RID=1063991255-29975-2255007.BLASTQ3, NP

RID=1063991255-29975-2255007.BLASTQ3, NP_173030 BLASTP 2.2.6 [Apr-09-2003]
RID: 1063991255-29975-2255007.BLASTQ3
Query= NP_173030 (117 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,524,159 sequences; 490,690,828 total letters
Results of PSI-Blast iteration 2 Skip to the first new sequence
Distribution of 23 Blast Hits on the Query Sequence


Legend:
 - means that the alignment score was below the threshold on the previous iteration 
 - means that the alignment was checked on the previous iteration 


Hit list size 
Sequences with E-value BETTER than threshold
                                                                     Score    E
Sequences producing significant alignments:                          (bits) Value


 gi|15218294|ref|NP_173030.1|  expressed protein [Arabidopsis thal...   211   1e-54 

 gi|25511635|pir||B86292  F7H2.12 protein - Arabidopsis thaliana >...   197   3e-50 

 gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]    186   5e-47 

 gi|28071313|dbj|BAC56002.1|  P0705A05.20 [Oryza sativa (japonica ...   165   1e-40 

 gi|24461860|gb|AAN62347.1|AF506028_14  CTV.20 [Poncirus trifoliata]    164   2e-40 

 gi|22329593|ref|NP_173031.2|  expressed protein [Arabidopsis thal...   142   1e-33 

 gi|27260984|dbj|BAC45101.1|  OJ1705_C03.23 [Oryza sativa (japonic...   110   6e-24 

 gi|15226772|ref|NP_178842.1|  hypothetical protein [Arabidopsis t...   105   1e-22 

 gi|27260985|dbj|BAC45102.1|  OJ1705_C03.24 [Oryza sativa (japonic...    57   7e-08 

 gi|7493813|pir||T18235  transcription activator GAL11 homolog - y...    49   2e-05 


Sequences with E-value WORSE than threshold


 gi|32564502|ref|NP_871639.1|  zn-finger-like, PHD finger (3E419) ...    39   0.013 

 gi|7511830|pir||T13828  CREB-binding protein homolog - fruit fly ...    39   0.015 

 gi|17556128|ref|NP_497691.1|  zn-finger-like, PHD finger (84.0 kD...    39   0.018 

 gi|24640865|ref|NP_524642.2|  nejire CG15319-PB [Drosophila melan...    39   0.018 

 gi|32489490|emb|CAE03805.1|  OSJNBa0027H09.5 [Oryza sativa (japon...    37   0.047 

 gi|2133462|pir||S60123  hypothetical protein R10E11.1 - Caenorhab...    37   0.074 

 gi|17552708|ref|NP_499161.1|  CBP/p300 homolog (cbp-1) [Caenorhab...    37   0.076 

 gi|17552710|ref|NP_499160.1|  CBP/p300 homolog (cbp-1) [Caenorhab...    37   0.077 

 gi|21307831|gb|AAL54859.1|  CREB-binding protein [Aplysia califor...    36   0.097 

 gi|27260988|dbj|BAC45105.1|  OJ1705_C03.27 [Oryza sativa (japonic...    36   0.14  

 gi|15610187|ref|NP_217566.1|  hypothetical protein Rv3050c [Mycob...    35   0.31  

 gi|15965299|ref|NP_385652.1|  PROBABLE TRIGGER FACTOR PROTEIN [Si...    34   0.65  


Alignments








>gi|15218294|ref|NP_173030.1|   expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  211 bits (539), Expect = 1e-54
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117
           AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIPT 117



>gi|25511635|pir||B86292   F7H2.12 protein - Arabidopsis thaliana
 gi|8927657|gb|AAF82148.1|AC034256_12   EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  197 bits (501), Expect = 3e-50
 Identities = 117/148 (79%), Positives = 117/148 (79%), Gaps = 31/148 (20%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AARFEEKIFSGALNQ-------------------------------TDYLRKISMKMLTM 89
           AARFEEKIFSGALNQ                               TDYLRKISMKMLTM
Sbjct: 61  AARFEEKIFSGALNQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120

Query: 90  ETKSQNAAGSSAAIPAANNGTSIDSIPT 117
           ETKSQNAAGSSAAIPAANNGTSIDSIPT
Sbjct: 121 ETKSQNAAGSSAAIPAANNGTSIDSIPT 148



>gi|24461867|gb|AAN62354.1|AF506028_23   CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score =  186 bits (474), Expect = 5e-47
 Identities = 74/111 (66%), Positives = 94/111 (84%), Gaps = 2/111 (1%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           MD NNWRP+ P GE  +DTGDWRTQL PDSRQ+IVNKIM+TLK+HLPFSG +G+NEL++I
Sbjct: 16  MDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKI 75

Query: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111
           A RFEEKI++ A +Q+DYLRKIS+KML+ME+KSQNA  +S  + + N G+S
Sbjct: 76  AGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNS--LQSNNPGSS 124



>gi|28071313|dbj|BAC56002.1|   P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score =  165 bits (419), Expect = 1e-40
 Identities = 64/119 (53%), Positives = 83/119 (69%), Gaps = 12/119 (10%)

Query: 5   NWRPSL-----------PNG-EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPE 52
           NWRP+            PN   PA+  GDWR+QL  ++R +IVNKIM+TLKKHLP S PE
Sbjct: 8   NWRPTQGADPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPE 67

Query: 53  GINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111
           G+NEL++IA RFEEKI++ A +Q+DYLRKIS+KML+METK+Q   G++  I   N   S
Sbjct: 68  GLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGS 126



>gi|24461860|gb|AAN62347.1|AF506028_14   CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score =  164 bits (416), Expect = 2e-40
 Identities = 62/92 (67%), Positives = 77/92 (83%)

Query: 9   SLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKI 68
           S   G   +D  DWR  L  DSRQ+IVNKIM+TLK+HLPFSGPEG+NEL+RIA RFEEKI
Sbjct: 4   SRQKGVAMLDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKI 63

Query: 69  FSGALNQTDYLRKISMKMLTMETKSQNAAGSS 100
           F+ A +Q+DYLRKIS+KML+ME++SQNA+GS+
Sbjct: 64  FTSATSQSDYLRKISLKMLSMESRSQNASGSN 95



>gi|22329593|ref|NP_173031.2|   expressed protein [Arabidopsis thaliana]
 gi|25513497|pir||C86292   F7H2.13 protein - Arabidopsis thaliana
 gi|8927658|gb|AAF82149.1|AC034256_13   ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
           [Arabidopsis thaliana]
 gi|12083256|gb|AAG48787.1|AF332424_1   unknown protein [Arabidopsis thaliana]
          Length = 179

 Score =  142 bits (358), Expect = 1e-33
 Identities = 64/98 (65%), Positives = 72/98 (73%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDY 78
           TGDWRTQ P  SR +IVNKIMET  K LPF  PEG NELR+IA RFEEK+F+ A NQT+Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 79  LRKISMKMLTMETKSQNAAGSSAAIPAANNGTSIDSIP 116
           LR+I MKML METKSQNAAGSS+A           S+P
Sbjct: 64  LRQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVP 101




 Score =  104 bits (260), Expect = 3e-22
 Identities = 53/82 (64%), Positives = 65/82 (79%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEK 67
           PS+PN EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA   EE 
Sbjct: 98  PSVPNNEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEEL 157

Query: 68  IFSGALNQTDYLRKISMKMLTM 89
           IF+ A+NQ DYL KIS+KM TM
Sbjct: 158 IFNSAINQEDYLGKISLKMRTM 179



>gi|27260984|dbj|BAC45101.1|   OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score =  110 bits (275), Expect = 6e-24
 Identities = 24/64 (37%), Positives = 42/64 (65%)

Query: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80
          DWRT+L  D R ++   I+ +L+  L  +    + +L+++AAR EE+I+  A++  DYLR
Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71

Query: 81 KISM 84
          +IS+
Sbjct: 72 RISL 75



>gi|15226772|ref|NP_178842.1|   hypothetical protein [Arabidopsis thaliana]
 gi|25411357|pir||E84491   hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gi|4733973|gb|AAD28655.1|   hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score =  105 bits (263), Expect = 1e-22
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 3  NNNWRPSLPNG--EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
          N NW+P+   G  + A +  DWR+Q  P+ RQK+++KI+E  K+         IN+   I
Sbjct: 4  NTNWKPNEQGGNRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---I 60

Query: 61 AARFEEKIFSGALNQT 76
          A++FEE  +S A ++T
Sbjct: 61 ASKFEENFYSIATDKT 76



>gi|27260985|dbj|BAC45102.1|   OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)]
          Length = 87

 Score = 56.7 bits (136), Expect = 7e-08
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 39 METLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQ 75
          M  L+  L  +    + +L+++AAR EE+I+  A++ 
Sbjct: 39 MPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75



>gi|7493813|pir||T18235   transcription activator GAL11 homolog - yeast (Candida albicans)
 gi|3859719|emb|CAA21993.1|   possible regulatory protein [Candida albicans]
          Length = 1145

 Score = 48.6 bits (115), Expect = 2e-05
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 10  LPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPE-GINELRRIAARFEEKI 68
              G  +     WR     + RQK+V  I+ TL + L  S P   +  L ++A  FE+ +
Sbjct: 11  QQMGGGSNPNASWRAMYSGEERQKVVQIIINTLTE-LHGSNPNFNVQRLSKMAQDFEKLV 69

Query: 69  FSGALNQTDYLRKISMKMLTMETKSQNAAGS 99
           +  + ++ DYLR I MK+  +  + Q  A +
Sbjct: 70  YERSASKEDYLRAIKMKVHQLRVQKQQIAAN 100



>gi|32564502|ref|NP_871639.1|   zn-finger-like, PHD finger (3E419) [Caenorhabditis elegans]
 gi|27374455|gb|AAO12399.1|   Hypothetical protein Y53G8AR.2b [Caenorhabditis elegans]
          Length = 700

 Score = 39.4 bits (91), Expect = 0.013
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           M ++NW+P    G   +         P +  Q IVN     LK    FS P+      R 
Sbjct: 97  MISDNWKPEYSGGTQELA-------HPDELPQTIVNDDDFWLKPKDFFSTPKKRIVCNRN 149

Query: 61  AARFEEKI-----------FSGALNQTDYLRKISM--KMLTMET 91
           +  F+E I           +    +   +L+KI+M  K+LT +T
Sbjct: 150 SVDFDENIHEEVTTRDALHYEITAHDMAFLQKINMERKLLTGDT 193



>gi|7511830|pir||T13828   CREB-binding protein homolog - fruit fly (Drosophila melanogaster)
 gi|1916930|gb|AAB53050.1|   CREB-binding protein homolog [Drosophila melanogaster]
          Length = 3190

 Score = 39.0 bits (90), Expect = 0.015
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 13   GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEK 67
            G P  +  DWR  +  D R  +V+K+++ +    P S P  + +     L   A + E+ 
Sbjct: 934  GPPGDNEKDWRESVTADLRNHLVHKLVQAI---FPTSDPTTMQDKRMHNLVSYAEKVEKD 990

Query: 68   IFSGALNQTDY 78
            ++  A ++++Y
Sbjct: 991  MYEMAKSRSEY 1001



>gi|17556128|ref|NP_497691.1|   zn-finger-like, PHD finger (84.0 kD) (3E419) [Caenorhabditis
           elegans]
 gi|14574389|gb|AAF59546.2|   Hypothetical protein Y53G8AR.2a [Caenorhabditis elegans]
          Length = 741

 Score = 38.6 bits (89), Expect = 0.018
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)

Query: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60
           M ++NW+P    G   +         P +  Q IVN     LK    FS P+      R 
Sbjct: 138 MISDNWKPEYSGGTQELA-------HPDELPQTIVNDDDFWLKPKDFFSTPKKRIVCNRN 190

Query: 61  AARFEEKI-----------FSGALNQTDYLRKISM--KMLTMET 91
           +  F+E I           +    +   +L+KI+M  K+LT +T
Sbjct: 191 SVDFDENIHEEVTTRDALHYEITAHDMAFLQKINMERKLLTGDT 234



>gi|24640865|ref|NP_524642.2|   nejire CG15319-PB [Drosophila melanogaster]
 gi|22833041|gb|AAF46516.2|   CG15319-PB [Drosophila melanogaster]
          Length = 3276

 Score = 38.6 bits (89), Expect = 0.018
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 13   GEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAARFEEK 67
            G P  +  DWR  +  D R  +V+K+++ +    P S P  + +     L   A + E+ 
Sbjct: 934  GPPGDNEKDWRESVTADLRNHLVHKLVQAI---FPTSDPTTMQDKRMHNLVSYAEKVEKD 990

Query: 68   IFSGALNQTDY 78
            ++  A ++++Y
Sbjct: 991  MYEMAKSRSEY 1001



>gi|32489490|emb|CAE03805.1|   OSJNBa0027H09.5 [Oryza sativa (japonica cultivar-group)]
          Length = 1392

 Score = 37.5 bits (86), Expect = 0.047
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 30  SRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTM 89
            R+ I+N +++               E++  A R E+   +   N+ DYLR I+ +++ M
Sbjct: 27  LRRNIINNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNKTTNKEDYLRCIAQRIMNM 86

Query: 90  ETKSQNAAGSSAAIPA 105
           E K +     S ++ A
Sbjct: 87  EMKVRR----SQSLQA 98



>gi|2133462|pir||S60123   hypothetical protein R10E11.1 - Caenorhabditis elegans
          Length = 2027

 Score = 36.7 bits (84), Expect = 0.074
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN-----ELRRIAA 62
           P+LP  +    T +W  Q+  D R  +V K++   K   P    E +N     +L   A 
Sbjct: 584 PNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYAR 640

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGS 99
           + E+++F  A ++ +Y   ++ K+  ++ + Q    S
Sbjct: 641 KVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNS 677



>gi|17552708|ref|NP_499161.1|   CBP/p300 homolog (cbp-1) [Caenorhabditis elegans]
 gi|14530537|emb|CAA82353.2|   C. elegans CBP-1 protein (corresponding sequence R10E11.1a)
           [Caenorhabditis elegans]
          Length = 2045

 Score = 36.7 bits (84), Expect = 0.076
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN-----ELRRIAA 62
           P+LP  +    T +W  Q+  D R  +V K++   K   P    E +N     +L   A 
Sbjct: 573 PNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYAR 629

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGS 99
           + E+++F  A ++ +Y   ++ K+  ++ + Q    S
Sbjct: 630 KVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNS 666



>gi|17552710|ref|NP_499160.1|   CBP/p300 homolog (cbp-1) [Caenorhabditis elegans]
 gi|20455476|sp|P34545|CBP1_CAEEL   Protein cbp-1
 gi|25299632|pir||G88564   protein R10E11.1 [imported] - Caenorhabditis elegans
 gi|17645979|emb|CAD18875.1|   C. elegans CBP-1 protein (corresponding sequence R10E11.1b)
           [Caenorhabditis elegans]
          Length = 2056

 Score = 36.7 bits (84), Expect = 0.077
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGIN-----ELRRIAA 62
           P+LP  +    T +W  Q+  D R  +V K++   K   P    E +N     +L   A 
Sbjct: 584 PNLPPPDMPDCTKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYAR 640

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGS 99
           + E+++F  A ++ +Y   ++ K+  ++ + Q    S
Sbjct: 641 KVEKEMFESANDREEYYHLLAEKIYKIQKELQEKKNS 677



>gi|21307831|gb|AAL54859.1|   CREB-binding protein [Aplysia californica]
          Length = 2245

 Score = 36.3 bits (83), Expect = 0.097
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 8   PSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE-----LRRIAA 62
           P +    P     DW  Q+  D R  +V+K+++ +    P      + +     L   A 
Sbjct: 491 PDIVKSIPVSSRKDWHAQVTQDLRNHLVHKLVQAI---FPTPDQATLRDSRMKNLVAYAR 547

Query: 63  RFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANN 108
           + E  ++  A N+  Y   ++ K+  ++ + +        +  A N
Sbjct: 548 KVEGDMYESANNRGQYYHLLAEKIYKIQKELEEKRIQRMKVQNAPN 593



>gi|27260988|dbj|BAC45105.1|   OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)]
          Length = 194

 Score = 35.9 bits (82), Expect = 0.14
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 21 DWRTQLPPDSRQKIVNKIM 39
          DWRT+L  D R ++ + I+
Sbjct: 12 DWRTRLGQDIRDRVTHDIL 30



>gi|15610187|ref|NP_217566.1|   hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv]
 gi|15842616|ref|NP_337653.1|   transcriptional regulator, TetR family [Mycobacterium
          tuberculosis CDC1551]
 gi|31794228|ref|NP_856721.1|   PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
          ASNC-FAMILY) [Mycobacterium bovis subsp. bovis
          AF2122/97]
 gi|7477469|pir||E70861   hypothetical protein Rv3050c - Mycobacterium tuberculosis
          (strain H37RV)
 gi|2791648|emb|CAA16135.1|   hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv]
 gi|13882931|gb|AAK47467.1|   transcriptional regulator, TetR family [Mycobacterium
          tuberculosis CDC1551]
 gi|31619823|emb|CAD96763.1|   PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
          ASNC-FAMILY) [Mycobacterium bovis subsp. bovis
          AF2122/97]
          Length = 246

 Score = 34.8 bits (79), Expect = 0.31
 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPE-GINELRRIAARFEEKIFSGALNQTDYL 79
          D R++   + R+K+ N+I++   + +   GPE  + ++   A   + KI+    +++D L
Sbjct: 18 DARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYRHFTDKSDLL 77

Query: 80 RKISMKMLTM 89
            I M++  M
Sbjct: 78 EAIGMRLRDM 87



>gi|15965299|ref|NP_385652.1|   PROBABLE TRIGGER FACTOR PROTEIN [Sinorhizobium meliloti]
 gi|21264076|sp|Q92Q12|TIG_RHIME   Trigger factor (TF)
 gi|15074479|emb|CAC46125.1|   PROBABLE TRIGGER FACTOR PROTEIN [Sinorhizobium meliloti]
          Length = 491

 Score = 33.6 bits (76), Expect = 0.65
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 19  TGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINE 56
            G   +Q    +RQK+  ++++ L +   F  PE + +
Sbjct: 277 RGQIESQFGSITRQKVKRQLLDQLDELYQFDTPERLVD 314






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Sep 15, 2003 10:23 PM
  Number of letters in database: 490,690,828
  Number of sequences in database:  1,524,159
  
Lambda     K      H
   0.311    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,450,901
Number of Sequences: 1524159
Number of extensions: 1215866
Number of successful extensions: 2260
Number of sequences better than  1.0: 5
Number of HSP's better than  1.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2254
Number of HSP's gapped (non-prelim): 5
length of query: 117
length of database: 490,690,828
effective HSP length: 93
effective length of query: 24
effective length of database: 348,944,041
effective search space: 8374656984
effective search space used: 8374656984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 74 (33.0 bits)