BLAST Search Results

BLASTP 2.1.1 [Aug-8-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 
         (98 letters)

Database: nr
           593,541 sequences; 187,673,620 total letters

Searching..................................................

E-value threshold for inclusion in PSI-Blast iteration 3: 0.002 
E-value threshold for inclusion in PSI-Blast iteration 4: 




 Results of PSI-Blast iteration 2

Distribution of 26 Blast Hits on the Query Sequence


Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 
Sequences with E-value BETTER than threshold 

                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 ref|NP_065138.1|  tumor endothelial marker 7 precursor [Homo sapi...   167  4e-41

 ref|XP_008292.1|  tumor endothelial marker 7 precursor [Homo sapi...   165  1e-40

 pir||T19786  hypothetical protein C36E8.3 - Caenorhabditis elegan...   154  2e-37

 gb|AAF46578.1|  (AE003450) CG2221 gene product [Drosophila melano...   154  3e-37

 pir||S31213  nidogen precursor - sea squirt (Halocynthia roretzi)...   125  1e-28

 pir||T30243  alpha tectorin - chicken >gi|4049439|emb|CAA09979.1|...   121  2e-27

 ref|NP_032721.1|  nidogen 2 [Mus musculus] >gi|8928260|sp|O88322|...   120  4e-27

 sp|Q14112|NID2_HUMAN  NIDOGEN-2 PRECURSOR (NID-2) (OSTEONIDOGEN) ...   120  5e-27

 ref|XP_007323.1|  nidogen 2 [Homo sapiens]                             117  5e-26

 gb|AAF58809.1|  (AE003830) CG12908 gene product [Drosophila melan...   115  2e-25

 ref|NP_033373.1|  tectorin alpha; [a]-tectorin [Mus musculus] >gi...    99  2e-20

 ref|NP_005413.1|  tectorin alpha precursor; Tectorin, alpha [Homo...    98  2e-20

 ref|XP_006310.1|  tectorin alpha precursor [Homo sapiens]               95  2e-19

 pir||MMHUND  nidogen precursor - human                                  65  3e-10

 ref|NP_002499.1|  nidogen (enactin); Nidogen; nidogen (entactin) ...    64  3e-10

 emb|CAA57709.1|  (X82245) nidogen [Homo sapiens]                        64  3e-10

 ref|XP_002042.1|  nidogen (enactin) [Homo sapiens]                      64  5e-10

 ref|NP_035047.1|  nidogen [Mus musculus] >gi|128200|sp|P10493|NID...    62  2e-09

 emb|CAA32642.1|  (X14480) prenidogen (AA -28 to 1217) [Mus musculus]    61  3e-09

 gb|AAA77652.1|  (L17324) entactin [Mus musculus]                        54  7e-07

 sp|P08460|NIDO_RAT  NIDOGEN (ENTACTIN) >gi|92554|pir||S14828 nido...    43  7e-04

 sp|P41950|YLK2_CAEEL  HYPOTHETICAL 122.7 KD PROTEIN D1044.2 IN CH...    42  0.001


Sequences with E-value WORSE than threshold 

 gb|AAF23818.1|AF218265_1  (AF218265) mucin Muc4 [Mus musculus]          40  0.008

 gb|AAA41120.1|  (M15797) entactin [Rattus norvegicus]                   39  0.013

 gb|AAF57124.1|  (AE003777) CG15560 gene product [Drosophila melan...    38  0.029


Alignments
>ref|NP_065138.1| tumor endothelial marker 7 precursor [Homo sapiens]
 gb|AAG00869.1|AF279144_1 (AF279144) tumor endothelial marker 7 precursor [Homo sapiens]
          Length = 502

 Score =  167 bits (420), Expect = 4e-41
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 60
           LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD
Sbjct: 137 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 196

Query: 61  NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 98
           NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA
Sbjct: 197 NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 234



>ref|XP_008292.1| tumor endothelial marker 7 precursor [Homo sapiens]
          Length = 296

 Score =  165 bits (416), Expect = 1e-40
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 60
           LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD
Sbjct: 164 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 223

Query: 61  NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 98
           NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA
Sbjct: 224 NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 261



>pir||T19786 hypothetical protein C36E8.3 - Caenorhabditis elegans
 emb|CAA84646.1| (Z35597) Weak similarity with sea squirt nidogen precursor protein
           (blastp score 71)~cDNA EST EMBL:T02069 comes from this
           gene~cDNA EST yk114g11.5 comes from this gene~cDNA EST
           yk114g11.3 comes from this gene~cDNA EST yk85g6.3 comes
           from this gene~cDNA>
          Length = 476

 Score =  154 bits (388), Expect = 2e-37
 Identities = 56/97 (57%), Positives = 72/97 (73%), Gaps = 1/97 (1%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 60
           L F FPFYGH +  +TIATGGFI++GD  H  L ATQY+APLMANF+  Y +NS +VY D
Sbjct: 156 LQFKFPFYGHKMSNLTIATGGFIYIGDHSHNWLAATQYIAPLMANFHT-YLNNSNIVYAD 214

Query: 61  NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVF 97
           +G +FVV+W +V L+  +D+ SFTFQ  LH +G IVF
Sbjct: 215 DGELFVVEWRNVQLKEDKDEHSFTFQTILHKNGDIVF 251



>gb|AAF46578.1| (AE003450) CG2221 gene product [Drosophila melanogaster]
          Length = 625

 Score =  154 bits (387), Expect = 3e-37
 Identities = 54/98 (55%), Positives = 67/98 (68%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 60
           L FDFPFYGH +R IT+ATGGF++ G+ +H  L ATQY+APLMANF+   S++S V   D
Sbjct: 258 LKFDFPFYGHFVRNITVATGGFLYTGEYVHSWLAATQYIAPLMANFDTSMSNDSFVRLHD 317

Query: 61  NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 98
           NGT F   W++V LQ   D G FTF   L+  G IVFA
Sbjct: 318 NGTAFTAVWENVTLQDKPDFGKFTFSVTLYQSGDIVFA 355



>pir||S31213 nidogen precursor - sea squirt (Halocynthia roretzi)
 dbj|BAA03127.1| (D14038) entactin/nidogen [Halocynthia roretzi]
          Length = 1161

 Score =  125 bits (313), Expect = 1e-28
 Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 25/122 (20%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYS--------- 51
           LS    FY      +T+ T GFI + +V          +AP M++ +   S         
Sbjct: 47  LSMPIVFYDQKYDSVTVHTDGFITLENVGAD-TDGEVLLAPFMSDLDTELSGDIFFREHK 105

Query: 52  DNSTVVY---------------FDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIV 96
           DN+T+                 F+ G+VFVV WD V     ED  +FTFQ  +  DG   
Sbjct: 106 DNATIARANTDVREAFIETAGDFNAGSVFVVTWDKVQSASREDGVTFTFQCIVATDGAAT 165

Query: 97  FA 98
           FA
Sbjct: 166 FA 167



>pir||T30243 alpha tectorin - chicken
 emb|CAA09979.1| (AJ012287) alpha tectorin [Gallus gallus]
          Length = 2120

 Score =  121 bits (303), Expect = 2e-27
 Identities = 30/129 (23%), Positives = 42/129 (32%), Gaps = 31/129 (24%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRML-------TATQYVAPLMANF------- 46
           LS  F F+  P R + +   G I    ++ +             +VAP   +        
Sbjct: 51  LSVPFIFFRSPYRTVYVNNNGVISFNSLVSQFTPEAFPLADGRAFVAPFCGDVANGIRGE 110

Query: 47  -------NPGYSDNST---------VVYFDNGTVFVVQWDHVYLQGWEDKGS-FTFQAAL 89
                  NP     S+         +  F    VF+V W+ V   G        TFQA L
Sbjct: 111 IYYRESTNPELLGESSKDIRKYFKDMASFSASWVFIVTWEEVQFYGGSSTTPVNTFQAVL 170

Query: 90  HHDGRIVFA 98
             DG   FA
Sbjct: 171 ITDGVSSFA 179



>ref|NP_032721.1| nidogen 2 [Mus musculus]
 sp|O88322|NID2_MOUSE NIDOGEN-2 PRECURSOR (NID-2) (ENTACTIN-2)
 dbj|BAA32609.1| (AB017202) entactin-2 [Mus musculus]
          Length = 1403

 Score =  120 bits (300), Expect = 4e-27
 Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 38/136 (27%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIH-------RMLTATQYVAPLMANFNPGYSDN 53
           L+    FY      + + T G I   D             T    +AP +A+ +  +S  
Sbjct: 61  LAIPLRFYDAQFSSLYVGTNGIISTQDFPRETQYVDDDFPTDFPAIAPFLADIDTSHSRG 120

Query: 54  STVVY-------------------------FDNGTVFVVQWDHVYLQGWEDKGS------ 82
             +                           F     F+  W+HV       +G+      
Sbjct: 121 RILYREDTSGAVLSLAARYVRTGFPLSGSSFTPTHAFLATWEHVGAYEEVSRGAAPSGEL 180

Query: 83  FTFQAALHHDGRIVFA 98
            TFQA L  D    +A
Sbjct: 181 NTFQAVLASDESDTYA 196



>sp|Q14112|NID2_HUMAN NIDOGEN-2 PRECURSOR (NID-2) (OSTEONIDOGEN)
 emb|CAA11418.1| (AJ223500) nidogen-2 [Homo sapiens]
          Length = 1375

 Score =  120 bits (299), Expect = 5e-27
 Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 37/135 (27%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGD-------VIHRMLTATQYVAPLMANFNPG---- 49
           L+    FY      + + T G I   D       V +   T    +AP +A+ +      
Sbjct: 61  LANPLHFYEARFSNLYVGTNGIISTQDFPRETQYVDYDFPTDFPAIAPFLADIDTSHGRG 120

Query: 50  ---YSDNST-----------------VVYFDNGTVFVVQWDHVYLQGW------EDKGSF 83
              Y ++++                    F     F+  W+ V                 
Sbjct: 121 RVLYREDTSPAVLGLAARYVRAGFPRSARFTPTHAFLATWEQVGAYEEVKRGALPSGELN 180

Query: 84  TFQAALHHDGRIVFA 98
           TFQA L  DG   +A
Sbjct: 181 TFQAVLASDGSDSYA 195



>ref|XP_007323.1| nidogen 2 [Homo sapiens]
          Length = 531

 Score =  117 bits (291), Expect = 5e-26
 Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 37/135 (27%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGD-------VIHRMLTATQYVAPLMANFNPG---- 49
           L+    FY      + + T G I   D       V +   T    +AP +A+ +      
Sbjct: 61  LANPLHFYEARFSNLYVGTNGIISTQDFPRETQYVDYDFPTDFPAIAPFLADIDTSHGRG 120

Query: 50  ---YSDNST-----------------VVYFDNGTVFVVQWDHVYLQGW------EDKGSF 83
              Y ++++                    F     F+  W+ V                 
Sbjct: 121 RVLYREDTSPAVLGLAARYVRAGFPRSARFTPTHAFLATWEQVGAYEEVKRGALPSGELN 180

Query: 84  TFQAALHHDGRIVFA 98
           TFQA L  DG   +A
Sbjct: 181 TFQAVLASDGSDSYA 195



>gb|AAF58809.1| (AE003830) CG12908 gene product [Drosophila melanogaster]
          Length = 1352

 Score =  115 bits (286), Expect = 2e-25
 Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 33/129 (25%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTAT-----QYVAPLMANFNPGYSDNST 55
           L     FYG    Q+ I T G +         L          +A   +N +  +SD  T
Sbjct: 62  LEQPIHFYGEQYEQLYINTNGILTFNSEFPEYLNQPFPLEYASIAAFYSNVDTSFSDEGT 121

Query: 56  -------------------VVY-------FDNGTVFVVQWDHV-YLQGWEDKGSFTFQAA 88
                              V Y       F+   V V  W +V Y     D+ + TFQ A
Sbjct: 122 SISLFESKEQSILDRASSLVRYAFSSQSEFEARQVIVATWRNVGYFDSKTDRLN-TFQVA 180

Query: 89  LHHDGRIVF 97
           L  + +  F
Sbjct: 181 LIANEQSTF 189



>ref|NP_033373.1| tectorin alpha; [a]-tectorin [Mus musculus]
 pir||T30197 alpha tectorin - mouse
 emb|CAA68138.1| (X99805) alpha tectorin [Mus musculus]
          Length = 2155

 Score = 98.8 bits (244), Expect = 2e-20
 Identities = 25/128 (19%), Positives = 41/128 (31%), Gaps = 31/128 (24%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRM-------LTATQYVAPLMANFNPGYSDN 53
           L+    F+G P R + +   G +    ++ +             ++AP  A+ + G    
Sbjct: 51  LAIPVFFFGVPYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFIAPFWADVHNGIRGE 110

Query: 54  ---------STVVY--------------FDNGTVFVVQWDHVYLQGWEDKGS-FTFQAAL 89
                    + +                F    VF+V W+ V   G        TFQA L
Sbjct: 111 IYYRETMDPAILRRATKDIRKYFKDMTTFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVL 170

Query: 90  HHDGRIVF 97
             DG   F
Sbjct: 171 VSDGSYTF 178



>ref|NP_005413.1| tectorin alpha precursor; Tectorin, alpha [Homo sapiens]
 gb|AAC26019.1| (AF055136) alpha-tectorin [Homo sapiens]
          Length = 2155

 Score = 98.4 bits (243), Expect = 2e-20
 Identities = 26/128 (20%), Positives = 40/128 (30%), Gaps = 31/128 (24%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRM-------LTATQYVAPLMANFNPGYSDN 53
           L+    F+G P R + +   G +    ++ +             +VAP  A+ + G    
Sbjct: 51  LAIPVFFFGVPYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFVAPFWADVHNGIRGE 110

Query: 54  -----------------------STVVYFDNGTVFVVQWDHVYLQGWEDKGS-FTFQAAL 89
                                    +  F    VF+V W+ V   G        TFQA L
Sbjct: 111 IYYRETMEPAILKRATKDIRKYFKDMATFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVL 170

Query: 90  HHDGRIVF 97
             DG   F
Sbjct: 171 VSDGSYTF 178



>ref|XP_006310.1| tectorin alpha precursor [Homo sapiens]
          Length = 1094

 Score = 95.3 bits (235), Expect = 2e-19
 Identities = 26/128 (20%), Positives = 40/128 (30%), Gaps = 31/128 (24%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRM-------LTATQYVAPLMANFNPGYSDN 53
           L+    F+G P R + +   G +    ++ +             +VAP  A+ + G    
Sbjct: 51  LAIPVFFFGVPYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFVAPFWADVHNGIRGE 110

Query: 54  -----------------------STVVYFDNGTVFVVQWDHVYLQGWEDKGS-FTFQAAL 89
                                    +  F    VF+V W+ V   G        TFQA L
Sbjct: 111 IYYRETMEPAILKRATKDIRKYFKDMATFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVL 170

Query: 90  HHDGRIVF 97
             DG   F
Sbjct: 171 VSDGSYTF 178



>pir||MMHUND nidogen precursor - human
          Length = 1247

 Score = 64.9 bits (157), Expect = 3e-10
 Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)

Query: 1   LSFDFPFYG-HPLRQITIATGGFIFM------GDVIHRMLTATQYVAPLMANFNPG---- 49
           LS    FY    +  + + T G I                     VAP +A+ +      
Sbjct: 59  LSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLG 118

Query: 50  ---YSDNST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FT 84
              Y ++ +                 + F   +  VV W+ V       +         T
Sbjct: 119 KVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNT 178

Query: 85  FQAALHHDGRIVFA 98
           FQA L       +A
Sbjct: 179 FQAVLASSDSSSYA 192



>ref|NP_002499.1| nidogen (enactin); Nidogen; nidogen (entactin) [Homo sapiens]
 sp|P14543|NIDO_HUMAN NIDOGEN PRECURSOR (ENTACTIN)
 gb|AAA59932.1| (M30269) nidogen [Homo sapiens]
          Length = 1247

 Score = 64.5 bits (156), Expect = 3e-10
 Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)

Query: 1   LSFDFPFYG-HPLRQITIATGGFIFM------GDVIHRMLTATQYVAPLMANFNPG---- 49
           LS    FY    +  + + T G I                     VAP +A+ +      
Sbjct: 59  LSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLG 118

Query: 50  ---YSDNST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FT 84
              Y ++ +                 + F   +  VV W+ V       +         T
Sbjct: 119 KVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNT 178

Query: 85  FQAALHHDGRIVFA 98
           FQA L       +A
Sbjct: 179 FQAVLASSDSSSYA 192



>emb|CAA57709.1| (X82245) nidogen [Homo sapiens]
          Length = 1246

 Score = 64.5 bits (156), Expect = 3e-10
 Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)

Query: 1   LSFDFPFYG-HPLRQITIATGGFIFM------GDVIHRMLTATQYVAPLMANFNPG---- 49
           LS    FY    +  + + T G I                     VAP +A+ +      
Sbjct: 58  LSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLG 117

Query: 50  ---YSDNST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FT 84
              Y ++ +                 + F   +  VV W+ V       +         T
Sbjct: 118 KVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNT 177

Query: 85  FQAALHHDGRIVFA 98
           FQA L       +A
Sbjct: 178 FQAVLASSDSSSYA 191



>ref|XP_002042.1| nidogen (enactin) [Homo sapiens]
          Length = 1110

 Score = 64.1 bits (155), Expect = 5e-10
 Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)

Query: 1   LSFDFPFYG-HPLRQITIATGGFIFM------GDVIHRMLTATQYVAPLMANFNPG---- 49
           LS    FY    +  + + T G I                     VAP +A+ +      
Sbjct: 89  LSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLG 148

Query: 50  ---YSDNST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FT 84
              Y ++ +                 + F   +  VV W+ V       +         T
Sbjct: 149 KVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNT 208

Query: 85  FQAALHHDGRIVFA 98
           FQA L       +A
Sbjct: 209 FQAVLASSDSSSYA 222



>ref|NP_035047.1| nidogen [Mus musculus]
 sp|P10493|NIDO_MOUSE NIDOGEN PRECURSOR (ENTACTIN)
 pir||MMMSND nidogen precursor - mouse
 emb|CAA32408.1| (X14194) enactin precursor (AA -28 to 1217) [Mus musculus]
 prf||1504282A entactin [Mus musculus]
          Length = 1245

 Score = 61.8 bits (149), Expect = 2e-09
 Identities = 25/128 (19%), Positives = 39/128 (29%), Gaps = 36/128 (28%)

Query: 7   FYGHP-LRQITIATGGFIFMGD------VIHRMLTATQYVAPLMANFNPG-------YSD 52
           FY    +  + + T G I M +             +   VAP +A+ +         Y +
Sbjct: 65  FYDRTDITSVYVTTNGIIAMSEPPATEYHPGTFPPSFGSVAPFLADLDTTDGLGNVYYRE 124

Query: 53  NST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FTFQAALH 90
           + +                 V F   +V VV W+ V   G             TFQA L 
Sbjct: 125 DLSPFIIQMAAEYVQRGFPEVSFQPTSVVVVTWESVAPYGGPSSSPAEEGKRNTFQAVLA 184

Query: 91  HDGRIVFA 98
                 +A
Sbjct: 185 SSNSSSYA 192



>emb|CAA32642.1| (X14480) prenidogen (AA -28 to 1217) [Mus musculus]
          Length = 1245

 Score = 61.4 bits (148), Expect = 3e-09
 Identities = 25/128 (19%), Positives = 39/128 (29%), Gaps = 36/128 (28%)

Query: 7   FYGHP-LRQITIATGGFIFMGD------VIHRMLTATQYVAPLMANFNPG-------YSD 52
           FY    +  + + T G I M +             +   VAP +A+ +         Y +
Sbjct: 65  FYDRTDITSVYVTTNGIIAMSEPPATEYHPGTFPPSFGSVAPFLADLDTTDGLGNVYYRE 124

Query: 53  NST----------------VVYFDNGTVFVVQWDHVYLQGWED------KGSFTFQAALH 90
           + +                 V F   +V VV W+ V   G             TFQA L 
Sbjct: 125 DLSPFIIQMAAEYVQRGFPEVSFQPTSVVVVTWESVAPYGGPSSSLAEEGKRNTFQAVLA 184

Query: 91  HDGRIVFA 98
                 +A
Sbjct: 185 SSNSSSYA 192



>gb|AAA77652.1| (L17324) entactin [Mus musculus]
          Length = 250

 Score = 53.6 bits (128), Expect = 7e-07
 Identities = 25/128 (19%), Positives = 39/128 (29%), Gaps = 36/128 (28%)

Query: 7   FYGHP-LRQITIATGGFIFMGD------VIHRMLTATQYVAPLMANFNPG-------YSD 52
           FY    +  + + T G I M +             +   VAP +A+ +         Y +
Sbjct: 65  FYDRTDITSVYVTTNGIIAMSEPPATEYHPGTFPPSFGSVAPFLADLDTTDGLGNVYYRE 124

Query: 53  NST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FTFQAALH 90
           + +                 V F   +V VV W+ V   G             TFQA L 
Sbjct: 125 DLSPFIIQMAAEYVQRGFPEVSFQPTSVVVVTWESVAPYGGPSSSPAEEGKRNTFQAVLA 184

Query: 91  HDGRIVFA 98
                 +A
Sbjct: 185 SSNSSSYA 192



>sp|P08460|NIDO_RAT NIDOGEN (ENTACTIN)
 pir||S14828 nidogen - rat (fragment)
          Length = 324

 Score = 43.4 bits (102), Expect = 7e-04
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 29/100 (29%)

Query: 28  VIHRMLTATQYVAPLMANFNPG-------YSDNST----------------VVYFDNGTV 64
                  +   VAP +A+ +         Y ++ +                 V F   +V
Sbjct: 3   HPGTFPPSFGSVAPFLADLDTTDGLGNVYYREDLSPFIIQMAAEYVQRGFPEVSFQPTSV 62

Query: 65  FVVQWDHVYLQGWEDKGS------FTFQAALHHDGRIVFA 98
            VV W+ +   G             TFQA L       +A
Sbjct: 63  VVVTWESMAPYGGPSGSLVEEGKRNTFQAVLASSNSSSYA 102



>sp|P41950|YLK2_CAEEL HYPOTHETICAL 122.7 KD PROTEIN D1044.2 IN CHROMOSOME III
 pir||T15884 hypothetical protein D1044.2 - Caenorhabditis elegans
 gb|AAA50734.1| (U00065) D1044.2 gene product [Caenorhabditis elegans]
          Length = 1107

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 20/129 (15%), Positives = 40/129 (30%), Gaps = 33/129 (25%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHRM-----LTATQYVAPLMANFNPGYSDNST 55
           L     F+G   + I I + G +               ++T+++AP     +    +   
Sbjct: 171 LVHPISFFGSDYKTIYILSNGAVGFEASSRSYKSGILPSSTRFLAPFWNRND--LRNGGK 228

Query: 56  VVYFDNG-----------------------TVFVVQWDHVY---LQGWEDKGSFTFQAAL 89
           V Y +                         +  ++ WD +         ++ + TFQAA+
Sbjct: 229 VYYREVTKGRVLERGQSEIRYQYDKNVKVKSALIITWDKMQPLNTAALPEENTNTFQAAI 288

Query: 90  HHDGRIVFA 98
                  FA
Sbjct: 289 FITANGTFA 297



 Score = 30.2 bits (68), Expect = 7.4
 Identities = 10/53 (18%), Positives = 19/53 (34%), Gaps = 4/53 (7%)

Query: 1   LSFDFPFYGHPLRQITIATGGFIFMGDVIHR--MLTATQY--VAPLMANFNPG 49
           L      +G    ++T+ + G I + +V      L   Q   +AP     +  
Sbjct: 534 LKKPLKIFGETTEKLTVTSTGLIAINEVNRDNGRLEDMQLVGIAPFFGPIDLS 586



>gb|AAF23818.1|AF218265_1 (AF218265) mucin Muc4 [Mus musculus]
          Length = 1403

 Score = 39.9 bits (93), Expect = 0.008
 Identities = 17/79 (21%), Positives = 28/79 (34%), Gaps = 5/79 (6%)

Query: 21  GFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQ-GWED 79
           G IF  + +       Q +           +D ++   +       V W +V      E 
Sbjct: 403 GAIFYQEYVTFYNEHHQLI----REVETLINDFTSSWGYRAKWTLKVTWVNVPAYTAQES 458

Query: 80  KGSFTFQAALHHDGRIVFA 98
            G+ T+QA L  DG   +A
Sbjct: 459 FGTNTYQAILSTDGSRSYA 477



>gb|AAA41120.1| (M15797) entactin [Rattus norvegicus]
          Length = 243

 Score = 39.2 bits (91), Expect = 0.013
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 29/100 (29%)

Query: 28  VIHRMLTATQYVAPLMANFNPG-------YSDNST----------------VVYFDNGTV 64
                  +   VAP +A+ +         Y ++ +                 V F   +V
Sbjct: 3   HPGTFPPSFGSVAPFLADLDTTDGLGNVYYREDLSPFIIQMAAEYVQRGFPEVSFQPTSV 62

Query: 65  FVVQWDHVYLQGWEDKGS------FTFQAALHHDGRIVFA 98
            VV W+ +   G             TFQA L       +A
Sbjct: 63  VVVTWESMAPCGGPSGSLVEEGKRNTFQAVLASSNSSSYA 102



>gb|AAF57124.1| (AE003777) CG15560 gene product [Drosophila melanogaster]
          Length = 619

 Score = 38.0 bits (88), Expect = 0.029
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 59  FDNGTVFVVQWDHVYLQGWEDK---GSFTFQAALHHDGRIVF 97
           F    V +  W +V   G  D     + TFQ  L  D    +
Sbjct: 293 FIPKHVVIATWKNVSFAGGIDNSLYTTNTFQMVLATDEVYTY 334



CPU time:    21.88 user secs.       0.91 sys. secs         22.79 total secs.

  Database: nr
    Posted date:  Dec 3, 2000  6:52 PM
  Number of letters in database: 187,673,620
  Number of sequences in database:  593,541
  
Lambda     K      H
   0.314    0.181    0.528 

Gapped
Lambda     K      H
   0.270   0.0636    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45655093
Number of Sequences: 593541
Number of extensions: 1925798
Number of successful extensions: 5299
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 54
length of query: 98
length of database: 187,673,620
effective HSP length: 44
effective length of query: 54
effective length of database: 161,557,816
effective search space: 8724122064
effective search space used: 8724122064
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.6 bits)
S2: 67 (30.1 bits)