RID=1063991691-3185-1977469.BLASTQ3, NP_173030 BLASTP 2.2.6 [Apr-09-2003]

RID: 1063991691-3185-1977469.BLASTQ3

Query= NP_173030 (117 letters)

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,524,159 sequences; 490,690,828 total letters


Results of PSI-Blast iteration 9

Distribution of 78 Blast Hits on the Query Sequence



Legend:

New sequence mark - means that the alignment score was below the threshold on the previous iteration

Checked mark - means that the alignment was checked on the previous iteration


Hit list size
Sequences with E-value BETTER than threshold
Related Structures Score E Sequences producing significant alignments: (bits) Value

 Checked mark gi|2133462|pir||S60123 hypothetical protein R10E11.1 - Caenorhab... 144 3e-34
 Checked mark gi|17552708|ref|NP_499161.1| CBP/p300 homolog (cbp-1) [Caenorhab... 143 4e-34 LocusLink info
 Checked mark gi|17552710|ref|NP_499160.1| CBP/p300 homolog (cbp-1) [Caenorhab... 143 5e-34 LocusLink info
 Checked mark gi|15218294|ref|NP_173030.1| expressed protein [Arabidopsis thal... 140 5e-33
 Checked mark gi|482238|pir||S41033 hypothetical protein K03H1.10 - Caenorhabd... 140 6e-33
 Checked mark gi|17554044|ref|NP_499201.1| CREB-binding protein like family me... 139 8e-33 LocusLink info
 Checked mark gi|27666550|ref|XP_235770.1| similar to E1A-associated protein p... 132 9e-31 LocusLink info
 Checked mark gi|4758056|ref|NP_004371.1| CREB binding protein [Homo sapiens] ... 129 7e-30 LocusLink info
 Checked mark gi|4321116|gb|AAC51331.2| CREB-binding protein [Homo sapiens] 129 7e-30 LocusLink info
 Checked mark gi|631119|pir||S39162 transcription coactivator CREB-binding pro... 129 8e-30
 Checked mark gi|27663074|ref|XP_235502.1| similar to E1A-associated protein p... 129 1e-29 LocusLink info
 Checked mark gi|24461867|gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 128 2e-29
 Checked mark gi|547239|gb|AAB31182.1| p300=transcription coactivator {N-termi... 128 3e-29
 Checked mark gi|21307831|gb|AAL54859.1| CREB-binding protein [Aplysia califor... 127 4e-29
 Checked mark gi|31753089|gb|AAH53889.1| Unknown (protein for IMAGE:6151364) [... 127 4e-29
 Checked mark gi|1345703|sp|P45481|CBP_MOUSE CREB-binding protein >gi|481698|p... 126 6e-29 LocusLink info
 Checked mark gi|19547885|gb|AAL87531.1| CREB-binding protein [Mus musculus] >... 126 7e-29 LocusLink info
 Checked mark gi|737920|prf||1923401A protein CBP 126 7e-29
 Checked mark gi|4557557|ref|NP_001420.1| E1A binding protein p300; E1A-bindin... 125 1e-28 LocusLink info
 Checked mark gi|28486616|ref|XP_283295.1| similar to E1A-associated protein p... 125 2e-28 LocusLink info
 Checked mark gi|25511635|pir||B86292 F7H2.12 protein - Arabidopsis thaliana >... 125 2e-28
 Checked mark gi|27881767|gb|AAH44677.1| Similar to CREB binding protein (Rubi... 124 2e-28 LocusLink info
 Checked mark gi|2996629|gb|AAC08447.1| CBP [Homo sapiens] 123 5e-28
 Checked mark gi|31204369|ref|XP_311133.1| ENSANGP00000004748 [Anopheles gambi... 118 2e-26
 Checked mark gi|7511830|pir||T13828 CREB-binding protein homolog - fruit fly ... 112 9e-25 LocusLink info
 Checked mark gi|24461860|gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 111 2e-24
 Checked mark gi|24640865|ref|NP_524642.2| nejire CG15319-PB [Drosophila melan... 111 2e-24 LocusLink info
 Checked mark gi|28071313|dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica ... 111 3e-24
 Checked mark gi|22329593|ref|NP_173031.2| expressed protein [Arabidopsis thal... 110 4e-24
 Checked mark gi|17552402|ref|NP_497144.1| CREB-binding protein like family me... 105 1e-22 LocusLink info
 Checked mark gi|4139873|pdb|1KDX|A Chain A, Kix Domain Of Mouse Cbp (Creb Bin... 105 2e-22 Related structures
 Checked mark gi|32489490|emb|CAE03805.1| OSJNBa0027H09.5 [Oryza sativa (japon... 104 3e-22
 Checked mark gi|17567279|ref|NP_509376.1| CREB-binding protein like (XI780) [... 101 3e-21 LocusLink info
 Checked mark gi|17552400|ref|NP_497145.1| CREB-binding protein like family me... 98 2e-20 LocusLink info
 Checked mark gi|7487910|pir||T01055 hypothetical protein YUP8H12R.38 - Arabid... 94 5e-19
 Checked mark gi|15219327|ref|NP_173115.1| expressed protein [Arabidopsis thal... 93 7e-19
 Checked mark gi|18412221|ref|NP_565197.1| p300/CBP acetyltransferase-related ... 93 9e-19
 Checked mark gi|17508323|ref|NP_493339.1| CREB-binding protein like family me... 92 1e-18 LocusLink info
 Checked mark gi|28279616|gb|AAH45472.1| Similar to PC2 (positive cofactor 2, ... 87 7e-17
 Checked mark gi|15230656|ref|NP_187904.1| CREB-binding protein -related [Arab... 86 1e-16
 Checked mark gi|17559186|ref|NP_507512.1| predicted CDS, putative cytoplasmic... 86 1e-16 LocusLink info
 Checked mark gi|25396635|pir||E89403 protein C06H5.4 [imported] - Caenorhabdi... 86 1e-16
 Checked mark gi|7493813|pir||T18235 transcription activator GAL11 homolog - y... 85 3e-16
 Checked mark gi|25518480|pir||D86302 hypothetical protein F17F16.9 - Arabidop... 79 1e-14
 Checked mark gi|21105779|gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] 78 3e-14
 Checked mark gi|27260984|dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonic... 77 4e-14
 Checked mark gi|19074594|ref|NP_586100.1| MADS domain [Encephalitozoon cunicu... 73 7e-13
 Checked mark gi|15226772|ref|NP_178842.1| hypothetical protein [Arabidopsis t... 73 1e-12
 Checked mark gi|32451779|gb|AAH54779.1| Pcqap protein [Mus musculus] 72 2e-12 LocusLink info
 Checked mark gi|21748618|dbj|BAC03446.1| FLJ00386 protein [Homo sapiens] 72 2e-12 LocusLink info
 Checked mark gi|21312134|ref|NP_056973.2| positive cofactor 2, glutamine/Q-ri... 71 3e-12 LocusLink info
 Checked mark gi|14276857|gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associat... 71 3e-12 LocusLink info
 Checked mark gi|27734440|sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q... 71 4e-12
 Checked mark gi|18394390|ref|NP_564004.1| expressed protein [Arabidopsis thal... 68 2e-11
 Checked mark gi|20177999|sp|Q924H2|PCAP_MOUSE Positive cofactor 2 glutamine/Q... 67 7e-11 LocusLink info
 Checked mark gi|15809028|ref|NP_291087.1| positive cofactor 2, glutamine/Q-ri... 65 2e-10 LocusLink info
 Checked mark gi|28374176|gb|AAH46263.1| Similar to PC2 (positive cofactor 2, ... 60 8e-09
 Checked mark gi|21956190|gb|AAM83255.1|AF378334_1 ARC105 [Xenopus laevis] 52 2e-06
 Checked mark gi|20891927|ref|XP_147188.1| positive cofactor 2, multiprotein c... 51 4e-06 LocusLink info
 Checked mark gi|3037135|gb|AAC12944.1| TPA inducible protein [Homo sapiens] 47 6e-05 LocusLink info
 Checked mark gi|27260985|dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonic... 46 1e-04

Sequences with E-value WORSE than threshold

  gi|19920468|ref|NP_608528.1| CG4184-PA [Drosophila melanogaster]... 40 0.008 LocusLink info
  gi|15230072|ref|NP_189057.1| expressed protein [Arabidopsis thal... 38 0.022
  gi|7506661|pir||T16726 hypothetical protein R12B2.5 - Caenorhabd... 38 0.031
  gi|9632980|ref|NP_050006.1| multifunctional protein [Sugarcane y... 37 0.048
  gi|30267511|gb|AAP21786.1| multifunctional protein [Sugarcane ye... 37 0.052
  gi|23470798|ref|ZP_00126130.1| hypothetical protein [Pseudomonas... 37 0.054
  gi|28871928|ref|NP_794547.1| lipoprotein, putative [Pseudomonas ... 37 0.058
  gi|22329083|ref|NP_680756.1| expressed protein [Arabidopsis thal... 36 0.11
  gi|34499307|ref|NP_903522.1| hypothetical protein CV3852 [Chromo... 36 0.16
  gi|15610187|ref|NP_217566.1| hypothetical protein Rv3050c [Mycob... 35 0.22
  gi|6324522|ref|NP_014591.1| Regulates transcription of a diverse... 35 0.25
  gi|171550|gb|AAA34622.1| auxiliary activator 35 0.25
  gi|19704464|ref|NP_604026.1| Chromosome partition protein smc [F... 34 0.50
  gi|25148756|ref|NP_741152.1| putative protein (3G918) [Caenorhab... 34 0.57 LocusLink info
  gi|25148761|ref|NP_741151.1| putative protein (3G918) [Caenorhab... 34 0.62 LocusLink info
  gi|984193|emb|CAA62537.1| transcriptional activator [Saccharomyc... 33 0.72

Alignments
>gi|2133462|pir||S60123   hypothetical protein R10E11.1 - Caenorhabditis elegans
          Length = 2027

 Score =  144 bits (364), Expect = 3e-34
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 4   NNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIA 61
           N   P+LP  +    T +W  Q+  D R  +V K+++ +             + +L   A
Sbjct: 580 NGEIPNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLVKAIFPEPNQEAMNDNRLKDLIAYA 639

Query: 62  ARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS------AAIPAANNGTSIDSI 115
            + E+++F  A ++ +Y   ++ K+  ++ + Q    S       A    A   ++  + 
Sbjct: 640 RKVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNSRLNQGAAAHDQYAIPPSNELAQ 699
>gi|17552708|ref|NP_499161.1|  LocusLink info CBP/p300 homolog (cbp-1) [Caenorhabditis elegans]
 gi|14530537|emb|CAA82353.2|   C. elegans CBP-1 protein (corresponding sequence R10E11.1a)
           [Caenorhabditis elegans]
          Length = 2045

 Score =  143 bits (363), Expect = 4e-34
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 4   NNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIA 61
           N   P+LP  +    T +W  Q+  D R  +V K+++ +             + +L   A
Sbjct: 569 NGEIPNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLVKAIFPEPNQEAMNDNRLKDLIAYA 628

Query: 62  ARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS------AAIPAANNGTSIDSI 115
            + E+++F  A ++ +Y   ++ K+  ++ + Q    S       A    A   ++  + 
Sbjct: 629 RKVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNSRLNQGAAAHDQYAIPPSNELAQ 688
>gi|17552710|ref|NP_499160.1|  LocusLink info CBP/p300 homolog (cbp-1) [Caenorhabditis elegans]
 gi|20455476|sp|P34545|CBP1_CAEEL   Protein cbp-1
 gi|25299632|pir||G88564   protein R10E11.1 [imported] - Caenorhabditis elegans
 gi|17645979|emb|CAD18875.1|   C. elegans CBP-1 protein (corresponding sequence R10E11.1b)
           [Caenorhabditis elegans]
          Length = 2056

 Score =  143 bits (362), Expect = 5e-34
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 4   NNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIA 61
           N   P+LP  +    T +W  Q+  D R  +V K+++ +             + +L   A
Sbjct: 580 NGEIPNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLVKAIFPEPNQEAMNDNRLKDLIAYA 639

Query: 62  ARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS------AAIPAANNGTSIDSI 115
            + E+++F  A ++ +Y   ++ K+  ++ + Q    S       A    A   ++  + 
Sbjct: 640 RKVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNSRLNQGAAAHDQYAIPPSNELAQ 699
>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  140 bits (353), Expect = 5e-33
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
           AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
>gi|482238|pir||S41033   hypothetical protein K03H1.10 - Caenorhabditis elegans  (fragment)
          Length = 316

 Score =  140 bits (353), Expect = 6e-33
 Identities = 22/110 (20%), Positives = 47/110 (42%)

Query: 3   NNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAA 62
            N    +LP     + T +W  Q+  D R  IV K+++ +           + +L   A 
Sbjct: 144 TNGNISNLPPPNVPVRTKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYAR 203

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSI 112
           + E+++F  A+++ +Y   ++ K+  ++ + Q    S     AA +    
Sbjct: 204 KVEKEVFETAIDRKNYYHLLAEKIYEIQKELQEKKNSRLNQGAAQSPLDE 253
>gi|17554044|ref|NP_499201.1|  LocusLink info CREB-binding protein like family member (36.7 kD) (3L15)
           [Caenorhabditis elegans]
 gi|25395947|pir||D88569   protein K03H1.10 [imported] - Caenorhabditis elegans
 gi|3877003|emb|CAA82940.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
 gi|3878179|emb|CAA82665.1|   Hypothetical protein K03H1.10 [Caenorhabditis elegans]
          Length = 322

 Score =  139 bits (352), Expect = 8e-33
 Identities = 22/110 (20%), Positives = 47/110 (42%)

Query: 3   NNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAA 62
            N    +LP     + T +W  Q+  D R  IV K+++ +           + +L   A 
Sbjct: 150 TNGNISNLPPPNVPVRTKEWHRQVTNDLRNHIVGKLVKAICPAPEMMNDIRLKDLNAYAR 209

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSI 112
           + E+++F  A+++ +Y   ++ K+  ++ + Q    S     AA +    
Sbjct: 210 KVEKEVFETAIDRKNYYHLLAEKIYEIQKELQEKKNSRLNQGAAQSPLDE 259
>gi|27666550|ref|XP_235770.1|  LocusLink info similar to E1A-associated protein p300 [Rattus norvegicus]
          Length = 1605

 Score =  132 bits (334), Expect = 9e-31
 Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 12/126 (9%)

Query: 1   MDNNNWR------PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPE 52
           M+ N         P+            W   +  D R  +V+K+++ +            
Sbjct: 173 MNENASVASLGPLPTAAQPSSTGIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDR 232

Query: 53  GINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS----AAIPAANN 108
            +  L   A + E  ++  A N+ +Y   ++ K+  ++ + +    +       +P+A  
Sbjct: 233 RMENLVAYARKVEGDMYESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPSAPG 292

Query: 109 GTSIDS 114
              +  
Sbjct: 293 MVPVPM 298
>gi|4758056|ref|NP_004371.1|  LocusLink info CREB binding protein [Homo sapiens]
 gi|3023440|sp|Q92793|CBP_HUMAN  LocusLink info CREB-binding protein
 gi|2443859|gb|AAC51770.1|  LocusLink info CREB-binding protein
          Length = 2442

 Score =  129 bits (326), Expect = 7e-30
 Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 3   NNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRI 60
             +  P+            W   +  D R  +V+K+++ +             +  L   
Sbjct: 573 TLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAY 632

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS-------AAIPAANNGTSID 113
           A + E  ++  A ++ +Y   ++ K+  ++ + +    S           PA     +  
Sbjct: 633 AKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPAPGAQP 692

Query: 114 SI 115
            +
Sbjct: 693 PV 694
>gi|4321116|gb|AAC51331.2|  LocusLink info CREB-binding protein [Homo sapiens]
          Length = 2442

 Score =  129 bits (326), Expect = 7e-30
 Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 3   NNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRI 60
             +  P+            W   +  D R  +V+K+++ +             +  L   
Sbjct: 573 TLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAY 632

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS-------AAIPAANNGTSID 113
           A + E  ++  A ++ +Y   ++ K+  ++ + +    S           PA     +  
Sbjct: 633 AKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPAPGAQP 692

Query: 114 SI 115
            +
Sbjct: 693 PV 694
>gi|631119|pir||S39162   transcription coactivator CREB-binding protein - human
          Length = 2440

 Score =  129 bits (326), Expect = 8e-30
 Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 3   NNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRI 60
             +  P+            W   +  D R  +V+K+++ +             +  L   
Sbjct: 573 TLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAY 632

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS-------AAIPAANNGTSID 113
           A + E  ++  A ++ +Y   ++ K+  ++ + +    S           PA     +  
Sbjct: 633 AKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPAPGAQP 692

Query: 114 SI 115
            +
Sbjct: 693 PV 694
>gi|27663074|ref|XP_235502.1|  LocusLink info similar to E1A-associated protein p300 [Rattus norvegicus]
          Length = 2156

 Score =  129 bits (325), Expect = 1e-29
 Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 12/126 (9%)

Query: 1   MDNNNWR------PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPE 52
           M+ N         P+            W   +  D R  +V+K+++ +            
Sbjct: 173 MNENASVASLGPLPTAAQPSSTGIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDR 232

Query: 53  GINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS----AAIPAANN 108
            +  L   A + E  ++  A N+ +Y   ++ K+  ++ + +    +       +P+A  
Sbjct: 233 RMENLVAYARKVEGDMYESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPSAPG 292

Query: 109 GTSIDS 114
              +  
Sbjct: 293 MVPVPM 298
>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  128 bits (323), Expect = 2e-29
 Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 1/116 (0%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MD NNWRP+ P GE  +DTGDWRTQL PDSRQ+IVNKIM+TLK+HLPFSG +G+NEL++I
Sbjct: 16  MDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKI 75

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIP 116
           A RFEEKI++ A +Q+DYLRKIS+KML+ME+KSQNA  +S         ++    P
Sbjct: 76  AGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSL-QSNNPGSSNRPPDP 130
>gi|547239|gb|AAB31182.1|   p300=transcription coactivator {N-terminal} [mice, Peptide Partial,
           688 aa]
          Length = 688

 Score =  128 bits (322), Expect = 3e-29
 Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIAARFE 65
           P+            W   +  D R  +V+K+++ +             +  L   A + E
Sbjct: 558 PTAAQPSSTGIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDRRMENLVAYARKVE 617

Query: 66  EKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS----AAIPAANNGTSIDS 114
             ++  A N+ +Y   ++ K+  ++ + +    +       +P A     +  
Sbjct: 618 GDMYESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAPGMGPVPM 670
>gi|21307831|gb|AAL54859.1|   CREB-binding protein [Aplysia californica]
          Length = 2245

 Score =  127 bits (320), Expect = 4e-29
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 2/113 (1%)

Query: 5   NWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIAA 62
              P +    P     DW  Q+  D R  +V+K+++ +             +  L   A 
Sbjct: 488 GNAPDIVKSIPVSSRKDWHAQVTQDLRNHLVHKLVQAIFPTPDQATLRDSRMKNLVAYAR 547

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSI 115
           + E  ++  A N+  Y   ++ K+  ++ + +        +  A N       
Sbjct: 548 KVEGDMYESANNRGQYYHLLAEKIYKIQKELEEKRIQRMKVQNAPNAQVPGMQ 600
>gi|31753089|gb|AAH53889.1|   Unknown (protein for IMAGE:6151364) [Homo sapiens]
          Length = 1553

 Score =  127 bits (319), Expect = 4e-29
 Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 12/128 (9%)

Query: 1   MDNNNW------RPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPE 52
           M  N         P+            W   +  D R  +V+K+++ +            
Sbjct: 544 MSENASVPSLGPMPTAAQPSTTGIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDR 603

Query: 53  GINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS----AAIPAANN 108
            +  L   A + E  ++  A N+ +Y   ++ K+  ++ + +    +       +P A  
Sbjct: 604 RMENLVAYARKVEGDMYESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAG 663

Query: 109 GTSIDSIP 116
              +   P
Sbjct: 664 MVPVSMNP 671
>gi|1345703|sp|P45481|CBP_MOUSE  LocusLink info CREB-binding protein
 gi|481698|pir||S39161   CREB-binding protein - mouse
 gi|435855|gb|AAB28651.1|  LocusLink info CREB-binding protein; CBP [Mus sp.]
          Length = 2441

 Score =  126 bits (318), Expect = 6e-29
 Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 9/120 (7%)

Query: 5   NWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIAA 62
           +  P+            W   +  D R  +V+K+++ +             +  L   A 
Sbjct: 574 STIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAK 633

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS-------AAIPAANNGTSIDSI 115
           + E  ++  A ++ +Y   ++ K+  ++ + +    +           PA     +   +
Sbjct: 634 KVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRTRLHKQGILGNQPALPASGAQPPV 693
>gi|19547885|gb|AAL87531.1|  LocusLink info CREB-binding protein [Mus musculus]
 gi|19547887|gb|AAL87532.1|  LocusLink info CREB-binding protein [Mus musculus]
          Length = 2429

 Score =  126 bits (318), Expect = 7e-29
 Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 9/120 (7%)

Query: 5   NWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIAA 62
           +  P+            W   +  D R  +V+K+++ +             +  L   A 
Sbjct: 568 STIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAK 627

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS-------AAIPAANNGTSIDSI 115
           + E  ++  A ++ +Y   ++ K+  ++ + +    S           PA     +   +
Sbjct: 628 KVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPASGAQPPV 687
>gi|737920|prf||1923401A   protein CBP
          Length = 2441

 Score =  126 bits (317), Expect = 7e-29
 Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 9/120 (7%)

Query: 5   NWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIAA 62
           +  P+            W  ++  D R  +V+K+++ +             +  L   A 
Sbjct: 574 STIPTAAPPSSTGVRKGWHERVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAK 633

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS-------AAIPAANNGTSIDSI 115
           + E  ++  A ++ +Y   ++ K+  ++ + +    +           PA     +   +
Sbjct: 634 KVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRTRLHKQGILGNQPALPASGAQPPV 693
>gi|4557557|ref|NP_001420.1|  LocusLink info E1A binding protein p300; E1A-binding protein, 300kD [Homo sapiens]
 gi|3024341|sp|Q09472|P300_HUMAN  LocusLink info E1A-associated protein p300
 gi|627657|pir||A54277   transcription adaptor protein p300 - human
 gi|495301|gb|AAA18639.1|  LocusLink info p300 protein
          Length = 2414

 Score =  125 bits (316), Expect = 1e-28
 Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 12/128 (9%)

Query: 1   MDNNNW------RPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPE 52
           M  N         P+            W   +  D R  +V+K+++ +            
Sbjct: 544 MSENASVPSLGPMPTAAQPSTTGIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDR 603

Query: 53  GINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS----AAIPAANN 108
            +  L   A + E  ++  A N+ +Y   ++ K+  ++ + +    +       +P A  
Sbjct: 604 RMENLVAYARKVEGDMYESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAAG 663

Query: 109 GTSIDSIP 116
              +   P
Sbjct: 664 MVPVSMNP 671
>gi|28486616|ref|XP_283295.1|  LocusLink info similar to E1A-associated protein p300 [Mus musculus]
 gi|29244384|ref|NP_808489.1|  LocusLink info hypothetical protein A730011L11 [Mus musculus]
 gi|26335221|dbj|BAC31311.1|  LocusLink info unnamed protein product [Mus musculus]
          Length = 714

 Score =  125 bits (314), Expect = 2e-28
 Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIAARFE 65
           P+            W   +  D R  +V+K+++ +             +  L   A + E
Sbjct: 558 PTAAQPSSTGIRKQWHEDITQDLRNHLVHKLVQAIFPTPDPAALKDRRMENLVAYARKVE 617

Query: 66  EKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS----AAIPAANNGTSIDS 114
             ++  A N+ +Y   ++ K+  ++ + +    +       +P A     +  
Sbjct: 618 GDMYESANNRAEYYHLLAEKIYKIQKELEEKRRTRLQKQNMLPNAPGMGPVPM 670
>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  125 bits (314), Expect = 2e-28
 Identities = 117/148 (79%), Positives = 117/148 (79%), Gaps = 31/148 (20%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AARFEEKIFSGALNQ-------------------------------TDYLRKISMKMLTM 89
           AARFEEKIFSGALNQ                               TDYLRKISMKMLTM
Sbjct: 61  AARFEEKIFSGALNQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120

Query: 90  ETKSQNAAGSSAAIPAANNGTSIDSIPT 117
           ETKSQNAAGSSAAIPAANNGTSIDSIPT
Sbjct: 121 ETKSQNAAGSSAAIPAANNGTSIDSIPT 148
>gi|27881767|gb|AAH44677.1|  LocusLink info Similar to CREB binding protein (Rubinstein-Taybi syndrome)
           [Xenopus laevis]
          Length = 1047

 Score =  124 bits (313), Expect = 2e-28
 Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 3   NNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRI 60
           N+   P+            W   +  D R  +V+K+++ +             +  L   
Sbjct: 562 NHGTMPTAAPPSSTGVRKAWHEHVTQDLRNHLVHKLVQAIFPTPDPAALKDRRMENLVAY 621

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIP---AANNGTSID-SIP 116
           A + E  ++  A ++ +Y   ++ K+  ++ + +    S        ++        + P
Sbjct: 622 ARKVEGDMYESANSRDEYYHFLAEKIYKIQKELEEKRRSRLQKQGIMSSQAPLQAPGAQP 681

Query: 117 T 117
           T
Sbjct: 682 T 682
>gi|2996629|gb|AAC08447.1|   CBP [Homo sapiens]
          Length = 555

 Score =  123 bits (310), Expect = 5e-28
 Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 3   NNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRI 60
             +  P+            W   +  D R  +V+K+++ +             +  L   
Sbjct: 307 TLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAY 366

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS-------AAIPAANNGTSID 113
           A + E  ++  A ++ +Y   ++ K+  ++ + +    S           PA     +  
Sbjct: 367 AKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPAPGAQP 426

Query: 114 SI 115
            +
Sbjct: 427 PV 428
>gi|31204369|ref|XP_311133.1|   ENSANGP00000004748 [Anopheles gambiae]
 gi|30178093|gb|EAA06516.2|   ENSANGP00000004748 [Anopheles gambiae str. PEST]
          Length = 2572

 Score =  118 bits (296), Expect = 2e-26
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 3   NNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKH--LPFSGPEGINELRRI 60
                PS+    P   T DW   + PD R  +V+K+++ +           + +  L   
Sbjct: 727 TGGTNPSMV-AVPVQGTKDWHHSVTPDLRNHLVHKLVQAIFPSPDPSAMFDKRMYNLVAY 785

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAA 102
           A + E  ++  A ++++Y   ++ K+  ++ + +        
Sbjct: 786 AKKVEGDMYEMANSRSEYYHLLAEKIYKIQKELEEKRQKRKE 827
>gi|7511830|pir||T13828   CREB-binding protein homolog - fruit fly (Drosophila melanogaster)
 gi|1916930|gb|AAB53050.1|  LocusLink info CREB-binding protein homolog [Drosophila melanogaster]
          Length = 3190

 Score =  112 bits (282), Expect = 9e-25
 Identities = 15/92 (16%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 13   GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKH--LPFSGPEGINELRRIAARFEEKIFS 70
            G P  +  DWR  +  D R  +V+K+++ +           + ++ L   A + E+ ++ 
Sbjct: 934  GPPGDNEKDWRESVTADLRNHLVHKLVQAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMYE 993

Query: 71   GALNQTDYLRKISMKMLTMETKSQNAAGSSAA 102
             A ++++Y   ++ K+  ++ + +        
Sbjct: 994  MAKSRSEYYHLLAEKIYKIQKELEEKRLKRKE 1025
>gi|24461860|gb|AAN62347.1|AF506028_14   CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score =  111 bits (280), Expect = 2e-24
 Identities = 62/93 (66%), Positives = 77/93 (82%)

Query: 9   SLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKI 68
           S   G   +D  DWR  L  DSRQ+IVNKIM+TLK+HLPFSGPEG+NEL+RIA RFEEKI
Sbjct: 4   SRQKGVAMLDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKI 63

Query: 69  FSGALNQTDYLRKISMKMLTMETKSQNAAGSSA 101
           F+ A +Q+DYLRKIS+KML+ME++SQNA+GS+ 
Sbjct: 64  FTSATSQSDYLRKISLKMLSMESRSQNASGSNE 96
>gi|24640865|ref|NP_524642.2|  LocusLink info nejire CG15319-PB [Drosophila melanogaster]
 gi|22833041|gb|AAF46516.2|  LocusLink info CG15319-PB [Drosophila melanogaster]
          Length = 3276

 Score =  111 bits (279), Expect = 2e-24
 Identities = 15/92 (16%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 13   GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKH--LPFSGPEGINELRRIAARFEEKIFS 70
            G P  +  DWR  +  D R  +V+K+++ +           + ++ L   A + E+ ++ 
Sbjct: 934  GPPGDNEKDWRESVTADLRNHLVHKLVQAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMYE 993

Query: 71   GALNQTDYLRKISMKMLTMETKSQNAAGSSAA 102
             A ++++Y   ++ K+  ++ + +        
Sbjct: 994  MAKSRSEYYHLLAEKIYKIQKELEEKRLKRKE 1025
>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  111 bits (278), Expect = 3e-24
 Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 12/121 (9%)

Query: 4   NNWRPSL-----------PN-GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGP 51
            NWRP+            PN   PA+  GDWR+QL  ++R +IVNKIM+TLKKHLP S P
Sbjct: 7   GNWRPTQGADPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVP 66

Query: 52  EGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111
           EG+NEL++IA RFEEKI++ A +Q+DYLRKIS+KML+METK+Q   G++  I   N   S
Sbjct: 67  EGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGS 126

Query: 112 I 112
            
Sbjct: 127 E 127
>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
           [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score =  110 bits (276), Expect = 4e-24
 Identities = 64/101 (63%), Positives = 72/101 (71%)

Query: 16  AMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQ 75
              TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQ
Sbjct: 1   MDTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60

Query: 76  TDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIP 116
           T+YLR+I MKML METKSQNAAGSS+A           S+P
Sbjct: 61  TEYLRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVP 101

 Score = 82.7 bits (204), Expect = 1e-15
 Identities = 53/82 (64%), Positives = 65/82 (79%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEK 67
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA   EE 
Sbjct: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEEL 157

Query: 68  IFSGALNQTDYLRKISMKMLTM 89
           IF+ A+NQ DYL KIS+KM TM
Sbjct: 158 IFNSAINQEDYLGKISLKMRTM 179
>gi|17552402|ref|NP_497144.1|  LocusLink info CREB-binding protein like family member (3A733) [Caenorhabditis
           elegans]
 gi|7496697|pir||T33579   hypothetical protein C29F9.6 - Caenorhabditis elegans
 gi|3790688|gb|AAC68748.1|   Hypothetical protein C29F9.6 [Caenorhabditis elegans]
          Length = 228

 Score =  105 bits (264), Expect = 1e-22
 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 1   MDNNNWRPSL--PNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELR 58
           M+  +  P +  P   P   +  W +++P   R+ ++ +I + +  H     P  I +++
Sbjct: 97  MNALSTIPIVKDPEPRPPGTSQPWHSEVPKTDREAVIERISKHIMLHPQRFEP--IWKIK 154

Query: 59  RIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSA 101
             A   E +IF  A ++ +Y R +  +    + K+    G  A
Sbjct: 155 EDARAAELQIFEAAGSRDEYYRMVEERAPREQDKAPEGPGQEA 197
>gi|4139873|pdb|1KDX|A  Related structures Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protein) In
          Complex With Phosphorylated Kinase Inducible Domain
          (Pkid) Of Rat Creb (Cyclic Amp Response Element Binding
          Protein), Nmr 17 Structures
          Length = 81

 Score =  105 bits (262), Expect = 2e-22
 Identities = 11/79 (13%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 19 TGDWRTQLPPDSRQKIVNKIMETLKKHLP--FSGPEGINELRRIAARFEEKIFSGALNQT 76
             W   +  D R  +V+K+++ +             +  L   A + E  ++  A ++ 
Sbjct: 3  RKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRD 62

Query: 77 DYLRKISMKMLTMETKSQN 95
          +Y   ++ K+  ++ + + 
Sbjct: 63 EYYHLLAEKIYKIQKELEE 81
>gi|32489490|emb|CAE03805.1|   OSJNBa0027H09.5 [Oryza sativa (japonica cultivar-group)]
          Length = 1392

 Score =  104 bits (261), Expect = 3e-22
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 12  NGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSG 71
               ++    W        R+ I+N +++               E++  A R E+   + 
Sbjct: 9   PASSSVSAAHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNK 68

Query: 72  ALNQTDYLRKISMKMLTMETK-SQNAAGSSAAIPAANNGTSI 112
             N+ DYLR I+ +++ ME K  ++ +  +   P+    +S 
Sbjct: 69  TTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGTTPSTQRPSSQ 110
>gi|17567279|ref|NP_509376.1|  LocusLink info CREB-binding protein like (XI780) [Caenorhabditis elegans]
 gi|7499689|pir||T16139   hypothetical protein F22F1.3 - Caenorhabditis elegans
 gi|1118044|gb|AAA83283.1|   Hypothetical protein F22F1.3 [Caenorhabditis elegans]
          Length = 295

 Score =  101 bits (252), Expect = 3e-21
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 24  TQLPPDSRQKIVNKIMETLKKHLPF--SGPEGINELRRIAARFEEKIFSGALNQTDYLRK 81
           + L    RQ ++ KI+                + EL+  A   E+K F     + +Y  +
Sbjct: 64  STLERGLRQYMITKIVREAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAE 123

Query: 82  ISMKMLTMETKSQNAAGSSAAIPAAN-NGTSIDSI 115
           ++  +L+M+   Q+    S   P +N   +   + 
Sbjct: 124 LARIILSMQKHLQSRPKGSYEDPYSNIPPSHELAD 158
>gi|17552400|ref|NP_497145.1|  LocusLink info CREB-binding protein like family member (3A735) [Caenorhabditis
           elegans]
 gi|7496696|pir||T33580   hypothetical protein C29F9.5 - Caenorhabditis elegans
 gi|3790687|gb|AAC68747.1|   Hypothetical protein C29F9.5 [Caenorhabditis elegans]
          Length = 226

 Score = 98.5 bits (245), Expect = 2e-20
 Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 9   SLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKK--HLPFSGPEGINELRRIAARFEE 66
           +    +       W  ++P   R +++ KI + +             ++  +  +   E 
Sbjct: 105 TPAEPKKPEHDQIWHLEVPKTYRSELIEKIYKGIMSNVKPGTLSEAQMDTWKEYSRSAEL 164

Query: 67  KIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPA 105
           +IF  A     Y      K+   +        +     +
Sbjct: 165 QIFDTAQKLEAYYHMAREKVCRYQEGFPRRQKTEEKDES 203
>gi|7487910|pir||T01055   hypothetical protein YUP8H12R.38 - Arabidopsis thaliana
 gi|3152587|gb|AAC17068.1|   Similar to CREB-binding protein homolog gb|U88570 from D.
           melanogaster and contains similarity to
           callus-associated protein gb|U01961 from Nicotiana
           tabacum.  EST gb|W43427 comes from this gene.
           [Arabidopsis thaliana]
          Length = 1516

 Score = 93.9 bits (233), Expect = 5e-19
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 30  SRQKIVNKIMETLKKHLPFSGPEGIN-ELRRIAARFEEKIFSGALNQTDYLR--KISMKM 86
            RQ +  +I   L++  P    E    +   +A R EE +F  A  + DY+    +  ++
Sbjct: 51  LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDYVNPSTLEPRL 110

Query: 87  LTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
            ++    Q    ++     AN+ +    IPT
Sbjct: 111 ASLIKGRQ---LNNYNQRHANSSSVGTMIPT 138
>gi|15219327|ref|NP_173115.1|   expressed protein [Arabidopsis thaliana]
          Length = 1706

 Score = 93.5 bits (232), Expect = 7e-19
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 30  SRQKIVNKIMETLKKHLPFSGPEGIN-ELRRIAARFEEKIFSGALNQTDYLRK--ISMKM 86
            RQ +   +   L++  P         +   +A R EE +F  A+ + DY+ +  +  ++
Sbjct: 73  LRQYMQTLVFNMLQQRQPSPADAASKAKYMDVARRLEEGLFKMAVTKEDYMNRSTLESRI 132

Query: 87  LTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
            ++    Q    ++     AN+ +    IPT
Sbjct: 133 TSLIKGRQ---INNYNQRHANSSSVGTMIPT 160
>gi|18412221|ref|NP_565197.1|   p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
 gi|12597461|gb|AAG60059.1|   p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
          Length = 1654

 Score = 93.1 bits (231), Expect = 9e-19
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 30  SRQKIVNKIMETLKKHLPFSGPEGIN-ELRRIAARFEEKIFSGALNQTDYLR--KISMKM 86
            RQ +  +I   L++  P    E    +   +A R EE +F  A  + DY+    +  ++
Sbjct: 51  LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDYVNPSTLEPRL 110

Query: 87  LTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
            ++    Q    ++     AN+ +    IPT
Sbjct: 111 ASLIKGRQ---LNNYNQRHANSSSVGTMIPT 138
>gi|17508323|ref|NP_493339.1|  LocusLink info CREB-binding protein like family member (80.3 kD) (1N890)
           [Caenorhabditis elegans]
 gi|7505888|pir||T23651   hypothetical protein M01E5.6 - Caenorhabditis elegans
 gi|3878635|emb|CAB07643.1|   Hypothetical protein M01E5.6 [Caenorhabditis elegans]
 gi|3879438|emb|CAB03290.1|   Hypothetical protein M01E5.6 [Caenorhabditis elegans]
          Length = 702

 Score = 92.3 bits (229), Expect = 1e-18
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 20/125 (16%)

Query: 3   NNNWRPSLPNGE-------------PAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPF- 48
           N N   +    +                 + +W   +  D R  +V K+++     +   
Sbjct: 570 NTNQISNEETPKIDIFEGYNGSFLFGTNTSKEW---IVEDIRNHMVGKLLKAFWPRIQNV 626

Query: 49  --SGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAA 106
                E   +L   A + E +I   + ++ +Y R + + +  +  K+       A     
Sbjct: 627 EEMNGELFKKLIANARKCETEILEASNDRDEYYRLMQLTVDQILKKTL-KKDQRATEHNH 685

Query: 107 NNGTS 111
              T 
Sbjct: 686 QQPTQ 690
>gi|28279616|gb|AAH45472.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Danio rerio]
          Length = 809

 Score = 86.6 bits (214), Expect = 7e-17
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 14/106 (13%)

Query: 14  EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
           +      DWR+   P  RQK+V +I E ++K              + +   E  +F+ A 
Sbjct: 2   DVPGPDSDWRS---PAFRQKVVAQIEEAMRKAGTGHT--------KSSTEMESHVFTKAK 50

Query: 74  NQTDYLRKISMKMLT---METKSQNAAGSSAAIPAANNGTSIDSIP 116
            + +YL  ++  ++    +  K+Q       A+     G      P
Sbjct: 51  TREEYLSMVARLIIHFRDIHKKAQGGPDPINALQNLPGGVPGVIGP 96
>gi|15230656|ref|NP_187904.1|   CREB-binding protein -related [Arabidopsis thaliana]
 gi|15795129|dbj|BAB02507.1|   CREB-binding protein-like [Arabidopsis thaliana]
          Length = 1670

 Score = 85.8 bits (212), Expect = 1e-16
 Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 24  TQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN-ELRRIAARFEEKIFSGALNQTDYL--R 80
           +Q     RQ+++N+    L++  P    +    +L  +A R E  ++  A ++ DYL  R
Sbjct: 37  SQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYLDFR 96

Query: 81  KISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
              +++ +   +  +   ++       + +    + T
Sbjct: 97  SFDVRVESTLKQLLSQRRAN------PSSSVSTMVQT 127
>gi|17559186|ref|NP_507512.1|  LocusLink info predicted CDS, putative cytoplasmic protein (5S403) [Caenorhabditis
           elegans]
 gi|7498278|pir||T20398   hypothetical protein E01B7.2 - Caenorhabditis elegans
 gi|5824421|emb|CAB54214.1|   Hypothetical protein E01B7.2 [Caenorhabditis elegans]
          Length = 230

 Score = 85.8 bits (212), Expect = 1e-16
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 21  DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80
           DW+  +  + R K V KI+ T         P  I+EL   +   E   +S A N+  Y  
Sbjct: 56  DWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRYLYDG 115

Query: 81  KISMKMLTMETKSQNAA-----GSSAAIPAA 106
            I   + +M+                 IP+ 
Sbjct: 116 GIESMIQSMQIAINRDPYLTKIRQMNEIPST 146
>gi|25396635|pir||E89403   protein C06H5.4 [imported] - Caenorhabditis elegans
          Length = 337

 Score = 85.8 bits (212), Expect = 1e-16
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 21  DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80
           DW+  +  + R K V KI+ T         P  I+EL   +   E   +S A N+  Y  
Sbjct: 177 DWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRYLYDG 236

Query: 81  KISMKMLTMETKSQNAA-----GSSAAIPAA 106
            I   + +M+                 IP+ 
Sbjct: 237 GIESMIQSMQIAINRDPYLTKIRQMNEIPST 267
>gi|7493813|pir||T18235   transcription activator GAL11 homolog - yeast (Candida albicans)
 gi|3859719|emb|CAA21993.1|   possible regulatory protein [Candida albicans]
          Length = 1145

 Score = 84.6 bits (209), Expect = 3e-16
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 5   NWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPE-GINELRRIAAR 63
           N       G  +     WR     + RQK+V  I+ TL + L  S P   +  L ++A  
Sbjct: 6   NQNSLQQMGGGSNPNASWRAMYSGEERQKVVQIIINTLTE-LHGSNPNFNVQRLSKMAQD 64

Query: 64  FEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPA 105
           FE+ ++  + ++ DYLR I MK+  +  + Q  A +      
Sbjct: 65  FEKLVYERSASKEDYLRAIKMKVHQLRVQKQQIAANQGGQIN 106
>gi|25518480|pir||D86302   hypothetical protein F17F16.9 - Arabidopsis thaliana
 gi|9954735|gb|AAG09088.1|AC026237_9   Hypothetical protein [Arabidopsis thaliana]
          Length = 238

 Score = 79.2 bits (195), Expect = 1e-14
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 30  SRQKIVNKIMETLKKHLPFSGPEGIN-ELRRIAARFEEKIFSGALNQTDYLR--KISMKM 86
            R+ + + I   L+K  P    +    +    A R EE +F  A+ + +YL    +  ++
Sbjct: 8   IRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNPSTLESRL 67

Query: 87  LTMETKSQNAAGSSAAIPAANNGTSIDSI-PT 117
            ++    Q    +      A++ T   +I PT
Sbjct: 68  TSLIKGRQ---LNKYKHQHADSSTLGTTITPT 96
>gi|21105779|gb|AAM34787.1|AF512558_1   HAC5 [Arabidopsis thaliana]
          Length = 453

 Score = 78.1 bits (192), Expect = 3e-14
 Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 24  TQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN-ELRRIAARFEEKIFSGALNQTDYL--R 80
           +Q     RQ+++N+    L++  P    +    +L  +A R E  ++  A ++ DYL  R
Sbjct: 6   SQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYLDFR 65

Query: 81  KISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
              +++ +   +  +   ++       + +    + T
Sbjct: 66  SFDVRVESTLKQLLSQRRAN------PSSSVSTMVQT 96
>gi|27260984|dbj|BAC45101.1|   OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score = 77.3 bits (190), Expect = 4e-14
 Identities = 24/64 (37%), Positives = 42/64 (65%)

Query: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80
          DWRT+L  D R ++   I+ +L+  L  +    + +L+++AAR EE+I+  A++  DYLR
Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71

Query: 81 KISM 84
          +IS+
Sbjct: 72 RISL 75
>gi|19074594|ref|NP_586100.1|   MADS domain [Encephalitozoon cuniculi]
 gi|19069236|emb|CAD25704.1|   MADS domain [Encephalitozoon cuniculi]
          Length = 776

 Score = 73.5 bits (180), Expect = 7e-13
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 25  QLPPDSRQKIVNKIMETLKK--HLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKI 82
            L  + R++++ K+   LK+    P   P  I E    A R E++I+  + ++ +YLR +
Sbjct: 1   MLSQEERKQMILKLFVALKESNIFPGYTPVQIKE---AAIRAEQRIYEESGSKEEYLRGM 57

Query: 83  SMKMLTMETKSQNAAGSSAAIPAAN 107
             +   +E    N + +     +  
Sbjct: 58  DERFQRIERVVSNRSRADGRGKSTQ 82
>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score = 72.7 bits (178), Expect = 1e-12
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 3  NNNWRPSLPNG--EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
          N NW+P+   G  + A +  DWR+Q  P+ RQK+++KI+E  K+         IN+   I
Sbjct: 4  NTNWKPNEQGGNRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---I 60

Query: 61 AARFEEKIFSGALNQT 76
          A++FEE  +S A ++T
Sbjct: 61 ASKFEENFYSIATDKT 76
>gi|32451779|gb|AAH54779.1|  LocusLink info Pcqap protein [Mus musculus]
          Length = 749

 Score = 71.9 bits (176), Expect = 2e-12
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 14  EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
           + +    DWR+      RQK+V++I + ++K              + +   E  +F  A 
Sbjct: 2   DVSGQETDWRS---AAFRQKLVSQIEDAMRKAGVAH--------SKSSKDMESHVFLKAK 50

Query: 74  NQTDYLRKISMKMLTMETKSQNAAGSSAAIP-AANNGTSIDSIP 116
            + +YL  ++  ++         + +S + P  A    +    P
Sbjct: 51  TRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTP 94
>gi|21748618|dbj|BAC03446.1|  LocusLink info FLJ00386 protein [Homo sapiens]
          Length = 811

 Score = 71.5 bits (175), Expect = 2e-12
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 14  EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
           + +    DWR+      RQK+V++I + ++K              + +   E  +F  A 
Sbjct: 25  DVSGQETDWRST---AFRQKLVSQIEDAMRKAGVAH--------SKSSKDMESHVFLKAK 73

Query: 74  NQTDYLRKISMKMLTMETKSQNAAGSSAAIP 104
            + +YL  ++  ++         + +S + P
Sbjct: 74  TRDEYLSLVARLIIHFRDIHNKKSQASVSDP 104
>gi|21312134|ref|NP_056973.2|  LocusLink info positive cofactor 2, glutamine/Q-rich-associated protein; TPA
           inducible protein; TPA inducible gene-1;
           PC2-glutamine-rich-associated protein; trinucleotide
           repeat containing 7 [Homo sapiens]
 gi|15559260|gb|AAH13985.1|AAH13985  LocusLink info PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Homo sapiens]
          Length = 748

 Score = 71.1 bits (174), Expect = 3e-12
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 14  EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
           + +    DWR+      RQK+V++I + ++K              + +   E  +F  A 
Sbjct: 2   DVSGQETDWRST---AFRQKLVSQIEDAMRKAGVAH--------SKSSKDMESHVFLKAK 50

Query: 74  NQTDYLRKISMKMLTMETKSQNAAGSSAAIP 104
            + +YL  ++  ++         + +S + P
Sbjct: 51  TRDEYLSLVARLIIHFRDIHNKKSQASVSDP 81
>gi|14276857|gb|AAK58423.1|AF328769_1  LocusLink info PC2-glutamine-rich-associated protein [Homo sapiens]
          Length = 746

 Score = 71.1 bits (174), Expect = 3e-12
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 14  EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
           + +    DWR+      RQK+V++I + ++K              + +   E  +F  A 
Sbjct: 2   DVSGQETDWRST---AFRQKLVSQIEDAMRKAGVAH--------SKSSKDMESHVFLKAK 50

Query: 74  NQTDYLRKISMKMLTMETKSQNAAGSSAAIP 104
            + +YL  ++  ++         + +S + P
Sbjct: 51  TRDEYLSLVARLIIHFRDIHNKKSQASVSDP 81
>gi|27734440|sp|Q96RN5|PCAP_HUMAN   Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (TPA-inducible
           gene-1) (TIG-1) (Activator-recruited cofactor 105 kDa
           component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score = 70.8 bits (173), Expect = 4e-12
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 14  EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
           + +    DWR+      RQK+V++I + ++K              + +   E  +F  A 
Sbjct: 2   DVSGQETDWRST---AFRQKLVSQIEDAMRKAGVAH--------SKSSKDMESHVFLKAK 50

Query: 74  NQTDYLRKISMKMLTMETKSQNAAGSSAAIP 104
            + +YL  ++  ++         + +S + P
Sbjct: 51  TRDEYLSLVARLIIHFRDIHNKKSQASVSDP 81
>gi|18394390|ref|NP_564004.1|   expressed protein [Arabidopsis thaliana]
 gi|21618240|gb|AAM67290.1|   unknown [Arabidopsis thaliana]
          Length = 128

 Score = 68.4 bits (167), Expect = 2e-11
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 30  SRQKIVNKIMETLKKHLPFSGPEGIN-ELRRIAARFEEKIFSGALNQTDYLR--KISMKM 86
            R+ + + I   L+K  P    +    +    A R EE +F  A+ + +YL    +  ++
Sbjct: 8   IRRSMRDAIFVQLEKRNPLPNDDASKGKHLDAAKRLEEGLFKMAMTKEEYLNPSTLESRL 67

Query: 87  LTMETKSQNAAGSSAAIPAANNGTSIDSI-PT 117
            ++    Q    +      A++ T   +I PT
Sbjct: 68  TSLIKGRQ---LNKYKHQHADSSTLGTTITPT 96
>gi|20177999|sp|Q924H2|PCAP_MOUSE  LocusLink info Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score = 66.9 bits (163), Expect = 7e-11
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 17  MDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQT 76
               DWR+      R K+V++I + ++K              + +   E  +F  A  + 
Sbjct: 5   GQETDWRS---AAFRLKLVSQIEDAMRKAGVAH--------SKSSKDMESHVFLKAKTRD 53

Query: 77  DYLRKISMKMLTMETKSQNAAGSSAAIP-AANNGTSIDSIP 116
           +YL  ++  ++         + +S + P  A    +    P
Sbjct: 54  EYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTP 94
>gi|15809028|ref|NP_291087.1|  LocusLink info positive cofactor 2, glutamine/Q-rich-associated protein [Mus
           musculus]
 gi|14276859|gb|AAK58424.1|AF328770_1  LocusLink info PC2-glutamine-rich-associated protein [Mus musculus]
          Length = 667

 Score = 65.4 bits (159), Expect = 2e-10
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 17  MDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQT 76
               DWR+      R K+V++I + ++K              + +   E  +F  A  + 
Sbjct: 5   GQETDWRS---AAFRLKLVSQIEDAMRKAGVAH--------SKSSKDMESHVFLKAKTRD 53

Query: 77  DYLRKISMKMLTMETKSQNAAGSSAAIP-AANNGTSIDSIP 116
           +YL  ++  ++         + +S + P  A    +    P
Sbjct: 54  EYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPTP 94
>gi|28374176|gb|AAH46263.1|   Similar to PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein [Xenopus laevis]
          Length = 846

 Score = 60.0 bits (145), Expect = 8e-09
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 32  QKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMET 91
           QK+V++I E ++K              + +   E  +F  A  + +YL  ++  ++    
Sbjct: 1   QKLVSQIDEAMRKAGVAHT--------KSSKEMESHVFLKAKTREEYLSLVARLIIHFRD 52

Query: 92  KSQNAAGSSAAIP 104
                  ++A+ P
Sbjct: 53  IFNKKNQTAASDP 65
>gi|21956190|gb|AAM83255.1|AF378334_1   ARC105 [Xenopus laevis]
          Length = 754

 Score = 51.9 bits (124), Expect = 2e-06
 Identities = 7/48 (14%), Positives = 19/48 (39%)

Query: 57  LRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIP 104
             + +   E  +F  A  + +YL  ++  ++         + ++A  P
Sbjct: 8   HTKSSKDMESHVFLKAKTREEYLSLVARLIIHFRDILNKKSQAAATDP 55
>gi|20891927|ref|XP_147188.1|  LocusLink info positive cofactor 2, multiprotein complex,
           glutamine/Q-rich-associated protein [Mus musculus]
          Length = 763

 Score = 50.7 bits (121), Expect = 4e-06
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 57  LRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIP-AANNGTSIDSI 115
             + +   E  +F  A  + +YL  ++  ++         + +S + P  A    +    
Sbjct: 8   HSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPT 67

Query: 116 P 116
           P
Sbjct: 68  P 68
>gi|3037135|gb|AAC12944.1|  LocusLink info TPA inducible protein [Homo sapiens]
          Length = 579

 Score = 46.9 bits (111), Expect = 6e-05
 Identities = 7/48 (14%), Positives = 19/48 (39%)

Query: 57  LRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIP 104
             + +   E  +F  A  + +YL  ++  ++         + +S + P
Sbjct: 8   HSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDP 55
>gi|27260985|dbj|BAC45102.1|   OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)]
          Length = 87

 Score = 45.7 bits (108), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 24/40 (60%)

Query: 35 VNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALN 74
          + + M  L+  L  +    + +L+++AAR EE+I+  A++
Sbjct: 35 IGQTMPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAID 74
>gi|19920468|ref|NP_608528.1|  LocusLink info CG4184-PA [Drosophila melanogaster]
 gi|5052530|gb|AAD38595.1|AF145620_1  LocusLink info BcDNA.GH03922 [Drosophila melanogaster]
 gi|7296198|gb|AAF51490.1|  LocusLink info CG4184-PA [Drosophila melanogaster]
          Length = 749

 Score = 39.9 bits (93), Expect = 0.008
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 19 TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDY 78
          T DW++Q     RQ +++KI + L        P    +  + A   E  IF  +  + +Y
Sbjct: 2  TEDWQSQ---KFRQNVISKIHDLL--------PPNAQDQTKNAGVMENHIFRKSRTKDEY 50

Query: 79 LRKISMKMLTMET 91
          L  ++   +  + 
Sbjct: 51 LGLVAKLFMHYKD 63
>gi|15230072|ref|NP_189057.1|   expressed protein [Arabidopsis thaliana]
          Length = 343

 Score = 38.4 bits (89), Expect = 0.022
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 11 PNGEPAMDTG-DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRR----IAARFE 65
          P   P       W +      R  I+ +I     +    +      E +     +  + E
Sbjct: 4  PGPRPYECVKRAWHSDRHQPIRGSIIRQIFRLAMEA-HSAATRKNKEWQEKLPVVVLKAE 62

Query: 66 EKIFSGALNQTDY 78
          E ++S A ++ +Y
Sbjct: 63 EIMYSKANSEEEY 75
>gi|7506661|pir||T16726   hypothetical protein R12B2.5 - Caenorhabditis elegans
          Length = 760

 Score = 38.0 bits (88), Expect = 0.031
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 18  DTGDWRTQLPPDSRQKIVNKIMETL----KKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
              DW +   P  R+ ++ ++   L    +       P         A + EE +F+  +
Sbjct: 2   SEEDWPS---PKFREHVIQRLEPELARNRQNAPNLPVPG-------DARQVEEYVFAKCM 51

Query: 74  NQTDYLRKISMKMLTMETKSQNAAGSSAAIP---AANNGTSIDSIPT 117
           ++ +Y+R I+  +  +   S++AA  S   P    +   T+ D  PT
Sbjct: 52  SKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTADPQPT 98
>gi|9632980|ref|NP_050006.1|   multifunctional protein [Sugarcane yellow leaf virus]
 gi|5616230|gb|AAD45683.1|AF157029_2   multifunctional protein [sugarcane yellow leaf virus]
          Length = 650

 Score = 37.2 bits (86), Expect = 0.048
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 24/90 (26%)

Query: 27  PPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKM 86
             +    IV+++++ +             +L  IA R EEK+   A N+           
Sbjct: 528 TKELLNNIVSQLIQKI-------------DLSSIATRVEEKLLRQAQNKQQ--------- 565

Query: 87  LTMETKSQNAAGSSAA--IPAANNGTSIDS 114
                KS     +S     P  N  +   +
Sbjct: 566 QNGGKKSPRKRKTSNTSSKPHTNGKSPPVT 595
>gi|30267511|gb|AAP21786.1|   multifunctional protein [Sugarcane yellow leaf virus]
          Length = 650

 Score = 37.2 bits (86), Expect = 0.052
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 24/90 (26%)

Query: 27  PPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKM 86
             +    IV+++++ +             +L  IA R EEK+   A N+           
Sbjct: 528 TKELLNNIVSQLIQKI-------------DLSSIATRVEEKLLRQAQNKQQ--------- 565

Query: 87  LTMETKSQNAAGSSAA--IPAANNGTSIDS 114
                KS     +S     P  N  +   +
Sbjct: 566 QNGGKKSPRKRKTSNTSSKPHTNGKSPPVT 595
>gi|23470798|ref|ZP_00126130.1|   hypothetical protein [Pseudomonas syringae pv. syringae B728a]
          Length = 224

 Score = 37.2 bits (86), Expect = 0.054
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 31  RQKIVNKIMETLKKHLPFSGPEGINELRRIA---ARFEEKIFSGAL 73
           RQ++ N +++ +   L    P  ++EL+  A   A+ E      A 
Sbjct: 162 RQEMRNDLIQKMMARLQQLTPSRLDELQAKADAVAKAEADALEAAQ 207
>gi|28871928|ref|NP_794547.1|   lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855181|gb|AAO58242.1|   lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 201

 Score = 37.2 bits (86), Expect = 0.058
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 31  RQKIVNKIMETLKKHLPFSGPEGINELRRIA---ARFEEKIFSGAL 73
           RQ++ N +++ L   L    P  ++EL+  A   A+ E      A 
Sbjct: 139 RQEMRNDLIQKLMARLQQLTPSRLDELQAKADAVAKAEADALEAAQ 184
>gi|22329083|ref|NP_680756.1|   expressed protein [Arabidopsis thaliana]
 gi|28392894|gb|AAO41883.1|   unknown protein [Arabidopsis thaliana]
 gi|28827750|gb|AAO50719.1|   unknown protein [Arabidopsis thaliana]
          Length = 238

 Score = 36.1 bits (83), Expect = 0.11
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 11 PNGEPAMD-TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRR----IAARFE 65
          P   P       W +      R  ++ +I   +   +         E +     +  R E
Sbjct: 4  PGPRPYDCIRRAWHSDRHQPMRGLLIQEIFR-IVCEIHSQSTRKNTEWQEKLPVVVLRAE 62

Query: 66 EKIFSGALNQTDYLRK 81
          E ++S A ++ +Y+  
Sbjct: 63 EIMYSKANSEAEYMDM 78
>gi|34499307|ref|NP_903522.1|   hypothetical protein CV3852 [Chromobacterium violaceum ATCC 12472]
 gi|34105158|gb|AAQ61514.1|   hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 350

 Score = 35.7 bits (82), Expect = 0.16
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 1   MDNNNWRPSLPNGEPAMD--TGDWRTQLPP--DSRQK-IVNKIMETLKKHLPFSGPEGIN 55
           ++N    P  P  + AMD     W +QL P  D R +     I++ LK+  P        
Sbjct: 268 INNTTCTPLPPLVQIAMDIFRIHWHSQLTPQDDVRSRANQEAIVKNLKEKYPGMTDAIAK 327

Query: 56  ELRRIA 61
            + ++A
Sbjct: 328 AIDKVA 333
>gi|15610187|ref|NP_217566.1|   hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv]
 gi|15842616|ref|NP_337653.1|   transcriptional regulator, TetR family [Mycobacterium
          tuberculosis CDC1551]
 gi|31794228|ref|NP_856721.1|   PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
          ASNC-FAMILY) [Mycobacterium bovis subsp. bovis
          AF2122/97]
 gi|7477469|pir||E70861   hypothetical protein Rv3050c - Mycobacterium tuberculosis
          (strain H37RV)
 gi|2791648|emb|CAA16135.1|   hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv]
 gi|13882931|gb|AAK47467.1|   transcriptional regulator, TetR family [Mycobacterium
          tuberculosis CDC1551]
 gi|31619823|emb|CAD96763.1|   PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
          ASNC-FAMILY) [Mycobacterium bovis subsp. bovis
          AF2122/97]
          Length = 246

 Score = 34.9 bits (80), Expect = 0.22
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 7  RPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGI-NELRRIAARFE 65
           P            D R++   + R+K+ N+I++   + +   GPE    ++   A   +
Sbjct: 4  IPRPHPSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAK 63

Query: 66 EKIFSGALNQTDYLRKISMKMLTM 89
           KI+    +++D L  I M++  M
Sbjct: 64 PKIYRHFTDKSDLLEAIGMRLRDM 87
>gi|6324522|ref|NP_014591.1|   Regulates transcription of a diverse array of genes. Required for
          mating and sporulation.; Gal11p [Saccharomyces
          cerevisiae]
 gi|2507028|sp|P19659|GALY_YEAST   TRANSCRIPTION REGULATORY PROTEIN GAL11
 gi|2133177|pir||S66736   transcription activator GAL11 - yeast (Saccharomyces cerevisiae)
 gi|1419856|emb|CAA99056.1|   GAL11 [Saccharomyces cerevisiae]
          Length = 1081

 Score = 34.9 bits (80), Expect = 0.25
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 12 NGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKK--HLPFSGPEGINELRRIAARFEEKIF 69
               +   D    L    R K VN +++ L     L     +  +++R  A  FE  +F
Sbjct: 1  MSAAPVQDKD---TLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALF 57

Query: 70 SGALNQTDYLRKISMKMLTMET 91
          + + ++ +Y+  ++ K+  M  
Sbjct: 58 AKSSSKKEYMDSMNEKVAVMRN 79
>gi|171550|gb|AAA34622.1|   auxiliary activator
          Length = 1081

 Score = 34.9 bits (80), Expect = 0.25
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 12 NGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKK--HLPFSGPEGINELRRIAARFEEKIF 69
               +   D    L    R K VN +++ L     L     +  +++R  A  FE  +F
Sbjct: 1  MSAAPVQDKD---TLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALF 57

Query: 70 SGALNQTDYLRKISMKMLTMET 91
          + + ++ +Y+  ++ K+  M  
Sbjct: 58 AKSSSKKEYMDSMNEKVAVMRN 79
>gi|19704464|ref|NP_604026.1|   Chromosome partition protein smc [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714732|gb|AAL95325.1|   Chromosome partition protein smc [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1193

 Score = 33.8 bits (77), Expect = 0.50
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 33  KIVNKIMETLKKHLPFSG--PEGINELRRIA---ARFEEKIFSGALNQTDYLRKISMKML 87
            + NKI + L++         E    +  +A     FE KIF+    + +    I  +  
Sbjct: 337 HLDNKIEKKLEEVTESKNKKDEISKNIVEMAAANKEFENKIFNLENIKVEKFDLIENRAK 396

Query: 88  TMETKSQNAAGSSAAIPA 105
            +         +S  I  
Sbjct: 397 KVRDLELEKQLASNEIEN 414
>gi|25148756|ref|NP_741152.1|  LocusLink info putative protein (3G918) [Caenorhabditis elegans]
 gi|21363104|sp|Q21955|YNL5_CAEEL   Hypothetical protein R12B2.5 in chromosome III
 gi|17976542|gb|AAA50743.3|   Hypothetical protein R12B2.5a [Caenorhabditis elegans]
          Length = 780

 Score = 33.8 bits (77), Expect = 0.57
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 18  DTGDWRTQLPPDSRQKIVNKIMETL----KKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
              DW +   P  R+ ++ ++   L    +       P         A + EE +F+  +
Sbjct: 2   SEEDWPS---PKFREHVIQRLEPELARNRQNAPNLPVPG-------DARQVEEYVFAKCM 51

Query: 74  NQTDYLRKISMKMLTMETKSQNAAGSSAAIPA 105
           ++ +Y+R I+  +  +   S++AA  S   P+
Sbjct: 52  SKDEYMRTIAKVINAINCNSKSAAVPSVLQPS 83
>gi|25148761|ref|NP_741151.1|  LocusLink info putative protein (3G918) [Caenorhabditis elegans]
 gi|21450526|gb|AAM54164.1|U00066_6   Hypothetical protein R12B2.5b [Caenorhabditis elegans]
          Length = 777

 Score = 33.8 bits (77), Expect = 0.62
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 18  DTGDWRTQLPPDSRQKIVNKIMETL----KKHLPFSGPEGINELRRIAARFEEKIFSGAL 73
              DW +   P  R+ ++ ++   L    +       P         A + EE +F+  +
Sbjct: 2   SEEDWPS---PKFREHVIQRLEPELARNRQNAPNLPVPG-------DARQVEEYVFAKCM 51

Query: 74  NQTDYLRKISMKMLTMETKSQNAAGSSAAIPA 105
           ++ +Y+R I+  +  +   S++AA  S   P+
Sbjct: 52  SKDEYMRTIAKVINAINCNSKSAAVPSVLQPS 83
>gi|984193|emb|CAA62537.1|   transcriptional activator [Saccharomyces cerevisiae]
          Length = 351

 Score = 33.4 bits (76), Expect = 0.72
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 12 NGEPAMDTGDWRTQLPPDSRQKIVNKIMETLK--KHLPFSGPEGINELRRIAARFEEKIF 69
               +   D    L    R K VN +++ L     L     +  +++R  A  FE  +F
Sbjct: 1  MSAAPVQDKD---TLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALF 57

Query: 70 SGALNQTDYLRKISMKMLTMET 91
          + + ++ +Y+  ++ K+  M  
Sbjct: 58 AKSSSKKEYMDSMNEKVAVMRN 79
  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Sep 15, 2003 10:23 PM
  Number of letters in database: 490,690,828
  Number of sequences in database:  1,524,159
  
Lambda     K      H
   0.311    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,620,946
Number of Sequences: 1524159
Number of extensions: 821016
Number of successful extensions: 3141
Number of sequences better than  1.0: 20
Number of HSP's better than  1.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3116
Number of HSP's gapped (non-prelim): 24
length of query: 117
length of database: 490,690,828
effective HSP length: 93
effective length of query: 24
effective length of database: 348,944,041
effective search space: 8374656984
effective search space used: 8374656984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.3 bits)