BLASTP 2.2.6 [Apr-09-2003]

RID: 1063372683-9306-2174665.BLASTQ3

Query= gi|21363104|sp|Q21955|YNL5_CAEEL Hypothetical protein
R12B2_5 in chromosome III
         (780 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,522,899 sequences; 490,308,901 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25148756|ref|NP_741152.1|  putative protein (3G918) [Caen...   622   e-177
gi|25148761|ref|NP_741151.1|  putative protein (3G918) [Caen...   612   e-174
gi|7506661|pir||T16726  hypothetical protein R12B2.5 - Caeno...   575   e-163
gi|14043091|gb|AAH07529.1|AAH07529  Unknown (protein for IMA...    38   0.56 
gi|21748618|dbj|BAC03446.1|  FLJ00386 protein [Homo sapiens]       38   0.77 
gi|21312134|ref|NP_056973.2|  positive cofactor 2, glutamine...    38   0.78 
gi|14276857|gb|AAK58423.1|AF328769_1  PC2-glutamine-rich-ass...    38   0.78 
gi|27734440|sp|Q96RN5|PCAP_HUMAN  Positive cofactor 2 glutam...    37   0.98 

Alignments

>gi|25148756|ref|NP_741152.1| putative protein (3G918) [Caenorhabditis elegans]
 gi|21363104|sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III
 gi|17976542|gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans]
          Length = 780

 Score =  622 bits (1605), Expect = e-177
 Identities = 367/469 (78%), Positives = 367/469 (78%)

Query: 1   MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60
           MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI
Sbjct: 1   MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60

Query: 61  AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120
           AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA
Sbjct: 61  AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120

Query: 121 QARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTSIRPGGQITP 180
           QARN                                            DTSIRPGGQITP
Sbjct: 121 QARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSIRPGGQITP 180

Query: 181 GSQAPGGGPTPAPNVPFPNGSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           GSQAPGGGPTPAPNVPFPNGSSQ                                     
Sbjct: 181 GSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMMNGPPG 240

Query: 241 SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP 300
           SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP
Sbjct: 241 SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP 300

Query: 301 TGPSSVLESLINQPQQYPGHHNQMGPPGDRNVXXXXXXXXXXXXXXXXXXXXXPGMVPNQ 360
           TGPSSVLESLINQPQQYPGHHNQMGPPGDRNV                     PGMVPNQ
Sbjct: 301 TGPSSVLESLINQPQQYPGHHNQMGPPGDRNVAAQRAAAQQQQQQQQQQQQQRPGMVPNQ 360

Query: 361 GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE 420
           GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE
Sbjct: 361 GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE 420

Query: 421 YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN 469
           YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN
Sbjct: 421 YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN 469




 Score =  393 bits (1010), Expect = e-108
 Identities = 228/257 (88%), Positives = 228/257 (88%)

Query: 524 VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRNXXXXXXXXXX 583
           VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRN          
Sbjct: 524 VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRNSMSGSSMSGP 583

Query: 584 XXXXXXXXXXXTPNQKMGTPXXXXXXXXLDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA 643
                      TPNQKMGTP        LDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA
Sbjct: 584 SSGAPSMNPMGTPNQKMGTPGSMGGMSGLDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA 643

Query: 644 GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY 703
           GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY
Sbjct: 644 GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY 703

Query: 704 PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL 763
           PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL
Sbjct: 704 PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL 763

Query: 764 DVAFNVGNDFFYDNLNL 780
           DVAFNVGNDFFYDNLNL
Sbjct: 764 DVAFNVGNDFFYDNLNL 780



>gi|25148761|ref|NP_741151.1| putative protein (3G918) [Caenorhabditis elegans]
 gi|21450526|gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans]
          Length = 777

 Score =  612 bits (1579), Expect = e-174
 Identities = 364/469 (77%), Positives = 364/469 (77%), Gaps = 3/469 (0%)

Query: 1   MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60
           MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI
Sbjct: 1   MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60

Query: 61  AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120
           AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA   GNTPAGGTPGYRAPVPPDPQPTSA
Sbjct: 61  AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA---GNTPAGGTPGYRAPVPPDPQPTSA 117

Query: 121 QARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTSIRPGGQITP 180
           QARN                                            DTSIRPGGQITP
Sbjct: 118 QARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSIRPGGQITP 177

Query: 181 GSQAPGGGPTPAPNVPFPNGSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           GSQAPGGGPTPAPNVPFPNGSSQ                                     
Sbjct: 178 GSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMMNGPPG 237

Query: 241 SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP 300
           SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP
Sbjct: 238 SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP 297

Query: 301 TGPSSVLESLINQPQQYPGHHNQMGPPGDRNVXXXXXXXXXXXXXXXXXXXXXPGMVPNQ 360
           TGPSSVLESLINQPQQYPGHHNQMGPPGDRNV                     PGMVPNQ
Sbjct: 298 TGPSSVLESLINQPQQYPGHHNQMGPPGDRNVAAQRAAAQQQQQQQQQQQQQRPGMVPNQ 357

Query: 361 GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE 420
           GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE
Sbjct: 358 GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE 417

Query: 421 YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN 469
           YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN
Sbjct: 418 YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN 466




 Score =  393 bits (1009), Expect = e-108
 Identities = 228/257 (88%), Positives = 228/257 (88%)

Query: 524 VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRNXXXXXXXXXX 583
           VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRN          
Sbjct: 521 VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRNSMSGSSMSGP 580

Query: 584 XXXXXXXXXXXTPNQKMGTPXXXXXXXXLDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA 643
                      TPNQKMGTP        LDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA
Sbjct: 581 SSGAPSMNPMGTPNQKMGTPGSMGGMSGLDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA 640

Query: 644 GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY 703
           GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY
Sbjct: 641 GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY 700

Query: 704 PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL 763
           PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL
Sbjct: 701 PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL 760

Query: 764 DVAFNVGNDFFYDNLNL 780
           DVAFNVGNDFFYDNLNL
Sbjct: 761 DVAFNVGNDFFYDNLNL 777



>gi|7506661|pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans
          Length = 760

 Score =  575 bits (1483), Expect = e-163
 Identities = 347/469 (73%), Positives = 347/469 (73%), Gaps = 20/469 (4%)

Query: 1   MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60
           MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI
Sbjct: 1   MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTI 60

Query: 61  AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSA 120
           AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA                    DPQPTSA
Sbjct: 61  AKVINAINCNSKSAAVPSVLQPSQFHSPPCTTA--------------------DPQPTSA 100

Query: 121 QARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTSIRPGGQITP 180
           QARN                                            DTSIRPGGQITP
Sbjct: 101 QARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSIRPGGQITP 160

Query: 181 GSQAPGGGPTPAPNVPFPNGSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           GSQAPGGGPTPAPNVPFPNGSSQ                                     
Sbjct: 161 GSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMMNGPPG 220

Query: 241 SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP 300
           SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP
Sbjct: 221 SGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATP 280

Query: 301 TGPSSVLESLINQPQQYPGHHNQMGPPGDRNVXXXXXXXXXXXXXXXXXXXXXPGMVPNQ 360
           TGPSSVLESLINQPQQYPGHHNQMGPPGDRNV                     PGMVPNQ
Sbjct: 281 TGPSSVLESLINQPQQYPGHHNQMGPPGDRNVAAQRAAAQQQQQQQQQQQQQRPGMVPNQ 340

Query: 361 GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE 420
           GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE
Sbjct: 341 GMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLE 400

Query: 421 YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN 469
           YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN
Sbjct: 401 YLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPN 449




 Score =  394 bits (1012), Expect = e-108
 Identities = 228/257 (88%), Positives = 228/257 (88%)

Query: 524 VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRNXXXXXXXXXX 583
           VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRN          
Sbjct: 504 VHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRNSMSGSSMSGP 563

Query: 584 XXXXXXXXXXXTPNQKMGTPXXXXXXXXLDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA 643
                      TPNQKMGTP        LDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA
Sbjct: 564 SSGAPSMNPMGTPNQKMGTPGSMGGMSGLDDLNYDDFLPNPTPIDALQPTLHVGQNSMNA 623

Query: 644 GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY 703
           GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY
Sbjct: 624 GPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTY 683

Query: 704 PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL 763
           PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL
Sbjct: 684 PAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGL 743

Query: 764 DVAFNVGNDFFYDNLNL 780
           DVAFNVGNDFFYDNLNL
Sbjct: 744 DVAFNVGNDFFYDNLNL 760



>gi|14043091|gb|AAH07529.1|AAH07529 Unknown (protein for IMAGE:3350171) [Homo sapiens]
          Length = 384

 Score = 38.1 bits (87), Expect = 0.56
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 617 YDDFLPNPTPIDALQPTLHVGQNSMNAGPPVQRSNLNETARKELQILDARF--EIDPNHQ 674
           Y  F+P  T I     T  V           +R ++    + E+  LD +F   +DP+H 
Sbjct: 235 YRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHC 294

Query: 675 RHDANHIIVVCKIRNQQF---PPLRLVVPTTYPAGN-VTVDRA-VIDLDAYLYDDLQNSV 729
            ++   + ++CK+ ++     PPL L VP  YPA + + +DR    D + +L    +   
Sbjct: 295 SNNGT-VHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMT 353

Query: 730 YERLSRPGLSSITDYLNAWEEQVNQ 754
              L  P   S+T  LN W + V+Q
Sbjct: 354 SRLLQLPDKHSVTALLNTWAQSVHQ 378



>gi|21748618|dbj|BAC03446.1| FLJ00386 protein [Homo sapiens]
          Length = 811

 Score = 37.7 bits (86), Expect = 0.77
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 617 YDDFLPNPTPIDALQPTLHVGQNSMNAGPPVQRSNLNETARKELQILDARF--EIDPNHQ 674
           Y  F+P  T I     T  V           +R ++    + E+  LD +F   +DP+H 
Sbjct: 662 YRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHC 721

Query: 675 RHDANHIIVVCKIRNQQF---PPLRLVVPTTYPAGN-VTVDRA-VIDLDAYLYDDLQNSV 729
            ++   + ++CK+ ++     PPL L VP  YPA + + +DR    D + +L    +   
Sbjct: 722 SNNGT-VHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMT 780

Query: 730 YERLSRPGLSSITDYLNAWEEQVNQ 754
              L  P   S+T  LN W + V+Q
Sbjct: 781 SRLLQLPDKHSVTALLNTWAQSVHQ 805



>gi|21312134|ref|NP_056973.2| positive cofactor 2, glutamine/Q-rich-associated protein; TPA
           inducible protein; TPA inducible gene-1;
           PC2-glutamine-rich-associated protein; trinucleotide
           repeat containing 7 [Homo sapiens]
 gi|15559260|gb|AAH13985.1|AAH13985 PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Homo sapiens]
          Length = 748

 Score = 37.7 bits (86), Expect = 0.78
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 617 YDDFLPNPTPIDALQPTLHVGQNSMNAGPPVQRSNLNETARKELQILDARF--EIDPNHQ 674
           Y  F+P  T I     T  V           +R ++    + E+  LD +F   +DP+H 
Sbjct: 599 YRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHC 658

Query: 675 RHDANHIIVVCKIRNQQF---PPLRLVVPTTYPAGN-VTVDRA-VIDLDAYLYDDLQNSV 729
            ++   + ++CK+ ++     PPL L VP  YPA + + +DR    D + +L    +   
Sbjct: 659 SNNGT-VHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMT 717

Query: 730 YERLSRPGLSSITDYLNAWEEQVNQ 754
              L  P   S+T  LN W + V+Q
Sbjct: 718 SRLLQLPDKHSVTALLNTWAQSVHQ 742



>gi|14276857|gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens]
          Length = 746

 Score = 37.7 bits (86), Expect = 0.78
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 617 YDDFLPNPTPIDALQPTLHVGQNSMNAGPPVQRSNLNETARKELQILDARF--EIDPNHQ 674
           Y  F+P  T I     T  V           +R ++    + E+  LD +F   +DP+H 
Sbjct: 597 YRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHC 656

Query: 675 RHDANHIIVVCKIRNQQF---PPLRLVVPTTYPAGN-VTVDRA-VIDLDAYLYDDLQNSV 729
            ++   + ++CK+ ++     PPL L VP  YPA + + +DR    D + +L    +   
Sbjct: 657 SNNGT-VHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMT 715

Query: 730 YERLSRPGLSSITDYLNAWEEQVNQ 754
              L  P   S+T  LN W + V+Q
Sbjct: 716 SRLLQLPDKHSVTALLNTWAQSVHQ 740



>gi|27734440|sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (TPA-inducible
           gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa
           component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score = 37.4 bits (85), Expect = 0.98
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 617 YDDFLPNPTPIDALQPTLHVGQNSMNAGPPVQRSNLNETARKELQILDARF--EIDPNHQ 674
           Y  F+P  T I     T  V           +R ++    + E+  LD +F   +DP+H 
Sbjct: 639 YRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHC 698

Query: 675 RHDANHIIVVCKIRNQQF---PPLRLVVPTTYPAGN-VTVDRA-VIDLDAYLYDDLQNSV 729
            ++   + ++CK+ ++     PPL L VP  YPA + + +DR    D + +L    +   
Sbjct: 699 SNNGT-VHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMT 757

Query: 730 YERLSRPGLSSITDYLNAWEEQVNQ 754
              L  P   S+T  LN W + V+Q
Sbjct: 758 SRLLQLPDKHSVTALLNTWAQSVHQ 782





  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Sep 11, 2003  1:15 AM
  Number of letters in database: 490,308,901
  Number of sequences in database:  1,522,899
  
Lambda     K      H
   0.314    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,630,079
Number of Sequences: 1522899
Number of extensions: 1406895
Number of successful extensions: 3631
Number of sequences better than  1.0: 1
Number of HSP's better than  1.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3624
Number of HSP's gapped (non-prelim): 7
length of query: 780
length of database: 490,308,901
effective HSP length: 132
effective length of query: 648
effective length of database: 289,286,233
effective search space: 187457478984
effective search space used: 187457478984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 86 (37.7 bits)