################################### Hits in GALY_YEAST with E < 0.01 ######SEQUENCE MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS SSKKEYMDSMNEKVAVMRNTYNTRKNAVTAAAANNNIKPVEQHHINNLKNSGNSANNMNV NMNLNPQMFLNQQAQARQQVAQQLRNQQQQQ ######COMMAND blastpgp -i GALY_YEAST -F T -j 10 -a 4 -h 0.005 -e 10 -d nr ######HIT_SUMMARY HSP__Pos in Q_________________Subject__________________from species_______Pos in S___E-value___ 1 1 .. 129 NP_014591.1| Regulates transcription of Saccharomyces c 1 .. 129 E= 2.0e-39 1 1 .. 129 AAA34622.1| auxiliary activator -------- 1 .. 129 E= 3.0e-39 1 1 .. 129 CAA62537.1| transcriptional activator [S Saccharomyces c 1 .. 129 E= 2.0e-38 ***** 3 Number of hits for GALY_YEAST below with E-value < 0.01 : 3 ######RAW OUTPUT BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= GALY_YEAST (151 letters) Database: /local/data/sequences/fasta/nr 1,459,938 sequences; 468,778,868 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value ref|NP_014591.1| Regulates transcription of a diverse array of g... 161 2e-39 gb|AAA34622.1| auxiliary activator 161 3e-39 emb|CAA62537.1| transcriptional activator [Saccharomyces cerevis... 158 2e-38 sp|P32257|GALY_KLULA TRANSCRIPTION REGULATORY PROTEIN GAL11 >gi|... 33 1.8 >ref|NP_014591.1| Regulates transcription of a diverse array of genes. Required for mating and sporulation.; Gal11p [Saccharomyces cerevisiae] sp|P19659|GALY_YEAST TRANSCRIPTION REGULATORY PROTEIN GAL11 pir||S66736 transcription activator GAL11 - yeast (Saccharomyces cerevisiae) emb|CAA99056.1| ORF YOL051w [Saccharomyces cerevisiae] Length = 1081 Score = 161 bits (408), Expect = 2e-39 Identities = 94/129 (72%), Positives = 94/129 (72%) Query: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS Sbjct: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 Query: 61 SSKKEYMDSMNEKVAVMRNTYXXXXXXXXXXXXXXXIKPVEQHHIXXXXXXXXXXXXXXX 120 SSKKEYMDSMNEKVAVMRNTY IKPVEQHHI Sbjct: 61 SSKKEYMDSMNEKVAVMRNTYNTRKNAVTAAAANNNIKPVEQHHINNLKNSGNSANNMNV 120 Query: 121 XXXXXPQMF 129 PQMF Sbjct: 121 NMNLNPQMF 129 >gb|AAA34622.1| auxiliary activator Length = 1081 Score = 161 bits (408), Expect = 3e-39 Identities = 94/129 (72%), Positives = 94/129 (72%) Query: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS Sbjct: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 Query: 61 SSKKEYMDSMNEKVAVMRNTYXXXXXXXXXXXXXXXIKPVEQHHIXXXXXXXXXXXXXXX 120 SSKKEYMDSMNEKVAVMRNTY IKPVEQHHI Sbjct: 61 SSKKEYMDSMNEKVAVMRNTYNTRKNAVTAAAANNNIKPVEQHHINNLKNSGNSANNMNV 120 Query: 121 XXXXXPQMF 129 PQMF Sbjct: 121 NMNLNPQMF 129 >emb|CAA62537.1| transcriptional activator [Saccharomyces cerevisiae] Length = 351 Score = 158 bits (399), Expect = 2e-38 Identities = 94/129 (72%), Positives = 94/129 (72%) Query: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS Sbjct: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 Query: 61 SSKKEYMDSMNEKVAVMRNTYXXXXXXXXXXXXXXXIKPVEQHHIXXXXXXXXXXXXXXX 120 SSKKEYMDSMNEKVAVMRNTY IKPVEQHHI Sbjct: 61 SSKKEYMDSMNEKVAVMRNTYNTRKNAVTAAAANNNIKPVEQHHINNLKNSGNSANNMNV 120 Query: 121 XXXXXPQMF 129 PQMF Sbjct: 121 NMNLNPQMF 129 >sp|P32257|GALY_KLULA TRANSCRIPTION REGULATORY PROTEIN GAL11 pir||S19033 transcription activator GAL11 - yeast (Kluyveromyces marxianus var. lactis) (fragment) gb|AAA35254.1| GAL11 transcription activator Length = 1008 Score = 32.7 bits (73), Expect = 1.8 Identities = 16/49 (32%), Positives = 34/49 (68%), Gaps = 2/49 (4%) Query: 31 INTLNGG--SSDTADKIRIHAKNFEAALFAKSSSKKEYMDSMNEKVAVM 77 ++ +NGG ++ +K++ A+ FE++L+A +SK Y+D+M +++A M Sbjct: 1 MSRINGGEKANFNLEKLKKSAEQFESSLYASCNSKDLYLDAMRKRIAAM 49 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: emb|CAA62537.1| transcriptional activator [Saccharomyces cerevis... 189 9e-48 ref|NP_014591.1| Regulates transcription of a diverse array of g... 189 9e-48 gb|AAA34622.1| auxiliary activator 189 9e-48 Sequences not found previously or not previously below threshold: sp|P32257|GALY_KLULA TRANSCRIPTION REGULATORY PROTEIN GAL11 >gi|... 38 0.044 ref|ZP_00079900.1| hypothetical protein [Geobacter metallireducens] 30 9.3 CONVERGED! >emb|CAA62537.1| transcriptional activator [Saccharomyces cerevisiae] Length = 351 Score = 189 bits (480), Expect = 9e-48 Identities = 94/129 (72%), Positives = 94/129 (72%) Query: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS Sbjct: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 Query: 61 SSKKEYMDSMNEKVAVMRNTYXXXXXXXXXXXXXXXIKPVEQHHIXXXXXXXXXXXXXXX 120 SSKKEYMDSMNEKVAVMRNTY IKPVEQHHI Sbjct: 61 SSKKEYMDSMNEKVAVMRNTYNTRKNAVTAAAANNNIKPVEQHHINNLKNSGNSANNMNV 120 Query: 121 XXXXXPQMF 129 PQMF Sbjct: 121 NMNLNPQMF 129 >ref|NP_014591.1| Regulates transcription of a diverse array of genes. Required for mating and sporulation.; Gal11p [Saccharomyces cerevisiae] sp|P19659|GALY_YEAST TRANSCRIPTION REGULATORY PROTEIN GAL11 pir||S66736 transcription activator GAL11 - yeast (Saccharomyces cerevisiae) emb|CAA99056.1| ORF YOL051w [Saccharomyces cerevisiae] Length = 1081 Score = 189 bits (480), Expect = 9e-48 Identities = 94/129 (72%), Positives = 94/129 (72%) Query: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS Sbjct: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 Query: 61 SSKKEYMDSMNEKVAVMRNTYXXXXXXXXXXXXXXXIKPVEQHHIXXXXXXXXXXXXXXX 120 SSKKEYMDSMNEKVAVMRNTY IKPVEQHHI Sbjct: 61 SSKKEYMDSMNEKVAVMRNTYNTRKNAVTAAAANNNIKPVEQHHINNLKNSGNSANNMNV 120 Query: 121 XXXXXPQMF 129 PQMF Sbjct: 121 NMNLNPQMF 129 >gb|AAA34622.1| auxiliary activator Length = 1081 Score = 189 bits (480), Expect = 9e-48 Identities = 94/129 (72%), Positives = 94/129 (72%) Query: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS Sbjct: 1 MSAAPVQDKDTLSNAERAKNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKS 60 Query: 61 SSKKEYMDSMNEKVAVMRNTYXXXXXXXXXXXXXXXIKPVEQHHIXXXXXXXXXXXXXXX 120 SSKKEYMDSMNEKVAVMRNTY IKPVEQHHI Sbjct: 61 SSKKEYMDSMNEKVAVMRNTYNTRKNAVTAAAANNNIKPVEQHHINNLKNSGNSANNMNV 120 Query: 121 XXXXXPQMF 129 PQMF Sbjct: 121 NMNLNPQMF 129 >sp|P32257|GALY_KLULA TRANSCRIPTION REGULATORY PROTEIN GAL11 pir||S19033 transcription activator GAL11 - yeast (Kluyveromyces marxianus var. lactis) (fragment) gb|AAA35254.1| GAL11 transcription activator Length = 1008 Score = 37.8 bits (86), Expect = 0.044 Identities = 16/49 (32%), Positives = 34/49 (68%), Gaps = 2/49 (4%) Query: 31 INTLNGG--SSDTADKIRIHAKNFEAALFAKSSSKKEYMDSMNEKVAVM 77 ++ +NGG ++ +K++ A+ FE++L+A +SK Y+D+M +++A M Sbjct: 1 MSRINGGEKANFNLEKLKKSAEQFESSLYASCNSKDLYLDAMRKRIAAM 49 >ref|ZP_00079900.1| hypothetical protein [Geobacter metallireducens] Length = 318 Score = 30.1 bits (66), Expect = 9.3 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 9 KDTLSNAERA-KNVNGLLQVLMDINTLNGGSSDTADKIRIHAKNFEAALFAKSSSKKEYM 67 ++ +N E+A K ++ L +L DI + GGS ++ + EAA ++ + + Sbjct: 231 EEMAANREQALKQLDVLASLLRDILLIQGGSDAVVNRDIMPFLESEAARLSREKNLERIS 290 Query: 68 DSMNEKVAVMRN 79 ++M + A+MRN Sbjct: 291 NTMEARQALMRN 302 Database: /local/data/sequences/fasta/nr Posted date: Jun 30, 2003 5:37 PM Number of letters in database: 468,778,868 Number of sequences in database: 1,459,938 Lambda K H 0.313 0.125 0.335 Lambda K H 0.267 0.0384 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,272,957 Number of Sequences: 1459938 Number of extensions: 3630105 Number of successful extensions: 7362 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 7354 Number of HSP's gapped (non-prelim): 12 length of query: 151 length of database: 468,778,868 effective HSP length: 112 effective length of query: 39 effective length of database: 305,265,812 effective search space: 11905366668 effective search space used: 11905366668 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 67 (30.5 bits)