###################################
Hits in At2g10440  with E < 0.01 

######SEQUENCE
RDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKINDIASKFEENFYSIATDK
TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTAAATSSAKFVETTYSTAFS
SIKLTKHSITDQKSVF


######COMMAND
blastpgp -i At2g10440 -F T -j 10 -a 4  -h 0.005 -e 10  -d nr 

######HIT_SUMMARY
HSP__Pos in Q_________________Subject__________________from species_______Pos in S___E-value___

1    1 .. 136 NP_178842.1| hypothetical protein [Arabi Arabidopsis tha    16 .. 151  E= 3.0e-48
1    9 ..  83 B86292 F7H2.12 protein - Arabidopsis tha Arabidopsis tha    21 ..  97  E= 2.0e-04
1    9 ..  61 NP_173030.1| expressed protein [Arabidop Arabidopsis tha    21 ..  76  E= 3.0e-03
1    9 ..  61 AAN62354.1|AF506028_23 CTV.22 [Poncirus  Poncirus trifol    36 ..  91  E= 6.0e-03
1    9 ..  66 NP_173031.2| expressed protein [Arabidop Arabidopsis tha     6 ..  66  E= 5.0e-08
2    2 ..  60 NP_173031.2| expressed protein [Arabidop Arabidopsis tha   104 .. 165  E= 4.0e-04
1    9 ..  66 BAC56002.1| P0705A05.20 [Oryza sativa (j Oryza sativa (j    36 ..  96  E= 2.0e-07
1    9 ..  66 AAN62347.1|AF506028_14 CTV.20 [Poncirus  Poncirus trifol    16 ..  76  E= 5.0e-07
1    8 ..  66 BAC45101.1| OJ1705_C03.23 [Oryza sativa  Oryza sativa (j    11 ..  72  E= 4.0e-03


*****  9
Number of hits for At2g10440  below with E-value < 0.01 : 9 



######RAW OUTPUT
BLASTP 2.2.4 [Aug-26-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g10440 
         (136 letters)

Database: /local/data/sequences/fasta/nr 
           1,459,938 sequences; 468,778,868 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi...   190   3e-48
pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g...    39   0.011
ref|NP_173030.1| expressed protein [Arabidopsis thaliana]              36   0.083
gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]                 36   0.11 
dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro...    34   0.38 

>ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana]
 pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score =  190 bits (483), Expect = 3e-48
 Identities = 108/136 (79%), Positives = 108/136 (79%)

Query: 1   RDAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXINDIASKFEENFYSIATDK 60
           RDAANNRIDWRSQHEPELRQKVLSKIV              INDIASKFEENFYSIATDK
Sbjct: 16  RDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKINDIASKFEENFYSIATDK 75

Query: 61  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKXXXXXXXXXXXXXXKFVETTYSTAFS 120
           TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSK              KFVETTYSTAFS
Sbjct: 76  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTAAATSSAKFVETTYSTAFS 135

Query: 121 SIKLTKHSITDQKSVF 136
           SIKLTKHSITDQKSVF
Sbjct: 136 SIKLTKHSITDQKSVF 151


>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
 gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A ++    +
Sbjct: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQRFV-R 79

Query: 66 QWLQQNTQSNLCVICFAK 83
          QW  Q+ +     IC AK
Sbjct: 80 QWTPQHGKELTFGICKAK 97


>ref|NP_173030.1| expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score = 36.2 bits (82), Expect = 0.083
 Identities = 20/56 (35%), Positives = 32/56 (56%), Gaps = 3/56 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKT 61
          DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A ++T
Sbjct: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQT 76


>gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 17/56 (30%), Positives = 32/56 (56%), Gaps = 3/56 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKT 61
          DWR+Q +P+ RQ++++KI+              +N+   IA +FEE  Y+ A+ ++
Sbjct: 36 DWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQS 91


>dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKT 61
          DWRSQ + E R ++++KI+              +N+   IA +FEE  Y+ AT ++
Sbjct: 36 DWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQS 91


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi...   224   2e-58

Sequences not found previously or not previously below threshold:

pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g...    45   2e-04
ref|NP_173030.1| expressed protein [Arabidopsis thaliana]              41   0.003
gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]                 40   0.006
dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro...    38   0.024

>ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana]
 pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score =  224 bits (570), Expect = 2e-58
 Identities = 108/136 (79%), Positives = 108/136 (79%)

Query: 1   RDAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXINDIASKFEENFYSIATDK 60
           RDAANNRIDWRSQHEPELRQKVLSKIV              INDIASKFEENFYSIATDK
Sbjct: 16  RDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKINDIASKFEENFYSIATDK 75

Query: 61  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKXXXXXXXXXXXXXXKFVETTYSTAFS 120
           TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSK              KFVETTYSTAFS
Sbjct: 76  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTAAATSSAKFVETTYSTAFS 135

Query: 121 SIKLTKHSITDQKSVF 136
           SIKLTKHSITDQKSVF
Sbjct: 136 SIKLTKHSITDQKSVF 151


>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
 gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score = 44.8 bits (104), Expect = 2e-04
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A ++    +
Sbjct: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQRFV-R 79

Query: 66 QWLQQNTQSNLCVICFAK 83
          QW  Q+ +     IC AK
Sbjct: 80 QWTPQHGKELTFGICKAK 97


>ref|NP_173030.1| expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score = 40.9 bits (94), Expect = 0.003
 Identities = 20/56 (35%), Positives = 32/56 (56%), Gaps = 3/56 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKT 61
          DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A ++T
Sbjct: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQT 76


>gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score = 40.1 bits (92), Expect = 0.006
 Identities = 17/56 (30%), Positives = 32/56 (56%), Gaps = 3/56 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKT 61
          DWR+Q +P+ RQ++++KI+              +N+   IA +FEE  Y+ A+ ++
Sbjct: 36 DWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQS 91


>dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score = 38.2 bits (87), Expect = 0.024
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKT 61
          DWRSQ + E R ++++KI+              +N+   IA +FEE  Y+ AT ++
Sbjct: 36 DWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQS 91


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi...   216   7e-56
pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g...   117   3e-26
ref|NP_173030.1| expressed protein [Arabidopsis thaliana]              79   1e-14

Sequences not found previously or not previously below threshold:

gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]                 62   1e-09
ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25...    57   5e-08
dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro...    55   2e-07
gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]                 53   5e-07
dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g...    35   0.27 
gb|AAB26806.1| Notch neurogenic protein homolog {EST00259} [huma...    31   3.8  
sp|Q07008|NTC1_RAT Neurogenic locus notch homolog protein 1 prec...    30   5.7  
pir||S18188 notch protein homolog - rat                                30   5.7  
pir||A40043 notch protein homolog TAN-1 precursor - human              30   5.7  
ref|NP_060087.2| notch1 preproprotein; translocation-associated ...    30   5.7  
sp|P46531|NTC1_HUMAN Neurogenic locus notch homolog protein 1 pr...    30   5.7  
gb|AAA60614.1| TAN1                                                    30   5.7  
gb|EAA35746.1| hypothetical protein [Neurospora crassa]                30   7.1  

>ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana]
 pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score =  216 bits (549), Expect = 7e-56
 Identities = 108/136 (79%), Positives = 108/136 (79%)

Query: 1   RDAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXINDIASKFEENFYSIATDK 60
           RDAANNRIDWRSQHEPELRQKVLSKIV              INDIASKFEENFYSIATDK
Sbjct: 16  RDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKINDIASKFEENFYSIATDK 75

Query: 61  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKXXXXXXXXXXXXXXKFVETTYSTAFS 120
           TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSK              KFVETTYSTAFS
Sbjct: 76  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTAAATSSAKFVETTYSTAFS 135

Query: 121 SIKLTKHSITDQKSVF 136
           SIKLTKHSITDQKSVF
Sbjct: 136 SIKLTKHSITDQKSVF 151


>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
 gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  117 bits (293), Expect = 3e-26
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A ++    +
Sbjct: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQRFV-R 79

Query: 66 QWLQQNTQSNLCVICFAK 83
          QW  Q+ +     IC AK
Sbjct: 80 QWTPQHGKELTFGICKAK 97


>ref|NP_173030.1| expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score = 78.9 bits (193), Expect = 1e-14
 Identities = 20/61 (32%), Positives = 34/61 (54%), Gaps = 3/61 (4%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A ++T   +
Sbjct: 21 DWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLR 80

Query: 66 Q 66
          +
Sbjct: 81 K 81


>gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score = 62.3 bits (150), Expect = 1e-09
 Identities = 17/61 (27%), Positives = 34/61 (54%), Gaps = 3/61 (4%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWR+Q +P+ RQ++++KI+              +N+   IA +FEE  Y+ A+ ++   +
Sbjct: 36 DWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDYLR 95

Query: 66 Q 66
          +
Sbjct: 96 K 96


>ref|NP_173031.2| expressed protein [Arabidopsis thaliana]
 pir||C86292 F7H2.13 protein - Arabidopsis thaliana
 gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
          [Arabidopsis thaliana]
 gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana]
          Length = 179

 Score = 56.9 bits (136), Expect = 5e-08
 Identities = 16/61 (26%), Positives = 30/61 (48%), Gaps = 3/61 (4%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWR+Q     R ++++KI+               N+   IA +FEE  ++ A+++T   +
Sbjct: 6  DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYLR 65

Query: 66 Q 66
          Q
Sbjct: 66 Q 66



 Score = 44.2 bits (103), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 28/62 (44%), Gaps = 3/62 (4%)

Query: 2   DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
           + A N  DWR+Q   + RQK ++ ++              I++   IA   EE  ++ A 
Sbjct: 104 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 163

Query: 59  DK 60
           ++
Sbjct: 164 NQ 165


>dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score = 55.0 bits (131), Expect = 2e-07
 Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 3/61 (4%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWRSQ + E R ++++KI+              +N+   IA +FEE  Y+ AT ++   +
Sbjct: 36 DWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLR 95

Query: 66 Q 66
          +
Sbjct: 96 K 96


>gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWR+    + RQ++++KI+              +N+   IA +FEE  ++ AT ++   +
Sbjct: 16 DWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYLR 75

Query: 66 Q 66
          +
Sbjct: 76 K 76


>dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score = 34.6 bits (78), Expect = 0.27
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 8  IDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATD 59
          +DWR++   ++R +V   I+              + D   +A++ EE  Y IA D
Sbjct: 11 VDWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAID 65


>gb|AAB26806.1| Notch neurogenic protein homolog {EST00259} [human, Peptide
          Partial, 141 aa]
          Length = 141

 Score = 30.7 bits (68), Expect = 3.8
 Identities = 9/24 (37%), Positives = 12/24 (49%)

Query: 48 KFEENFYSIATDKTTTSQQWLQQN 71
          +FEE       D  T  +QW QQ+
Sbjct: 5  RFEEPVVLPDLDDQTXHRQWTQQH 28


>sp|Q07008|NTC1_RAT Neurogenic locus notch homolog protein 1 precursor (Notch 1)
 emb|CAA40667.1| rat notch protein [Rattus rattus]
          Length = 2531

 Score = 30.3 bits (67), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (49%)

Query: 48   KFEENFYSIATDKTTTSQQWLQQN 71
            +FEE       D  T  +QW QQ+
Sbjct: 1814 RFEEPVVLPDLDDQTDHRQWTQQH 1837


>pir||S18188 notch protein homolog - rat
          Length = 2531

 Score = 30.3 bits (67), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (49%)

Query: 48   KFEENFYSIATDKTTTSQQWLQQN 71
            +FEE       D  T  +QW QQ+
Sbjct: 1814 RFEEPVVLPDLDDQTDHRQWTQQH 1837


>pir||A40043 notch protein homolog TAN-1 precursor - human
          Length = 2555

 Score = 30.3 bits (67), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (49%)

Query: 48   KFEENFYSIATDKTTTSQQWLQQN 71
            +FEE       D  T  +QW QQ+
Sbjct: 1824 RFEEPVVLPDLDDQTDHRQWTQQH 1847


>ref|NP_060087.2| notch1 preproprotein; translocation-associated notch protein TAN-1;
            neurogenic locus notch homolog protein 1 [Homo sapiens]
          Length = 2556

 Score = 30.3 bits (67), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (49%)

Query: 48   KFEENFYSIATDKTTTSQQWLQQN 71
            +FEE       D  T  +QW QQ+
Sbjct: 1825 RFEEPVVLPDLDDQTDHRQWTQQH 1848


>sp|P46531|NTC1_HUMAN Neurogenic locus notch homolog protein 1 precursor (Notch 1) (hN1)
            (Translocation-associated notch protein TAN-1)
 gb|AAG33848.1|AF308602_1 NOTCH 1 [Homo sapiens]
          Length = 2556

 Score = 30.3 bits (67), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (49%)

Query: 48   KFEENFYSIATDKTTTSQQWLQQN 71
            +FEE       D  T  +QW QQ+
Sbjct: 1825 RFEEPVVLPDLDDQTDHRQWTQQH 1848


>gb|AAA60614.1| TAN1
          Length = 2444

 Score = 30.3 bits (67), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (49%)

Query: 48   KFEENFYSIATDKTTTSQQWLQQN 71
            +FEE       D  T  +QW QQ+
Sbjct: 1825 RFEEPVVLPDLDDQTDHRQWTQQH 1848


>gb|EAA35746.1| hypothetical protein [Neurospora crassa]
          Length = 1378

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 44  DIASKFEENFYSIATDKTTTSQQWLQQNT 72
            +AS++E++ ++ AT+  TT + +     
Sbjct: 630 QVASRYEQSLFNGATNANTTLKYYSPSCG 658


Searching..................................................done


Results from round 4


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi...   208   1e-53
pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g...   123   4e-28
ref|NP_173030.1| expressed protein [Arabidopsis thaliana]              98   2e-20
gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]                 91   3e-18
dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro...    87   6e-17
ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25...    84   4e-16
gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]                 82   1e-15

Sequences not found previously or not previously below threshold:

dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g...    41   0.004
gb|EAA35746.1| hypothetical protein [Neurospora crassa]                31   3.0  
pir||T18235 transcription activator GAL11 homolog - yeast (Candi...    31   3.4  

>ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana]
 pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score =  208 bits (529), Expect = 1e-53
 Identities = 108/136 (79%), Positives = 108/136 (79%)

Query: 1   RDAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXINDIASKFEENFYSIATDK 60
           RDAANNRIDWRSQHEPELRQKVLSKIV              INDIASKFEENFYSIATDK
Sbjct: 16  RDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKINDIASKFEENFYSIATDK 75

Query: 61  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKXXXXXXXXXXXXXXKFVETTYSTAFS 120
           TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSK              KFVETTYSTAFS
Sbjct: 76  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTAAATSSAKFVETTYSTAFS 135

Query: 121 SIKLTKHSITDQKSVF 136
           SIKLTKHSITDQKSVF
Sbjct: 136 SIKLTKHSITDQKSVF 151


>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
 gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  123 bits (310), Expect = 4e-28
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 2  DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
          + A +  DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A 
Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73

Query: 59 DKTTTSQQWLQQNTQSNLCVICFAK 83
          ++    +QW  Q+ +     IC AK
Sbjct: 74 NQRFV-RQWTPQHGKELTFGICKAK 97


>ref|NP_173030.1| expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score = 98.1 bits (243), Expect = 2e-20
 Identities = 21/68 (30%), Positives = 37/68 (53%), Gaps = 3/68 (4%)

Query: 2  DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
          + A +  DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A 
Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73

Query: 59 DKTTTSQQ 66
          ++T   ++
Sbjct: 74 NQTDYLRK 81


>gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score = 90.8 bits (224), Expect = 3e-18
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 2  DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
          ++  +  DWR+Q +P+ RQ++++KI+              +N+   IA +FEE  Y+ A+
Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88

Query: 59 DKTTTSQQ 66
           ++   ++
Sbjct: 89 SQSDYLRK 96


>dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score = 86.5 bits (213), Expect = 6e-17
 Identities = 19/67 (28%), Positives = 33/67 (48%), Gaps = 3/67 (4%)

Query: 3  AANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATD 59
           A    DWRSQ + E R ++++KI+              +N+   IA +FEE  Y+ AT 
Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89

Query: 60 KTTTSQQ 66
          ++   ++
Sbjct: 90 QSDYLRK 96


>ref|NP_173031.2| expressed protein [Arabidopsis thaliana]
 pir||C86292 F7H2.13 protein - Arabidopsis thaliana
 gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
          [Arabidopsis thaliana]
 gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana]
          Length = 179

 Score = 83.8 bits (206), Expect = 4e-16
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 7  RIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTT 63
            DWR+Q     R ++++KI+               N+   IA +FEE  ++ A+++T  
Sbjct: 4  TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 64 SQQ 66
           +Q
Sbjct: 64 LRQ 66



 Score = 64.6 bits (156), Expect = 2e-10
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 2   DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
           + A N  DWR+Q   + RQK ++ ++              I++   IA   EE  ++ A 
Sbjct: 104 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 163

Query: 59  DKTTTSQQ 66
           ++     +
Sbjct: 164 NQEDYLGK 171


>gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score = 82.3 bits (202), Expect = 1e-15
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 9  DWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTSQ 65
          DWR+    + RQ++++KI+              +N+   IA +FEE  ++ AT ++   +
Sbjct: 16 DWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQSDYLR 75

Query: 66 Q 66
          +
Sbjct: 76 K 76


>dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score = 40.7 bits (94), Expect = 0.004
 Identities = 14/62 (22%), Positives = 27/62 (42%), Gaps = 3/62 (4%)

Query: 8  IDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTTS 64
          +DWR++   ++R +V   I+              + D   +A++ EE  Y IA D     
Sbjct: 11 VDWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYL 70

Query: 65 QQ 66
          ++
Sbjct: 71 RR 72


>gb|EAA35746.1| hypothetical protein [Neurospora crassa]
          Length = 1378

 Score = 31.1 bits (69), Expect = 3.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 44  DIASKFEENFYSIATDKTTTSQQWLQQNT 72
            +AS++E++ ++ AT+  TT + +     
Sbjct: 630 QVASRYEQSLFNGATNANTTLKYYSPSCG 658


>pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans)
 emb|CAA21993.1| possible regulatory protein [Candida albicans]
          Length = 1145

 Score = 31.1 bits (69), Expect = 3.4
 Identities = 14/65 (21%), Positives = 25/65 (37%), Gaps = 3/65 (4%)

Query: 4  ANNRIDWRSQHEPELRQKVLSKI---VXXXXXXXXXXXXXXINDIASKFEENFYSIATDK 60
          +N    WR+ +  E RQKV+  I   +              ++ +A  FE+  Y  +  K
Sbjct: 17 SNPNASWRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASK 76

Query: 61 TTTSQ 65
              +
Sbjct: 77 EDYLR 81


Searching..................................................done


Results from round 5


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi...   203   5e-52
pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g...   126   6e-29
ref|NP_173030.1| expressed protein [Arabidopsis thaliana]             101   1e-21
gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]                 96   8e-20
dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro...    90   6e-18
gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]                 82   1e-15
ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25...    82   1e-15
dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g...    75   3e-13

Sequences not found previously or not previously below threshold:

dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-g...    38   0.026
dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-g...    32   1.8  
ref|XP_220122.1| hypothetical protein XP_220122 [Rattus norvegicus]    32   2.0  
ref|NP_083858.1| RIKEN cDNA 2810408E11 [Mus musculus] >gi|209872...    32   2.0  
ref|XP_218259.1| hypothetical protein XP_218259 [Rattus norvegicus]    32   2.0  
ref|ZP_00008225.1| hypothetical protein [Rhodobacter sphaeroides]      31   3.4  
ref|NP_243272.1| BH2406~unknown conserved protein [Bacillus halo...    31   4.1  


CONVERGED!
>ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana]
 pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana
 gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana]
          Length = 935

 Score =  203 bits (516), Expect = 5e-52
 Identities = 108/136 (79%), Positives = 108/136 (79%)

Query: 1   RDAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXINDIASKFEENFYSIATDK 60
           RDAANNRIDWRSQHEPELRQKVLSKIV              INDIASKFEENFYSIATDK
Sbjct: 16  RDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKINDIASKFEENFYSIATDK 75

Query: 61  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKXXXXXXXXXXXXXXKFVETTYSTAFS 120
           TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSK              KFVETTYSTAFS
Sbjct: 76  TTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTAAATSSAKFVETTYSTAFS 135

Query: 121 SIKLTKHSITDQKSVF 136
           SIKLTKHSITDQKSVF
Sbjct: 136 SIKLTKHSITDQKSVF 151


>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
 gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
          Length = 1366

 Score =  126 bits (317), Expect = 6e-29
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 2  DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
          + A +  DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A 
Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73

Query: 59 DKTTTSQQWLQQNTQSNLCVICFAK 83
          ++    +QW  Q+ +     IC AK
Sbjct: 74 NQRFV-RQWTPQHGKELTFGICKAK 97


>ref|NP_173030.1| expressed protein [Arabidopsis thaliana]
          Length = 1335

 Score =  101 bits (253), Expect = 1e-21
 Identities = 21/68 (30%), Positives = 37/68 (53%), Gaps = 3/68 (4%)

Query: 2  DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
          + A +  DWR+Q  P+ RQK+++KI+              IN+   IA++FEE  +S A 
Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73

Query: 59 DKTTTSQQ 66
          ++T   ++
Sbjct: 74 NQTDYLRK 81


>gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata]
          Length = 1405

 Score = 96.1 bits (238), Expect = 8e-20
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 2  DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
          ++  +  DWR+Q +P+ RQ++++KI+              +N+   IA +FEE  Y+ A+
Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88

Query: 59 DKTTTSQQ 66
           ++   ++
Sbjct: 89 SQSDYLRK 96


>dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1359

 Score = 89.9 bits (222), Expect = 6e-18
 Identities = 19/67 (28%), Positives = 33/67 (48%), Gaps = 3/67 (4%)

Query: 3  AANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATD 59
           A    DWRSQ + E R ++++KI+              +N+   IA +FEE  Y+ AT 
Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89

Query: 60 KTTTSQQ 66
          ++   ++
Sbjct: 90 QSDYLRK 96


>gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]
          Length = 3148

 Score = 82.2 bits (202), Expect = 1e-15
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 5  NNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKT 61
           +  DWR+    + RQ++++KI+              +N+   IA +FEE  ++ AT ++
Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71

Query: 62 TTSQQ 66
             ++
Sbjct: 72 DYLRK 76


>ref|NP_173031.2| expressed protein [Arabidopsis thaliana]
 pir||C86292 F7H2.13 protein - Arabidopsis thaliana
 gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene.
          [Arabidopsis thaliana]
 gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana]
          Length = 179

 Score = 82.2 bits (202), Expect = 1e-15
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 7  RIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTT 63
            DWR+Q     R ++++KI+               N+   IA +FEE  ++ A+++T  
Sbjct: 4  TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 64 SQQ 66
           +Q
Sbjct: 64 LRQ 66



 Score = 66.4 bits (161), Expect = 8e-11
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 2   DAANNRIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIAT 58
           + A N  DWR+Q   + RQK ++ ++              I++   IA   EE  ++ A 
Sbjct: 104 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 163

Query: 59  DKTTTSQQ 66
           ++     +
Sbjct: 164 NQEDYLGK 171


>dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)]
          Length = 414

 Score = 74.5 bits (182), Expect = 3e-13
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 7  RIDWRSQHEPELRQKVLSKIVXXXXXXXXXXXXXXIND---IASKFEENFYSIATDKTTT 63
           +DWR++   ++R +V   I+              + D   +A++ EE  Y IA D    
Sbjct: 10 GVDWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDY 69

Query: 64 SQQ 66
           ++
Sbjct: 70 LRR 72


>dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)]
          Length = 194

 Score = 37.9 bits (87), Expect = 0.026
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query: 7  RIDWRSQHEPELRQKVLSKIV 27
           +DWR++   ++R +V   I+
Sbjct: 10 GVDWRTRLGQDIRDRVTHDIL 30


>dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)]
          Length = 87

 Score = 31.8 bits (71), Expect = 1.8
 Identities = 8/35 (22%), Positives = 13/35 (36%)

Query: 26 IVXXXXXXXXXXXXXXINDIASKFEENFYSIATDK 60
          I+              +  +A++ EE  Y IA D 
Sbjct: 41 ILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75


>ref|XP_220122.1| hypothetical protein XP_220122 [Rattus norvegicus]
          Length = 847

 Score = 31.8 bits (71), Expect = 2.0
 Identities = 12/36 (33%), Positives = 18/36 (49%)

Query: 51  ENFYSIATDKTTTSQQWLQQNTQSNLCVICFAKSGP 86
           EN Y  A++   T  +WLQ +   +L +    K GP
Sbjct: 264 ENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGP 299


>ref|NP_083858.1| RIKEN cDNA 2810408E11 [Mus musculus]
 gb|AAH29643.1| RIKEN cDNA 2810408E11 [Mus musculus]
          Length = 948

 Score = 31.8 bits (71), Expect = 2.0
 Identities = 12/36 (33%), Positives = 18/36 (49%)

Query: 51  ENFYSIATDKTTTSQQWLQQNTQSNLCVICFAKSGP 86
           EN Y  A++   T  +WLQ +   +L +    K GP
Sbjct: 310 ENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGP 345


>ref|XP_218259.1| hypothetical protein XP_218259 [Rattus norvegicus]
          Length = 612

 Score = 31.8 bits (71), Expect = 2.0
 Identities = 12/36 (33%), Positives = 18/36 (49%)

Query: 51  ENFYSIATDKTTTSQQWLQQNTQSNLCVICFAKSGP 86
           EN Y  A++   T  +WLQ +   +L +    K GP
Sbjct: 268 ENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGP 303


>ref|ZP_00008225.1| hypothetical protein [Rhodobacter sphaeroides]
          Length = 1715

 Score = 31.0 bits (69), Expect = 3.4
 Identities = 5/33 (15%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 43   NDIASKFEENFYSIATDKTTTSQQWLQQNTQSN 75
             + A +  E+++  A D+ +  ++W+       
Sbjct: 1051 IEEAVRLSEDYF--ALDQESFLRRWMPGRGVEL 1081


>ref|NP_243272.1| BH2406~unknown conserved protein [Bacillus halodurans]
 pir||F83950 hypothetical protein BH2406 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB06125.1| BH2406~unknown conserved protein [Bacillus halodurans]
          Length = 323

 Score = 30.6 bits (68), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 4   ANNRIDWRSQHEPELRQKVLSKI 26
           + + IDWR+    E+  +VLSK+
Sbjct: 251 SVDTIDWRNPDPNEMVDRVLSKV 273


  Database: /local/data/sequences/fasta/nr
    Posted date:  Jun 30, 2003  5:37 PM
  Number of letters in database: 468,778,868
  Number of sequences in database:  1,459,938
  
Lambda     K      H
   0.313    0.151    0.472 

Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,219,459
Number of Sequences: 1459938
Number of extensions: 16256432
Number of successful extensions: 25721
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 25650
Number of HSP's gapped (non-prelim): 57
length of query: 136
length of database: 468,778,868
effective HSP length: 112
effective length of query: 24
effective length of database: 305,265,812
effective search space: 7326379488
effective search space used: 7326379488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 65 (29.5 bits)