################################### Hits in SPBC146.01 with E < 0.01 ######SEQUENCE MRDRALPCKCMPSFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKN EYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRL QNQNVPMQAGMQQFARNMKLTPQQRQ ######COMMAND blastpgp -i -F T -j 10 -a 4 -h 0.005 -e 10 -d nr ######HIT_SUMMARY HSP__Pos in Q_________________Subject__________________from species_______Pos in S___E-value___ 1 1 .. 146 NP_595390.1| putative transcriptional re Schizosaccharom 1 .. 146 E= 2.0e-66 ***** 1 Number of hits for SPBC146.01 below with E-value < 0.01 : 1 ######RAW OUTPUT BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPBC146.01 (146 letters) Database: /local/data/sequences/fasta/nr 1,459,938 sequences; 468,778,868 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value ref|NP_595390.1| putative transcriptional regulatory protein [Sc... 251 2e-66 ref|NP_172638.1| galactosyltransferase family [Arabidopsis thali... 31 3.2 pir||A86251 hypothetical protein [imported] - Arabidopsis thalia... 31 3.2 gb|AAH50280.1| integrin, alpha 7 [Homo sapiens] 31 3.4 ref|NP_002197.1| integrin alpha 7 precursor [Homo sapiens] >gi|7... 31 3.6 gb|AAC18968.1| integrin alpha 7 [Homo sapiens] 31 3.6 sp|Q13683|ITA7_HUMAN Integrin alpha-7 precursor 31 3.6 emb|CAB41534.1| integrin alpha 7 chain [Homo sapiens] 31 3.6 ref|NP_347173.1| Phosphoenolpyruvate synthase (gene pps) [Clostr... 30 4.5 ref|NP_246752.1| HemX [Pasteurella multocida] >gi|12722235|gb|AA... 30 6.6 gb|AAL91718.1| major surface protein hypervariable region [Anapl... 30 7.4 gb|AAL77332.1| major surface protein 2 hypervariable region [Ana... 30 8.4 ref|NP_492302.1| Putative nuclear protein, nematode specific [Ca... 29 9.7 >ref|NP_595390.1| putative transcriptional regulatory protein [Schizosaccharomyces pombe] emb|CAB87377.1| SPBP35G2.15 [Schizosaccharomyces pombe] Length = 653 Score = 251 bits (640), Expect = 2e-66 Identities = 146/146 (100%), Positives = 146/146 (100%) Query: 1 MRDRALPCKCMPSFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKN 60 MRDRALPCKCMPSFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKN Sbjct: 1 MRDRALPCKCMPSFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKN 60 Query: 61 EYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRL 120 EYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRL Sbjct: 61 EYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRL 120 Query: 121 QNQNVPMQAGMQQFARNMKLTPQQRQ 146 QNQNVPMQAGMQQFARNMKLTPQQRQ Sbjct: 121 QNQNVPMQAGMQQFARNMKLTPQQRQ 146 >ref|NP_172638.1| galactosyltransferase family [Arabidopsis thaliana] Length = 384 Score = 31.2 bits (69), Expect = 3.2 Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 6/71 (8%) Query: 24 FSAQTLRIISPSISEVQLMNMALSFERQAFDGA------SSKNEYLTTCGKKTAQLRDQI 77 + T+ I+ SIS +++ +A ER++ G + K +Y G TA + Sbjct: 71 YGNNTIGILDKSISNLEMKLVAARAERESLSGKFNISNEAKKRKYFMVIGINTAFSSRKR 130 Query: 78 RDTLQATQMKQ 88 RD++++T M Q Sbjct: 131 RDSVRSTWMPQ 141 >pir||A86251 hypothetical protein [imported] - Arabidopsis thaliana gb|AAD30250.1|AC007296_11 Strong similarity to gb|AJ006228 Avr9 elicitor response protein from Nicotiana tabacum. EST gb|F15429 comes from this gene. [Arabidopsis thaliana] Length = 401 Score = 31.2 bits (69), Expect = 3.2 Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 6/71 (8%) Query: 24 FSAQTLRIISPSISEVQLMNMALSFERQAFDGA------SSKNEYLTTCGKKTAQLRDQI 77 + T+ I+ SIS +++ +A ER++ G + K +Y G TA + Sbjct: 71 YGNNTIGILDKSISNLEMKLVAARAERESLSGKFNISNEAKKRKYFMVIGINTAFSSRKR 130 Query: 78 RDTLQATQMKQ 88 RD++++T M Q Sbjct: 131 RDSVRSTWMPQ 141 >gb|AAH50280.1| integrin, alpha 7 [Homo sapiens] Length = 1137 Score = 30.8 bits (68), Expect = 3.4 Identities = 28/108 (25%), Positives = 47/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFER-QAFDGASSKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + QA K+++ CG Sbjct: 517 SYSPTVALDYVLDADTDRRLRGQVPHVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 576 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 577 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 623 >ref|NP_002197.1| integrin alpha 7 precursor [Homo sapiens] pir||JC5950 integrin alpha-7 chain precursor - human gb|AAC39708.1| integrin alpha-7 [Homo sapiens] gb|AAC80458.1| integrin alpha-7 [Homo sapiens] emb|CAB41535.1| integrin alpha 7 chain [Homo sapiens] Length = 1137 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/108 (25%), Positives = 47/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFER-QAFDGASSKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + QA K+++ CG Sbjct: 517 SYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 576 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 577 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 623 >gb|AAC18968.1| integrin alpha 7 [Homo sapiens] Length = 1137 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/108 (25%), Positives = 47/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFER-QAFDGASSKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + QA K+++ CG Sbjct: 517 SYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 576 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 577 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 623 >sp|Q13683|ITA7_HUMAN Integrin alpha-7 precursor Length = 1181 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/108 (25%), Positives = 47/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFER-QAFDGASSKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + QA K+++ CG Sbjct: 561 SYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 620 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 621 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 667 >emb|CAB41534.1| integrin alpha 7 chain [Homo sapiens] Length = 1141 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/108 (25%), Positives = 47/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFER-QAFDGASSKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + QA K+++ CG Sbjct: 521 SYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 580 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 581 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 627 >ref|NP_347173.1| Phosphoenolpyruvate synthase (gene pps) [Clostridium acetobutylicum] pir||F96965 phosphoenolpyruvate synthase (gene pps) [imported] - Clostridium acetobutylicum gb|AAK78513.1|AE007568_7 Phosphoenolpyruvate synthase (gene pps) [Clostridium acetobutylicum] Length = 868 Score = 30.4 bits (67), Expect = 4.5 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 51 QAFDGASSKNEYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNN--AGNVGALPTAGPN 108 Q S+ L + ++D + ++ +K +PS N N G N Sbjct: 371 QMLASKDSRKMLLNNMEQHDPLMKDALVTIIERDFIKALPSDNGNQSKSNKGVSAGESEN 430 Query: 109 RLANNPRVMPRLQNQNVPMQAGMQQFARNMK 139 ++ NNP ++ L N+N QA +++ N+K Sbjct: 431 QIENNPTIVSDLINKN---QASIEELKENIK 458 >ref|NP_246752.1| HemX [Pasteurella multocida] gb|AAK03897.1| HemX [Pasteurella multocida] Length = 248 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Query: 71 AQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRL 110 AQLR +TL+ Q ++P+ YNNA + AG NRL Sbjct: 145 AQLRGAKVETLECYQ--RVPTAYNNAEQISICKRAGINRL 182 >gb|AAL91718.1| major surface protein hypervariable region [Anaplasma phagocytophila] Length = 170 Score = 29.6 bits (65), Expect = 7.4 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 54 DGASSKNEYLTTCGKKTAQ----------LRDQIRDTLQATQMKQMPSVYNNAGNVGALP 103 D +S + CG+K L+D +R+TL+A + P+ +GN P Sbjct: 55 DNNTSGQSTVAVCGEKAGHNANGSGTVQSLKDFVRETLKADGNRNWPTSREKSGNTNTKP 114 Query: 104 TAGPNRLANNPRVMPRLQNQNVPMQAGM 131 N A ++ L + + AG+ Sbjct: 115 QPNDNAKAVAKDLVQELNHDEKTIVAGL 142 >gb|AAL77332.1| major surface protein 2 hypervariable region [Anaplasma phagocytophila] Length = 170 Score = 29.6 bits (65), Expect = 8.4 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 54 DGASSKNEYLTTCGKKTAQ----------LRDQIRDTLQATQMKQMPSVYNNAGNVGALP 103 D +S + CG+K L+D +R+TL+A + P+ +GN P Sbjct: 55 DNNTSGQSTVAVCGEKAGHNANGSGTVQSLKDFVRETLKADGNRNWPTSREKSGNTNTKP 114 Query: 104 TAGPNRLANNPRVMPRLQNQNVPMQAGM 131 N A ++ L + + AG+ Sbjct: 115 QPNDNAKAVAKDLVQELNHDEKTIVAGL 142 >ref|NP_492302.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] pir||T20318 hypothetical protein D1081.7 - Caenorhabditis elegans emb|CAB00028.1| Hypothetical protein D1081.7 [Caenorhabditis elegans] Length = 857 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 2/83 (2%) Query: 57 SSKNEYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRV 116 S ++E T+ ++ ++ R+++ T + +MPS + A + P L + Sbjct: 750 SVRDESATSSLMESTRIVHDSRESMTTTYVGEMPSPI--IEEIDATSSFDPKLLNLHSLF 807 Query: 117 MPRLQNQNVPMQAGMQQFARNMK 139 ++ QNV M GM QF R++K Sbjct: 808 DKLIEEQNVTMIVGMFQFVRSLK 830 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_595390.1| putative transcriptional regulatory protein [Sc... 271 2e-72 Sequences not found previously or not previously below threshold: ref|NP_104116.1| transcriptional regulator [Mesorhizobium loti] ... 32 1.2 ref|NP_002197.1| integrin alpha 7 precursor [Homo sapiens] >gi|7... 32 1.3 gb|AAC18968.1| integrin alpha 7 [Homo sapiens] 32 1.3 sp|Q13683|ITA7_HUMAN Integrin alpha-7 precursor 32 1.3 gb|AAH50280.1| integrin, alpha 7 [Homo sapiens] 32 1.3 emb|CAB41534.1| integrin alpha 7 chain [Homo sapiens] 32 1.3 emb|CAD58849.2| SMC3 protein [Takifugu rubripes] 32 1.6 gb|AAH44408.1| Similar to chondroitin sulfate proteoglycan 6 [Da... 32 1.7 ref|NP_858438.1| ORF298 [Sulfolobus islandicus] >gi|12745204|gb|... 31 2.5 ref|NP_172638.1| galactosyltransferase family [Arabidopsis thali... 31 3.1 ref|NP_246752.1| HemX [Pasteurella multocida] >gi|12722235|gb|AA... 31 3.1 pir||A86251 hypothetical protein [imported] - Arabidopsis thalia... 31 3.1 ref|NP_150028.1| conserved hypothetical protein [Clostridium per... 31 3.3 ref|NP_347173.1| Phosphoenolpyruvate synthase (gene pps) [Clostr... 31 3.4 ref|NP_492302.1| Putative nuclear protein, nematode specific [Ca... 31 3.5 gb|AAL84252.1|AF458050_1 type III effector HopPmaL [Pseudomonas ... 31 3.5 gb|AAL91718.1| major surface protein hypervariable region [Anapl... 31 4.1 gb|AAL78180.1| 44 kDa major outer membrane protein [Anaplasma ph... 31 4.1 gb|AAL77332.1| major surface protein 2 hypervariable region [Ana... 31 4.1 ref|NP_065845.1| densin-180 [Homo sapiens] >gi|16755893|gb|AAL28... 30 4.5 sp|P46307|RR3_CHLEU Chloroplast 30S ribosomal protein S3 >gi|108... 30 4.6 ref|NP_770251.1| bll3611 [Bradyrhizobium japonicum] >gi|27351871... 30 4.9 ref|NP_523922.1| archipelago CG15010-PC [Drosophila melanogaster... 30 6.0 ref|XP_143575.1| similar to densin-180 [Homo sapiens] [Mus muscu... 30 6.0 gb|AAF76466.1|AF266164_1 densin-180 variant D [Rattus norvegicus] 30 8.0 ref|XP_289401.1| hypothetical protein XP_289401 [Mus musculus] 30 8.0 CONVERGED! >ref|NP_595390.1| putative transcriptional regulatory protein [Schizosaccharomyces pombe] emb|CAB87377.1| SPBP35G2.15 [Schizosaccharomyces pombe] Length = 653 Score = 271 bits (692), Expect = 2e-72 Identities = 146/146 (100%), Positives = 146/146 (100%) Query: 1 MRDRALPCKCMPSFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKN 60 MRDRALPCKCMPSFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKN Sbjct: 1 MRDRALPCKCMPSFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKN 60 Query: 61 EYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRL 120 EYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRL Sbjct: 61 EYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRL 120 Query: 121 QNQNVPMQAGMQQFARNMKLTPQQRQ 146 QNQNVPMQAGMQQFARNMKLTPQQRQ Sbjct: 121 QNQNVPMQAGMQQFARNMKLTPQQRQ 146 >ref|NP_104116.1| transcriptional regulator [Mesorhizobium loti] dbj|BAB49902.1| transcriptional regulator [Mesorhizobium loti] Length = 303 Score = 32.4 bits (72), Expect = 1.2 Identities = 32/124 (25%), Positives = 55/124 (43%), Gaps = 15/124 (12%) Query: 21 TFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKNEYLTTCGKKTAQLRDQIRDT 80 +F +AQ L + ++S Q+ + F R+ F+ S+N L+T G+ A+ Sbjct: 25 SFTAAAQELDLTQGAVSR-QIRLLEDQFGRRLFE-RDSRNVRLSTAGEIYAEAVRSALGQ 82 Query: 81 LQATQMKQMPSVYNNAGNVGALPTAG--------PNRLANNPRVMPRLQNQNVPMQAGMQ 132 L+ + M + ++ N+ LPT G P+ +ANNP + N + G Sbjct: 83 LRDAALGLMSNRHSGILNLAILPTFGTRWLMPMIPDFVANNPDI-----TINFVTRVGRF 137 Query: 133 QFAR 136 FAR Sbjct: 138 DFAR 141 >ref|NP_002197.1| integrin alpha 7 precursor [Homo sapiens] pir||JC5950 integrin alpha-7 chain precursor - human gb|AAC39708.1| integrin alpha-7 [Homo sapiens] gb|AAC80458.1| integrin alpha-7 [Homo sapiens] emb|CAB41535.1| integrin alpha 7 chain [Homo sapiens] Length = 1137 Score = 32.4 bits (72), Expect = 1.3 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGAS-SKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + G K+++ CG Sbjct: 517 SYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 576 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 577 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 623 >gb|AAC18968.1| integrin alpha 7 [Homo sapiens] Length = 1137 Score = 32.4 bits (72), Expect = 1.3 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGAS-SKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + G K+++ CG Sbjct: 517 SYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 576 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 577 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 623 >sp|Q13683|ITA7_HUMAN Integrin alpha-7 precursor Length = 1181 Score = 32.4 bits (72), Expect = 1.3 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGAS-SKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + G K+++ CG Sbjct: 561 SYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 620 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 621 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 667 >gb|AAH50280.1| integrin, alpha 7 [Homo sapiens] Length = 1137 Score = 32.4 bits (72), Expect = 1.3 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGAS-SKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + G K+++ CG Sbjct: 517 SYSPTVALDYVLDADTDRRLRGQVPHVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 576 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 577 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 623 >emb|CAB41534.1| integrin alpha 7 chain [Homo sapiens] Length = 1141 Score = 32.4 bits (72), Expect = 1.3 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 13 SFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGAS-SKNEYLTTCGKKTA 71 S+ T+ L +V A T R + + V ++ L + G K+++ CG Sbjct: 521 SYSPTVALDYVLDADTDRRLRGQVPRVTFLSRNLEEPKHQASGTVWLKHQHDRVCGDAMF 580 Query: 72 QLRDQIRDTLQATQMK-----QMPSVYNNAGNVGALPTAGPNRLANNP 114 QL++ ++D L+A + Q P + A G LP P A+ P Sbjct: 581 QLQENVKDKLRAIVVTLSYSLQTPRLRRQAPGQG-LPPVAPILNAHQP 627 >emb|CAD58849.2| SMC3 protein [Takifugu rubripes] Length = 1217 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Query: 38 EVQLMNMALSFERQAFDGASSKNEYLTTCGKKTAQLRD---QIRDTLQATQ 85 E + N L+ R D SSK E TCG K+ QLRD RD ++ T+ Sbjct: 224 EYTIYNQELNETRAKLDELSSKRE---TCGDKSRQLRDAQQDARDKVEETE 271 >gb|AAH44408.1| Similar to chondroitin sulfate proteoglycan 6 [Danio rerio] Length = 1216 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Query: 38 EVQLMNMALSFERQAFDGASSKNEYLTTCGKKTAQLRD---QIRDTLQATQ 85 E + N L+ R D SSK E TCG K+ QLRD RD ++ T+ Sbjct: 224 EYTIYNQELNETRAKLDELSSKRE---TCGDKSRQLRDAQQDARDKVEETE 271 >ref|NP_858438.1| ORF298 [Sulfolobus islandicus] gb|AAK06936.1| ORF298 [Sulfolobus islandicus] Length = 298 Score = 31.2 bits (69), Expect = 2.5 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 37 SEVQLMNMALSFERQAFDGAS-SKNEYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNN 95 SE+ M + E + F+ + NE + KK L+ QI++T ++K++ YNN Sbjct: 187 SELYKMKNKTNAELKKFEKVTLIDNEEINELKKKIEDLKTQIKNTTDKKKLKELKGQYNN 246 Query: 96 A 96 A Sbjct: 247 A 247 >ref|NP_172638.1| galactosyltransferase family [Arabidopsis thaliana] Length = 384 Score = 31.2 bits (69), Expect = 3.1 Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 6/71 (8%) Query: 24 FSAQTLRIISPSISEVQLMNMALSFERQAFDGA------SSKNEYLTTCGKKTAQLRDQI 77 + T+ I+ SIS +++ +A ER++ G + K +Y G TA + Sbjct: 71 YGNNTIGILDKSISNLEMKLVAARAERESLSGKFNISNEAKKRKYFMVIGINTAFSSRKR 130 Query: 78 RDTLQATQMKQ 88 RD++++T M Q Sbjct: 131 RDSVRSTWMPQ 141 >ref|NP_246752.1| HemX [Pasteurella multocida] gb|AAK03897.1| HemX [Pasteurella multocida] Length = 248 Score = 31.2 bits (69), Expect = 3.1 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Query: 71 AQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRL 110 AQLR +TL+ Q ++P+ YNNA + AG NRL Sbjct: 145 AQLRGAKVETLECYQ--RVPTAYNNAEQISICKRAGINRL 182 >pir||A86251 hypothetical protein [imported] - Arabidopsis thaliana gb|AAD30250.1|AC007296_11 Strong similarity to gb|AJ006228 Avr9 elicitor response protein from Nicotiana tabacum. EST gb|F15429 comes from this gene. [Arabidopsis thaliana] Length = 401 Score = 31.2 bits (69), Expect = 3.1 Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 6/71 (8%) Query: 24 FSAQTLRIISPSISEVQLMNMALSFERQAFDGA------SSKNEYLTTCGKKTAQLRDQI 77 + T+ I+ SIS +++ +A ER++ G + K +Y G TA + Sbjct: 71 YGNNTIGILDKSISNLEMKLVAARAERESLSGKFNISNEAKKRKYFMVIGINTAFSSRKR 130 Query: 78 RDTLQATQMKQ 88 RD++++T M Q Sbjct: 131 RDSVRSTWMPQ 141 >ref|NP_150028.1| conserved hypothetical protein [Clostridium perfringens] dbj|BAB62473.1| conserved hypothetical protein [Clostridium perfringens] Length = 453 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 41 LMNMALSFERQAFDGASSKNEYLTTCGKKTAQLRDQIRDT-LQATQMKQMPSVYNNA 96 ++N+ ++ ERQ+ + E +C K +L + + T L K MP VYNNA Sbjct: 219 MLNVDINLERQSL---AEVMELEKSCAKTMNELANDDKSTFLNILNFKSMPIVYNNA 272 >ref|NP_347173.1| Phosphoenolpyruvate synthase (gene pps) [Clostridium acetobutylicum] pir||F96965 phosphoenolpyruvate synthase (gene pps) [imported] - Clostridium acetobutylicum gb|AAK78513.1|AE007568_7 Phosphoenolpyruvate synthase (gene pps) [Clostridium acetobutylicum] Length = 868 Score = 30.8 bits (68), Expect = 3.4 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 51 QAFDGASSKNEYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNN--AGNVGALPTAGPN 108 Q S+ L + ++D + ++ +K +PS N N G N Sbjct: 371 QMLASKDSRKMLLNNMEQHDPLMKDALVTIIERDFIKALPSDNGNQSKSNKGVSAGESEN 430 Query: 109 RLANNPRVMPRLQNQNVPMQAGMQQFARNMK 139 ++ NNP ++ L N+N QA +++ N+K Sbjct: 431 QIENNPTIVSDLINKN---QASIEELKENIK 458 >ref|NP_492302.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] pir||T20318 hypothetical protein D1081.7 - Caenorhabditis elegans emb|CAB00028.1| Hypothetical protein D1081.7 [Caenorhabditis elegans] Length = 857 Score = 30.8 bits (68), Expect = 3.5 Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 2/83 (2%) Query: 57 SSKNEYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRV 116 S ++E T+ ++ ++ R+++ T + +MPS + A + P L + Sbjct: 750 SVRDESATSSLMESTRIVHDSRESMTTTYVGEMPSPI--IEEIDATSSFDPKLLNLHSLF 807 Query: 117 MPRLQNQNVPMQAGMQQFARNMK 139 ++ QNV M GM QF R++K Sbjct: 808 DKLIEEQNVTMIVGMFQFVRSLK 830 >gb|AAL84252.1|AF458050_1 type III effector HopPmaL [Pseudomonas syringae pv. maculicola] Length = 385 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/36 (41%), Positives = 22/36 (60%) Query: 111 ANNPRVMPRLQNQNVPMQAGMQQFARNMKLTPQQRQ 146 +N+P+V P L PM AG +F R+M L+ Q R+ Sbjct: 40 SNSPQVPPPLNAPASPMPAGRPRFLRSMALSSQTRE 75 >gb|AAL91718.1| major surface protein hypervariable region [Anaplasma phagocytophila] Length = 170 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 54 DGASSKNEYLTTCGKKTAQ----------LRDQIRDTLQATQMKQMPSVYNNAGNVGALP 103 D +S + CG+K L+D +R+TL+A + P+ +GN P Sbjct: 55 DNNTSGQSTVAVCGEKAGHNANGSGTVQSLKDFVRETLKADGNRNWPTSREKSGNTNTKP 114 Query: 104 TAGPNRLANNPRVMPRLQNQNVPMQAGM 131 N A ++ L + + AG+ Sbjct: 115 QPNDNAKAVAKDLVQELNHDEKTIVAGL 142 >gb|AAL78180.1| 44 kDa major outer membrane protein [Anaplasma phagocytophilum] Length = 142 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 54 DGASSKNEYLTTCGKKTAQ----------LRDQIRDTLQATQMKQMPSVYNNAGNVGALP 103 D +S + CG+K L+D +R+TL+A + P+ +GN P Sbjct: 50 DNNTSGQSTVAVCGEKAGHNANGSGTVQSLKDFVRETLKADGNRNWPTSREKSGNTNTKP 109 Query: 104 TAGPNRLANNPRVMPRLQNQNVPMQAGM 131 N A ++ L + + AG+ Sbjct: 110 QPNDNAKAVAKDLVQELNHDEKTIVAGL 137 >gb|AAL77332.1| major surface protein 2 hypervariable region [Anaplasma phagocytophila] Length = 170 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 54 DGASSKNEYLTTCGKKTAQ----------LRDQIRDTLQATQMKQMPSVYNNAGNVGALP 103 D +S + CG+K L+D +R+TL+A + P+ +GN P Sbjct: 55 DNNTSGQSTVAVCGEKAGHNANGSGTVQSLKDFVRETLKADGNRNWPTSREKSGNTNTKP 114 Query: 104 TAGPNRLANNPRVMPRLQNQNVPMQAGM 131 N A ++ L + + AG+ Sbjct: 115 QPNDNAKAVAKDLVQELNHDEKTIVAGL 142 >ref|NP_065845.1| densin-180 [Homo sapiens] gb|AAL28133.1|AF434715_1 densin-180 [Homo sapiens] Length = 1537 Score = 30.5 bits (67), Expect = 4.5 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 65 TCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPN------RLANNPRVMP 118 +CGK A R Q+ ++A ++ + + +N N+G LP G + + N + Sbjct: 1262 SCGKMPADWRQQLLRHIEARRLDRNAAYKHNTVNLGMLPYGGISAMHAGRSMTLNLQTKS 1321 Query: 119 RLQNQNVPMQ 128 + +Q +P+Q Sbjct: 1322 KFDHQELPLQ 1331 >sp|P46307|RR3_CHLEU Chloroplast 30S ribosomal protein S3 pir||S51368 ribosomal protein S3 - Chlamydomonas eugametos chloroplast gb|AAA84159.1| ribosomal protein S3 [Chlamydomonas eugametos] Length = 800 Score = 30.5 bits (67), Expect = 4.6 Identities = 27/85 (31%), Positives = 38/85 (43%), Gaps = 12/85 (14%) Query: 58 SKNEYLTTCGKKTAQLRDQ-IRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRV 116 +KN+Y T L D+ IRDTL K P + N + G+ P N R+ Sbjct: 27 NKNKYSQTV------LEDRMIRDTLN----KLFPELLNPSTKGGSAPKRHQNARIKKSRI 76 Query: 117 MP-RLQNQNVPMQAGMQQFARNMKL 140 +++ VP Q G+Q A N KL Sbjct: 77 TQIKIERNIVPYQIGIQIHAENCKL 101 >ref|NP_770251.1| bll3611 [Bradyrhizobium japonicum] dbj|BAC48876.1| bll3611 [Bradyrhizobium japonicum USDA 110] Length = 623 Score = 30.5 bits (67), Expect = 4.9 Identities = 26/84 (30%), Positives = 37/84 (43%), Gaps = 11/84 (13%) Query: 32 ISPSISEVQLMNMALSFERQAFDGASSKNEYLTTCGKKTAQLRDQIR--------DTLQA 83 + P++S L+ A A DG S + Y T K A+ +R D LQA Sbjct: 181 VEPAVSNT-LIAFAAKAGLTALDGNSKNSPYATALVKYIAKPGLDLRRAFGFVRDDVLQA 239 Query: 84 TQMKQMPSVYNNAG--NVGALPTA 105 T +Q P VY + G +V +P A Sbjct: 240 TGNRQEPYVYGSLGGEDVALVPAA 263 >ref|NP_523922.1| archipelago CG15010-PC [Drosophila melanogaster] ref|NP_728964.1| archipelago CG15010-PA [Drosophila melanogaster] ref|NP_728965.1| archipelago CG15010-PB [Drosophila melanogaster] gb|AAF47869.1| CG15010-PA [Drosophila melanogaster] gb|AAG22246.1| CG15010-PC [Drosophila melanogaster] gb|AAG22247.1| CG15010-PB [Drosophila melanogaster] gb|AAL28848.1| LD21322p [Drosophila melanogaster] gb|AAL68231.1| LD30271p [Drosophila melanogaster] Length = 1326 Score = 30.1 bits (66), Expect = 6.0 Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 55 GASSKNEYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTA 105 GAS++ +Y TT K A+ + T + + P + AG+VGA PTA Sbjct: 583 GASNRCQYATTSTTKAARQVNASAQTQERFLTRSNPPAASGAGSVGANPTA 633 >ref|XP_143575.1| similar to densin-180 [Homo sapiens] [Mus musculus] Length = 1016 Score = 30.1 bits (66), Expect = 6.0 Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 6/70 (8%) Query: 65 TCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRLQN-- 122 +CGK A R Q+ ++A ++ + + +N N+G LP G + + + LQ Sbjct: 627 SCGKMPADWRQQLLRHIEARRLDRNAAYKHNTVNLGMLPYGGISAMHAGRSMTLNLQTKS 686 Query: 123 ----QNVPMQ 128 Q++P+Q Sbjct: 687 KFDLQDLPLQ 696 >gb|AAF76466.1|AF266164_1 densin-180 variant D [Rattus norvegicus] Length = 296 Score = 29.7 bits (65), Expect = 8.0 Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 6/70 (8%) Query: 65 TCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAGPNRLANNPRVMPRLQN-- 122 +CGK A R Q+ ++A ++ + + +N N+G LP G + + + LQ Sbjct: 21 SCGKMPADWRQQLLRHIEARRLDRNAAYKHNTVNLGMLPYGGISAMHAGRSMTLNLQTKS 80 Query: 123 ----QNVPMQ 128 Q++P+Q Sbjct: 81 KFDLQDLPLQ 90 >ref|XP_289401.1| hypothetical protein XP_289401 [Mus musculus] Length = 316 Score = 29.7 bits (65), Expect = 8.0 Identities = 17/69 (24%), Positives = 30/69 (42%), Gaps = 1/69 (1%) Query: 47 SFERQAFDGASSKNEYLTTCGKKTAQLRDQIRDTLQATQMKQMPSVYNNAGNVGALPTAG 106 + ++ D + + +T CG+ L I DTL A+Q + + SV + G Sbjct: 135 ALRKRQTDNSMCRLRLITGCGESRQGLPTSIEDTLSASQ-QSLTSVMGTGALISQTERMG 193 Query: 107 PNRLANNPR 115 P ++ PR Sbjct: 194 PCKVQVGPR 202 Database: /local/data/sequences/fasta/nr Posted date: Jun 30, 2003 5:37 PM Number of letters in database: 468,778,868 Number of sequences in database: 1,459,938 Lambda K H 0.320 0.130 0.372 Lambda K H 0.267 0.0397 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 234,370,936 Number of Sequences: 1459938 Number of extensions: 7933703 Number of successful extensions: 18508 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 74 Number of HSP's that attempted gapping in prelim test: 18469 Number of HSP's gapped (non-prelim): 107 length of query: 146 length of database: 468,778,868 effective HSP length: 122 effective length of query: 24 effective length of database: 290,666,432 effective search space: 6975994368 effective search space used: 6975994368 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 65 (29.7 bits)