Score E
Sequences producing significant alignments: (bits) Value
emb|AL040197.1|AL040197 DKFZp434G0213_r1 434 (synonym: htes... 1501 0.0
gb|BE298149.1|BE298149 601118520F1 NIH_MGC_17 Homo sapiens ... 1166 0.0
gb|AA156881.1|AA156881 zl18h06.r1 Soares_pregnant_uterus_Nb... 1057 0.0
gb|BE772879.1|BE772879 RC1-FT0131-210700-021-d06 FT0131 Hom... 965 0.0
gb|AW375356.1|AW375356 RC2-CT0163-230999-003-F03 CT0163 Hom... 922 0.0
gb|AI381957.1|AI381957 te72h07.x1 Soares_NFL_T_GBC_S1 Homo ... 904 0.0
gb|BE772769.1|BE772769 RC1-FT0131-280600-011-c07 FT0131 Hom... 868 0.0
gb|AA453374.1|AA453374 zx47e01.r1 Soares_testis_NHT Homo sa... 817 0.0
gb|AW834167.1|AW834167 MR2-TT0012-191199-012-e01 TT0012 Hom... 805 0.0
gb|AW834142.1|AW834142 MR2-TT0012-151199-012-e01 TT0012 Hom... 805 0.0
gb|AW856069.1|AW856069 RC1-CT0286-060200-015-a03 CT0286 Hom... 791 0.0
gb|BE839124.1|BE839124 RC6-FN0138-110800-012-D01 FN0138 Hom... 781 0.0
gb|BE838958.1|BE838958 RC6-FN0138-260700-011-C04 FN0138 Hom... 779 0.0
gb|AA973148.1|AA973148 on93c05.s1 Soares_NFL_T_GBC_S1 Homo ... 757 0.0
gb|BE294389.1|BE294389 601172666F1 NIH_MGC_17 Homo sapiens ... 728 0.0
gb|AA453276.1|AA453276 zx47e01.s1 Soares_testis_NHT Homo sa... 714 0.0
gb|AW834328.1|AW834328 MR2-TT0012-151299-017-e03 TT0012 Hom... 706 0.0
gb|AA969508.1|AA969508 op43h08.s1 Soares_NFL_T_GBC_S1 Homo ... 704 0.0
gb|BE299959.1|BE299959 600944517F1 NIH_MGC_17 Homo sapiens ... 686 0.0
gb|AA034424.1|AA034424 ze75b08.r1 Soares_fetal_heart_NbHH19... 684 0.0
gb|AA053888.1|AA053888 ze75b08.s1 Soares_fetal_heart_NbHH19... 678 0.0
gb|AA009711.1|AA009711 ze82a05.s1 Soares_fetal_heart_NbHH19... 678 0.0
gb|AW973673.1|AW973673 EST385773 MAGE resequences, MAGM Hom... 672 0.0
gb|AW572558.1|AW572558 xw56h06.x2 NCI_CGAP_Pan1 Homo sapien... 672 0.0
gb|AI827235.1|AI827235 wl09e10.x1 NCI_CGAP_Ut1 Homo sapiens... 672 0.0
emb|AL040198.1|AL040198 DKFZp434G0213_s1 434 (synonym: htes... 672 0.0
gb|AA861456.1|AA861456 ak21a09.s1 Soares_testis_NHT Homo sa... 672 0.0
gb|AA326292.1|AA326292 EST29434 Cerebellum II Homo sapiens ... 672 0.0
gb|AA156792.1|AA156792 zl18h06.s1 Soares_pregnant_uterus_Nb... 672 0.0
gb|BE205999.1|BE205999 bb54a11.x1 NIH_MGC_17 Homo sapiens c... 668 0.0
gb|AI221725.1|AI221725 qh05c05.x1 Soares_NFL_T_GBC_S1 Homo ... 664 0.0
gb|AI082258.1|AI082258 ox79h09.x1 Soares_NhHMPu_S1 Homo sap... 664 0.0
gb|AA812968.1|AA812968 ai77b05.s1 Soares_testis_NHT Homo sa... 664 0.0
gb|BE772810.1|BE772810 RC3-FT0131-180700-012-a11 FT0131 Hom... 662 0.0
gb|AA927720.1|AA927720 om72f10.s1 NCI_CGAP_GC4 Homo sapiens... 658 0.0
gb|AI623117.1|AI623117 tu49h02.x1 NCI_CGAP_Pr28 Homo sapien... 652 0.0
gb|AA557641.1|AA557641 nl11h07.s1 NCI_CGAP_Br2 Homo sapiens... 650 0.0
gb|AA770429.1|AA770429 ah73h09.s1 Soares_testis_NHT Homo sa... 648 0.0
gb|AI003851.1|AI003851 ot66c06.s1 Soares_testis_NHT Homo sa... 642 0.0
gb|AW135231.1|AW135231 UI-H-BI1-acb-g-11-0-UI.s1 NCI_CGAP_S... 640 e-180
gb|AW300922.1|AW300922 xk08e04.x1 NCI_CGAP_Co20 Homo sapien... 632 e-178
gb|AA931085.1|AA931085 om87c05.s1 NCI_CGAP_Kid3 Homo sapien... 626 e-176
gb|R74431.1|R74431 yl01e04.r1 Soares breast 2NbHBst Homo sa... 624 e-175
gb|AW834338.1|AW834338 MR2-TT0012-151299-017-g05 TT0012 Hom... 617 e-173
gb|AW834118.1|AW834118 MR2-TT0012-141199-011-e03 TT0012 Hom... 603 e-169
gb|AA916553.1|AA916553 ol52g01.s1 Soares_NFL_T_GBC_S1 Homo ... 601 e-168
gb|T57669.1|T57669 yc01a08.s1 Stratagene lung (#937210) Hom... 581 e-162
gb|BE300060.1|BE300060 600944517T1 NIH_MGC_17 Homo sapiens ... 553 e-154
gb|AW411532.1|AW411532 fh12h05.x1 NIH_MGC_17 Homo sapiens c... 537 e-149
gb|BE019204.1|BE019204 bb54a11.y1 NIH_MGC_17 Homo sapiens c... 444 e-121
>emb|AL040197.1|AL040197 DKFZp434G0213_r1 434 (synonym: htes3) Homo sapiens cDNA clone
DKFZp434G0213 5'
Length = 832
Score = 1501 bits (757), Expect = 0.0
Identities = 764/765 (99%), Gaps = 1/765 (0%)
Strand = Plus / Plus
Query: 19228 atggtccagcagtcgttcccagcagaacagcggagcctggactgacacccagtgggacca 19287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtccagcagtcgttcccagcagaacagcggagcctggactgacacccagtgggacca 60
Query: 19288 gtgttgccacaccagttgataaaatgcagaaacccttctgtactcgttggtaaatatcta 19347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgttgccacaccagttgataaaatgcagaaacccttctgtactcgttggtaaatatcta 120
Query: 19348 ctcccccaagtgactccaggtgccccccaccgcctggcacttcccccaggactcctacga 19407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcccccaagtgactccaggtgccccccaccgcctggcacttcccccaggactcctacga 180
Query: 19408 tctggttactgcctggccgatccaaggctgtggagtcccagagccagcagttcactggtg 19467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctggttactgcctggccgatccaaggctgtggagtcccagagccagcagttcactggtg 240
Query: 19468 ctcattccacactggttagatacttcagttgtcacccctgggaagattctcccacctcct 19527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcattccacactggttagatacttcagttgtcacccctgggaagattctcccacctcct 300
Query: 19528 ccctttgatggaaccaccctccccagaggctgcattgaggagactccacagactgaaaag 19587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccctttgatggaaccaccctccccagaggctgcattgaggagactccacagactgaaaag 360
Query: 19588 tgagtttgcagaaaccttggggaaaagggccctttcaaagaagtggataagagggaggag 19647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgagtttgcagaaaccttggggaaaagggccctttcaaagaagtggataagagggaggag 420
Query: 19648 atcattgagtgacccagaaagctcttttgaaaagacagactcctcaaggagagataaaga 19707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcattgagtgacccagaaagctcttttgaaaagacagactcctcaaggagagataaaga 480
Query: 19708 ggaaagcacctctttcattttttagtgtgagctaattccatcagactgctgtcctcctgg 19767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggaaagcacctctttcattttttagtgtgagctaattccatcagactgctgtcctcctgg 540
Query: 19768 acccatctgagatgtgcagtagcaaggagaggggggatcattttagagagtgggtcattg 19827
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acccatctgagatg-gcagtagcaaggagaggggggatcattttagagagtgggtcattg 599
Query: 19828 gcagggagtgctccggagggaggcagaggggagactgtggtagaaggaagacagaactca 19887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gcagggagtgctccggagggaggcagaggggagactgtggtagaaggaagacagaactca 659
Query: 19888 cacatgctcccaggattggggacagggacagaggaggtaacagaaggcaaaggccagttt 19947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cacatgctcccaggattggggacagggacagaggaggtaacagaaggcaaaggccagttt 719
Query: 19948 ccccgttatcatgaaggggcccactcaggacaggaacaaggacaa 19992
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ccccgttatcatgaaggggcccactcaggacaggaacaaggacaa 764
Score = 69.9 bits (35), Expect = 2e-08
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 20018 gctgctcctgggatacc-aggtcagtgatgtagtcttgcagtt 20059
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 790 gctgctcctgggatacccaggtcagtgatgtagtcttgcagtt 832
>gb|BE298149.1|BE298149 601118520F1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE:3028277 5'
Length = 645
Score = 1166 bits (588), Expect = 0.0
Identities = 637/644 (98%), Gaps = 7/644 (1%)
Strand = Plus / Plus
Query: 17620 tcctgggaagagtgcccagccctgtcctccccggtgtctcctctcctgcttaccccatcc 17679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctgggaagagtgcccagccctgtcctccccggtgtctcctctcctgcttaccccatcc 60
Query: 17680 cagccctccgaaccgctccccttcgcagagccaca-ggcatcatcctgccagcccggagg 17738
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 cagccctccgaaccgctccccttcgcagagccacatggcatcatcctgccagcccggagg 120
Query: 17739 aatgtgctgcccagtcgaggggcatcttccaccc-gga-gggccc-gccccctagagagg 17795
|||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct: 121 aatgtgctgcccagtcgaggggcatcttccaccctggatgggccctgccccctagagagg 180
Query: 17796 ccagcgacccctgtgcctgtc-gcccccagcagca-gggctgccag-gagcagccacatc 17852
||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct: 181 ccagcgacccctgtgcctgtctgcccccagcagcatgggctgccagtgagcagccacatc 240
Query: 17853 gctcccctcctgcagtcttcctccccaacaccccctggtcctacagggtcggctgcttac 17912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gctcccctcctgcagtcttcctccccaacaccccctggtcctacagggtcggctgcttac 300
Query: 17913 gtggctgttcccacccccaactcatcctccccagggccagctgggaggccagcgggagcc 17972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtggctgttcccacccccaactcatcctccccagggccagctgggaggccagcgggagcc 360
Query: 17973 atgctctaccactcctgggtctctgaaatcactgaaatcggggctttctgagctgcccct 18032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgctctaccactcctgggtctctgaaatcactgaaatcggggctttctgagctgcccct 420
Query: 18033 tcaccaccccgccccaaggaataaggaaggttcttttaccaggagcccaaaaaagggcac 18092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaccaccccgccccaaggaataaggaaggttcttttaccaggagcccaaaaaagggcac 480
Query: 18093 tgccttttctgctttgcttcgtggactggctcatatgtgaaggcacgttctccagccatc 18152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgccttttctgctttgcttcgtggactggctcatatgtgaaggcacgttctccagccatc 540
Query: 18153 agaggccccctcctcctccaacccatctctccttctcactgttatcccagcttatccacc 18212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaggccccctcctcctccaacccatctctccttctcactgttatcccagcttatccacc 600
Query: 18213 cagctctcctggagctgttctggtctcagaggcttggttccatt 18256
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagctctcctggagctgttctggtctcagaggcttggttccatt 644
>gb|AA156881.1|AA156881 zl18h06.r1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone
IMAGE:502331 5'
Length = 575
Score = 1057 bits (533), Expect = 0.0
Identities = 556/563 (98%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 19267 gactgacacccagtgggaccagtgttgccacaccagttgataaaatgcagaaacccttct 19326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gactgacacccagtgggaccagtgttgccacaccagttgataaaatgcagaaacccttct 74
Query: 19327 gtactcgttggtaaatatctactcccccaagtgactccaggtgccccccaccgcctggca 19386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gtactcgttggtaaatatctactcccccaagtgactccaggtgccccccaccgcctggca 134
Query: 19387 cttcccccaggactcctacgatctggttactgcctggccgatccaaggctgtggagtccc 19446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cttcccccaggactcctacgatctggttactgcctggccgatccaaggctgtggagtccc 194
Query: 19447 agagccagcagttcactggtgctcattccacactggttagatacttcagttgtcacccct 19506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agagccagcagttcactggtgctcattccacactggttagatacttcagttgtcacccct 254
Query: 19507 gggaagattctcccacctcctccctttgatggaaccaccctccccagaggctgcattgag 19566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gggaagattctcccacctcctccctttgatggaaccaccctccccagaggctgcattgag 314
Query: 19567 gagactccacagactgaaaagtgagtttgcagaaaccttggggaaaagggccctttcaaa 19626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gagactccacagactgaaaagtgagtttgcagaaaccttggggaaaagggccctttcaaa 374
Query: 19627 gaagtggataagagggaggagatcattgagtgacccagaaagctcttttgaaaagacaga 19686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaagtggataagagggaggagatcattgagtgacccagaaagctcttttgaaaagacaga 434
Query: 19687 ctcctcaaggagagataaagaggaaagcacctctttcattttttagtgtgagctaattcc 19746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 435 ctcctcaaggagagataaagaggaaagcacctctttcattttttagtgtgagctaatttc 494
Query: 19747 atcagactgctgtcctcctggacccatctgagatgtgcagtagcaaggagaggggggatc 19806
|||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 495 atcagactgctgtc--tctggaaccatctgagatgtgcagtagcaaggagaagggggatc 552
Query: 19807 attttagagagtgggtcattggc 19829
|||||||||| ||||||||||||
Sbjct: 553 attttagagantgggtcattggc 575
alignment der restricted region
RNA DT.146575 DOTS assembly: No SwissProt Similarities assembly consensus sequence:
entspricht ungefaehr 19-20k-->ungefaehr 600 vor dem polyA+>
eine 250 bp luecke bleibt immer in den ESTs : es scheint zwei termini zu geben :
----------> ??????????????????????????????????????????????
1 ATGGTCCAGCAGTCGTTCCCAGCAGAACAGCGGAGCCTGCGACTGACACCCAGTGGGACC
61 AGTGTTGCCACACCAGTTGATAAAATGCAGAAACCCTTCTGTACTCGTTGGTAAATATCT
121 ACTCCCCCAAGTGACTCCAGGTGCCCCCCACCGCCTGGCACTTCCCCCAGGACTCCTACG
181 ATCTGGTTACTGCCTGGCCGATCCAAGGCTGTGGAGTCCCAGAGCCAGCAGTTCACTGGT
241 GCTCATTCCACACTGGTTAGATACTTCAGTTGTCACCCCTGGGAAGATTCTCCCACCTCC
301 TCCCTTTGATGGAACCACCCTCCCCAGAGGCTGCATTGAGGAGACTCCACAGACTGAAAA
361 GTGAGTTTGCAGAAACCTTGGGGAAAAGGGCCCTTTCAAAGAAGTGGATAAGAGGGAGGA
421 GATCATTGAGTGACCCAGAAAGCTCTTTTGAAAAGACAGACTCCTCAAGGAGAGATAAAG
481 AGGAAAGCACCTCTTTCATTTTTTAGTGTGAGCTAATTCCATCAGACTGCTGTCCTTCTG
541 GACCCATCTGAGATGTGCAGTAGCAAGGAGAGGGGGGATCATTTTAGAGAGTGGGTCATT
601 GGCAGGGAGTGCTCCGGAGGGAGGCAGAGGGGAGACTGTGGTAGAAGGAAGACAGAACTC
661 ACACATGCTCCCAGGATTGGGGACAGGGACAGAGGAGGTAACAGAAGGCAAAGGCCAGTT
721 TCCCCGTTATCATGAAGGGGCCCACTCAGGACAGGAACAAGGACAACTCCTCCTCCTCCT
781 CCTCCTCTCCTGCTGCTCCTGGGATACCAGGTCAGTGATGTAGTCTTGCAGTTTGGCAAC
841 TTCCTAGCCTGAGAATCCCTAGTGGGGCTGTGGGAAACACATTTCCACGTTGCAAGCATG
901 CAACTCCAAAGAATCTGTGATGCCACTGAAATGAGATGGGAATGATCCAGCTCTTTCAGC
961 ATCTTGGTTGAACTTGCTTTCATTGTCCCTGGGATATTGTGGAAGGAAAGGTGACTGTGT
1021 GATCTGATTCTGTGGTCAAGGACTTGCATCTTGTGTTTCTATCCCCAAGCCTTCCTGGTG
1081 TCTCCAACTCCTACCCCATTGCATGGGTTGTTGCGGACATCCAATAAAGATTTTTTTAGT
1141 GCTTCTGGAAAAAAAAAAAAAAAAAA
>das hsUnigencluster
CTCACTTCCAGCCTCATTTCTTGCCAGTCCCAGACTTGCTCCCTGAGCTTCTGCCACCTG 61
CCCTTCCTTCATTTCCTCGACATTCCAGCCTTGTTCCCACCTCCAGCACTTTGCATATGC 121
TGTTCCCTTTGCCAAGAATGCTCTTCCCCTACCCTGTGCATGGCTGAGTTCTGCAGACCC 181
TCAGGCCTTGGCTTCAACGTTGCCTCGTCCAAGAGGCCTTCCTCGACTACTTTACTTGTG 241
GAGTTCCTCTATCACAAGGCCTCTGTTCTTTCCCTTCATGGAGAATTTGCCACTGCATAT 301
CCATTTGTGTAATTTACTTGTTGGTTGACTGTGCCTCCCACTCGAGTGTAAGCTCATGAG 361
GCCAGGTGCCATGCCTGGTTCAGTCTCCACTCTGTACCCAGCATTGAGCACAGGGCCTGG 421
TCCATAGTTGGCGTTCAATAAATACTTGTTGAAGAAGTGAAAAAAAAAAAAAAAA