ l + ++++ AL + Q tem12gi|31 2457 ----------EIRFADSKR-------KSVLLDKIKNLQVALTS-----KQ 2484 AalSTiLcvlvLlFVpsYmvvvFfKTifLVVvlGlLHGLifLPilLslfv +l T + FV+ + +F + V G +L+ v tem12gi|31 2485 QSLET-----AMSFVARN---TFKR-----VRNG----------FLMRKV 2511 tssrifggdviirtsnakikkpseq<-* + +++++ p + tem12gi|31 2512 A--------------VFFSNTPTRA 2522 formyl_transf: domain 1 of 1, from 2509 to 2529: score 2.0, E = 21 *->mkiavliSGtgsnlqalldal<-* +k+av++S t++ ++++l ++ tem12gi|31 2509 RKVAVFFSNTPTRASPQLREA 2529 vwa: domain 10 of 11, from 2402 to 2581: score 87.5, E = 2.7e-22 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg +++F lD S+ + ++ F r++d v +v+ L+++++++ ++++rV+ tem12gi|31 2402 ELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNC--PTGARVA 2446 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq +v+Y+++v+tE + ++d+++k+ +l+++++++ ++ ++ + +A+ tem12gi|31 2447 VVTYNNEVTTE--IRFADSKRKSVLLDKIKNLQV--ALTSKQQSLETAMS 2492 yvvrnlft.easGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvl +v+rn f++ ++G ++kv+V+++ +++ +p ++r+++ tem12gi|31 2493 FVARNTFKrVRNGF--------LMRKVAVFFSNTPTRASP----QLREAV 2530 nelkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtl +l + ag+++ + ++ d ++l + +I + ++ h++ + ++L + tem12gi|31 2531 LKLSD-AGITPLFLT-RQED-RQLINALQINNTAVGHALVLPAGRDLTDF 2577 qelL<-* e + tem12gi|31 2578 LENV 2581 actin: domain 1 of 1, from 2570 to 2583: score -2.8, E = 91 *->AGRDLtdylmkiLt<-* AGRDLtd+l +Lt tem12gi|31 2570 AGRDLTDFLENVLT 2583 Dwarfin: domain 1 of 1, from 1791 to 2591: score -266.5, E = 71 *->vkrLlgwkqlgegeliqlnlynletggeeEkwakKAvesLVKKLKkk ++++ + g+ E + + e ++ +L + tem12gi|31 1791 SNSATAFRV----------------GNVQE--LSELSEQVLETLHDA 1819 kiywgeLeeLltAvtsrgtqpfeatkCVTIpt.RsLDGRLQvahnkkigr e+L vt +++ +V ++s D va tem12gi|31 1820 M-----HETLCPGVTDAAKAC---NLDVILGFdGSRDQNVFVAQ------ 1855 KGlPHViYcRlWRWPdLqsknELKhletCqfAfdsksdkqdevCiNPYHY KG+ + + l R ++ +++ C+ + + tem12gi|31 1856 KGFESKVDAILNRISQMH------RVS-CSGGRSP---TV---------- 1885 eRVelspgqilppvlvprlsmgePsrrvkpeysqdnekdlseeldaasid RV +p+++v + e ++pe + +++ tem12gi|31 1886 -RVS-VVA-NTPSGPVEAFDFDE----YQPEMLE-----------KFR-- 1915 pptihmhtdeikelydrykPqndsfsyvnatfasnlppqaphnPger... ++ ++ P +++ + + tem12gi|31 1916 --NMRSQ-----------HPYVLTED--------------------Tlkv 1932 .................................................. ++ +++++++ + + +++ +++ + ++ +++ ++++ + + tem12gi|31 1933 ylnkfrqsspdsvkvvihftdgadgdladlhrasenlrqegvralilvgl 1982 .................................................. ++ + ++ + + +++ +++ + + + + + ++ ++ ++ + tem12gi|31 1983 ervvnlerlmhlefgrgfmydrplrlnlldldyelaeqldniaekaccgv 2032 .................................................. + + +++++++++ ++ ++++ +++++ ++ ++++++++++++++ ++++ tem12gi|31 2033 pckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpgergppgvngtq 2082 .................................................. + ++ +++++ +++++ ++++++ ++ + ++ ++++++++ +++++++++ tem12gi|31 2083 gfqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkglpgssgekgn 2132 .................................................. ++++++++++++++++++ + ++++++++++++++++++++++ ++ + + tem12gi|31 2133 pgrrgdkgprgekgergdvgirgdpgnpgqdsqergpkgetgdlgpmgvp 2182 .................................................. ++++ ++++++++++++ +++++++ +++++++++++ ++++++++ +++ tem12gi|31 2183 grdgvpggpgetgknggfgrrgppgakgnkggpgqpgfegeqgtrgaqgp 2232 .................................................. ++ ++++ ++++ ++++++++ ++ +++++++++ +++++++++++++ tem12gi|31 2233 agpagppgligeqgisgprgsggargapgergrtgplgrkgepgepgpkg 2282 .................................................. + ++++++++++++++++ +++++++++++++ ++ +++++++++++ ++ tem12gi|31 2283 gignpgprgetgddgrdgvgsegrrgkkgergfpgypgpkgnpgepglng 2332 ....vSfpasvassttypLnanstpqsnqmnpqdneeplyqgsglnsPas ++++ ++ + ++s ++ ++ q + + g+++Pa+ tem12gi|31 2333 ttgpKGIRGRRGNS-------GPPGIVGQKGR--P--------GYPGPAG 2365 ilasnsefgpnqnyqqqqqqnhyssdcgPNlygfptpypdfhhpfnqQPp +n+ ++ q + +q ++ d P yg P tem12gi|31 2366 P-RGNRGDSIDQCALIQ-----SIKDKCPCCYG---------------PL 2394 qppQl.qnhtlgqesdpgspvqqvgntpppSvqrrycswtgeetesptng + p + ++ ++ g++++ g v + t+ e+ pt tem12gi|31 2395 ECPVFpTELAFALDTSEGVNQDTFGRMRDV-VLSIVNVLTIAESNCPT-- 2441 ktveddpndgnqnngflpessplelldksilpldsesveysepnvsnspl + ++ v+y + tem12gi|31 2442 --------------------G-----------ARVAVVTYNNE------- 2453 pefWCsIaYYElntRVGEtfkvssnsvVtVDGftDpsg..gseRfCLGqL t + ++++++ sv + D + ++ + s q tem12gi|31 2454 -----------VTTEI-RFADSKRKSV-LLDKIKNLQValTSK-----QQ 2485 sNvnnRnetiektRrhIGkGVqLyyegdGeVwaenlSDspIFVqSpnldy s + ++ ++ +R + + ++++G + + ++F n+ tem12gi|31 2486 SLE---TAMSFVARNT------FKRVRNGFLMR----KVAVFF--SNTPT 2520 eaGrhpgdtVhKipPgcsLKvFdnrqeFrqlLlqsvnagaaaaAqaAAvA +a+ ++ +V K+ + F +rqe rql + ++ tem12gi|31 2521 RASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINN----------- 2559 Gyakktsvg..girPAvSlsAaAfegvddLtrdmCtiRiSFVKGWGaeYp t vg+ + P A+++ +d tem12gi|31 2560 -----TAVGhaLVLP-------AGRDLTDFLE------------------ 2579 RQdItsTPCWIEvhLnrp<-* + + v L + tem12gi|31 2580 --NVLTC----HVCLDIC 2591 zf-C3HC4: domain 1 of 1, from 2584 to 2594: score 0.5, E = 77 *->CpICltTFdldepkpfk<-* C++C ld+ ++++ tem12gi|31 2584 CHVC-----LDI-CNID 2594 RecR: domain 1 of 1, from 2565 to 2609: score -8.0, E = 17 *->aevlrLAkaLleAkerlgyCsvCgaltdeev.CnICs..DerRdn<- a vl + L++ +e++ +C vC +++ +++C s + Rd+ tem12gi|31 2565 ALVLPAGRDLTDFLENVLTCHVCLDICNIDPsCGFGSwrPSFRDR 2609 * tem12gi|31 - - Worm_family_8: domain 1 of 1, from 1986 to 2627: score -306.3, E = 68 *->MTisYnldVstssiwtFfkLllRWKGSiWKavwkELivWlflYyiIF ++ +L+ tem12gi|31 1986 --------------VNLERLM-------------------------H 1993 saIYR.faLsksqwdgyqeiFeklvryfdsrldytIPLtFMLGFFVttVv + + R+f+++++ + + ++d l tem12gi|31 1994 LEFGRgFMYDRPL--------RLNLLDLDYELAE---------------- 2019 rRWwkiFdniGwIDniAlavaayirGkdee.................... ++dni +++++ v + G+ ++++++ ++ ++++ +++++ tem12gi|31 2020 -----QLDNIA--EKACCGVPCKCSGQ--Rgdrgpigsigpkgipgedgy 2060 .................................................. ++ ++++++++++++++ +++++ ++ +++++ +++++ ++++++ ++ + tem12gi|31 2061 rgypgdeggpgergppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeig 2110 .................................................. ++ ++++++++ +++++++++++++++++++++++++++ + +++++++ tem12gi|31 2111 ldgldgedgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpgnp 2160 .................................................. +++++++++++++++ ++ + +++++ ++++++++++++ +++++++ ++ tem12gi|31 2161 gqdsqergpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakg 2210 .................................................. +++++++++ ++++++++ +++ ++ ++++ ++++ ++++++++ ++ + tem12gi|31 2211 nkggpgqpgfegeqgtrgaqgpagpagppgligeqgisgprgsggargap 2260 .................................................. ++++++++ ++++++++++++++ ++++++++++++++++ +++++++++ tem12gi|31 2261 gergrtgplgrkgepgepgpkggignpgprgetgddgrdgvgsegrrgkk 2310 .................................................. ++++ ++ +++++++++++ ++++++++ +++++++++++ +++++++ tem12gi|31 2311 gergfpgypgpkgnpgepglngttgpkgirgrrgnsgppgivgqkgrpgy 2360 .................................................. +++ +++++++++ ++ ++ +++ + ++ + + +++ +++ tem12gi|31 2361 pgpagprgnrgdsidqcaliqsikdkcpccygplecpvfptelafaldts 2410 ........aRiiRRnIiRYlVLsQvLvFRDISmkVRkRFPTldtlVaAGl ++ ++++ R+ RD+ + + ++ t++ + tem12gi|31 2411 egvnqdtfGRM-----------------RDVVLSI----VNVLTIAESNC 2439 MteeEldklsesik.skysvgqkYWvPInWafsLlQyearkeGlIdsdyl t + + y+ ++ + +e ++++ tem12gi|31 2440 PT-------GARVAvVTYN------------NEVT-----TEIRFADSKR 2465 ynvlwdeIkeFRtgla....lLsnyDWVPIPLvYPQVVfLA......VRl +vl+d+Ik+ +++l++++++L + f A+++ ++VR tem12gi|31 2466 KSVLLDKIKNLQVALTskqqSLETA-----------MSFVArntfkrVRN 2504 YFl...vCLf.....gRQfldsddndnktenyIDlyf.PVPFimTilQFI Fl ++v++f +++++R ++ ++++ + D ++P ++ + Q tem12gi|31 2505 GFLmrkVAVFfsntpTRASPQLREAV-LKL--SDAGItP---LFLTRQ-- 2546 FyvGWmKVAEv..LLNPlGEDDDDFEcNyiIDRNLavGlaIVDtlWvkEn E+++L+N l +N+avG+a V + tem12gi|31 2547 ---------EDrqLINALQI------------NNTAVGHALVLPA----- 2570 qydrtPdlekDaFwdedaePlystses..F.....akipnnplvGSaanv ++ d+ + +++++ + s +F++ +++++ ++ aa tem12gi|31 2571 -GRDLTDFLENVLTCHVCLDICNIDPScgFgswrpSFRDRR-----AAGS 2614 kleeddveEvkmvph<-* +++ d + + ++ tem12gi|31 2615 DVDID--MAFILDSA 2627 4A_glucanotrans: domain 1 of 1, from 1220 to 2630: score -336.4, E = 49 *->lhlfSLpSeyswGIGdFGddAylfiDflkkaGaYqslwQiLPlnptg l++ LpS+ G+G +d +iD + aG ++++ L + tem12gi|31 1220 LQP--LPSP---GVGGK-RDVVFLIDGSQSAGPEFQYVRTLIERLVD 1260 pgssskdsPYsSfSafAlNplyIdleaLpefgllpkaqrwfkllveetrl + + +f+ + ++ + ++ +ef l + + + tem12gi|31 1261 YLDV-------GFDTTRVAVIQFSDDPKAEFLLNAHS-------SKDEVQ 1296 eelqelsel..drVDYstiyalKrpaLkkafkvFrssgsledveaFekFr + +q+l+++++++++ + ++++ +++ fk+++ s e v++F ++ tem12gi|31 1297 NAVQRLRPKggRQINVGNALEY---VSRNIFKRPLGSRIEEGVPQFLVLI 1343 edek.ksyWLeDYalFnvmAiKehfggipWnaWpdlldkplkkrdas... +k+ + ++ ++ + ++i na ++l k ++s++ tem12gi|31 1344 SSGKsDDEVVVPAVEL--KQFGVAPFTIARNAD----QEELVKISLSpey 1387 ........aleellkkladevdfhsfLQylffsQwaalkayAndklAAAE + ++ ++l +l++kl + + +l+ +Q ++l a ++ tem12gi|31 1388 vfsvstfrELPSLEQKLLTPIT------TLTSEQIQKLLASTRY------ 1425 YArkkgIgIkGDLPIyvaedSADVWanpelFklnvegkplvsaGaPPDyF P v d AD +F+ + s G+ PD F tem12gi|31 1426 ------------PPPAVESDAADI-----VFLID------SSEGVRPDGF 1452 setGQnWglPiYnWevLekdgYeWWieRLraalkyf.dilRIDHfrGFfr ++ +d ++ R+ + l++ ++ +R +G + tem12gi|31 1453 ---------------AHIRD----FVSRIVRRLNIGpSKVR----VGVVQ 1479 lWeiPasGmGektAdnGkwvkaPg.......................... + + ++++ k ++++ + + ++ + +++++ ++++ + tem12gi|31 1480 F---SN---DVFPEFYLKTYRSQApvldairrlrlrggsplntgkalefv 1523 .................................................. ++ ++ +++ +++ +++ +++++++ ++ + ++++ + + tem12gi|31 1524 arnlfvksagsriedgvpqhlvlvlggksqddvsrfaqvirssgivslgv 1573 .................................................. ++++ ++++ ++ +++++ + ++ ++ ++ +++ ++ +++ ++ ++ tem12gi|31 1574 gdrnidrtelqtitndprlvftvrefrelpnieerimnsfgpsaatpapp 1623 .................................................. + ++++++++++++ + +++ + ++++ ++ + ++ ++ +++ tem12gi|31 1624 gvdtpppsrpekkkadivflldgsinfrrdsfqevlrfvseivdtvyedg 1673 ..........................ddlfsilleesgrk.......... ++ + + + +++++++ ++ ++++ +++++ +++ k++++ +++ + tem12gi|31 1674 dsiqvglvqynsdptdefflkdfstkRQIIDAINKVVY-Kggrhantkvg 1722 .................................................. ++ + ++ ++ +++ +++ ++ +++++ ++ ++ + ++++ + tem12gi|31 1723 lehlrvnhfvpeagsrldqrvpqiafvitggksvedaqdvslaltqrgvk 1772 .................................................. + ++ ++++ ++ +++ + + ++ ++ ++ +++ ++ ++ ++ tem12gi|31 1773 vfavgvrnidseevgkiasnsatafrvgnvqelselseqvletlhdamhe 1822 .................................................. + ++ ++ + + + + +++++++ +++ +++ + ++ ++ tem12gi|31 1823 tlcpgvtdaakacnldvilgfdgsrdqnvfvaqkgfeskvdailnrisqm 1872 .................................................. ++ + +++++++ + + ++++++ + + ++ +++ ++ ++ +++++ tem12gi|31 1873 hrvscsggrsptvrvsvvantpsgpveafdfdeyqpemlekfrnmrsqhp 1922 .................................................. ++++ + ++ +++++++ + + +++ +++ + ++ +++ +++ tem12gi|31 1923 yvltedtlkvylnkfrqsspdsvkvvihftdgadgdladlhrasenlrqe 1972 .................................................. + + + ++ + ++ + + +++ +++ + + + + + ++ + tem12gi|31 1973 gvralilvglervvnlerlmhlefgrgfmydrplrlnlldldyelaeqld 2022 .................................................. + ++ + + + +++++++++ ++ ++++ +++++ ++ +++++++++ tem12gi|31 2023 niaekaccgvpckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpge 2072 .................................................. +++++ +++++ ++ +++++ +++++ ++++++ ++ + ++ ++++++++ tem12gi|31 2073 rgppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkg 2122 .................................................. +++++++++++++++++++++++++++ + +++++++++++++++++++ tem12gi|31 2123 lpgssgekgnpgrrgdkgprgekgergdvgirgdpgnpgqdsqergpkge 2172 .................................................. +++ ++ + +++++ ++++++++++++ +++++++ +++++++++++ ++ tem12gi|31 2173 tgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnkggpgqpgfeg 2222 .................................................. ++++++ +++ ++ ++++ ++++ ++++++++ ++ +++++++++ +++ tem12gi|31 2223 eqgtrgaqgpagpagppgligeqgisgprgsggargapgergrtgplgrk 2272 .................................................. +++++++++++ ++++++++++++++++ +++++++++++++ ++ ++++ tem12gi|31 2273 gepgepgpkggignpgprgetgddgrdgvgsegrrgkkgergfpgypgpk 2322 .................................................. +++++++ ++++++++ +++++++++++ +++++++ +++ ++++++++ tem12gi|31 2323 gnpgepglngttgpkgirgrrgnsgppgivgqkgrpgypgpagprgnrgd 2372 .................................................. + ++ ++ +++ + ++ + + +++ +++++ ++++ ++ + tem12gi|31 2373 sidqcaliqsikdkcpccygplecpvfptelafaldtsegvnqdtfgrmr 2422 .................................................. + + + + +++ +++ + + +++ +++ + ++++++ ++ tem12gi|31 2423 dvvlsivnvltiaesncptgarvavvtynnevtteirfadskrksvlldk 2472 ................aemliIgEDLGtipeeVrPKHmLKLiVTelreef ++ + ++++++ + m +++ r T +r + tem12gi|31 2473 iknlqvaltskqqsleTAMSFVA----------R--------NTFKRVRN 2504 gipGmkIlqFAfdsdsenpflPhnyyyeensVvytgTHDndTlrgWweel g++ k+ F f s + P + + ++ +g + + ++ tem12gi|31 2505 GFLMRKVAVF-F-SNTPTRASPQLRE-AVLKLSDAG------ITPLFLTR 2545 dlrLresLGLltdvVLkqkYpeekkkfaeyLgrlpyteteeeevhwallr +e+++++ ++ ++ ++v +al tem12gi|31 2546 --------------------QEDRQLINALQI-----NN--TAVGHALVL 2568 lahssvsrfaInplqDsnSrlLaLgpelvskllqeeRiNiPgTpsgypNW +a + +f+ n+l ++++ + +P+ +g W tem12gi|31 2569 PAGRDLTDFLENVLTC------HVCLD--------ICNIDPSCGFG--SW 2602 r.....wRlkpsldsPmLLelifalkafiklltaiy<-* r++ +++R ++s + + + afi + ++++ tem12gi|31 2603 RpsfrdRRAAGS--------DVDIDMAFILDSAETT 2630 Leptin: domain 1 of 1, from 2645 to 2655: score -0.8, E = 86 *->mLrqLDlsPgC<-* ++rqLD+sP+ tem12gi|31 2645 LVRQLDMSPDP 2655 US22: domain 1 of 1, from 2400 to 2661: score -120.1, E = 58 *->agLclrqddrlggLrdfve.rnaGtrLsLvWPegwfLvlrsgedipe +++ +++d +g++ +++r ++ +Ls+v+ L+++++ + tem12gi|31 2400 PTELAFALDTSEGVNQDTFgRMRDVVLSIVN----VLTIAESNCPT- 2441 iseedaekladdaYlCCpepLetvlGvivipgtdldvekhtersktplvv + ++ + + + + + +i+ + + +++s v tem12gi|31 2442 --GARVAVVTYN-------NEV----TTEIR-----FADSKRKS-----V 2468 LlGrrGrvYPaYd....rerDdDaLyyvAesldeFarkGLrrcepvYrse Ll++ + + a +++++ +++ a+ +vA++ + +r+G++ ++ tem12gi|31 2469 LLDKIKNLQVALTskqqSLET--AMSFVARNTFKRVRNGFL-------MR 2509 dtplstteprfvvedlrvedltslsdvlafrrehglnvklrlptpgreet ++++ f+ ++ + ++ ++vl++ + ++ + ++ tem12gi|31 2510 KVAV------FFSNTPTRASPQLREAVLKLSDAG-ITPLFLTR------- 2545 wpllllgeflrlrsvspfraldeierrrllavivqRLccrfvvlGvvGry + + l+ +l+ + ++ ++al + + r+l ++ L+c+ + + + tem12gi|31 2546 QEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDP 2595 r.lfgdfvrlisilvDdfGavYavdvdDpdgrvrrlAdsfdeFlrmGllk fg+++ + ++D++ a vd+d + + A++ + F + ++k tem12gi|31 2596 ScGFGSWRPS---FRDRRAAGSDVDID--MAFILDSAETTTLFQFNEMKK 2640 lyenhRfrrrlrgawrlerpptcphrrfdq<-* ++ + l ++ ++ + p+ +++ tem12gi|31 2641 YIAY------LVRQLDMSP---DPKASQHF 2661 TrehaloseP_syn: domain 1 of 1, from 1983 to 2757: score -317.6, E = 50 *->srlivVSNrlPvtlkRksselegkweykismssgGLvsaldglkkaa +r+++ l+ + +g+ + +++ ++ ld ++++ tem12gi|31 1983 ERVVNLER-----LMHLE---FGR-GFMYDRPLRLNLLDLDYELAEQ 2020 .ekvtefvvWvGwlGvevdedeg.g....l.................... +++ e +++Gv+ + + ++g+++++++ ++++ +++++ ++ +++ tem12gi|31 2021 lDNIAEK----ACCGVPCKCSGQrGdrgpIgsigpkgipgedgyrgypgd 2066 .................................................. +++++++++++ +++++ ++ +++++ +++++ ++++++ ++ + ++ ++ tem12gi|31 2067 eggpgergppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeigldgldg 2116 .................................................. ++++++ +++++++++++++++++++++++++++ + +++++++++++++ tem12gi|31 2117 edgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpgnpgqdsqe 2166 .................................................. +++++++++ ++ + +++++ ++++++++++++ +++++++ ++++++++ tem12gi|31 2167 rgpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnkggpg 2216 .................................................. +++ ++++++++ +++ ++ ++++ ++++ ++++++++ ++ +++++++ tem12gi|31 2217 qpgfegeqgtrgaqgpagpagppgligeqgisgprgsggargapgergrt 2266 .................................................. ++ ++++++++++++++ ++++++++++++++++ +++++++++++++ + tem12gi|31 2267 gplgrkgepgepgpkggignpgprgetgddgrdgvgsegrrgkkgergfp 2316 .................................................. + +++++++++++ ++++++++ +++++++++++ +++++++ +++ ++ tem12gi|31 2317 gypgpkgnpgepglngttgpkgirgrrgnsgppgivgqkgrpgypgpagp 2366 .................................................. +++++++ ++ ++ +++ + ++ + + +++ +++++ +++ tem12gi|31 2367 rgnrgdsidqcaliqsikdkcpccygplecpvfptelafaldtsegvnqd 2416 .................................................. + ++ ++ + + + +++ +++ + + +++ +++ + +++++ tem12gi|31 2417 tfgrmrdvvlsivnvltiaesncptgarvavvtynnevtteirfadskrk 2466 ......aeslkdrvslqrlkekfscvpVflddedadeyYnGafsnsiLWP + +++ +l+ +++ + ++ ++ + f+ + ++++ +nG tem12gi|31 2467 svlldkIKNLQVALT--SKQQSLETAMSFVARNTFKRVRNG--------- 2505 lfHYhppyimdpldekefdrsaWdaYvrvNklFAdkivenykpdgDlIWi + + f + +r+ + +++ + ++ g + tem12gi|31 2506 ---FLMR------KVAVFFSNTP---TRASPQLREAVLKLSD-AGIT--- 2539 HDYHLmLlPqmLRerlpdk.l.nakIGFFLHiPFPSSEiFRtLPtvReeI L+L q+ R++++ + +n +G+ L LP +++ tem12gi|31 2540 ---PLFLTRQEDRQLINALqInNTAVGHAL-----------VLP-AGRDL 2574 LrGLLgaDliGFhTydYarHFLsccsRllgttkirtletesnrgtigvey d+ ++ + +c l+ + ++++ + tem12gi|31 2575 --------------TDFLEN-VLTCHVCLD-----ICNIDPS-----CGF 2599 gGrtvsVgafPIGIDperfesilkspsvqekikelkerfgngkAdmKlIl g ++ p +++++ +v+ ++++ ++ + + tem12gi|31 2600 GSWR-----------PSFRDRRAAGSDVDIDMAFILDSAETTT------- 2631 GvDRLDyiKGipqKLrAfErFLeeyPewrGKVVLvQiavpsRgdveeYqn L ++ e+ + ++ + d + q tem12gi|31 2632 ---------------------LFQFNEMKKYIAYLVRQLDMSPDPKASQH 2660 lrsqveelVgrINgeFGtldytP...vvflhrsldfdeliAlyaaaDvcl ++ ++V++ +e ++P+ +v f + + +e+ l tem12gi|31 2661 FARV--AVVQHAPSESVDNASMPpvkVEFSLTDYGSKEK----------L 2698 VtslRDGMNLVayEYvacqqdaslstrkGvLILSEFaGaAqsLndgnAil V l GM +q ++ + L ++ tem12gi|31 2699 VDFLSRGM---------TQLQ-----GTRA------------LGSA---- 2718 VNPWDieevAeaiysALtmseeeRqkrhkklfkyiskhdvqrWaesFlsd ie + e +++ + + + l ++ e++l++ tem12gi|31 2719 -----IEYTIENVFESAPNPRDLKIV-VLMLTGEVP--------EQQLEE 2754 lkr<-* ++r tem12gi|31 2755 AQR 2757 MCM: domain 1 of 1, from 1456 to 2764: score -376.7, E = 10 *->kpisiReLrashig.kLVrvsGiVtraSeVrPklkkavy..tCpkCg + + R +r +ig++ Vrv G+V + +V+P+ +y+++ p + tem12gi|31 1456 RDFVSRIVRRLNIGpSKVRV-GVVQFSNDVFPEFYLKTYrsQAPVLD 1501 htveveiqdlfinsftkptfcpsreCptcqskgdlkeNGdCplgpfildh ++ + + +s ++ + e +++ +++ tem12gi|31 1502 AIRRLRLRG---GS--PLNTGKALEFVARN---------------LFVKS 1531 dkSkfvDfQeikiQElpeevPaGqiPRsvdvillddLVdkvkPGDrVevt S+ D P ++ ++l + tem12gi|31 1532 AGSRIED----------------GVPQHLVLVLGG--------------- 1550 GIyrvvpdvqLgpkkrlntsgsrGvtglkslgvgglvfktyieAnhiekl + +d s+ f+ +i+ +i l tem12gi|31 1551 ----KSQD---------DVSR----------------FAQVIRSSGIVSL 1571 sseiqdnkrlggekaDlekseeeiteellsqltdedeeeikklakdkkdi + + + +++ +++ + it + + + +++ + +i tem12gi|31 1572 GVG---DRNID------RTELQTITND------PRLVFTVREFRELP-NI 1605 yekLsrSlAPsIYGhedVKKAILLlLfGGveKnlpdGtkdrlRGDINiLL e++ +S fG + ++ tem12gi|31 1606 EERIMNS-------------------FGPSAATPAP-------------- 1622 vGDPG............................................. PG ++++++++++++ + +++ + ++++ ++ + ++ ++ tem12gi|31 1623 ---PGvdtpppsrpekkkadivflldgsinfrrdsfqevlrfvseivdtv 1669 .............................KTAKSQlLKyVeklaPRAvYT +++++ + + + +++++++ ++ ++K + ++ + vY tem12gi|31 1670 yedgdsiqvglvqynsdptdefflkdfstK-------RQIIDAINKVVYK 1712 sGk.GSSaVGLa...................................... G+++ + VGL + + ++ ++ +++ +++ ++ +++++ ++ ++ tem12gi|31 1713 GGRhANTKVGLEhlrvnhfvpeagsrldqrvpqiafvitggksvedaqdv 1762 .................................................. + ++++ + + ++ ++++ ++ +++ + + ++ ++ ++ +++ tem12gi|31 1763 slaltqrgvkvfavgvrnidseevgkiasnsatafrvgnvqelselseqv 1812 .................................................. ++ ++ +++ ++ ++ + + + + +++++++ +++ +++ tem12gi|31 1813 letlhdamhetlcpgvtdaakacnldvilgfdgsrdqnvfvaqkgfeskv 1862 .................................................. + ++ ++ ++ + +++++++ + + ++++++ + + ++ +++ + tem12gi|31 1863 dailnrisqmhrvscsggrsptvrvsvvantpsgpveafdfdeyqpemle 1912 .................................................. + ++ +++++ ++++ + ++ +++++++ + + +++ +++ + tem12gi|31 1913 kfrnmrsqhpyvltedtlkvylnkfrqsspdsvkvvihftdgadgdladl 1962 .................................................. ++ +++ ++++ + + ++ + ++ + + +++ +++ + + + tem12gi|31 1963 hrasenlrqegvralilvglervvnlerlmhlefgrgfmydrplrlnlld 2012 .................................................. + + ++ ++ ++ + + + +++++++++ ++ ++++ +++++ ++ tem12gi|31 2013 ldyelaeqldniaekaccgvpckcsgqrgdrgpigsigpkgipgedgyrg 2062 .................................................. ++++++++++++++ +++++ ++ +++++ +++++ ++++++ ++ + + tem12gi|31 2063 ypgdeggpgergppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeigld 2112 .................................................. + ++++++++ +++++++++++++++++++++++++++ + +++++++++ tem12gi|31 2113 gldgedgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpgnpgq 2162 .................................................. +++++++++++++ ++ + +++++ ++++++++++++ +++++++ ++++ tem12gi|31 2163 dsqergpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnk 2212 .................................................. +++++++ ++++++++ +++ ++ ++++ ++++ ++++++++ ++ +++ tem12gi|31 2213 ggpgqpgfegeqgtrgaqgpagpagppgligeqgisgprgsggargapge 2262 .................................................. ++++++ ++++++++++++++ ++++++++++++++++ +++++++++++ tem12gi|31 2263 rgrtgplgrkgepgepgpkggignpgprgetgddgrdgvgsegrrgkkge 2312 .................................................. ++ ++ +++++++++++ ++++++++ +++++++++++ +++++++ ++ tem12gi|31 2313 rgfpgypgpkgnpgepglngttgpkgirgrrgnsgppgivgqkgrpgypg 2362 .................................................. + +++++++++ ++ ++ +++ + ++ + + +++ +++++ tem12gi|31 2363 pagprgnrgdsidqcaliqsikdkcpccygplecpvfptelafaldtseg 2412 .................................................. ++++ ++ ++ + + + +++ +++ + + +++ +++ + + tem12gi|31 2413 vnqdtfgrmrdvvlsivnvltiaesncptgarvavvtynnevtteirfad 2462 .................................................. +++++ ++ ++ + ++++++ ++ + +++ ++ +++ ++ tem12gi|31 2463 skrksvlldkiknlqvaltskqqsletamsfvarntfkrvrngflmrkva 2512 .....TAaVvRDpeTgEDwvLEaGALVLADgGvcCIDEFDKMndsDRtAI ++T + p+ +E vL+ L+D G+ + + +DR I tem12gi|31 2513 vffsnTPT-RASPQLRE-AVLK-----LSDAGITP---LFLTRQEDRQLI 2552 HEAMEQQTISIAKAGItttLNARcSvLAAANPiyGRYDpkktpieNIdLp I+ t++ vL A GR + + eN+ tem12gi|31 2553 ------NALQINN---TAV--GHALVLPA-----GR--DLTDFLENVLTC 2584 apLLSRFDLiFvvlDepDee............kDeeLAkHvvdvHrhskP + v lD+++ +++ + ++ +++ +D++ A vd+ + tem12gi|31 2585 H----------VCLDICNIDpscgfgswrpsfRDRRAAGSDVDIDMAF-- 2622 eedgeegglvlasdadNkaeeeeieeepyekfDsllhgkkekarseklei +++e+ + tem12gi|31 2623 -------------------ILDSAETTT---------------------- 2631 dggeidielLrkYIaYAReqik............................ ++ ++ ++kYIaY q +++++ +++ + ++ ++++ ++ tem12gi|31 2632 ---LFQFNEMKKYIAYLVRQLDmspdpkasqhfarvavvqhapsesvdna 2678 ..................................PkLseeAaekiveaYv + ++ + + + ++ +++++ + +++ ++ +++ L + + +i++ + tem12gi|31 2679 smppvkvefsltdygskeklvdflsrgmtqlqgtRALGSAIEYTIENVFE 2728 elRkddkrEsdtgsasrstipITaRqLEsiIRLsEAhAKlrLsdeVeeeD + + +R L ++ l+L eV e+ tem12gi|31 2729 SAPN-------------------PRDLKIVV--------LMLTGEVPEQQ 2751 VeeAirLireslk<-* eeA r+i +++ tem12gi|31 2752 LEEAQRVILQAKC 2764 CorA: domain 1 of 1, from 1893 to 2768: score -134.3, E = 4 *->iedktvvWidlinePteeemaklskafgihp.ltlediedieqraKv + +v +d+ e+++e ++k + ++hp ++ed ++++ + + tem12gi|31 1893 TPSGPVEAFDFD-EYQPEMLEKFRNMRSQHPyVLTEDTLKVYLNKFR 1938 eedddylfiilhffsvnldeeegvvlar...................... +d +++++hf + ++ la ++ +++ ++++ + + + tem12gi|31 1939 QSSPDSVKVVIHF--TDGADGD---LADlhrasenlrqegvralilvgle 1983 .................................................. + + ++ + + +++ +++ + + + + + ++ ++ ++ + + tem12gi|31 1984 rvvnlerlmhlefgrgfmydrplrlnlldldyelaeqldniaekaccgvp 2033 .................................................. + +++++++++ ++ ++++ +++++ ++ ++++++++++++++ +++++ tem12gi|31 2034 ckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpgergppgvngtqg 2083 .................................................. ++ +++++ +++++ ++++++ ++ + ++ ++++++++ ++++++++++ tem12gi|31 2084 fqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkglpgssgekgnp 2133 .................................................. +++++++++++++++++ + ++++++++++++++++++++++ ++ + ++ tem12gi|31 2134 grrgdkgprgekgergdvgirgdpgnpgqdsqergpkgetgdlgpmgvpg 2183 .................................................. +++ ++++++++++++ +++++++ +++++++++++ ++++++++ +++ tem12gi|31 2184 rdgvpggpgetgknggfgrrgppgakgnkggpgqpgfegeqgtrgaqgpa 2233 .................................................. ++ ++++ ++++ ++++++++ ++ +++++++++ ++++++++++++++ tem12gi|31 2234 gpagppgligeqgisgprgsggargapgergrtgplgrkgepgepgpkgg 2283 .................................................. ++++++++++++++++ +++++++++++++ ++ +++++++++++ +++ tem12gi|31 2284 ignpgprgetgddgrdgvgsegrrgkkgergfpgypgpkgnpgepglngt 2333 .................................................. +++++ +++++++++++ +++++++ +++ +++++++++ ++ ++ tem12gi|31 2334 tgpkgirgrrgnsgppgivgqkgrpgypgpagprgnrgdsidqcaliqsi 2383 .................................................. +++ + ++ + + +++ +++++ ++++ ++ ++ + + + tem12gi|31 2384 kdkcpccygplecpvfptelafaldtsegvnqdtfgrmrdvvlsivnvlt 2433 .................................................. +++ +++ + + +++ +++ + ++++++ ++ ++ + +++ tem12gi|31 2434 iaesncptgarvavvtynnevtteirfadskrksvlldkiknlqvaltsk 2483 .....................eeleteqvsiv.........lgknfllTi +++ ++ + +++ ++ ++++l ++ +++++++++ +++ ++ +l + tem12gi|31 2484 qqsletamsfvarntfkrvrnGFLMRKVAVFFsntptraspQLREAVLKL 2533 herheidilasvRkRirtkkpgvlrqkgsdylfyalldaiidsyfpvlek i l+ R + r++ ++ +++ ++ + + ++ tem12gi|31 2534 SDA-GITPLFLTRQEDRQL---INA--------LQINNTAV--GHALVLP 2569 iedeieeLEdqIlagr.........................stpsstild + ++ + +++l ++ + + +++ + ++ +++ ++++ +s+ +d tem12gi|31 2570 AGRDLTDFLENVLTCHvcldicnidpscgfgswrpsfrdrrAAGSDVDID 2619 eIlslrrelldlvtlrralipkrdvlnfllretkepwiip.......... ++ l++ t + ++++ + + l+r+ + p+++ +++ + tem12gi|31 2620 MAFILDSAET---TTLFQFNEMKKYIAYLVRQLDMS---Pdpkasqhfar 2663 ...........................qkEvreylrDiydHtdqllevie ++ ++++ ++ + ++ + + + ++ + +e+l D+ ++ + l+ ++ tem12gi|31 2664 vavvqhapsesvdnasmppvkvefsltDYGSKEKLVDFLSRGMTQLQGTR 2713 tyrellsRsHsNsLmdiylslvvsnrqNeImKilTvvttiFiPpTlIaGi + ++ +i++ + s +++Ki ++++l++ tem12gi|31 2714 ALGSAIE-------YTIENVFE-SAPNPRDLKI--------VVLMLTG-- 2745 YGMNFkWfMPELnwkyGYpfvlilMvllallmlywFrrKgWL<-* + +PE++ ++ + + Kg++ tem12gi|31 2746 -----E--VPEQQLEEAQRVI------------LQAKCKGYF 2768 Peptidase_S24: domain 1 of 1, from 2664 to 2776: score -48.7, E = 33 *->idvfvdsslreesslPlfsdrvqAGfpipAaeyieerdeldlndycv ++v+++ + +++++ + +++v+ f +++ e+ d +++ tem12gi|31 2664 VAVVQHAPSESVDNASMPPVKVE--FSLTDYGSKEK--LVDFLSRGM 2706 krPeatffLrVsGdSMkdPaGklSIldGDlLvVDksetarnGdiVVArie + t r+ G+ + + I++ v +++ ++r+ +iVV+++ tem12gi|31 2707 TQLQGT---RALGSAIEY--T---IEN----VFESAPNPRDLKIVVLMLT 2744 gdkEfTVKRLqlrpgrvaLiPlNpayppItineee<-* g E+ L rv L++ + y + ++ + tem12gi|31 2745 G--EVPEQQLEEAQ-RVILQAKCKGYFFVVLGIGR 2776 vwa: domain 11 of 11, from 2619 to 2809: score 44.9, E = 1.8e-09 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeeda.vrV D +F+lD+ + F+++K + +v +Ld +p d+k++++ +rV tem12gi|31 2619 DMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSP-DPKASQHfARV 2664 glvQYSdn..........vrtEikfklndyqnkdevlqalqkiryedyyg ++vQ + ++ ++ + ++v++E f+l dy +k+++ + l++ + +++ tem12gi|31 2665 AVVQHAPSesvdnasmppVKVE--FSLTDYGSKEKLVDFLSRGM---TQL 2709 gggtnTgaALqyvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddp g +g+A+ y+++n+f a +R + + v+++lT+ + + tem12gi|31 2710 QGTRALGSAIEYTIENVFESAPNPR-------DLKIVVLMLTGEVPEQQL 2752 spTidirdvlnelkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvf ++ ++v+ ++k +g+ +++G+G +n +e+ +As+p + ++ tem12gi|31 2753 EE---AQRVILQAKC-KGYFFVVLGIGRKVN--IKEVYTFASEPNdVFFK 2796 kvsdfeaLdtlqelL<-* v+ +++L +e+L tem12gi|31 2797 LVDKSTELN--EEPL 2809 FARP: domain 1 of 1, from 2804 to 2814: score 11.1, E = 19 *->srdkrfmRFGR<-* ++++ mRFGR tem12gi|31 2804 LNEEPLMRFGR 2814 Keratin_B2: domain 1 of 1, from 2862 to 2972: score -94.0, E = 44 *->qtScCGfptCStlgtrPsCGsscCQPsCCeSCCQpsCcqpSCCqPtc +tS +pt t +P + + +P tem12gi|31 2862 VTS---SPTSNPVTT--------TKP----------VTTT---KP-- 2882 sqtscCqPtcfqssCCrPsCcqTSCCqPtCcqsssCqtgCgigGsiGyGQ t+ +P++ + +P ++ qP+ + + tem12gi|31 2883 -VTTTTKPVTTTT---KPVTII---NQPS-VKPAAAKPAP---------- 2914 eGsSGAvScrirWCRPdCrvegtClPpCCvvsCtaPTCCqpvsaQasCCR + +P t +Pp+ v ta +pv a R tem12gi|31 2915 --------AKPVAAKPVATKTATVRPPVAVKPATAA---KPVAAKPAAVR 2953 PsCqPyCgqsCCRPaCccsvtCtrTccePc<-* P + +P+ + +P tem12gi|31 2954 PP----A--AAAKPVATKP-----EVPRPQ 2972 fn3: domain 1 of 1, from 2986 to 3068: score 2.4, E = 1.3 *->P.saP.tnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge P + + ++v ++t++s+ l+W++p+ Y +t+ ++ +++ tem12gi|31 2986 PvVKMlREVQVFEITENSAKLHWERPE-PPGPYFYDLTV-TSAHDQS 3030 .wneltvpgtttsytltgLkPgteYevrVq..AvnggGGpeS<-* ++++ t ++ gL +g +Y+v V+ ++++ +++ tem12gi|31 3031 lVLKQNLTVTD--RVIGGLLAGQTYHVAVVcyLRSQV--RAT 3068 Luteo_Vpg: domain 1 of 1, from 3058 to 3121: score -66.4, E = 60 *->lelPEeQAraRHSysQRTtSraTPrEVSpSGRlYQnArHSqmEYSRP ++ Q+ra++ s +T tem12gi|31 3058 VCYLRSQVRATYHGSFSTK---------------------------- 3076 TMsIRSqvSswSSSpRPLPpppVPSLmswT..ptAktqpssptlisSqSq +Sq P+Pp+p+ S s+T ++ ++t p l+ tem12gi|31 3077 ----KSQ---------PPPPQPARSASSSTinLMVSTEPLA--LTETDIC 3111 rlvrkvsqrr<-* +l+++ + r tem12gi|31 3112 KLPKDEGTCR 3121 Kunitz_BPTI: domain 1 of 1, from 3111 to 3161: score 94.1, E = 2e-29 *->CslPpdtGptkcpCkggnfarywRwYYdpatgktTkCepFtYgGCgG C lP+d+G C+ + + +wYYdp+t++ C +F+YgGCgG tem12gi|31 3111 CKLPKDEGT----CR----DFILKWYYDPNTKS---CARFWYGGCGG 3146 NaNNFetkeeCertC<-* N+N F +++eCe+ C tem12gi|31 3147 NENKFGSQKECEKVC 3161 // Start with PfamFrag (from /data/patterns/pfam) hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/patterns/pfam/PfamFrag Sequence file: tem12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- vwa von Willebrand factor type A domain 1887.3 0 12 Collagen Collagen triple helix repeat (20 copi 178.2 1.4e-49 6 Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhi 94.1 2e-29 1 FARP FMRFamide related peptide family 9.2 0.31 1 fn3 Fibronectin type III domain 6.4 2.2 1 DUF24 Protein of unknown function DUF24 4.7 4 1 TBP Transcription factor TFIID (or TATA-b 4.6 7.4 1 DUF125 Integral membrane protein DUF125 3.4 5 1 Barwin Barwin family 3.3 6.1 1 Amidase_2 N-acetylmuramoyl-L-alanine amidase 3.2 7.7 1 TarH Tar ligand binding domain homologues 2.9 15 1 HTH_4 Helix-turn-helix protein, copG family 2.6 49 1 formyl_transf Formyl transferase 2.0 21 1 DUF104 Protein of unknown function DUF104 2.0 31 1 RecR RecR protein 2.0 82 1 Ribosomal_L5 Ribosomal protein L5 1.9 78 1 TIG IPT/TIG domain 1.4 79 1 DUF44 Domain of unknown function DUF44 1.4 48 1 ELH Egg-laying hormone precursor 0.8 10 1 UNG Uracil-DNA glycosylase 0.7 59 1 PSI_PsaJ Photosystem I reaction centre subunit 0.6 99 1 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 0.5 77 1 GST Glutathione S-transferases. 0.4 43 1 DAHP_synth_1 DAHP synthetase family 0.4 27 1 Basic Myogenic Basic domain 0.4 68 1 Histidinol_dh Histidinol dehydrogenase 0.0 31 1 DNA_mis_repair DNA mismatch repair protein -0.3 71 1 catalase Catalase -0.3 53 1 Phage_F Capsid protein (F protein) -0.4 42 1 Peptidase_C13 Peptidase C13 family -0.6 53 1 Na_K_ATPase_C Na+/K+ ATPase C-terminus -0.7 84 1 Leptin Leptin -0.8 86 1 CN_hydrolase Carbon-nitrogen hydrolase -0.8 57 1 A2M_N Alpha-2-macroglobulin family N-termin -0.9 32 1 Polyhedrin Polyhedrin -0.9 77 1 Hex_IIIa Hexon-associated protein (IIIa) -1.1 54 1 Tissue_fac Tissue factor -1.2 96 1 Rhabd_nucleocap Rhabdovirus nucleocapsid protein -1.4 89 1 PDEase 3'5'-cyclic nucleotide phosphodiester -1.5 61 1 Seedstore_11s 11S plant seed storage protein -1.5 97 1 Asparaginase_2 Asparaginase -1.7 82 1 COLFI Fibrillar collagen C-terminal domain -1.8 83 1 actin Actin -2.8 91 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- A2M_N 1/1 1 18 [. 1 20 [. -0.9 32 DUF125 1/1 9 20 .. 172 184 .] 3.4 5 Seedstore_11s 1/1 1 29 [. 1 29 [. -1.5 97 vwa 1/12 39 213 .. 1 200 [] 198.3 3.5e-57 DUF44 1/1 210 229 .. 62 81 .] 1.4 48 vwa 2/12 242 415 .. 1 200 [] 190.8 5.6e-55 Rhabd_nucleocap 1/1 423 438 .. 1 16 [. -1.4 89 HTH_4 1/1 480 496 .. 29 45 .] 2.6 49 Asparaginase_2 1/1 550 568 .. 1 21 [. -1.7 82 ELH 1/1 573 592 .. 243 262 .] 0.8 10 Polyhedrin 1/1 586 603 .. 202 219 .. -0.9 77 vwa 3/12 445 620 .. 1 200 [] 211.7 4.1e-61 TarH 1/1 755 772 .. 1 18 [. 2.9 15 catalase 1/1 784 796 .. 304 316 .. -0.3 53 vwa 4/12 639 812 .. 1 200 [] 226.1 2.4e-65 vwa 5/12 837 1009 .. 1 200 [] 174.2 4.4e-50 GST 1/1 1029 1058 .. 182 207 .] 0.4 43 vwa 6/12 1029 1201 .. 1 200 [] 196.2 1.4e-56 TIG 1/1 1219 1251 .. 67 103 .] 1.4 79 Hex_IIIa 1/1 1302 1310 .. 525 534 .] -1.1 54 COLFI 1/1 1324 1331 .. 1 9 [. -1.8 83 vwa 7/12 1233 1404 .. 1 200 [] 205.6 2.5e-59 PSI_PsaJ 1/1 1490 1503 .. 1 16 [. 0.6 99 vwa 8/12 1436 1609 .. 1 200 [] 221.9 4.2e-64 Phage_F 1/1 1594 1612 .. 412 430 .] -0.4 42 PDEase 1/1 1648 1666 .. 95 113 .. -1.5 61 DUF104 1/1 1663 1673 .. 1 12 [. 2.0 31 Histidinol_dh 1/1 1644 1674 .. 1 32 [. 0.0 31 Ribosomal_L5 1/1 1718 1740 .. 1 31 [. 1.9 78 TBP 1/1 1749 1763 .. 63 77 .. 4.6 7.4 DNA_mis_repair 1/1 1778 1791 .. 1 14 [. -0.3 71 vwa 9/12 1639 1812 .. 1 200 [] 199.5 1.5e-57 DAHP_synth_1 1/1 1807 1821 .. 341 355 .] 0.4 27 UNG 1/1 1937 1949 .. 10 22 .. 0.7 59 Amidase_2 1/1 1930 1952 .. 1 28 [. 3.2 7.7 Collagen 1/6 2038 2097 .. 1 60 [] 46.4 2.9e-11 Collagen 2/6 2104 2163 .. 1 60 [] 49.6 3.8e-12 Collagen 3/6 2166 2193 .. 26 53 .. 9.0 0.54 Collagen 4/6 2195 2246 .. 1 52 [. 29.6 1.2e-06 Collagen 5/6 2249 2300 .. 1 52 [. 32.8 1.6e-07 Collagen 6/6 2314 2373 .. 1 60 [] 50.6 2e-12 Basic 1/1 2464 2471 .. 108 115 .] 0.4 68 formyl_transf 1/1 2509 2529 .. 1 21 [. 2.0 21 vwa 10/12 2402 2581 .. 1 200 [] 85.6 4.6e-24 actin 1/1 2570 2583 .. 184 197 .. -2.8 91 zf-C3HC4 1/1 2584 2594 .. 1 17 [. 0.5 77 RecR 1/1 2565 2595 .. 1 31 [. 2.0 82 Leptin 1/1 2645 2655 .. 136 146 .] -0.8 86 vwa 11/12 2619 2668 .. 1 50 [. 7.8 0.35 CN_hydrolase 1/1 2661 2676 .. 1 19 [. -0.8 57 DUF24 1/1 2682 2693 .. 59 70 .. 4.7 4 Na_K_ATPase_C 1/1 2750 2770 .. 71 91 .. -0.7 84 vwa 12/12 2683 2809 .. 55 200 .] 35.7 2.1e-09 FARP 1/1 2804 2814 .. 1 11 [] 9.2 0.31 Tissue_fac 1/1 2962 2979 .. 1 20 [. -1.2 96 fn3 1/1 2998 3058 .. 11 74 .. 6.4 2.2 Barwin 1/1 3062 3070 .. 1 10 [. 3.3 6.1 Peptidase_C13 1/1 3060 3110 .. 307 364 .] -0.6 53 Kunitz_BPTI 1/1 3111 3161 .. 1 62 [] 94.1 2e-29 Alignments of top-scoring domains: A2M_N: domain 1 of 1, from 1 to 18: score -0.9, E = 32 *->MgkdrllqlcLwllLllLlf<-* M+k+r l L+ + +l+l+ tem12gi|31 1 MRKHRH--LPLVAVFCLFLS 18 DUF125: domain 1 of 1, from 9 to 20: score 3.4, E = 5 *->vvAvlslllekgs<-* +vAv++l l+ g+ tem12gi|31 9 LVAVFCLFLS-GF 20 Seedstore_11s: domain 1 of 1, from 1 to 29: score -1.5, E = 97 *->MAkklasl.lvfsLcLlll.fngclAqqeQQ<-* M k ++l+lv+ +cL+l++f + Aqq QQ tem12gi|31 1 M-RKHRHLpLVAVFCLFLSgFPTTHAQQ-QQ 29 vwa: domain 1 of 12, from 39 to 213: score 198.3, E = 3.5e-57 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg Di+FL+D+S+ ig+ F++v++F+++vv +L vg+ + +++ tem12gi|31 39 DIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGE-ND-----FHFA 79 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq lvQ+++n++tE f+ln+y++k evl+ ++++ y+gg + Tg++L tem12gi|31 80 LVQFNGNPHTE--FLLNTYRTKQEVLSHISNMS----YIGGTNQTGKGLE 123 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln y + + t+a+GsR a g+p+v+VvlTDG s d+ + +++ tem12gi|31 124 YIMQSHLTKAAGSR----AGDGVPQVIVVLTDGHSKDG------LALPSA 163 elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl elk a+v+vfaiGv +ad + L+eIAs+p ++h f++++f++L+++ tem12gi|31 164 ELKS-ADVNVFAIGVEDAD---EGALKEIASEPLnMHMFNLENFTSLHDI 209 qelL<-* + L tem12gi|31 210 VGNL 213 DUF44: domain 1 of 1, from 210 to 229: score 1.4, E = 48 *->pGqiVfcVmaritSdepGkt<-* +G +V cV + ++ G+t tem12gi|31 210 VGNLVSCVHSSVSPERAGDT 229 vwa: domain 2 of 12, from 242 to 415: score 190.8, E = 5.6e-55 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg Di+FL+DGS++ gs nF+ ++dF++++ e+L +g ++ +rVg tem12gi|31 242 DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGT-QQ-----IRVG 282 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq +vQ+Sd++rt f+l++y++k+ vl a++++ + gg+ +n+g AL+ tem12gi|31 283 VVQFSDEPRTM--FSLDTYSTKAQVLGAVKALG---FAGGELANIGLALD 327 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln +vv+n+ft+a GsR eeg+p+vlV++++G+s+d ir + tem12gi|31 328 FVVENHFTRAGGSR----VEEGVPQVLVLISAGPSSDE------IRYGVV 367 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +lk+ a+v f++G+ a + +eL+ IA+++ + vf v f++ +lq tem12gi|31 368 ALKQ-ASVFSFGLGAQAASR---AELQHIATDD-NLVFTVPEFRSFGDLQ 412 elL<-* e+L tem12gi|31 413 EKL 415 Rhabd_nucleocap: domain 1 of 1, from 423 to 438: score -1.4, E = 89 *->nnqvvsvklPanedPv<-* + +++k+P+++++v tem12gi|31 423 AQRHIVLKPPTIVTQV 438 HTH_4: domain 1 of 1, from 480 to 496: score 2.6, E = 49 *->elirealekyleekekq<-* +li++a+ +y+++ + + tem12gi|31 480 DLIQVAVAQYADTVRPE 496 Asparaginase_2: domain 1 of 1, from 550 to 568: score -1.7, E = 82 *->gtllIaihgleGagdidsseP<-* ++ll+ i g G++++ +s+P tem12gi|31 550 PKLLVLITG--GKSLDEISQP 568 ELH: domain 1 of 1, from 573 to 592: score 0.8, E = 10 *->KRssevsLlasdkdeeeRel<-* KRss ++ + ++k+ ++ el tem12gi|31 573 KRSSIMAFAIGNKGADQAEL 592 Polyhedrin: domain 1 of 1, from 586 to 603: score -0.9, E = 77 *->GtdSaEeEEILlEVSLvF<-* G d aE EEI SLvF tem12gi|31 586 GADQAELEEIAFDSSLVF 603 vwa: domain 3 of 12, from 445 to 620: score 211.7, E = 4.1e-61 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg DivFL+DGS+ +g +nF++++dF+ +v++rL++g+ d ++V+ tem12gi|31 445 DIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQ-DL-----IQVA 485 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq ++QY+d vr+E f++n++++k ev+ a++k++ ++ g+++ Tg+AL+ tem12gi|31 486 VAQYADTVRPE--FYFNTHPTKREVITAVRKMK---PLDGSALYTGSALD 530 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln +v++nlft ++G R a eg+pk+lV++T+G+s d i ++++ tem12gi|31 531 FVRNNLFTSSAGYR----AAEGIPKLLVLITGGKSLDE------ISQPAQ 570 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfea..Ldt elk+ +++ faiG ++ad ++eL+eIA++ vf+ f+a +L+ tem12gi|31 571 ELKR-SSIMAFAIGNKGAD---QAELEEIAFDS-SLVFIPAEFRAapLQG 615 lqelL<-* + + L tem12gi|31 616 MLPGL 620 TarH: domain 1 of 1, from 755 to 772: score 2.9, E = 15 *->etssyQqaalslsrvlll<-* +++sy qaa++l+r+++l tem12gi|31 755 SEDSYLQAANALTRAGIL 772 catalase: domain 1 of 1, from 784 to 796: score -0.3, E = 53 *->AEvEQaAFsPahl<-* AE EQ+AF+P+ + tem12gi|31 784 AELEQIAFNPSLV 796 vwa: domain 4 of 12, from 639 to 812: score 226.1, E = 2.4e-65 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg Di+FLlDGS ++g nF+ v+dFv+++v++Ld+g d+ +rVg tem12gi|31 639 DIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGN-DN-----IRVG 679 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq lvQ+Sd + tE f+ln+yq+k+++l l++++ +gg+g+nTg+AL tem12gi|31 680 LVQFSDTPVTE--FSLNTYQTKSDILGHLRQLQ---LQGGSGLNTGSALS 724 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln yv+ n+ftea GsRi+ e++p++l++lT+G+s d+ + +++n tem12gi|31 725 YVYANHFTEAGGSRIR----EHVPQLLLLLTAGQSEDS------YLQAAN 764 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +l + ag+ +f +G+ +a + +eL++IA++p v+ ++df++L+ l tem12gi|31 765 ALTR-AGILTFCVGASQANK---AELEQIAFNP-SLVYLMDDFSSLPALP 809 elL<-* ++L tem12gi|31 810 QQL 812 vwa: domain 5 of 12, from 837 to 1009: score 174.2, E = 4.4e-50 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg Di FL DGS ++ q F+ v+dF++++++ L+v p +r++ tem12gi|31 837 DILFLFDGSANLVGQ-FPVVRDFLYKIIDELNVKP-EG-----TRIA 876 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq ++QYSd+v++E ++++q+k e+l +++++ ++g+++n+g AL+ tem12gi|31 877 VAQYSDDVKVE--SRFDEHQSKPEILNLVKRMK---IKTGKALNLGYALD 921 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln y+ r++f +++GsR +e g+ ++lV+l++Grs+d+ ++ ++ tem12gi|31 922 YAQRYIFVKSAGSR----IEDGVLQFLVLLVAGRSSDR------VDGPAS 961 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +lk+ gv++f++ ++nad ++eL++I+ p ++++ ++ + + +l tem12gi|31 962 NLKQ-SGVVPFIFQAKNAD---PAELEQIVLSP-AFILAAESLPKIGDLH 1006 elL<-* +++ tem12gi|31 1007 PQI 1009 GST: domain 1 of 1, from 1029 to 1058: score 0.4, E = 43 *->dwlerldldp....eyPnLkawrervaarp<-* d ++ ld++++ ++++P Lk +++rv ++ tem12gi|31 1029 DVVFLLDGSEgvrsGFPLLKEFVQRVVESL 1058 vwa: domain 6 of 12, from 1029 to 1201: score 196.2, E = 1.4e-56 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg D+vFLlDGS+ ++s +F++ K+Fv rvve+Ldvg+ d vrV+ tem12gi|31 1029 DVVFLLDGSEGVRS-GFPLLKEFVQRVVESLDVGQ-DR-----VRVA 1068 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggt.nTgaAL +vQYSd+ r+E f+ln y nk +v a++++ ++gg+t+nTgaAL tem12gi|31 1069 VVQYSDRTRPE--FYLNSYMNKQDVVNAVRQLT----LLGGPTpNTGAAL 1112 qyvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvl +v rn+ ++GsR + eg+p++l+vlT++rs dd +r ++ tem12gi|31 1113 EFVLRNILVSSAGSR----ITEGVPQLLIVLTADRSGDD------VRNPS 1152 nelkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtl ++k+ g ++++iG+Gnad e++ I++ p d++ +f++L t+ tem12gi|31 1153 VVVKR-GGAVPIGIGIGNAD---ITEMQTISFIP-DFAVAIPTFRQLGTV 1197 qelL<-* q+ + tem12gi|31 1198 QQVI 1201 TIG: domain 1 of 1, from 1219 to 1251: score 1.4, E = 79 *->ktPpva.pgpsppv.vtvsvdgggsgdgrssspvtFtYv<-* ++ p+++pg++++++v + +dg++ s++ F+Yv tem12gi|31 1219 VLQPLPsPGVGGKRdVVFLIDGSQ------SAGPEFQYV 1251 Hex_IIIa: domain 1 of 1, from 1302 to 1310: score -1.1, E = 54 *->LRPqRlGRqy<-* LRP ++GRq tem12gi|31 1302 LRP-KGGRQI 1310 COLFI: domain 1 of 1, from 1324 to 1331: score -1.8, E = 83 *->lksPeGksr<-* +k+P+G sr tem12gi|31 1324 FKRPLG-SR 1331 vwa: domain 7 of 12, from 1233 to 1404: score 205.6, E = 2.5e-59 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg D+vFL+DGS+S g+ +F+ v+ +er+v+ Ldvg d+ +rV+ tem12gi|31 1233 DVVFLIDGSQSAGP-EFQYVRTLIERLVDYLDVGF-DT-----TRVA 1272 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq ++Q+Sd+++ E f+ln++++kdev a+q++r ++gg + n+g AL tem12gi|31 1273 VIQFSDDPKAE--FLLNAHSSKDEVQNAVQRLR---PKGGRQINVGNALE 1317 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln yv rn+f++ GsR +eeg+p++lV+++ G+s+d + ++ tem12gi|31 1318 YVSRNIFKRPLGSR----IEEGVPQFLVLISSGKSDDE------VVVPAV 1357 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq elk+ gv +f+i+ +nad +eeL++I+ p ++vf+vs+f++L+ l+ tem12gi|31 1358 ELKQ-FGVAPFTIA-RNAD---QEELVKISLSP-EYVFSVSTFRELPSLE 1401 elL<-* ++L tem12gi|31 1402 QKL 1404 PSI_PsaJ: domain 1 of 1, from 1490 to 1503: score 0.6, E = 99 *->mklkkyLstAPvlavl<-* lk+y s APvl ++ tem12gi|31 1490 --LKTYRSQAPVLDAI 1503 vwa: domain 8 of 12, from 1436 to 1609: score 221.9, E = 4.2e-64 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg DivFL+D+S+ +++++F++++dFv+r+v rL++gp k vrVg tem12gi|31 1436 DIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGP-SK-----VRVG 1476 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq +vQ+S++v +E f+l++y++ + vl+a++++r +gg+++nTg+AL tem12gi|31 1477 VVQFSNDVFPE--FYLKTYRSQAPVLDAIRRLR---LRGGSPLNTGKALE 1521 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln +v+rnlf +++GsR +e g+p++lV++ +G+sqdd + + ++ tem12gi|31 1522 FVARNLFVKSAGSR----IEDGVPQHLVLVLGGKSQDD------VSRFAQ 1561 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +++ g++ ++G +n+d+ eL+ I ++p + vf v+ f++L++++ tem12gi|31 1562 VIRS-SGIVSLGVGDRNIDR---TELQTITNDP-RLVFTVREFRELPNIE 1606 elL<-* e + tem12gi|31 1607 ERI 1609 Phage_F: domain 1 of 1, from 1594 to 1612: score -0.4, E = 42 *->fnvsvYRhlPttRDsimts<-* f v +R+lP + + im s tem12gi|31 1594 FTVREFRELPNIEERIMNS 1612 PDEase: domain 1 of 1, from 1648 to 1666: score -1.5, E = 61 *->qNLskkdfrtlrdlvieaI<-* +N+ ++ f++ +++v+e++ tem12gi|31 1648 INFRRDSFQEVLRFVSEIV 1666 DUF104: domain 1 of 1, from 1663 to 1673: score 2.0, E = 31 *->MPKIIEAIYENG<-* ++I++ +YE+G tem12gi|31 1663 -SEIVDTVYEDG 1673 Histidinol_dh: domain 1 of 1, from 1644 to 1674: score 0.0, E = 31 *->lrkllrRpvqdvseeilktVkpIieaVkenGD<-* l ++ ++ ++ e +l+ V +I++ V e GD tem12gi|31 1644 LDGSINFRRDSFQE-VLRFVSEIVDTVYEDGD 1674 Ribosomal_L5: domain 1 of 1, from 1718 to 1740: score 1.9, E = 78 *->NvNTMqvPkPleKiViNmGvGEagddkkiLe<-* N+ +++ le +++N +v+Eag + L+ tem12gi|31 1718 NT----KVG-LEHLRVNHFVPEAGSR---LD 1740 TBP: domain 1 of 1, from 1749 to 1763: score 4.6, E = 7.4 *->ViTGAKSeedakrAv<-* ViTG+KS+eda +++ tem12gi|31 1749 VITGGKSVEDAQDVS 1763 DNA_mis_repair: domain 1 of 1, from 1778 to 1791: score -0.3, E = 71 *->IkqLdpelvnkIAa<-* ++ +d+e v kIA+ tem12gi|31 1778 VRNIDSEEVGKIAS 1791 vwa: domain 9 of 12, from 1639 to 1812: score 199.5, E = 1.5e-57 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg DivFLlDGS + +++ F++v++Fv+++v+ ++++ d+ ++Vg tem12gi|31 1639 DIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDG-DS-----IQVG 1679 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq lvQY+++++ E f l+d+++k +++a++k++ y+gg +nT +L tem12gi|31 1680 LVQYNSDPTDE--FFLKDFSTKRQIIDAINKVV---YKGGRHANTKVGLE 1724 yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln +++ n+f +++GsR+ ++++p+++ v+T+G+s +d +dv+ tem12gi|31 1725 HLRVNHFVPEAGSRL----DQRVPQIAFVITGGKSVED------AQDVSL 1764 elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq +l + +gv+vfa+Gv+n+d +ee+ +IAs+ +++f+v++ ++L++l tem12gi|31 1765 ALTQ-RGVKVFAVGVRNID---SEEVGKIASNS-ATAFRVGNVQELSELS 1809 elL<-* e++ tem12gi|31 1810 EQV 1812 DAHP_synth_1: domain 1 of 1, from 1807 to 1821: score 0.4, E = 27 *->EdTealLeqLAqAVr<-* E +e++Le L++A tem12gi|31 1807 ELSEQVLETLHDAMH 1821 UNG: domain 1 of 1, from 1937 to 1949: score 0.7, E = 59 *->lrfcppedVkVVI<-* +r+++p+ VkVVI tem12gi|31 1937 FRQSSPDSVKVVI 1949 Amidase_2: domain 1 of 1, from 1930 to 1952: score 3.2, E = 7.7 *->vnvnkyqrnyPgrkmkpegPivIviHnT<-* ++v+++++ r+++p+ +++viH T tem12gi|31 1930 LKVYLNKF----RQSSPDS-VKVVIHFT 1952 Collagen: domain 1 of 6, from 2038 to 2097: score 46.4, E = 2.9e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G +Gp G Gp+G pG+ G +G pG+ G pGe+GpPG G G+ tem12gi|31 2038 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGF 2084 pGppGapGapGpp<-* +G pG+ G +G + tem12gi|31 2085 QGCPGQRGVKGSR 2097 Collagen: domain 2 of 6, from 2104 to 2163: score 49.6, E = 3.8e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G+ G G+ G++G++G pG +G++G+pG +G++Gp G +G+ G tem12gi|31 2104 GEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD 2150 pGppGapGapGpp<-* G +G pG pG+ tem12gi|31 2151 VGIRGDPGNPGQD 2163 Collagen: domain 3 of 6, from 2166 to 2193: score 9.0, E = 0.54 *->apGppGppGepGpPGppGppGppGppGa<-* ++Gp+G G+ Gp G pG++G pG pG+ tem12gi|31 2166 ERGPKGETGDLGPMGVPGRDGVPGGPGE 2193 Collagen: domain 4 of 6, from 2195 to 2246: score 29.6, E = 1.2e-06 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G G++GppG++G++G pG++G+ G++G +G+ Gp Gp+GppG tem12gi|31 2195 GKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGL 2241 pGppG<-* G++G tem12gi|31 2242 IGEQG 2246 Collagen: domain 5 of 6, from 2249 to 2300: score 32.8, E = 1.6e-07 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+G+ G++G+pG++G+ Gp G +G+pG+pGp+G G PGp+G+ G tem12gi|31 2249 GPRGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGD 2295 pGppG<-* G +G tem12gi|31 2296 DGRDG 2300 Collagen: domain 6 of 6, from 2314 to 2373: score 50.6, E = 2e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG pGp+G pG+pG G +Gp+G +G +G++G+pG G++G+pG tem12gi|31 2314 GFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGY 2360 pGppGapGapGpp<-* pGp+G+ G G tem12gi|31 2361 PGPAGPRGNRGDS 2373 Basic: domain 1 of 1, from 2464 to 2471: score 0.4, E = 68 *->KRKsvsvD<-* KRKsv D tem12gi|31 2464 KRKSVLLD 2471 formyl_transf: domain 1 of 1, from 2509 to 2529: score 2.0, E = 21 *->mkiavliSGtgsnlqalldal<-* +k+av++S t++ ++++l ++ tem12gi|31 2509 RKVAVFFSNTPTRASPQLREA 2529 vwa: domain 10 of 12, from 2402 to 2581: score 85.6, E = 4.6e-24 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg +++F lD S+ + ++ F r++d v +v+ L+++++++ ++++rV+ tem12gi|31 2402 ELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNC--PTGARVA 2446 lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq +v+Y+++v+tE + ++d+++k+ +l+++++++ ++ ++ + +A+ tem12gi|31 2447 VVTYNNEVTTE--IRFADSKRKSVLLDKIKNLQV--ALTSKQQSLETAMS 2492 yvvrnlft.easGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvl +v+rn f++ ++G ++kv+V+++ +++ +p ++r+++ tem12gi|31 2493 FVARNTFKrVRNGF--------LMRKVAVFFSNTPTRASP----QLREAV 2530 nelkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtl +l + ag+++ + ++ d ++l + +I + ++ h++ + ++L + tem12gi|31 2531 LKLSD-AGITPLFLT-RQED-RQLINALQINNTAVGHALVLPAGRDLTDF 2577 qelL<-* e + tem12gi|31 2578 LENV 2581 actin: domain 1 of 1, from 2570 to 2583: score -2.8, E = 91 *->AGRDLtdylmkiLt<-* AGRDLtd+l +Lt tem12gi|31 2570 AGRDLTDFLENVLT 2583 zf-C3HC4: domain 1 of 1, from 2584 to 2594: score 0.5, E = 77 *->CpICltTFdldepkpfk<-* C++C ld+ ++++ tem12gi|31 2584 CHVC-----LDI-CNID 2594 RecR: domain 1 of 1, from 2565 to 2595: score 2.0, E = 82 *->aevlrLAkaLleAkerlgyCsvCgaltdeev<-* a vl + L++ +e++ +C vC +++ ++ tem12gi|31 2565 ALVLPAGRDLTDFLENVLTCHVCLDICNIDP 2595 Leptin: domain 1 of 1, from 2645 to 2655: score -0.8, E = 86 *->mLrqLDlsPgC<-* ++rqLD+sP+ tem12gi|31 2645 LVRQLDMSPDP 2655 vwa: domain 11 of 12, from 2619 to 2668: score 7.8, E = 0.35 *->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeeda.vrV D +F+lD+ + F+++K + +v +Ld +p d+k++++ +rV tem12gi|31 2619 DMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSP-DPKASQHfARV 2664 glvQ<-* ++vQ tem12gi|31 2665 AVVQ 2668 CN_hydrolase: domain 1 of 1, from 2661 to 2676: score -0.8, E = 57 *->kvkvAavQaapvlvteDla<-* ++vA+vQ+ap e+++ tem12gi|31 2661 FARVAVVQHAP---SESVD 2676 DUF24: domain 1 of 1, from 2682 to 2693: score 4.7, E = 4 *->PpkVEYSLTekG<-* P+kVE SLT++G tem12gi|31 2682 PVKVEFSLTDYG 2693 Na_K_ATPase_C: domain 1 of 1, from 2750 to 2770: score -0.7, E = 84 *->qeWtyeqRkaLeytcyTAFFi<-* q++ + qR +L++ c + FF+ tem12gi|31 2750 QQLEEAQRVILQAKCKGYFFV 2770 vwa: domain 12 of 12, from 2683 to 2809: score 35.7, E = 2.1e-09 *->vrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALqyvvr v++E f+l dy +k+++ + l++ + +++ g +g+A+ y+++ tem12gi|31 2683 VKVE--FSLTDYGSKEKLVDFLSRGM---TQLQGTRALGSAIEYTIE 2724 nlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvlnelkk n+f a +R + + v+++lT+ + + ++ ++v+ ++k tem12gi|31 2725 NVFESAPNPR-------DLKIVVLMLTGEVPEQQLEE---AQRVILQAKC 2764 eagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtlqelL +g+ +++G+G +n +e+ +As+p + ++ v+ +++L +e+L tem12gi|31 2765 -KGYFFVVLGIGRKVN--IKEVYTFASEPNdVFFKLVDKSTELN--EEPL 2809 <-* tem12gi|31 - - FARP: domain 1 of 1, from 2804 to 2814: score 9.2, E = 0.31 *->srdkrfmRFGR<-* ++++ mRFGR tem12gi|31 2804 LNEEPLMRFGR 2814 Tissue_fac: domain 1 of 1, from 2962 to 2979: score -1.2, E = 96 *->MatpvrprvPrPetAvartl<-* + ++p vPrP++A ++++ tem12gi|31 2962 --VATKPEVPRPQAAKPAAT 2979 fn3: domain 1 of 1, from 2998 to 3058: score 6.4, E = 2.2 *->dvtstsltlsWspptgngpitgYevtyRqpkngge.wneltvpgttt ++t++s+ l+W++p+ Y +t+ ++ +++ ++++ t tem12gi|31 2998 EITENSAKLHWERPE-PPGPYFYDLTV-TSAHDQSlVLKQNLTVTD- 3041 sytltgLkPgteYevrVq<-* ++ gL +g +Y+v V+ tem12gi|31 3042 -RVIGGLLAGQTYHVAVV 3058 Barwin: domain 1 of 1, from 3062 to 3070: score 3.3, E = 6.1 *->sasnVraTYH<-* s+VraTYH tem12gi|31 3062 -RSQVRATYH 3070 Peptidase_C13: domain 1 of 1, from 3060 to 3110: score -0.6, E = 53 *->yisklklvlftgff..pavsNftivdepplrkplevvnqrDadLhtl y++ ++ +++g+f++++++ ++++ p+ r+ ++++ + L + tem12gi|31 3060 YLRSQVRATYHGSFstKKSQ--PPPPQPA-RSASSST----INLMVS 3099 wrkyqlanngsek<-* ++++ l++ ++ tem12gi|31 3100 TEPLALTE--TDI 3110 Kunitz_BPTI: domain 1 of 1, from 3111 to 3161: score 94.1, E = 2e-29 *->CslPpdtGptkcpCkggnfarywRwYYdpatgktTkCepFtYgGCgG C lP+d+G C+ + + +wYYdp+t++ C +F+YgGCgG tem12gi|31 3111 CKLPKDEGT----CR----DFILKWYYDPNTKS---CARFWYGGCGG 3146 NaNNFetkeeCertC<-* N+N F +++eCe+ C tem12gi|31 3147 NENKFGSQKECEKVC 3161 // Start with Repeat Library (from /data/patterns/repeats-Miguel-Andrade/hmm) hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/patterns/repeats-Miguel-Andrade/hmm/repeats.hmm-lib Sequence file: tem12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- [no hits above thresholds] Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- [no hits above thresholds] Alignments of top-scoring domains: [no hits above thresholds] // ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ Start with Prosite --------------------------------------------------------- | ppsearch (c) 1994 EMBL Data Library | | based on MacPattern (c) 1990-1994 R. Fuchs | --------------------------------------------------------- PROSITE pattern search started: Fri Nov 10 10:04:14 2000 Sequence file: tem12 ---------------------------------------- Sequence tem12gi|3127926|emb|CAA36267.1| (3176 residues): Matching pattern PS00001 ASN_GLYCOSYLATION: 108: NMSY 116: NQTG 202: NFTS 251: NNTG 2079: NGTQ 2331: NGTT 2558: NNTA 2677: NASM 2861: NVTS 3036: NLTV Total matches: 10 Matching pattern PS00004 CAMP_PHOSPHO_SITE: 573: KRSS 1651: RRDS 2464: KRKS Total matches: 3 Matching pattern PS00005 PKC_PHOSPHO_SITE: 95: TYR 118: TGK 231: TLK 300: STK 492: TVR 504: TKR 635: SNK 834: SKR 910: TGK 953: SDR 1073: SDR 1190: TFR 1202: SER 1268: TTR 1290: SSK 1345: SGK 1393: TFR 1422: STR 1492: TYR 1516: TGK 1595: TVR 1697: STK 1698: TKR 1767: TQR 1884: TVR 1929: TLK 1944: SVK 2194: TGK 2382: SIK 2463: SKR 2481: TSK 2498: TFK 2601: SWR 2605: SFR 2873: TTK 2879: TTK 2886: TTK 2893: TTK 2904: SVK 2929: TVR 2983: TTK 3003: SAK 3040: TDR 3074: STK 3075: TKK 3119: TCR 3153: SQK Total matches: 47 Matching pattern PS00006 CK2_PHOSPHO_SITE: 49: TIGE 98: TKQE 205: SLHD 231: TLKD 236: TAQD 340: SRVE 358: SSDE 385: SRAE 401: TVPE 407: SFGD 504: TKRE 527: SALD 561: SLDE 698: TKSD 834: SKRD 888: SRFD 895: SKPE 934: SRIE 1076: TRPE 1144: SGDD 1209: TREE 1253: TLIE 1290: SSKD 1291: SKDE 1330: SRIE 1348: SDDE 1393: TFRE 1534: SRIE 1552: SQDD 1595: TVRE 1631: SRPE 1654: SFQE 1668: TVYE 1737: SRLD 1755: SVED 1815: TLHD 1860: SKVD 1940: SSPD 2126: SSGE 2293: TGDD 2382: SIKD 2433: TIAE 2544: TRQE 2605: SFRD 2614: SDVD 2688: SLTD 2717: SAIE 2964: TKPE 3025: SAHD 3038: TVTD 3106: TETD 3119: TCRD 3153: SQKE Total matches: 53 Matching pattern PS00008 MYRISTYL: 85: GNPHTE 114: GTNQTG 135: GSRAGD 176: GVEDAD 211: GNLVSC 249: GSNNTG 307: GAVKAL 316: GGELAN 380: GAQAAS 583: GNKGAD 586: GADQAE 615: GMLPGL 714: GSGLNT 716: GLNTGS 720: GSALSY 777: GASQAN 872: GTRIAV 1039: GVRSGF 1125: GSRITE 1164: GIGIGN 1166: GIGNAD 1240: GSQSAG 1511: GSPLNT 1713: GGRHAN 1827: GVTDAA 2077: GVNGTQ 2092: GVKGSR 2122: GLPGSS 2207: GAKGNK 2225: GTRGAQ 2252: GSGGAR 2254: GGARGA 2329: GLNGTT 2442: GARVAV 3045: GGLLAG 3046: GLLAGQ 3071: GSFSTK 3142: GGCGGN 3143: GCGGNE 3145: GGNENK Total matches: 40 Matching pattern PS00009 AMIDATION: 1229: GGKR 2133: PGRR 2200: FGRR 2269: LGRK 2304: EGRR 2307: RGKK 2340: RGRR 2774: IGRK Total matches: 8 Matching pattern PS00016 RGD: 2040: RGD 2136: RGD 2148: RGD 2154: RGD 2370: RGD Total matches: 5 Matching pattern PS00017 ATP_GTP_A: 646: GSANVGKT Total matches: 1 Matching pattern PS00280 BPTI_KUNITZ: 3139: FWYGGCGGNENKFGSQKEC Total matches: 1 Total no of hits in this sequence: 168 ======================================== 1314 pattern(s) searched in 1 sequence(s), 3176 residues. Total no of hits in all sequences: 168. Search time: 00:00 min ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ Start with Profile Search ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ Start with motif search against own library ***** bioMotif : Version V41a DB, 1999 Nov 11 ***** argv[1]=P argv[2]=-m /data/patterns/own/motif.fa argv[4]=-seq tem12 ***** bioMotif : Version V41a DB, 1999 Nov 11 ***** SeqTyp=2 : PROTEIN search; >APC D-Box is the MOTIF name >STATISTICS Total : 0 solutions in 0 sequences, 0 units; out of 1 sequences, 3176 units ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~ ~~~ Start with HMM-search search against own library hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/patterns/own/own-hmm.lib Sequence file: tem12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- [no hits above thresholds] Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- [no hits above thresholds] Alignments of top-scoring domains: [no hits above thresholds] // hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/patterns/own/own-hmm-f.lib Sequence file: tem12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- [no hits above thresholds] Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- [no hits above thresholds] Alignments of top-scoring domains: [no hits above thresholds] // ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ L. Aravind's signalling DB IMPALA version 1.1 [20-December-1999] Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999), "IMPALA: Matching a Protein Sequence Against a Collection of "PSI-BLAST-Constructed Position-Specific Score Matrices", Bioinformatics 15:1000-1011. Query= tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] (3176 letters) Searching..................................done Results from profile search Score E Sequences producing significant alignments: (bits) Value VWA Von Willebrand factor A domain 137 3e-34 FN3 Fibronectin type III domain (Protein-protein interation ... 44 2e-06 INSL Insulinase like Metallo protease domain 29 0.094 PUM Pumilio repeat RNA binding domain 28 0.17 ARM Armadillo repeat 27 0.39 ACTIN Actin ATPase/ Cytoskeletal ATPase domain 27 0.39 PX PX domain 25 1.6 CYCLIN Cyclin/TFIIB domain 25 1.8 RASGEF RAS-type GTPase GDP exchange factor 25 1.8 MYB MYB domain(HTH DNA binding domain) 24 2.0 HSF Heat Shock Factor Domain (Winged helix type DNA binding ... 25 2.3 SEC14D Sec14 related lipid binding domain 24 2.3 HISDAC Histone deacetylase domain 24 2.7 AP2 A plant specific DNA binding domain (Apetala 2 like) 24 4.0 RING RING finger domain 23 4.0 UBHYD Ubiquitin C-terminal hydrolase domain 23 4.4 DHHC Novel zinc finger domain with DHHC signature 23 6.1 PDZ PDZ domain (A protein-protein interaction domain) 23 6.5 PAP Papain/bleomycin hydrolase like domain 23 6.7 PCNA Proliferating Cell nuclear antigen like domain 23 6.9 PP2C PP2C type phosphatase domain 23 6.9 POZ Pox virus Zinc finger domain (Also called BTB domain; a... 23 7.4 RASGAP RAS-type GTPase GTP hydrolysis activating protein 23 7.4 UBA Ubiquitin pathway associated domain 23 7.5 S1 S1 RNA binding domain 23 8.5 >VWA Von Willebrand factor A domain Length = 255 Score = 137 bits (342), Expect = 3e-34 Identities = 29/223 (13%), Positives = 67/223 (30%), Gaps = 24/223 (10%) Query: 405 FRSFGDLQEKLLPYIVGVAQRHIVLKPPTIV----TQVIEVNKRDIVFLVDGSSALGLAN 460 RS+ ++ + + + + T R ++ +D S A+ + Sbjct: 11 KRSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKD 70 Query: 461 FNAIRDFIAK-----VIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKM 515 R + + + Q+ + + + + ++ I A++ + Sbjct: 71 LRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGL-AQLVSQVSGNPQDHIDALKSI 129 Query: 516 KPL-DGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLD--EISQPAQEL 572 + +AL+ R L A ++L++ + D +I Q L Sbjct: 130 RKQEPKGNPSLQNALEMARGLL-----LPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSL 184 Query: 573 KRSSIMAFAIGNKGADQAELEEIA-----FDSSLVFIPAEFRA 610 I +G A A +E+ D S I + Sbjct: 185 VSEKIRVKVLG-LSAQVAICKELCKATNYGDESFYKILLDETH 226 Score = 130 bits (325), Expect = 2e-32 Identities = 26/196 (13%), Positives = 57/196 (28%), Gaps = 18/196 (9%) Query: 32 VKNGAAADIIFLVDSSWTIGEEHF-----QLVREFLYDVVKSLAVGENDFHFALVQF-NG 85 + G +I +D S + E+ ++ ++ D V ++ NG Sbjct: 48 YQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNG 107 Query: 86 NPHTEFLLNT-YRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQ 144 ++ + + L I G + LE + Sbjct: 108 LAQLVSQVSGNPQDHIDALKSIRKQEPKGNPS-LQNALEMAR-----GLLLPVPAHCTRE 161 Query: 145 VIVVLTDGHSKDGLAL--PSAELKSADVNVFAIGVEDADEGALKEI--ASEPLNMHMFNL 200 V++V + D + L S + V +G+ A KE+ A+ + + + Sbjct: 162 VLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGL-SAQVAICKELCKATNYGDESFYKI 220 Query: 201 ENFTSLHDIVGNLVSC 216 + + N Sbjct: 221 LLDETHLKELFNEAVT 236 Score = 127 bits (318), Expect = 2e-31 Identities = 33/203 (16%), Positives = 72/203 (35%), Gaps = 22/203 (10%) Query: 630 TPEVHSNKRDIIFLLDGSANVGKTNFPYVR-----DFVMNLVNSLDIGNDNIRVGLVQFS 684 TP R +I LD S + + + R + ++ V+ N ++G++ Sbjct: 46 TPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMR 105 Query: 685 DT-PVTEFSLNT-YQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREH 742 + ++ Q D L +R+ + +G + +AL Sbjct: 106 NGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNP--SLQNALEMAR-----GLLLPVPAHC 158 Query: 743 VPQLLLLLTAGQSEDSY--LQAANALTRAGILTFCVGASQANKAELEQIA-----FNPSL 795 ++L++ + + D Q ++L I +G S A A +++ + S Sbjct: 159 TREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLS-AQVAICKELCKATNYGDESF 217 Query: 796 VYLMDDFSSLPALPQQLIQPLTT 818 ++ D + L L + + PL Sbjct: 218 YKILLDETHLKELFNEAVTPLPV 240 Score = 114 bits (285), Expect = 1e-27 Identities = 25/231 (10%), Positives = 69/231 (29%), Gaps = 30/231 (12%) Query: 1194 LGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPE------ 1247 V ++ R + ++ ++ Q G R ++ +D S++ + Sbjct: 26 ASLVASIVEARKKRTAKKNITPYQR----------GIIRSLILTLDCSEAMLEKDLRPNR 75 Query: 1248 FQYVRTLIERLVDYLDVGFDTTRVAVIQFSD-DPKAEFLLNAHSSKDEVQNAVQRLRPKG 1306 + V +++ +I + + ++ + R + Sbjct: 76 HAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPK 135 Query: 1307 GRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD--EVVVPAVELKQFGV 1364 G ++ NALE + P + L++ S + D ++ L + Sbjct: 136 GN-PSLQNALEMARGLLLPVPAH-----CTREVLIVFGSLSTTDPGDIHQTIDSLVSEKI 189 Query: 1365 APFTIARNADQEELVKISLSPE-----YVFSVSTFRELPSLEQKLLTPITT 1410 + +A ++ + + + L L + +TP+ Sbjct: 190 RVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPV 240 Score = 97.4 bits (240), Expect = 2e-22 Identities = 31/215 (14%), Positives = 66/215 (30%), Gaps = 25/215 (11%) Query: 1639 DIVFLLDGS-----INFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQY-NSDPTDEFF 1692 ++ LD S + R + ++++ + V ++ Q+G++ N Sbjct: 55 SLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQ 114 Query: 1693 LKDFST-KRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVIT 1751 + + +I K KG + + LE R ++ V Sbjct: 115 VSGNPQDHIDALKSIRKQEPKGN--PSLQNALEMARGL-----LLPVPAHCTREVLIVFG 167 Query: 1752 GGKSVE--DAQDVSLALTQRGVKVFAVGV-RNIDSEEVGKIASNSATAFRVGNVQELSEL 1808 + + D +L ++V +G+ + + A+N + + + L Sbjct: 168 SLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHL 227 Query: 1809 SEQVLETLHDAMHETLCPGVTDAAKACNLDVILGF 1843 E E V K L V +GF Sbjct: 228 KELFNE-------AVTPLPVNKINKGFTL-VKMGF 254 Score = 89.2 bits (219), Expect = 6e-20 Identities = 24/213 (11%), Positives = 67/213 (31%), Gaps = 27/213 (12%) Query: 208 DIVGNLVSCV-HSSVSPERAGDTETLKDITAQDSADIIFLIDGSNNTGSVNF-----AVI 261 D G++ S V + ++ + + +I +D S + A+I Sbjct: 20 DDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMI 79 Query: 262 LDFLVNLLEKLPIGTQQIRVGVVQFSDE-PRTMFSLDTYST-KAQVLGAVKALGFAGGEL 319 + + ++ + + ++G++ + + + + L +++ G Sbjct: 80 IQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGN-- 137 Query: 320 ANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVA--LKQASV--F 375 ++ AL+ +VL++ + ++D L + Sbjct: 138 PSLQNALEMARGLLLPVPAH-----CTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVK 192 Query: 376 SFGLGAQAASRAELQHIAT-----DDNLVFTVP 403 GL AQ A + + D++ + Sbjct: 193 VLGLSAQ---VAICKELCKATNYGDESFYKILL 222 Score = 88.4 bits (217), Expect = 1e-19 Identities = 20/162 (12%), Positives = 54/162 (32%), Gaps = 20/162 (12%) Query: 1028 KDVVFLLDGSEGVRSG------FPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRT-RPEF 1080 + ++ LD SE + ++ ++ V ++ ++ + + Sbjct: 54 RSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVS 113 Query: 1081 YLNSYMNKQDVVNAVRQLTLL--GGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIV 1138 ++ N QD ++A++ + G + ALE + ++LIV Sbjct: 114 QVSG--NPQDHIDALKSIRKQEPKGNP-SLQNALEMARGLL-----LPVPAHCTREVLIV 165 Query: 1139 LTADRSGD--DVRNPSVVVKRGGAVPIGIGIGNADITEMQTI 1178 + + D D+ + +G+ A + + + Sbjct: 166 FGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLS-AQVAICKEL 206 Score = 86.5 bits (212), Expect = 5e-19 Identities = 27/183 (14%), Positives = 54/183 (28%), Gaps = 20/183 (10%) Query: 1436 DIVFLIDSSEGVRPDGFAHIR-----DFVSRIVRRLNIGPSKVRVGVVQFSN-DVFPEFY 1489 ++ +D SE + R + V ++G++ N Sbjct: 55 SLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQ 114 Query: 1490 LKT-YRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVL 1548 + + L +IR+ +G + ALE L + L++ Sbjct: 115 VSGNPQDHIDALKSIRKQEPKGNP--SLQNALEMARGLL-----LPVPAHCTREVLIVFG 167 Query: 1549 GGKSQD--DVSRFAQVIRSSGIV--SLGVGDRNIDRTELQTITNDP--RLVFTVREFREL 1602 + D D+ + + S I LG+ + EL TN + + L Sbjct: 168 SLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHL 227 Query: 1603 PNI 1605 + Sbjct: 228 KEL 230 Score = 76.3 bits (186), Expect = 6e-16 Identities = 16/167 (9%), Positives = 58/167 (34%), Gaps = 16/167 (9%) Query: 831 QPESKRDILFLFDGSANLVGQ------FPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDV 884 Q R ++ D S ++ + ++ + + E + +++ + + + Sbjct: 49 QRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGL 108 Query: 885 KVESRFDEHQSKPEILNLVKRMKIKT-GKALNLGYALDYAQRYIFVKSAGSRIEDGVLQF 943 + + + ++ +K ++ + +L AL+ A+ + + Sbjct: 109 -AQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLL-----LPVPAHCTREV 162 Query: 944 LVLLVAGRSSDRVD--GPASNLKQSGVVPFIFQAKNADPAELEQIVL 988 L++ + ++D D +L + + +A A +++ Sbjct: 163 LIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVL-GLSAQVAICKELCK 208 Score = 48.3 bits (114), Expect = 2e-07 Identities = 22/195 (11%), Positives = 58/195 (29%), Gaps = 27/195 (13%) Query: 2619 DMAFILDSAETTTLFQFNE-----MKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSE 2673 + LD +E + +Y V + +++ ++ Sbjct: 55 SLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPI------SQMGIIIMRNGL 108 Query: 2674 SVDNASMPPVKVEFSLT-DYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPN 2732 ++ ++ + + + R L +A+E + Sbjct: 109 ---------AQLVSQVSGNPQDHIDALKSI-RKQEPKGNPS-LQNALEMARGLLLPVP-A 156 Query: 2733 PRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPND 2792 +++++ + + + I + VLG+ +V I + A+ D Sbjct: 157 HCTREVLIVFGSLS--TTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGD 214 Query: 2793 V-FFKLVDKSTELNE 2806 F+K++ T L E Sbjct: 215 ESFYKILLDETHLKE 229 Score = 45.2 bits (106), Expect = 1e-06 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 8/140 (5%) Query: 2403 LAFALDTSEGVNQDTFGRMR-DVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRF- 2460 L LD SE + + R +++ + +++ ++ N + + Sbjct: 56 LILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQV 115 Query: 2461 -ADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTP 2519 + + L I+ + L+ A+ + R+V + F + Sbjct: 116 SGNPQDHIDALKSIRKQEPKGNPS---LQNALEMARGLLLPVPAHC--TREVLIVFGSLS 170 Query: 2520 TRASPQLREAVLKLSDAGIT 2539 T + + + L I Sbjct: 171 TTDPGDIHQTIDSLVSEKIR 190 Score = 37.8 bits (87), Expect = 2e-04 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 3/113 (2%) Query: 1882 SPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDT---LKVYLNKFR 1938 +P ++ ++ + ++ +++R Q P Sbjct: 94 NPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLP 153 Query: 1939 QSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERL 1991 + + +V+I F + D D+H+ ++L E +R +L +V + L Sbjct: 154 VPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKEL 206 >FN3 Fibronectin type III domain (Protein-protein interation domain) Length = 154 Score = 44.5 bits (104), Expect = 2e-06 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 2992 REVQVFEITENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQ 3051 ++ V +T L W+ P+ Y Y L + S H + + +T + GL+ G Sbjct: 5 FDIHVVYVTTTEMWLDWKSPDGASEYVYHLVIESKHGSNHTSTYDKAIT---LQGLIPGT 61 Query: 3052 TYHVAV 3057 Y++ + Sbjct: 62 LYNITI 67 Score = 40.2 bits (93), Expect = 4e-05 Identities = 14/67 (20%), Positives = 25/67 (36%), Gaps = 1/67 (1%) Query: 2994 VQVFEITENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTY 3053 V I+ S L W+ + Y + A ++ N++ VI GL + Y Sbjct: 83 VTAVNISATSLTLIWKVSDNESSSNYTYKIHVA-GETDSSNLNVSEPRAVIPGLRSSTFY 141 Query: 3054 HVAVVCY 3060 ++ V Sbjct: 142 NITVCPV 148 >INSL Insulinase like Metallo protease domain Length = 433 Score = 28.8 bits (64), Expect = 0.094 Identities = 16/134 (11%), Positives = 29/134 (20%), Gaps = 9/134 (6%) Query: 660 DFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDI-LGHLRQLQLQGGSGLN 718 V V + V VQ P I + G Sbjct: 214 KEVEEEVMKTFGKEEGRPVPKVQIPTEPEQIGIRFKKLKDPRIEKAYWIIGWRVPAIGKT 273 Query: 719 TGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGA 778 L V++ S + + L+ + + R I Sbjct: 274 DYKGLL-VFSEILCGGRISVFYRELREKGLVYSYSCGDMGR-------PRDNIFIITATF 325 Query: 779 SQANKAELEQIAFN 792 N ++++ F Sbjct: 326 PPENYEKVKKRVFE 339 Score = 25.3 bits (55), Expect = 1.4 Identities = 14/94 (14%), Positives = 27/94 (27%), Gaps = 1/94 (1%) Query: 227 GDTETLKDITAQDSADIIF-LIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQ 285 G ET++ T + N + V + + K + V VQ Sbjct: 177 GFEETIRKFTREKLLKFYKSFYQPRNMAVVIVGKVNPKEVEEEVMKTFGKEEGRPVPKVQ 236 Query: 286 FSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGEL 319 EP + ++ A +G+ + Sbjct: 237 IPTEPEQIGIRFKKLKDPRIEKAYWIIGWRVPAI 270 Score = 23.0 bits (49), Expect = 6.5 Identities = 7/58 (12%), Positives = 10/58 (17%), Gaps = 3/58 (5%) Query: 2838 WFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTK 2895 G K + + K P T+P P Sbjct: 206 VIVGKVNPKEVEEEVMKTF---GKEEGRPVPKVQIPTEPEQIGIRFKKLKDPRIEKAY 260 Score = 22.6 bits (48), Expect = 7.9 Identities = 18/158 (11%), Positives = 37/158 (23%), Gaps = 16/158 (10%) Query: 87 PHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGS----RAGDGV 142 + + + S I + + + L + R D + Sbjct: 259 AYWIIGWRVPAIGKTDYKGLLVFSEILCGGRISVFYRELREKGLVYSYSCGDMGRPRDNI 318 Query: 143 PQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDAD-EGALKEIASEPLNMHMFNLE 201 + + + LK + D E A I +N +F E Sbjct: 319 FIITATFPPENYEKVKKRVFELLKET-----YENLTDEQVEEAKSRI----INSRLFEEE 369 Query: 202 NFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQD 239 + +G + V + L + D Sbjct: 370 RVENDAFDIGYSYTVVRDLDFYRFF--DKNLSRVRRVD 405 >PUM Pumilio repeat RNA binding domain Length = 337 Score = 28.0 bits (62), Expect = 0.17 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 31/142 (21%) Query: 2689 LTDYGS---KEKLVDFLSRGMTQL----QGTRALGSAIEYTIENVFESAPNPRDLKIVVL 2741 L DY + K L+ + + Q+ GTR+L I+ N + +++ Sbjct: 68 LCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDT--------VDNEVQIDLIIK 119 Query: 2742 MLTGEVP----------EQQLEE-AQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEP 2790 + E + Q+ I + + F++ I + N + T ++ Sbjct: 120 GFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNN---IITISTHK 176 Query: 2791 N--DVFFKLVDKSTELNEEPLM 2810 + V KL+ T + Sbjct: 177 HGCCVLQKLLSVCTLQQIFKIS 198 >ARM Armadillo repeat Length = 532 Score = 26.9 bits (59), Expect = 0.39 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Query: 1 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVRE 60 + ++ + C +S + Q Q V+ + ++ L+ ++ F + +E Sbjct: 335 LTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNA------EFDIKKE 388 Query: 61 FLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLN--TYRTKQEVLSHISNMSYIGGTNQ 117 + + + + G +D LV+ LL R L + N+ +G + Sbjct: 389 AAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEK 447 >ACTIN Actin ATPase/ Cytoskeletal ATPase domain Length = 376 Score = 26.8 bits (59), Expect = 0.39 Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 22/43 (51%) Query: 2570 AGRDLTDFLENVLT----------------------CHVCLDI 2590 AGRDLTD L +LT +V LD Sbjct: 182 AGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDY 224 >PX PX domain Length = 158 Score = 24.9 bits (54), Expect = 1.6 Identities = 17/148 (11%), Positives = 42/148 (27%), Gaps = 23/148 (15%) Query: 1559 FAQVIRSSGIVSLGVGDR-NIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSA 1617 F + I G + + + ++ ++V+ R+F E+ + + F A Sbjct: 5 FIRHIALLGFEKRFIPSQHYVYMFLVKWQDLSEKVVY--RKFTEIYEFHKMLKEMFPIEA 62 Query: 1618 ATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSF-----QEVLRFVSEIVDTVYED 1672 E + ++ L F + + + ++ + Sbjct: 63 G-----------EIHTENR---VIPHLPAPRWFDGQRAAESRQGTLTEYFNGLMGLPVKI 108 Query: 1673 GDSIQVGLVQYNSDPTDEFFLKDFSTKR 1700 + L + P D D K+ Sbjct: 109 SRCPHL-LDFFKVRPDDLKLPTDSQAKK 135 Score = 22.5 bits (48), Expect = 8.2 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%) Query: 1888 SVVANTPSGPVEAFD--FDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSV 1945 V+ + P P E + L ++ N P ++ L F + PD + Sbjct: 70 RVIPHLP-APRWFDGQRAAESRQGTLTEYFNGLMGLPVKISRCPH---LLDFFKVRPDDL 125 Query: 1946 KVV 1948 K+ Sbjct: 126 KLP 128 >CYCLIN Cyclin/TFIIB domain Length = 317 Score = 24.6 bits (53), Expect = 1.8 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 8/92 (8%) Query: 2619 DMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPK--------ASQHFARVAVVQHA 2670 ++ T L Q ++ K + LV++ + + H A +A+ Sbjct: 226 LSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVIT 285 Query: 2671 PSESVDNASMPPVKVEFSLTDYGSKEKLVDFL 2702 K + + + LV+ L Sbjct: 286 KKRKGYEDDDYVSKKSKHEEEEWTDDDLVESL 317 >RASGEF RAS-type GTPase GDP exchange factor Length = 196 Score = 24.8 bits (54), Expect = 1.8 Identities = 8/24 (33%), Positives = 12/24 (49%) Query: 195 MHMFNLENFTSLHDIVGNLVSCVH 218 H +NF +L +I+ L S V Sbjct: 96 DHCRTFQNFNTLMEIILALSSSVV 119 >MYB MYB domain(HTH DNA binding domain) Length = 122 Score = 24.5 bits (53), Expect = 2.0 Identities = 6/52 (11%), Positives = 11/52 (20%) Query: 2509 RKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNT 2560 R + R R I + +E+ +I Sbjct: 38 RTLPKNAGTCLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSFLGN 89 >HSF Heat Shock Factor Domain (Winged helix type DNA binding domain) Length = 112 Score = 24.5 bits (53), Expect = 2.3 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%) Query: 1459 VSRIVRRLNI-GPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1505 S +R+LN G KV +F+N+ F Q +L I+R Sbjct: 52 FSSFIRQLNTYGFRKVDPDRWEFANEGF-------LGGQKHLLKTIKR 92 >SEC14D Sec14 related lipid binding domain Length = 248 Score = 24.5 bits (53), Expect = 2.3 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 18/94 (19%) Query: 1901 FDFDEYQPEMLEKFRNMRSQHPYV---LTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADG 1957 F+ E+L + N R Q+P + L+ + ++ + V+ D G Sbjct: 36 FNVGRAY-ELLRGYVNFRLQYPELFDSLSPEAVRCTIEAG-------YPGVLSSRD-KYG 86 Query: 1958 -----DLADLHRASENLRQEGVRALILVGLERVV 1986 + ++ E E ++A + LE+++ Sbjct: 87 RVVMLFNIENWQSQEITFDEILQAYCFI-LEKLL 119 >HISDAC Histone deacetylase domain Length = 433 Score = 24.1 bits (52), Expect = 2.7 Identities = 13/87 (14%), Positives = 30/87 (33%), Gaps = 11/87 (12%) Query: 275 GTQQIRVGVVQFSDEPRTMF-SLDTYSTKAQVLGAVKALGFAGGELANIGLAL-DFVVEN 332 G ++ F R M S Y G ++ +G G+ + + L D + + Sbjct: 192 GVEEA------FYTTDRVMTCSFHKYGEFFPGTGELRDIGVGAGKNYAVNVPLRDGIDDA 245 Query: 333 HFTRAGGSRVEEGVPQV---LVLISAG 356 + +++ + V++ G Sbjct: 246 TYRSVFEPVIKKIMEWYQPSAVVLQCG 272 >AP2 A plant specific DNA binding domain (Apetala 2 like) Length = 218 Score = 23.6 bits (50), Expect = 4.0 Identities = 3/34 (8%), Positives = 15/34 (43%) Query: 3061 LRSQVRATYHGSFSTKKSQPPPPQPARSASSSTI 3094 + S+ ++ S ++++ +P + + + Sbjct: 2 IASESTKSWEASAVRQENEEEKKKPVKDSGKHPV 35 >RING RING finger domain Length = 48 Score = 23.4 bits (50), Expect = 4.0 Identities = 5/23 (21%), Positives = 9/23 (38%), Gaps = 2/23 (8%) Query: 2376 QCALIQSIKDKCPCCYGPLECPV 2398 C +++ +CP C P Sbjct: 24 GC--LEASGMQCPICQAPWPLGA 44 Score = 23.4 bits (50), Expect = 5.1 Identities = 4/14 (28%), Positives = 6/14 (42%) Query: 2386 KCPCCYGPLECPVF 2399 +C C +CP Sbjct: 1 RCQQCQAEAKCPKL 14 >UBHYD Ubiquitin C-terminal hydrolase domain Length = 884 Score = 23.5 bits (50), Expect = 4.4 Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 2628 ETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEF 2687 + T+L + E+K + ++ D+S D + +V DN+ +P K F Sbjct: 510 QDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYF 569 >DHHC Novel zinc finger domain with DHHC signature Length = 217 Score = 22.8 bits (48), Expect = 6.1 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%) Query: 2897 VTIINQPSVKPAAAK---PAPAKPVAAKP 2922 + I N+PS K A K APA+P P Sbjct: 4 MNICNKPSNKTAPEKSVWTAPAQPSGPSP 32 >PDZ PDZ domain (A protein-protein interaction domain) Length = 90 Score = 22.9 bits (49), Expect = 6.5 Identities = 9/48 (18%), Positives = 14/48 (28%) Query: 2167 RGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGG 2214 + G LG G + + + G F P + K G Sbjct: 4 EFGQVRRGLLGIKGGELNADLAKAFNVSAQQGAFVSEVLPKSAAEKAG 51 >PAP Papain/bleomycin hydrolase like domain Length = 376 Score = 22.7 bits (48), Expect = 6.7 Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 1887 VSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQH 1921 V+ +A GP+ A D E+ E F+ + Q Sbjct: 15 VAGLAQGIRGPLRAQDLGPQPLELKEAFKLFQIQF 49 >PCNA Proliferating Cell nuclear antigen like domain Length = 280 Score = 22.9 bits (49), Expect = 6.9 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 1350 DEVVVPAVELKQFGVAPFTIARNADQ-EELVKISLSPE-YVFSVSTFRELPSLEQKLLTP 1407 +++++ + L++ D ++++I++SP+ F +STF + Sbjct: 154 NKIILQSEGLRE-------AFSELDMTGDVLQITVSPDKPYFRLSTFGNAGNSHLDYPKD 206 Query: 1408 ITTLTSEQIQKLLAST 1423 + + K + Sbjct: 207 SDLVEAFHCNKTQVNR 222 Score = 22.5 bits (48), Expect = 8.8 Identities = 5/21 (23%), Positives = 8/21 (37%) Query: 1933 YLNKFRQSSPDSVKVVIHFTD 1953 L ++ S KV I + Sbjct: 227 LLKPSTKALALSCKVSIRTDN 247 >PP2C PP2C type phosphatase domain Length = 254 Score = 23.0 bits (49), Expect = 6.9 Identities = 6/85 (7%), Positives = 23/85 (27%), Gaps = 12/85 (14%) Query: 1277 SDDPKAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNI----FKRPLGSRI 1332 + + E + H+ + + P + + + + + + Sbjct: 131 LRNQQLERVTEDHTWVARAL-KMGDIDPAQAKVHPWRHV---LFQCLGRQDLNFIEVEAL 186 Query: 1333 EEGVPQFLVLISSG----KSDDEVV 1353 + ++ S G D+ + Sbjct: 187 DAQPGDTFMMCSDGLTEEVPDNLIE 211 >POZ Pox virus Zinc finger domain (Also called BTB domain; a protein-protein interaction domain) Length = 229 Score = 22.8 bits (48), Expect = 7.4 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 11/99 (11%) Query: 12 VFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAV 71 L+ T ++ + L+D +HF + +L D +L Sbjct: 41 TTVRALTRHDTMLKAMFSGRMEVLTDKEGWILID----RCGKHFGTILNYLRDDTITLPQ 96 Query: 72 GENDFH--FALVQFNGNPH-----TEFLLNTYRTKQEVL 103 + A ++ L + + Q V Sbjct: 97 NRQEIKELMAEAKYYLIQGLVNMCQSALQDKKDSYQPVC 135 >RASGAP RAS-type GTPase GTP hydrolysis activating protein Length = 292 Score = 22.8 bits (48), Expect = 7.4 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 22/172 (12%) Query: 1739 LDQRVPQIAFVITGGKSVEDAQDVSLALTQ--RGVKVFAVGVRNIDSEEVGKIASNSATA 1796 +DQR ++ V G+ V +V+ L + + A ++ + E+ + ++ T Sbjct: 35 VDQRPITVSAVSILGELVSGKTEVAQPLVRLFTHTERIAPIIKALADHEISHL-TDPTTI 93 Query: 1797 FRVGNVQELSELSEQV-LETLHDAMHETLCPGVTDAA---KACNLDVILGFDGSR-DQNV 1851 FR GN + E + L LH +H+TL P ++ K C +D D S D N+ Sbjct: 94 FR-GNTLVSKMMDEAMRLSGLH-YLHQTLRPVLSQIVAEKKPCEIDPSKIKDRSAVDTNL 151 Query: 1852 FVAQKGFESKVDAILNRISQMHRV---------SCSGGRSPT---VRVSVVA 1891 Q E +AI + +V C+G P+ VR SVV+ Sbjct: 152 HNLQDYVERVFEAITKSADRCPKVLCQIFHDLRECAGEHFPSNREVRYSVVS 203 >UBA Ubiquitin pathway associated domain Length = 255 Score = 22.7 bits (48), Expect = 7.5 Identities = 12/28 (42%), Positives = 12/28 (42%) Query: 2216 GQPGFEGEQGTRGAQGPAGPAGPPGLIG 2243 G G GT G A GPPG IG Sbjct: 102 GGNASSGALGTTGGATDAAQGGPPGSIG 129 >S1 S1 RNA binding domain Length = 305 Score = 22.6 bits (48), Expect = 8.5 Identities = 12/127 (9%), Positives = 33/127 (25%), Gaps = 20/127 (15%) Query: 947 LVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELE-QIVLSPAFILAAESLPKIGDL 1005 + D + + Q + A+ + + + G++ Sbjct: 141 FIPRSHLMHKDNMDALVGQVLKAHIL----EANQDNNKLVLTQRRIQQAESMGKIAAGNI 196 Query: 1006 HPQIVNLLKSVHNGAPAPVSGEKDVVFL-LDGSEGVRSGFPLLKEFVQRVVESLDVGQDR 1064 + + + VF+ ++G G+ + V + G Sbjct: 197 ---YEGKVAKI----------QPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFG-QA 242 Query: 1065 VRVAVVQ 1071 + V V + Sbjct: 243 ISVYVQE 249 Underlying Matrix: BLOSUM62 Number of sequences tested against query: 105 Number of sequences better than 10.0: 25 Number of calls to ALIGN: 43 Length of query: 3176 Total length of test sequences: 20182 Effective length of test sequences: 15939.0 Effective search space size: 49975505.9 Initial X dropoff for ALIGN: 25.0 bits Y. Wolf's SCOP PSSM IMPALA version 1.1 [20-December-1999] Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999), "IMPALA: Matching a Protein Sequence Against a Collection of "PSI-BLAST-Constructed Position-Specific Score Matrices", Bioinformatics 15:1000-1011. Query= tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens] (3176 letters) Searching.................................................done Results from profile search Score E Sequences producing significant alignments: (bits) Value gi|420193 [185..357] Integrin A (or I) domain 145 1e-35 gi|2582830 [161..353] Integrin A (or I) domain 144 2e-35 gi|2645090 [1..155] Integrin A (or I) domain 135 1e-32 gi|417325 [120..385] S-adenosyl-L-methionine-dependent methy... 30 0.70 gi|155099 [19..420] S-adenosyl-L-methionine-dependent methyl... 29 1.3 gi|2635679 [5..214] NAD(P)-binding Rossmann-fold domains 29 1.4 gi|886067 [7..235] beta-Roll 28 1.7 gi|2688351 [1..345] NAD(P)-binding Rossmann-fold domains 28 2.1 gi|126848 [26..185] Four-helical up-and-down bundle 28 2.2 gi|1805705 [1..215] NAD(P)-binding Rossmann-fold domains 28 2.4 gi|1477763 [233..705] Lipoxigenase, C-terminal domain 28 3.0 gi|2285879 [10..385] ATP-grasp 28 3.1 gi|2499489 [82..349] Phosphofructokinase 28 3.3 gi|999515 [1..176] NAD(P)-binding Rossmann-fold domains 27 3.3 gi|2500974 [303..458] Anticodon-binding (C-terminal) domain ... 27 3.7 gi|2506153 [10..236] NAD(P)-binding Rossmann-fold domains 27 4.1 gi|1168958 [24..474] Citrate synthase 27 4.4 gi|68234 [34..414] Citrate synthase 27 4.5 gi|116909 [47..259] S-adenosyl-L-methionine-dependent methyl... 27 4.8 gi|797337 [17..308] Periplasmic binding protein-like I 27 5.3 gi|2688670 [455..688] beta-Lactamase/D-ala carboxypeptidase 27 5.3 gi|1894762 [59..322] Periplasmic binding protein-like I 27 5.5 gi|133162 [12..305] 5' to 3' exonuclease 26 7.6 gi|436861 [24..196] Four-helical up-and-down bundle 26 7.9 gi|1169087 [44..365] Cysteine proteinases 26 9.0 gi|2635757 [51..326] Periplasmic binding protein-like II 26 9.2 gi|1123081 [41..288] Ribonuclease H-like motif 26 9.3 gi|1943833 [45..314] Metallo-dependent phosphatases 26 9.4 gi|1815643 [227..431] Metzincin-like 26 9.9 gi|1361319 [558..735] Aldehyde oxidoreductase, molybdemum co... 26 9.9 >gi|420193 [185..357] Integrin A (or I) domain Length = 173 Score = 145 bits (363), Expect = 1e-35 Identities = 36/174 (20%), Positives = 70/174 (39%), Gaps = 7/174 (4%) Query: 39 DIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVG-----ENDFHFALVQFNGNPHTEFLL 93 DI+FL+D S +GE++F VR F+ DV + L + + AL+Q+ + Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 94 NTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGH 153 + + +Y+ + G G+ + + ++ + A A V LTDG Sbjct: 61 PLTYNVTTIHEALERATYLNSFSHVGTGIVHAIN-NVVRGARGGARRHAELSFVFLTDGV 119 Query: 154 SKDG-LALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSL 206 + + L ++ +V + V + + S +F ++F SL Sbjct: 120 TGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173 Score = 123 bits (308), Expect = 3e-29 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 10/175 (5%) Query: 639 DIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGND-----NIRVGLVQFSDTPVTEFSL 693 DI+FLLDGS +G+ NF VR FV ++ L + N R+ L+Q+ + + Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 694 NTYQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAG 753 + I L + + G+ + + N A G R H + LT G Sbjct: 61 PLTYNVTTIHEALERATYLNS-FSHVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118 Query: 754 QSEDSYLQ-AANALTRAGILTFCVG-ASQANKAELEQIA-FNPSLVYLMDDFSSL 805 + + L+ + +++ + ++ V + L +I+ + + ++ DF SL Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173 Score = 109 bits (271), Expect = 6e-25 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 12/175 (6%) Query: 1233 DVVFLIDGSQSAGPE-FQYVRTLIERLVDYLDVGFD-----TTRVAVIQFSDDPKAEFLL 1286 D+VFL+DGS+ G + F VR +E + L + R+A++Q+ + + Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 1287 NAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSG 1346 + + A++R +VG + + N+ + G V ++ G Sbjct: 61 PLTYNVTTIHEALERATYLNSFS-HVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118 Query: 1347 KSDDEVVVPAV-ELKQFGVAPFTIA--RNADQEELVKISL-SPEYVFSVSTFREL 1397 + ++ + +V +++ V P +A + D + L KISL +F F L Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173 Score = 108 bits (268), Expect = 1e-24 Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 10/174 (5%) Query: 445 DIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQD-----LIQVAVAQYADTVRPEFYF 499 DIVFL+DGS LG NF+ +R F+ V +RL + + ++A+ QY + + F Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 500 NTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGG 559 + A+ + L+ + + G+ + NN+ + G V +T G Sbjct: 61 PLTYNVTTIHEALERATYLNSFS-HVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118 Query: 560 KSL-DEISQPAQELKRSSIMAFAIG-NKGADQAELEEIA-FDSSLVFIPAEFRA 610 + D + + +++ +++ + D L +I+ D + +F +F + Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDS 172 Score = 100 bits (249), Expect = 2e-22 Identities = 30/175 (17%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 242 DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGT-----QQIRVGVVQFSDEPRTMFSL 296 DI+FL+DGS G NF + F+ ++ +L + R+ ++Q+ + + + Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 297 DTYSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAG 356 + A++ + +++G + + N A G V ++ G Sbjct: 61 PLTYNVTTIHEALERATYLNSF-SHVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118 Query: 357 PS-SDEIRYGVVALKQA--SVFSFGLGAQAASRAELQHIATDDN-LVFTVPEFRS 407 + +D + V ++++ +G L I+ D +F +F S Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVG-GDVDMDVLTKISLGDRAAIFREKDFDS 172 Score = 99.0 bits (244), Expect = 9e-22 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 18/173 (10%) Query: 1029 DVVFLLDGSEGV-RSGFPLLKEFVQRVVESLDVGQD-----RVRVAVVQYSDRTRPEFYL 1082 D+VFLLDGSE + F ++ FV+ V L + + R+A++QY + + + Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 1083 NSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTAD 1142 N + A+ + T L + + G + + N++ + G + LT Sbjct: 61 PLTYNVTTIHEALERATYLNSFS-HVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118 Query: 1143 RSGDD-VRNPSVVVKRGGAVPIGIGIG-NADITEMQTIS--------FIPDFA 1185 +G+D + +++ VP + +G + D+ + IS DF Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFD 171 Score = 98.2 bits (242), Expect = 2e-21 Identities = 36/176 (20%), Positives = 67/176 (37%), Gaps = 12/176 (6%) Query: 1436 DIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIG-----PSKVRVGVVQFSNDVFPEFYL 1490 DIVFL+D SE + F +R FV + RRL + P R+ ++Q+ + + Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 1491 KTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGG 1550 + + +A+ R + G + N+ + G V + G Sbjct: 61 PLTYNVTTIHEALERATYLNSF-SHVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118 Query: 1551 KS-QDDVSRFAQVIRSSGI--VSLGVGDRNIDRTELQTITN-DPRLVFTVREFREL 1602 + D + +R + + VG ++D L I+ D +F ++F L Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGG-DVDMDVLTKISLGDRAAIFREKDFDSL 173 Score = 92.7 bits (228), Expect = 8e-20 Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 10/175 (5%) Query: 1639 DIVFLLDGSINFRRDSFQEVLRFVSEIVDTV-----YEDGDSIQVGLVQYNSDPTDEFFL 1693 DIVFLLDGS +F +V RFV ++ + +D + ++ L+QY S + Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 1694 KDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGG 1753 I +A+ + Y ++ G+ H N G + +T G Sbjct: 61 PLTYNVTTIHEALERATYLNSF-SHVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118 Query: 1754 KSVEDA-QDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSAT--AFRVGNVQEL 1805 + D+ ++ ++ ++ V V V +V S FR + L Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173 Score = 84.2 bits (206), Expect = 3e-17 Identities = 32/162 (19%), Positives = 62/162 (37%), Gaps = 9/162 (5%) Query: 837 DILFLFDGSANLVGQ-FPVVRDFLYKIIDEL-----NVKPEGTRIAVAQYSDDVKVESRF 890 DI+FL DGS L Q F VR F+ + L + P R+A+ QY + + F Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60 Query: 891 DEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAG 950 + I ++R + ++G + +A + + G V L G Sbjct: 61 PLTYNVTTIHEALERATYLNSFS-HVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118 Query: 951 RS-SDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPA 991 + +D ++ ++++ VVP + ++ + Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGD 160 Score = 80.3 bits (196), Expect = 5e-16 Identities = 30/177 (16%), Positives = 67/177 (36%), Gaps = 10/177 (5%) Query: 2403 LAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNC-PTGARVAVVTYNNEVTTEIRFA 2461 + F LD SE + + F ++R V + LT+A + P AR+A++ Y ++ ++ F Sbjct: 2 IVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAFP 61 Query: 2462 DSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNG--FLMRKVAVFFSNTP 2519 + + + + ++ + + T + N + R G VF ++ Sbjct: 62 LTYNVTTIHEALERATYL--NSFSHVGTGIVHAINNVVRGARGGARRHAELSFVFLTDGV 119 Query: 2520 TRASPQLREAVLKLSDAGITPLFL--TRQEDRQLINALQINNTAVGHALVLPAGRDL 2574 T + L E+V + + P + D ++ + + + L Sbjct: 120 T-GNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDR--AAIFREKDFDSL 173 Score = 68.6 bits (166), Expect = 1e-12 Identities = 27/186 (14%), Positives = 67/186 (35%), Gaps = 13/186 (6%) Query: 2619 DMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNA 2678 D+ F+LD +E F+++++++ + R+L ++ AR+A++Q+ Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDD-DPLNARMALLQYGSQ------ 53 Query: 2679 SMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKI 2738 + + + + + + L R T L +G+ I + I NV A Sbjct: 54 ----NQQQVAFPLTYNVTTIHEALER-ATYLNSFSHVGTGIVHAINNVVRGARGGARRHA 108 Query: 2739 VVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLV 2798 + + + + + + + V+ +G V++ + S + Sbjct: 109 ELSFVFLTDGVTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTK-ISLGDRAAIFRE 167 Query: 2799 DKSTEL 2804 L Sbjct: 168 KDFDSL 173 Score = 36.3 bits (83), Expect = 0.007 Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 15/162 (9%) Query: 1838 DVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGP 1897 D++ DGS + ++ F + + ++ ++ R++++ S Sbjct: 1 DIVFLLDGSER----LGEQNFHKVRRFVEDVSRRL-TLARRDDDPLNARMALLQYG-SQN 54 Query: 1898 VEAFDFDEYQ--PEMLEKFRNMRSQHPYVLTEDTLK-VYLNKFRQSS----PDSVKVVIH 1950 + F + E + + + N R + + + Sbjct: 55 QQQVAFPLTYNVTTIHEALERATYLNSFSHVGTGIVHAINNVVRGARGGARRHAELSFVF 114 Query: 1951 FTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLM 1992 TDG L + ++R++ V +V + V+++ L Sbjct: 115 LTDG-VTGNDSLEESVHSMRKQNVV-PTVVAVGGDVDMDVLT 154 >gi|2582830 [161..353] Integrin A (or I) domain Length = 193 Score = 144 bits (362), Expect = 2e-35 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 17/190 (8%) Query: 39 DIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRT 98 DI+ ++D S +I ++ V FL +++++ +G +VQ+ EF LNTY T Sbjct: 2 DIVIVLDGSNSIYP--WESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59 Query: 99 KQEVLSHISNMSYIGGT-NQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDG 157 +EV+ + GGT T G++ + T+A G+R GV +V+V++TDG S D Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGARR--GVQKVMVIVTDGESHDN 117 Query: 158 --LALPSAELKSADVNVFAIGV----------EDADEGALKEIASEPLNMHMFNLENFTS 205 L + + ++ FAI + + +K IAS+P H FN+ + + Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177 Query: 206 LHDIVGNLVS 215 L IV L Sbjct: 178 LVTIVEALGE 187 Score = 124 bits (310), Expect = 2e-29 Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 18/194 (9%) Query: 639 DIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQT 698 DI+ +LDGS ++ + V F+ +L+ ++DIG +VG+VQ+ T V EF LNTY T Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59 Query: 699 KSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDS 758 +++ +++ +GG+ T + FTEA G+ R V ++++++T G+S D+ Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGA--RRGVQKVMVIVTDGESHDN 117 Query: 759 --YLQAANALTRAGILTFCVG----------ASQANKAELEQIA--FNPSLVYLMDDFSS 804 + + I F + +++ E++ IA + + D + Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177 Query: 805 LPALPQQLIQPLTT 818 L + + L + + Sbjct: 178 LVTIVEALGERIFA 191 Score = 112 bits (279), Expect = 7e-26 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 18/192 (9%) Query: 1639 DIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFST 1698 DIV +LDGS + ++ V F++ ++ + QVG+VQY EF+L +ST Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59 Query: 1699 KRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKS--V 1756 +++DA ++ +GG T +G++ R F G+R + V ++ ++T G+S Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDN 117 Query: 1757 EDAQDVSLALTQRGVKVFAVGVRN----------IDSEEVGKIAS--NSATAFRVGNVQE 1804 Q+V ++ FA+ + EE+ IAS F V + Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177 Query: 1805 LSELSEQVLETL 1816 L + E + E + Sbjct: 178 LVTIVEALGERI 189 Score = 112 bits (279), Expect = 8e-26 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%) Query: 1233 DVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSK 1292 D+V ++DGS S ++ V + L+ +D+G T+V ++Q+ EF LN +S+ Sbjct: 2 DIVIVLDGSNSIY-PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYSTT 60 Query: 1293 DEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDE- 1351 +EV +A R+R +GG Q ++ F G+R GV + +V+++ G+S D Sbjct: 61 EEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDNY 118 Query: 1352 -VVVPAVELKQFGVAPFTIA--RNADQEELVKISLSPE-----------YVFSVSTFREL 1397 + + + + F IA + + L E + F+VS L Sbjct: 119 RLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELAL 178 Query: 1398 PSLEQKLLTPITTL 1411 ++ + L I L Sbjct: 179 VTIVEALGERIFAL 192 Score = 111 bits (276), Expect = 2e-25 Identities = 46/168 (27%), Positives = 84/168 (49%), Gaps = 7/168 (4%) Query: 445 DIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPT 504 DIV ++DGS+++ + ++ F+ +++ ++IG QV + QY TV EFY NT+ T Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59 Query: 505 KREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDE 564 EV+ A +++ G+ T +D R FT + G R G+ K++V++T G+S D Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDN 117 Query: 565 --ISQPAQELKRSSIMAFAIG-NKGADQAELEEIAFDSSLVFIPAEFR 609 + + + + +I FAI + L F + I ++ Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPT 165 Score = 110 bits (274), Expect = 3e-25 Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 18/192 (9%) Query: 242 DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYST 301 DI+ ++DGSN+ + + FL +LL + IG QQ +VG+VQ+ F L+TYST Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59 Query: 302 KAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDE 361 +V+ A + GG L +D E FT A G+R GV +V+V+++ G S D Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDN 117 Query: 362 IRYGVVAL----KQASVFSFGLGAQA--------ASRAELQHIAT--DDNLVFTVPEFRS 407 R V + F+ + E++ IA+ + F V + + Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177 Query: 408 FGDLQEKLLPYI 419 + E L I Sbjct: 178 LVTIVEALGERI 189 Score = 108 bits (268), Expect = 2e-24 Identities = 49/190 (25%), Positives = 88/190 (45%), Gaps = 18/190 (9%) Query: 1436 DIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRS 1495 DIV ++D S + + + F++ ++R ++IGP + +VG+VQ+ V EFYL TY + Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59 Query: 1496 QAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQD- 1554 V+DA R+R RGG+ T ++ F ++ G+R GV + +V+V G+S D Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDN 117 Query: 1555 -DVSRFAQVIRSSGI--VSLGVGDRN--------IDRTELQTITNDP--RLVFTVREFRE 1601 + I ++ + E+++I + P + F V + Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177 Query: 1602 LPNIEERIMN 1611 L I E + Sbjct: 178 LVTIVEALGE 187 Score = 108 bits (268), Expect = 2e-24 Identities = 40/194 (20%), Positives = 84/194 (42%), Gaps = 17/194 (8%) Query: 1029 DVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNK 1088 D+V +LDGS + + + F+ ++ ++D+G + +V +VQY EFYLN+Y Sbjct: 2 DIVIVLDGSNSIY-PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYSTT 60 Query: 1089 QDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGD-- 1146 ++V++A ++ GG T ++ + G+R GV ++++++T S D Sbjct: 61 EEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDNY 118 Query: 1147 DVRNPSVVVKRGGAVPIGIGIGN----------ADITEMQTIS--FIPDFAVAIPTFRQL 1194 ++ + I I + E+++I+ + L Sbjct: 119 RLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELAL 178 Query: 1195 GTVQQVISERVTQL 1208 T+ + + ER+ L Sbjct: 179 VTIVEALGERIFAL 192 Score = 90.4 bits (222), Expect = 4e-19 Identities = 31/157 (19%), Positives = 67/157 (41%), Gaps = 6/157 (3%) Query: 837 DILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSK 896 DI+ + DGS + + + V FL ++ +++ P+ T++ + QY V E + + + Sbjct: 2 DIVIVLDGSNS-IYPWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYSTT 60 Query: 897 PEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSD-- 954 E+++ R++ + G +D A+ F ++ G+R GV + +V++ G S D Sbjct: 61 EEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDNY 118 Query: 955 RVDGPASNLKQSGVVPFIFQ-AKNADPAELEQIVLSP 990 R+ + + F + L Sbjct: 119 RLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVE 155 Score = 69.0 bits (167), Expect = 1e-12 Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 31/207 (14%) Query: 2618 IDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDN 2677 +D+ +LD + + + + ++ L+R +D+ P +V +VQ+ + Sbjct: 1 LDIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQ------TQVGIVQYGQT----- 47 Query: 2678 ASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRA-LGSAIEYTIENVFESAPNPRDL 2736 V EF L Y + E+++D R + Q GT+ I+ E F A R Sbjct: 48 -----VVHEFYLNTYSTTEEVMDAALR-IRQRGGTQTMTALGIDTAREEAFTEAHGARRG 101 Query: 2737 KIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVN---------IKEVYTFA 2787 V+++ + Q VI + + + + I + ++E+ + A Sbjct: 102 VQKVMVIVTDGESHDNYRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIA 161 Query: 2788 SEPNDVFFKLVDKSTELNE--EPLMRF 2812 S+P + F V L E L Sbjct: 162 SKPTEKHFFNVSDELALVTIVEALGER 188 Score = 57.7 bits (138), Expect = 2e-09 Identities = 28/193 (14%), Positives = 60/193 (30%), Gaps = 18/193 (9%) Query: 2402 ELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRFA 2461 ++ LD S + + + + S++ + I P +V +V Y V E Sbjct: 2 DIVIVLDGSNSIYP--WESVTAFLNSLLRNMDIG----PQQTQVGIVQYGQTVVHEFYLN 55 Query: 2462 DSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNG-FLMRKVAVFFSNTPT 2520 ++D ++ Q + F ++KV V ++ + Sbjct: 56 TYSTTEEVMDAALRIRQRG-GTQTMTALGIDTAREEAFTEAHGARRGVQKVMVIVTDGES 114 Query: 2521 RASPQLREAVLKLSDAGITPLFL------TRQEDRQLINALQINNTA----VGHALVLPA 2570 + +L+E + K D I + +R +I + A H + Sbjct: 115 HDNYRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSD 174 Query: 2571 GRDLTDFLENVLT 2583 L +E + Sbjct: 175 ELALVTIVEALGE 187 Score = 39.8 bits (92), Expect = 7e-04 Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 23/159 (14%) Query: 1837 LDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSG 1896 LD+++ DGS + + F ++++L + +V +V Sbjct: 1 LDIVIVLDGSNSIYPWESVTAF---LNSLLRNMDIG---------PQQTQVGIVQYG-QT 47 Query: 1897 PVEAFDFDEYQ--PEMLEKFRNMRSQHPYVLT------EDTLKVYLNKFRQSSPDSVKVV 1948 V F + Y E+++ +R Q T + + + + KV+ Sbjct: 48 VVHEFYLNTYSTTEEVMDAALRIR-QRGGTQTMTALGIDTAREEAFTEAHGARRGVQKVM 106 Query: 1949 IHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVN 1987 + TDG D L + E ++ + + + Sbjct: 107 VIVTDGESHDNYRLQEVIDKCEDENIQ-RFAIAILGSYS 144 >gi|2645090 [1..155] Integrin A (or I) domain Length = 155 Score = 135 bits (337), Expect = 1e-32 Identities = 39/158 (24%), Positives = 79/158 (49%), Gaps = 10/158 (6%) Query: 40 IIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTK 99 ++FL+DSS ++G+E+F ++EF+ +V + V +++F+ + L+ ++T Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 100 QEVLSHISNMSYIGG-TNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDG- 157 +++L+ I ++ Y G + K LE M+ ++ G R + +V+L DG + Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAME-AFSEKNGGR--ADATKALVLLADGQNSFIE 117 Query: 158 ----LALPSAELKSADVNVFAIGV-EDADEGALKEIAS 190 L L A V + IG+ + D L++IA+ Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155 Score = 127 bits (318), Expect = 2e-30 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 640 IIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTK 699 ++FLLD S +VG NF +++FV ++V + D+ N R+G+++F L+ ++T Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 700 SDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSY 759 D+L + ++ G AL F+E G R + L+LL GQ+ Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAM-EAFSEKNGG--RADATKALVLLADGQNSFIE 117 Query: 760 -----LQAANALTRAGILTFCVG-ASQANKAELEQIA 790 + L A + + +G + + ELE IA Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIA 154 Score = 110 bits (274), Expect = 3e-25 Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 9/158 (5%) Query: 1640 IVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTK 1699 ++FLLD S + ++F ++ FV IV D ++G+++++SD L D T Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 1700 RQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKS---- 1755 + +++ I+ + Y G LE F + G R + ++ G++ Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAM-EAFSEKNGGR--ADATKALVLLADGQNSFIE 117 Query: 1756 -VEDAQDVSLALTQRGVKVFAVGV-RNIDSEEVGKIAS 1791 +D + L V + +G+ R +D +E+ IA+ Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155 Score = 110 bits (274), Expect = 3e-25 Identities = 31/157 (19%), Positives = 74/157 (46%), Gaps = 9/157 (5%) Query: 446 IVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTK 505 ++FL+D S ++G NF+ +++F+ ++ ++ L ++ + ++ + H T Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 506 REVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLD-- 563 ++++ + ++ +G AL+ F+ G R K LVL+ G++ Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAM-EAFSEKNGGR--ADATKALVLLADGQNSFIE 117 Query: 564 ---EISQPAQELKRSSIMAFAIG-NKGADQAELEEIA 596 ++++ + L + + + IG + D ELE+IA Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIA 154 Score = 104 bits (258), Expect = 3e-23 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 11/159 (6%) Query: 243 IIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYSTK 302 ++FL+D S + G NF + +F+ +++ + Q R+G+++F + + L + T Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 303 AQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSD-- 360 +L + ++ + G I AL+ +E F+ G R + LVL++ G +S Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAME-AFSEKNGGR--ADATKALVLLADGQNSFIE 117 Query: 361 ---EIRYGVVALKQA--SVFSFGLGAQAASRAELQHIAT 394 ++ + L A + G+G + EL+ IAT Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIG-RELDLKELEDIAT 155 Score = 102 bits (254), Expect = 7e-23 Identities = 34/157 (21%), Positives = 66/157 (41%), Gaps = 10/157 (6%) Query: 1030 VVFLLDGSEGV-RSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNK 1088 ++FLLD S V F +KEFV+ +V + DV R+ ++++ L+ + Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 1089 QDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRS--GD 1146 +D++N + + G ALE G R + L++L ++ + Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERA-MEAFSEKNGGR--ADATKALVLLADGQNSFIE 117 Query: 1147 DVRNPSVVVKR---GGAVPIGIGIG-NADITEMQTIS 1179 ++ + +K IGIG D+ E++ I+ Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIA 154 Score = 102 bits (254), Expect = 7e-23 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 11/157 (7%) Query: 1234 VVFLIDGSQSAGPE-FQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSK 1292 ++FL+D S S G E F ++ ++ +V DV TR+ +I+F D + L+ H + Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 1293 DEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD-- 1350 ++ N + +R G Q + ALE F G R + LVL++ G++ Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERA-MEAFSEKNGGR--ADATKALVLLADGQNSFIE 117 Query: 1351 ---EVVVPAVELKQFGVAPFTIA--RNADQEELVKIS 1382 ++ L V + I R D +EL I+ Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIA 154 Score = 102 bits (253), Expect = 9e-23 Identities = 39/157 (24%), Positives = 74/157 (46%), Gaps = 11/157 (7%) Query: 1437 IVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQ 1496 ++FL+DSS V + F +++FV IV ++ R+G+++F +D L +++ Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 1497 APVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQD-- 1554 +L+ I +R G KALE A F + G R + LVL+ G++ Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALER-AMEAFSEKNGGR--ADATKALVLLADGQNSFIE 117 Query: 1555 ---DVSRFAQVIRSSGI--VSLGVGDRNIDRTELQTI 1586 D++ + + + + +G+G +D EL+ I Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGR-ELDLKELEDI 153 Score = 88.4 bits (217), Expect = 2e-18 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 838 ILFLFDGSANLVGQ-FPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSK 896 +LFL D S ++ + F +++F+ I+ +V + TRI + ++ D ++ + +H++ Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60 Query: 897 PEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSD-- 954 ++LN + ++ G + AL+ A F + G R + LVLL G++S Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAME-AFSEKNGGR--ADATKALVLLADGQNSFIE 117 Query: 955 ---RVDGPASNLKQSGVVPF-IFQAKNADPAELEQI 986 ++ L + V + I + D ELE I Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDI 153 Score = 62.3 bits (150), Expect = 1e-10 Identities = 29/170 (17%), Positives = 72/170 (42%), Gaps = 20/170 (11%) Query: 2622 FILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMP 2681 F+LDS+ + F++MK+++ +V D+ R+ +++ Sbjct: 3 FLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQL------TRIGIIRFDSD--------- 47 Query: 2682 PVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRA-LGSAIEYTIENVFESAPNPRDLKIVV 2740 ++ L+D+ + + L++ + + +G + + A+E +E E D + Sbjct: 48 -AEIIIQLSDHKTLKDLLNDIDS-IRYNEGIQTRIDKALERAMEAFSEKNGGRADATKAL 105 Query: 2741 LMLTGEVPE--QQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFAS 2788 ++L + ++ + F V+GIGR++++KE+ A+ Sbjct: 106 VLLADGQNSFIEGSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155 Score = 56.9 bits (136), Expect = 5e-09 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%) Query: 2403 LAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRFAD 2462 + F LD+S V + F +M++ V SIV + R+ ++ ++++ I+ +D Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLT----RIGIIRFDSDAEIIIQLSD 56 Query: 2463 SKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFL-MRKVAVFF----SN 2517 K LL+ I +++ Q ++ A+ A F G K V ++ Sbjct: 57 HKTLKDLLNDIDSIRYN-EGIQTRIDKALER-AMEAFSEKNGGRADATKALVLLADGQNS 114 Query: 2518 TPTRASPQLREAVLKLSDAGIT 2539 + L E + L DA + Sbjct: 115 FIEGSQD-LNEELKPLIDAKVF 135 Score = 36.2 bits (83), Expect = 0.008 Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 21/162 (12%) Query: 1839 VILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPV 1898 ++ D S V + F+ + + + + + + + + Sbjct: 1 MLFLLDSSGS----VGDENFDKMKEFVKSIVLNFD----VDNQLTRIGIIRFDSDAE--- 49 Query: 1899 EAFDFDEYQ--PEMLEKFRNMR-SQHPYVLTEDTLKVYLNKF---RQSSPDSVKVVIHFT 1952 +++ ++L ++R ++ + L+ + F D+ K ++ Sbjct: 50 IIIQLSDHKTLKDLLNDIDSIRYNEGIQTRIDKALERAMEAFSEKNGGRADATKALVLLA 109 Query: 1953 DGA---DGDLADLHRASENLRQEGVRALILVGLERVVNLERL 1991 DG DL+ + L V ++G+ R ++L+ L Sbjct: 110 DGQNSFIEGSQDLNEELKPLIDAKVF-RYVIGIGRELDLKEL 150 >gi|417325 [120..385] S-adenosyl-L-methionine-dependent methyltransferases Length = 266 Score = 29.6 bits (66), Expect = 0.70 Identities = 8/73 (10%), Positives = 14/73 (18%) Query: 2313 RGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGD 2372 + K N + L G + + G R Sbjct: 156 YNLTEFKKTKSNINKASLIGYSKFNSEGYVYDPEFTGPTLTASGANSRIKIKDGSNIRKM 215 Query: 2373 SIDQCALIQSIKD 2385 + D+ L Sbjct: 216 NSDETFLYIGFDS 228 >gi|155099 [19..420] S-adenosyl-L-methionine-dependent methyltransferases Length = 402 Score = 28.7 bits (63), Expect = 1.3 Identities = 24/251 (9%), Positives = 59/251 (22%), Gaps = 20/251 (7%) Query: 2593 IDPSCGFGSW-RPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDM 2651 ++P+C G + R V +++ L + E L + Sbjct: 24 LEPACADGPFLRAFREAHGTGYRFVGVEI-----DPHALDLPPWAEGVVADFLLWEPGEA 78 Query: 2652 SPDPKASQHFARVAVVQ-HAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQ 2710 + + V + + + T G F+ + + L+ Sbjct: 79 FDLILGNPPYGIVGEASKYPIHVLREVKGLYKKT---LSTWKGKYNLYGAFIEKSVRLLR 135 Query: 2711 GTRALGSAIEYTIENVFESAPNPRDL----KIVVLMLTGEVPEQQLEEAQRVILQAKCKG 2766 L + T + + + L + V L P +++ + Sbjct: 136 EGGTLVFVVPATWLVLDDFSLLRSFLAREGRTEVYYLGEVFPGRKVSAVVLRFRKGGKGL 195 Query: 2767 YFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAF 2826 + G ++ ++ E + Sbjct: 196 ALWDTRRDGETFTPLLWSEKPEWKGEIIRF---ETGWTREMEASGPPLGSLFHIPFA--- 249 Query: 2827 YLSPDIRKQCD 2837 SP+ +K Sbjct: 250 ARSPEFKKHPA 260 >gi|2635679 [5..214] NAD(P)-binding Rossmann-fold domains Length = 210 Score = 28.9 bits (63), Expect = 1.4 Identities = 15/130 (11%), Positives = 34/130 (25%), Gaps = 1/130 (0%) Query: 1749 VITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSEL 1808 +ITG Q ++L ++G +V A+ D Q+ L Sbjct: 1 IITGASKG-LGQAIALQALEKGHEVHALSRTKTDVSHKKLTQHQIDLINLEEAEQQFETL 59 Query: 1809 SEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNR 1868 + + + G+ K + N+ + + Sbjct: 60 LSSIDSDRYSGITLINNAGMVTPIKRAGEASLDELQRHYQLNLTAPVLLSQLFTKRFASY 119 Query: 1869 ISQMHRVSCS 1878 + V+ + Sbjct: 120 SGKKTVVNIT 129 >gi|886067 [7..235] beta-Roll Length = 229 Score = 28.5 bits (63), Expect = 1.7 Identities = 28/114 (24%), Positives = 37/114 (31%), Gaps = 7/114 (6%) Query: 2101 GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP 2160 G +G G +G D G G G +G G G+ + GD GN Sbjct: 1 GGQGSNSLFGSNGDDIMLDPTGDDWIDGRAGRDSISAGEGNDRVFGGVGNDHVFGDEGND 60 Query: 2161 ---GQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGN 2211 G + LG D + GGPG+ G GR G G+ Sbjct: 61 YLYGDLGRGNPRIPAPAILG----ADNDKLYGGPGDDSLFAGDGRDSLTGGAGH 110 >gi|2688351 [1..345] NAD(P)-binding Rossmann-fold domains Length = 345 Score = 28.2 bits (61), Expect = 2.1 Identities = 15/171 (8%), Positives = 36/171 (20%), Gaps = 6/171 (3%) Query: 1749 VITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSEL 1808 +TG V+ L ++G +V + D E+ + ++ Sbjct: 4 FLTGIAG-FIGFHVAKKLVEKGHEVLGI-DVLNDYYELKFKHERLEALGFCSKDVKTHKI 61 Query: 1809 SEQVLETLHDAMHETLC--PGVTDAAKACNLDVILGFDGSRDQNVFVAQ--KGFESKVDA 1864 + + + + + K + + + Sbjct: 62 IKSEKYNNLSFAYLDILNKDKLLELFKDHKFTHVCHLAAQAGIRDSLENPDSYVSINIVG 121 Query: 1865 ILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFR 1915 N + + S V + D P L Sbjct: 122 FFNVLDVCRVYKENIEHFVYASTSSVYGINENMPSSEDSITDHPLNLYAAS 172 >gi|126848 [26..185] Four-helical up-and-down bundle Length = 160 Score = 28.1 bits (62), Expect = 2.2 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 751 TAGQSEDSYLQAANALTRAGILTFCVGASQANKA---ELEQIAFNPSLVY---LMDDFSS 804 +S LQA N+L RAGI + A EL A L + Sbjct: 27 LLSESRVDLLQARNSLNRAGIRYMMDTNKIGSGATIDELLAKAEKEKLARAERNYTAYEK 86 Query: 805 LPALPQQLIQ 814 +P P+Q Q Sbjct: 87 IPQDPRQDPQ 96 >gi|1805705 [1..215] NAD(P)-binding Rossmann-fold domains Length = 215 Score = 28.1 bits (61), Expect = 2.4 Identities = 15/141 (10%), Positives = 32/141 (22%), Gaps = 7/141 (4%) Query: 1749 VITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATA----FRVGNVQE 1804 VITG + + + + A + V + Sbjct: 7 VITGANRG-IGLGLVQEFVKDKNIRHIIATARDVEKATDLKAISDPRVTALQLEVTCDKS 65 Query: 1805 LSELSEQVLETLHDAMHETL--CPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKV 1862 + +V E + L G F + N + + Sbjct: 66 MDTFVSKVEEIVGSDGLNLLVNNAGNAVDYPCKAKPNRALFAEQLNVNTTSVVILTQKLM 125 Query: 1863 DAILNRISQMHRVSCSGGRSP 1883 ++ S++ S R+ Sbjct: 126 PLLIKASSKVSGDQLSASRAA 146 >gi|1477763 [233..705] Lipoxigenase, C-terminal domain Length = 473 Score = 27.5 bits (61), Expect = 3.0 Identities = 10/72 (13%), Positives = 22/72 (29%), Gaps = 14/72 (19%) Query: 1660 RFVSEIVDTVYEDGDSIQ--------------VGLVQYNSDPTDEFFLKDFSTKRQIIDA 1705 F + ++ Y D + G + F T + +ID Sbjct: 292 NFSRDYINLYYSDDSRVAGDSELGRFFNQLSADGTGTDGGIGMFKGFPAKIETIQDLIDV 351 Query: 1706 INKVVYKGGRHA 1717 + ++V+ +H Sbjct: 352 VKRIVFIPVQHH 363 Score = 26.0 bits (57), Expect = 9.6 Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 16/72 (22%) Query: 641 IFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS 700 +++++ S +N + + N+ D ++ S P+ F Sbjct: 83 VYIVEFSYLYDLSNVEDLTE-----RNTTDRRE-------MRGSRAPICTF----VSANV 126 Query: 701 DILGHLRQLQLQ 712 + L+ + +Q Sbjct: 127 GGVRELKPVAIQ 138 >gi|2285879 [10..385] ATP-grasp Length = 376 Score = 27.6 bits (61), Expect = 3.1 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 32/152 (21%) Query: 980 PAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEG 1039 P+ L ++ + + ++GD LL S+ +GA + G D V L ++ Sbjct: 60 PSGLWDEIIEGLNWVQQDMGARLGD---PEKPLLVSLRSGAAVSMPGMMDTVLNLGLNDE 116 Query: 1040 VRSG----------FPLLKEFVQ---RVVESLD-------VGQDRVRVAVVQYSDRTRPE 1079 V +G + + F+ VV + + + + V +D + + Sbjct: 117 VVAGLAKKSGERFAYDSYRRFIDMFSDVVMGIPHEHFGEKLEEMKATKGVKNDTDLSADD 176 Query: 1080 F------YLNSYMN---KQDVVNAVRQLTLLG 1102 Y Y + + ++QL+L Sbjct: 177 LKELVVQYKEVYAKAKGEPFPTDPMKQLSLAV 208 >gi|2499489 [82..349] Phosphofructokinase Length = 268 Score = 27.5 bits (61), Expect = 3.3 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Query: 1501 DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFA 1560 D I R +GG + + F ++ + + + LV++ G S + A Sbjct: 55 DYIHPYRNQGGFDMICSGRDKIETPEQFKQAEETAGKLDL-NGLVVIGGDDSNTNACLLA 113 Query: 1561 Q--VIRSSGIVSLGVG---DRNIDRTELQT 1585 + ++ +G D ++ E+ T Sbjct: 114 ENFRSKNLKTRVIGCPKTIDGDLKCKEVPT 143 >gi|999515 [1..176] NAD(P)-binding Rossmann-fold domains Length = 176 Score = 27.4 bits (60), Expect = 3.3 Identities = 23/89 (25%), Positives = 42/89 (46%), Gaps = 9/89 (10%) Query: 407 SFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNK-RDIVFLVDGSSALGLANFNAIR 465 +F K+ ++ A+ VL ++ V ++ K R I+ LV A+ Sbjct: 30 AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG--------QAVD 81 Query: 466 DFIAKVIQRLEIGQDLIQVAVAQYADTVR 494 +FI K++ L+IG +I ++Y DT+R Sbjct: 82 NFIEKLVPLLDIGDIIIDGGNSEYRDTMR 110 >gi|2500974 [303..458] Anticodon-binding (C-terminal) domain of glutamyl-tRNA synthetase Length = 156 Score = 27.2 bits (60), Expect = 3.7 Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 6/89 (6%) Query: 831 QPESKRDILFLFDGSANLVGQFPVVRDFLY---KIIDELNVK---PEGTRIAVAQYSDDV 884 P +L + + + + D + +E K + ++ ++ Sbjct: 34 NPTQLDRLLDALKERSQTLKELALKIDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLEL 93 Query: 885 KVESRFDEHQSKPEILNLVKRMKIKTGKA 913 + DE + + +++ KIK G Sbjct: 94 NKANFNDESALENAMRQIIEEEKIKAGSF 122 >gi|2506153 [10..236] NAD(P)-binding Rossmann-fold domains Length = 227 Score = 27.4 bits (59), Expect = 4.1 Identities = 14/133 (10%), Positives = 36/133 (26%), Gaps = 10/133 (7%) Query: 1749 VITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSEL 1808 +ITGG ++ + V + + + A + Sbjct: 1 LITGGGRR-IGLALAWHFINQKQPVIVSYRTHYPAIDGLINAGAQCIQADFSTNDGVMAF 59 Query: 1809 SEQVLETLH--DAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAIL 1866 +++VL++ H A+ + + A DV+ + + A+ Sbjct: 60 ADEVLKSTHGLRAILHNASAWMAEKPGAPLADVL-------ACMMQIHVNTPYLLNHALE 112 Query: 1867 NRISQMHRVSCSG 1879 + + Sbjct: 113 RLLRGHGHAASDI 125 >gi|1168958 [24..474] Citrate synthase Length = 451 Score = 27.2 bits (60), Expect = 4.4 Identities = 19/84 (22%), Positives = 29/84 (33%), Gaps = 20/84 (23%) Query: 2691 DYGSK---EKLVDFLSRGMTQLQGTRALGSAIE---------YTIENVFESAP------- 2731 YGS + + GM Q G++++ TIE P Sbjct: 27 CYGSTFVGPITISSVLGGMRGNQSMFWQGTSLDPEHGIKFQGLTIEECQNRLPNTGIDGD 86 Query: 2732 NPRDLKIVVLMLTGEVP-EQQLEE 2754 N ++ L++TG VP QQ Sbjct: 87 NFLPESMLWLLMTGGVPTFQQAAS 110 >gi|68234 [34..414] Citrate synthase Length = 381 Score = 27.2 bits (60), Expect = 4.5 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Query: 2721 YTIENVFESAPNPRDLKIVVLMLTGEVP-EQQLEE 2754 Y IE + A L+ L+L GE+P Q E+ Sbjct: 39 YPIE---QLAEKSDYLETCYLLLNGELPTAAQKEQ 70 >gi|116909 [47..259] S-adenosyl-L-methionine-dependent methyltransferases Length = 213 Score = 26.8 bits (58), Expect = 4.8 Identities = 15/131 (11%), Positives = 37/131 (27%), Gaps = 7/131 (5%) Query: 1875 VSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYV--LTEDTLKV 1932 + G S ++ P + + + + ++ N V L + + Sbjct: 62 LGAYCGYSAVRMARLLQ--PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL 119 Query: 1933 YLNKFRQSSPDSVKVVI-HFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERL 1991 ++ D++ +V L LR+ V L+ + + L Sbjct: 120 IPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV--LLADNVIVPGTPDFL 177 Query: 1992 MHLEFGRGFMY 2002 ++ F Sbjct: 178 AYVRGSSSFEC 188 >gi|797337 [17..308] Periplasmic binding protein-like I Length = 292 Score = 26.9 bits (59), Expect = 5.3 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 13/89 (14%) Query: 1235 VFLIDGSQSAGPEFQYVRTLIERLVDYLDV-GFDTTRVAVIQFSDDPKAEF-LLNAHSSK 1292 V L + E VR L+ + VD L + ++ V + + + LL+ Sbjct: 34 VILATSDEDIALERDAVRVLLAKRVDGLIISPTSSSEVDHLISASERDCPVVLLDRRVPV 93 Query: 1293 DEV-----------QNAVQRLRPKGGRQI 1310 AV+ L +G R + Sbjct: 94 LRADTFAVDNFGAAYEAVKSLIGQGHRNV 122 >gi|2688670 [455..688] beta-Lactamase/D-ala carboxypeptidase Length = 234 Score = 26.8 bits (59), Expect = 5.3 Identities = 15/146 (10%), Positives = 43/146 (29%), Gaps = 19/146 (13%) Query: 2774 IGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPL---------MRFGRLLPSFVSSEN 2824 I ++ +++S+ + + T PL ++ R +S Sbjct: 75 ILDRLGFDSAISYSSKLLGITDPKEIEKTFPKVYPLALGVISVSPIQMARAFAILGNSG- 133 Query: 2825 AFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPV-TTTKPV 2883 + P + + G T ++ ++ + + + + + T + Sbjct: 134 -SEIEPYGIRYIEDRAGRIITN-------EEASILAKIKNKEHQTQIVSPQTAYIITDMM 185 Query: 2884 TTTTKPVTTTTKPVTIINQPSVKPAA 2909 +T + T + T + A Sbjct: 186 KSTIQYGTLANQRYTNLKNFKSDIAG 211 >gi|1894762 [59..322] Periplasmic binding protein-like I Length = 264 Score = 26.8 bits (59), Expect = 5.5 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 7/83 (8%) Query: 1235 VFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEF---LLNAHS- 1290 + + + E +Y++T + V + + + + P L A S Sbjct: 34 LIFGNSDEELKKELEYLQTFKQNHVAGIIAATNYPDLEEYSGMNYPVVFLDRTLEGAPSV 93 Query: 1291 ---SKDEVQNAVQRLRPKGGRQI 1310 V+ A Q + ++I Sbjct: 94 SSDGYTGVKLAAQAIIHGKSQRI 116 >gi|133162 [12..305] 5' to 3' exonuclease Length = 294 Score = 26.4 bits (58), Expect = 7.6 Identities = 9/99 (9%), Positives = 17/99 (17%), Gaps = 4/99 (4%) Query: 1442 DSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLD 1501 D + V F R + + + Y L Sbjct: 186 DKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLV 245 Query: 1502 AIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGV 1540 I + + + + G V Sbjct: 246 LIDFDYI---PDNIASNIVNYYNS-YKLPPRGKIYSYFV 280 >gi|436861 [24..196] Four-helical up-and-down bundle Length = 173 Score = 26.1 bits (57), Expect = 7.9 Identities = 11/58 (18%), Positives = 21/58 (35%), Gaps = 4/58 (6%) Query: 299 YSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAG 356 + T++ A + GG G ++ +E A S + EG ++ L Sbjct: 118 FLTESGNESAKHGVQIFGG----HGFIIEHGMEQIVRDARISTLYEGTTEIQSLDLLA 171 >gi|1169087 [44..365] Cysteine proteinases Length = 322 Score = 26.2 bits (57), Expect = 9.0 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 7/43 (16%) Query: 3119 TCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVC 3161 C+ + + P + + C + +CEK C Sbjct: 159 GCKPYP----FPPCEHHSKKTHFDPCPHDLYPT---PKCEKKC 194 >gi|2635757 [51..326] Periplasmic binding protein-like II Length = 276 Score = 26.1 bits (57), Expect = 9.2 Identities = 21/184 (11%), Positives = 54/184 (28%), Gaps = 36/184 (19%) Query: 772 LTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQ-LIQPLTTYVSGGVEEVPLA 830 + + S +K ++ +P +Y + L++Y + + Sbjct: 17 IEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYK---NDTDWS 73 Query: 831 Q--PESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVES 888 +S+ ++ G P + Y+ D+ + Sbjct: 74 SQLVQSQITPFT-YEN--KQYG-VPWQM---------------DAKSFF--YNKDIFQKL 112 Query: 889 RFDEHQSKPEILNLVKRMKIKTGKALNLG---------YALDYAQRYIFVKSAGSRIEDG 939 D ++ E++++ K++K ++ G Y QR + K+ Sbjct: 113 NLDPPKTWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAK 172 Query: 940 VLQF 943 +F Sbjct: 173 TGEF 176 >gi|1123081 [41..288] Ribonuclease H-like motif Length = 248 Score = 26.0 bits (57), Expect = 9.3 Identities = 3/26 (11%), Positives = 7/26 (26%), Gaps = 3/26 (11%) Query: 2561 AVGHA---LVLPAGRDLTDFLENVLT 2583 + + GR L + + Sbjct: 20 TMLNEFESARSICGRQLERRVREQME 45 >gi|1943833 [45..314] Metallo-dependent phosphatases Length = 270 Score = 26.0 bits (57), Expect = 9.4 Identities = 4/34 (11%), Positives = 13/34 (37%), Gaps = 2/34 (5%) Query: 202 NFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDI 235 + S ++ + + C+ P + L+ + Sbjct: 140 SMMSAAAVIDSKILCMPGGPGPTI--REKGLQKL 171 >gi|1815643 [227..431] Metzincin-like Length = 205 Score = 26.1 bits (57), Expect = 9.9 Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 1/53 (1%) Query: 84 NGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGS 136 G N Q + H+ + + E +M+ + G Sbjct: 121 KGVEQFATHWNGELLAQS-IGHLLGLEHDTTACSCEPSPECVMRQQPGRVGGG 172 >gi|1361319 [558..735] Aldehyde oxidoreductase, molybdemum cofactor-binding domain Length = 178 Score = 26.1 bits (57), Expect = 9.9 Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 2/85 (2%) Query: 2436 ESNCPTGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVA 2495 ES V + + A + D + A Q + A Sbjct: 49 ESTATHKKGVGISIGVYGSGLDGPDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTA 108 Query: 2496 RNTFKRVRNGFLMRKVAVFFSNTPT 2520 + + G K+ + NT T Sbjct: 109 HEALRPM--GVAPEKIKFTWPNTAT 131 Underlying Matrix: BLOSUM62 Number of sequences tested against query: 1187 Number of sequences better than 10.0: 30 Number of calls to ALIGN: 64 Length of query: 3176 Total length of test sequences: 256703 Effective length of test sequences: 200348.0 Effective search space size: 626882523.3 Initial X dropoff for ALIGN: 25.0 bits